RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1775
(304 letters)
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 112 bits (283), Expect = 6e-32
Identities = 70/107 (65%), Positives = 88/107 (82%), Gaps = 2/107 (1%)
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQ 254
+V+DKVMIPQDE+P+INFVGLLIGPRGNTLK++EK+ AKI+IRGKGSVKEGKVGRKDGQ
Sbjct: 2 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQ 61
Query: 255 PLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSARPRARFPPGADFI 301
LPGE+EPLHA VTA+ ENVKKAV+++ ++ + P + +
Sbjct: 62 MLPGEDEPLHALVTANTMENVKKAVEQIRNIL--KQGIETPEDQNDL 106
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 110 bits (276), Expect = 1e-30
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGR--KD 252
++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++ K +
Sbjct: 1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 60
Query: 253 GQPLPGENEPLHAYVTAHNPENV-KKAVDRLVCLV 286
NE LH +T + +N + + R V V
Sbjct: 61 KPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEV 95
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human
immunodeficiency virus type 1, different isolates
[TaxId: 11676]}
Length = 42
Score = 44.5 bits (105), Expect = 2e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 43 RCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREK 85
+C NCG H + C C CG GH +DC E+
Sbjct: 3 KCFNCGKEGHTARNCRAPRKKG----CWKCGKEGHQMKDCTER 41
Score = 31.4 bits (71), Expect = 0.011
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 69 CSSCGGAGHIARDCREKRPGMG 90
C +CG GH AR+CR R
Sbjct: 4 CFNCGKEGHTARNCRAPRKKGC 25
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 45.2 bits (107), Expect = 3e-07
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 25/95 (26%)
Query: 192 PVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRK 251
++ V +V +P D H + IG +G+ ++ M + I +
Sbjct: 6 ALVPVTIEVEVPFDLHRYV------IGQKGSGIRKMMDEFEVNIHV-------------- 45
Query: 252 DGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLV 286
P N+ +A L+ V
Sbjct: 46 -----PAPELQSDIIAITGLAANLDRAKAGLLERV 75
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 43.3 bits (102), Expect = 1e-06
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 199 KVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPG 258
++ +P++ VG ++G G TL ++ TGA+I I K G+ LPG
Sbjct: 6 EMAVPEN------LVGAILGKGGKTLVEYQELTGARIQI------------SKKGEFLPG 47
Query: 259 ENEPLHAYVTAH-NPENVKKAVDRLVCLVS 287
VT +P + A + V+
Sbjct: 48 TRNRR---VTITGSPAATQAAQYLISQRVT 74
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 41.7 bits (98), Expect = 5e-06
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 24/92 (26%)
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQ 254
V++ V + H I IG RG ++ + + I G+ V
Sbjct: 9 MVSEDVPLDHRVHARI------IGARGKAIRKIMDEFKVDIRFPQSGAPDPNCV------ 56
Query: 255 PLPGENEPLHAYVTAHNPENVKKAVDRLVCLV 286
PENV++A+D ++ L
Sbjct: 57 ------------TVTGLPENVEEAIDHILNLE 76
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 40.5 bits (95), Expect = 1e-05
Identities = 7/74 (9%), Positives = 21/74 (28%), Gaps = 22/74 (29%)
Query: 209 DINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVT 268
V +IG + +++ +G I + G + T
Sbjct: 8 MPVKVPRVIGKNKSMYETLTSKSGCSIFVANNGRIW----------------------AT 45
Query: 269 AHNPENVKKAVDRL 282
+ + + ++ +
Sbjct: 46 CPSRFSEEILIEAI 59
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 40.2 bits (94), Expect = 1e-05
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 23/87 (26%)
Query: 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQP 255
+ ++ +P VG +IG G + +++++G KI I
Sbjct: 8 MTEEYKVPDG------MVGFIIGRGGEQISRIQQESGCKIQIA---------------PD 46
Query: 256 LPGENEPLHAYVTAHNPENVKKAVDRL 282
G E +T PE+V+ A L
Sbjct: 47 SGGLPERS-CMLTG-TPESVQSAKRLL 71
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 40.5 bits (95), Expect = 1e-05
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 27/93 (29%)
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQ 254
+ + V IP++ H +IG G L+ +E T KI I
Sbjct: 9 QASATVAIPKEHH------RFVIGKNGEKLQDLELKTATKIQI----------------- 45
Query: 255 PLPGENEPLHAYVTAH-NPENVKKAVDRLVCLV 286
P P + + E ++KA ++ +
Sbjct: 46 PRPDDPSNQ---IKITGTKEGIEKARHEVLLIS 75
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 39.7 bits (93), Expect = 2e-05
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 25/89 (28%)
Query: 199 KVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPG 258
++ I H + IG G + ++ + I P
Sbjct: 8 EINIDHKFHRHL------IGKSGANINRIKDQYKVSVRI-------------------PP 42
Query: 259 ENEPLHAYVTAHNPENVKKAVDRLVCLVS 287
++E + +P+ V++A L+ L S
Sbjct: 43 DSEKSNLIRIEGDPQGVQQAKRELLELAS 71
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 40.3 bits (94), Expect = 3e-05
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 21/98 (21%)
Query: 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQP 255
V +++ +PQ VG +IG G T++S+ K +GAKI K+ +
Sbjct: 15 VFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITC------------DKESEG 56
Query: 256 LPGENEPLHAYVTAHNPENVKKAVDRLVCLVSARPRAR 293
+ + ++ + V A ++ VS R
Sbjct: 57 TLLLSRLIK--ISG-TQKEVAAAKHLILEKVSEDEELR 91
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome
related protein 1, FXR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 39.1 bits (91), Expect = 4e-05
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 26/85 (30%)
Query: 198 DKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLP 257
++ ++ +D +GL IG G+ ++ K G I + G
Sbjct: 10 EEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELDE---DTGTF--------- 51
Query: 258 GENEPLHAYVTAHNPENVKKAVDRL 282
+ + + VKKA L
Sbjct: 52 --------RIYGESADAVKKARGFL 68
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 37.3 bits (87), Expect = 9e-05
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 192 PVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVK 244
P I V IP D +G +IGP+ + +++DTGA+I I G++
Sbjct: 2 PRI---ITVKIPVD------KIGEVIGPKRQMINQIQEDTGAEITIEDDGTIY 45
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 37.5 bits (87), Expect = 1e-04
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 23/93 (24%)
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQ 254
+ +V IP+D G +IG G +K + ++GA I I +
Sbjct: 3 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKID---------------E 41
Query: 255 PLPGENEPLHAYVTAHNPENVKKAVDRLVCLVS 287
PL G + +T + ++ A L V
Sbjct: 42 PLEGSEDR-IITITG-TQDQIQNAQYLLQNSVK 72
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 37.5 bits (87), Expect = 2e-04
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 22/89 (24%)
Query: 199 KVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPG 258
V + HP I IG +G + + + I K
Sbjct: 13 SVTVDPKYHPKI------IGRKGAVITQIRLEHDVNIQFPDKDD---------------- 50
Query: 259 ENEPLHAYVTAHNPENVKKAVDRLVCLVS 287
N+P +N + A D ++ +V
Sbjct: 51 GNQPQDQITITGYEKNTEAARDAILRIVG 79
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 37.5 bits (87), Expect = 2e-04
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 200 VMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIII 237
V + + +G +IGPRG + + TG I +
Sbjct: 7 VKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITV 38
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 37.4 bits (87), Expect = 2e-04
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 22/74 (29%)
Query: 209 DINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVT 268
V +IG + + LK++E+ T KI + G + +
Sbjct: 8 SPAKVPRVIGRKMSMLKTLEEKTECKIFVARNGRIH----------------------LE 45
Query: 269 AHNPENVKKAVDRL 282
N + AV +
Sbjct: 46 CPNEDLEAIAVMAI 59
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 36.3 bits (84), Expect = 3e-04
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 23/93 (24%)
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQ 254
+ ++ IP + +G +IG +G + + + +GA+I I
Sbjct: 1 QTTHELTIPNN------LIGCIIGRQGANINEIRQMSGAQIKIA---------------N 39
Query: 255 PLPGENEPLHAYVTAHNPENVKKAVDRLVCLVS 287
P+ G + +T + ++ A + +S
Sbjct: 40 PVEGSSGRQ-VTITG-SAASISLAQYLINARLS 70
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 36.4 bits (84), Expect = 3e-04
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 23/89 (25%)
Query: 199 KVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPG 258
V IP+ VG++IG G +K ++ D G +I
Sbjct: 6 DVPIPRF------AVGIVIGRNGEMIKKIQNDAGVRIQ-----------------FKPDD 42
Query: 259 ENEPLHAYVTAHNPENVKKAVDRLVCLVS 287
P P+ + A + + L+
Sbjct: 43 GTTPERIAQITGPPDRAQHAAEIITDLLR 71
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 36.8 bits (85), Expect = 4e-04
Identities = 13/92 (14%), Positives = 21/92 (22%), Gaps = 29/92 (31%)
Query: 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKS-MEKDTGAKIIIRGKGSVKEGKVGRKDGQ 254
V P H I IG +G L ++ I
Sbjct: 21 TVSSVAAPSWLHRFI------IGKKGQNLAKITQQMPKVHIEFTEGE------------- 61
Query: 255 PLPGENEPLHAYVTAHNPENVKKAVDRLVCLV 286
E+V A +++ +V
Sbjct: 62 ---------DKITLEGPTEDVSVAQEQIEGMV 84
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 37.0 bits (86), Expect = 4e-04
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 213 VGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
G +IG G +++E+ T I + G
Sbjct: 24 KGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIG 57
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 36.1 bits (83), Expect = 6e-04
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQ 254
++MIP GL+IG G T+K +++ G K+++ G
Sbjct: 7 NAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDG------------- 47
Query: 255 PLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSAR 289
P +P V++A + ++ L+ +
Sbjct: 48 --PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 80
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 35.5 bits (82), Expect = 6e-04
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGS 242
+ + ++++ E VG +IG +G ++K M +++GA+I I
Sbjct: 2 VTLTIRLLMHGKE------VGSIIGKKGESVKKMREESGARINISEGNC 44
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 35.6 bits (82), Expect = 6e-04
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 20/84 (23%)
Query: 199 KVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPG 258
++P GL+IG G T+KS+ + +GA+I + P P
Sbjct: 4 NFIVPT------GKTGLIIGKGGETIKSISQQSGARIEL--------------QRNPPPN 43
Query: 259 ENEPLHAYVTAHNPENVKKAVDRL 282
+ + + P+ + A +
Sbjct: 44 ADPNMKLFTIRGTPQQIDYARQLI 67
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 35.1 bits (81), Expect = 0.001
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 211 NFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVK 244
V +IG +G+ +K ++ + +I++ G +
Sbjct: 10 ARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIW 43
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 33.3 bits (76), Expect = 0.005
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 26/93 (27%)
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKS-MEKDTGAKIIIRGKGSVKEGKVGRKDG 253
+V IP H LIG +G ++S ME+ G I
Sbjct: 9 IAEVEVSIPAKLH------NSLIGTKGRLIRSIMEECGGVHIHF---------------- 46
Query: 254 QPLPGENEPLHAYVTAHNPENVKKAVDRLVCLV 286
P E V +V+KA +L+ L
Sbjct: 47 ---PVEGSGSDTVVIRGPSSDVEKAKKQLLHLA 76
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor
GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 39
Score = 31.2 bits (71), Expect = 0.011
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 40 EGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCG 73
E C NCGA+ W + + T LC++CG
Sbjct: 1 EARECVNCGATATPLW----RRDRTGHYLCNACG 30
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse
mammary tumor virus [TaxId: 11757]}
Length = 26
Score = 30.8 bits (69), Expect = 0.013
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 68 LCSSCGGAGHIARDCREK 85
+C SCG GHI RDC+E+
Sbjct: 4 VCFSCGKTGHIKRDCKEE 21
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 362
Score = 32.3 bits (72), Expect = 0.057
Identities = 14/94 (14%), Positives = 29/94 (30%)
Query: 89 MGGPPANTHRNRAKIDEEYMSLMAELGEGPPPDKRQRDNDSYRKNNTSGSLSPSPEPIYS 148
G + ++ G P R+ R S L + +
Sbjct: 224 TGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKF 283
Query: 149 SDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPE 182
+ + T +Y+ K +E D + M +++P
Sbjct: 284 WPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPR 317
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency
virus type 2 [TaxId: 11709]}
Length = 29
Score = 27.8 bits (62), Expect = 0.12
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 69 CSSCGGAGHIARDCREKR 86
C +CG GH AR CR R
Sbjct: 9 CWNCGKEGHSARQCRAPR 26
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine
leukemia virus, MoMLV [TaxId: 11801]}
Length = 40
Score = 27.3 bits (60), Expect = 0.29
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 69 CSSCGGAGHIARDCREKRPGMGGPPANT 96
C+ C GH A+DC +K G GP T
Sbjct: 13 CAYCKEKGHWAKDCPKKPRGPRGPRPQT 40
>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9
{Human (Homo sapiens) [TaxId: 9606]}
Length = 318
Score = 29.1 bits (64), Expect = 0.68
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 110 LMAELGEGPPPDKRQRDNDSYRK-NNTSGSLSPSPEPIYSS----------DGKRMNTRE 158
+MAE+ P + + + GS++P P + G++ ++
Sbjct: 211 IMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKD 270
Query: 159 YRTRKKLEEERHDLIQKMFKVNPE 182
+ DLI K+ ++P
Sbjct: 271 RLKAYVRDPYALDLIDKLLVLDPA 294
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 29.1 bits (64), Expect = 0.72
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 110 LMAELGEGPPPDKRQRDNDSYRK-NNTSGSLSPSPEPIYSSDGKRMNTREYRTR------ 162
++AEL P D D + T G+ + P S + + +
Sbjct: 190 ILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIF 249
Query: 163 KKLEEERHDLIQKMFKVNPEFKP 185
++ DLIQ +F NP +
Sbjct: 250 SAAGDDLLDLIQGLFLFNPCARI 272
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 10, ZMYND10 {Human (Homo sapiens) [TaxId:
9606]}
Length = 47
Score = 25.7 bits (56), Expect = 1.2
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 14/46 (30%)
Query: 40 EGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREK 85
E PRC C A K CS C + R+C+ K
Sbjct: 7 ERPRCAYCSAEASK--------------RCSRCQNEWYCCRECQVK 38
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 27.6 bits (60), Expect = 2.0
Identities = 22/102 (21%), Positives = 29/102 (28%), Gaps = 19/102 (18%)
Query: 110 LMAELGEGPPPDKRQRDNDSYRKNNTSGSLSPSPEPIYS---------SDGKRMNTREYR 160
+ AEL P D D K +P+ E S T
Sbjct: 191 IFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVN 250
Query: 161 TRKKLEEERHDLIQKMFKVNPEFKPPP----------DYKPP 192
KL DL+Q + K NP + D+ PP
Sbjct: 251 VVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFCPP 292
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 305
Score = 27.2 bits (59), Expect = 2.5
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 110 LMAELGEGPPPDKRQRDNDSYRK-NNTSGSLSPSPEPIYSSDGKRMNTRE-----YRTRK 163
+ AE+ P + D D K + G P + ++ + +
Sbjct: 204 IFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVT 263
Query: 164 KLEEERHDLIQKMFKVNPEFKP 185
++E DL+ K NP +
Sbjct: 264 DIDELGKDLLLKCLTFNPAKRI 285
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 355
Score = 27.2 bits (59), Expect = 2.6
Identities = 9/68 (13%), Positives = 19/68 (27%)
Query: 115 GEGPPPDKRQRDNDSYRKNNTSGSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQ 174
G P + + +N + + + K + DL+
Sbjct: 233 QLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLS 292
Query: 175 KMFKVNPE 182
KM ++P
Sbjct: 293 KMLVIDPA 300
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase
33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 25.3 bits (55), Expect = 3.6
Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 10/41 (24%)
Query: 33 KGTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCG 73
K L + C +C W C L + C
Sbjct: 15 KEDLIQKSLGTCQDCKVQGPNLWAC----------LENRCS 45
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 26.5 bits (58), Expect = 4.0
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 18/76 (23%)
Query: 110 LMAELGEGPPPDKRQRDNDSYRKNNTSGSLSPSPEPIYSSDGKRMNTREYRTRKKLEEER 169
+ E+ EG PP + + T+G+ S+ +
Sbjct: 205 MAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFR----------------- 247
Query: 170 HDLIQKMFKVNPEFKP 185
D + + ++ E +
Sbjct: 248 -DFLNRCLDMDVEKRG 262
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor
GATA-1 {Emericella nidulans [TaxId: 162425]}
Length = 42
Score = 23.6 bits (51), Expect = 4.9
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 44 CTNCGASDHKSWLCPDKPNITNSTLCSSCG 73
CTNC W + N LC++CG
Sbjct: 3 CTNCFTQTTPLW----RRNPEGQPLCNACG 28
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
falciparum) [TaxId: 5833]}
Length = 286
Score = 26.4 bits (57), Expect = 4.9
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 110 LMAELGEGPPPDKRQRDNDSYRK-NNTSGSLSPSPEPIYSSDGKRMNTREYRTR------ 162
+ AE+ G P + D + G+ + P + K
Sbjct: 190 IFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESF 249
Query: 163 -KKLEEERHDLIQKMFKVNPEFKPPPD 188
K L+E DL+ KM K++P +
Sbjct: 250 LKGLDESGIDLLSKMLKLDPNQRITAK 276
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 25.8 bits (56), Expect = 7.8
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 104 DEEYMSLMAELGEGPPPDKRQRDNDSYRKNNTSGSLSPSPEPIYSSDGKRMNTREYRTR- 162
+E + EG + R R ++ G S P I+ +N +
Sbjct: 208 AKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPS 267
Query: 163 KKLEEERHDLIQKMFKVNPEFKPPPD 188
E D + K NP +
Sbjct: 268 GVFSLEFQDFVNKCLIKNPAERADLK 293
>d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis,
brefeldin A esterase [TaxId: 1423]}
Length = 358
Score = 25.5 bits (54), Expect = 8.8
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 24/101 (23%)
Query: 87 PGMGGPPANTHRNRAKIDEEYMSLMAELGEGPPPDKRQRDNDS---------------YR 131
PG G ++ R + + +A G ++
Sbjct: 1 PGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDLPTVLAAVGASHDGFQ 60
Query: 132 KNNTSGSLSPSPEP---------IYSSDGKRMNTREYRTRK 163
S +L + I DG + +R
Sbjct: 61 AVYDSIALDLPTDRDDVETSTETILGVDGNEITLHVFRPAG 101
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 298
Score = 25.2 bits (54), Expect = 9.7
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 8/87 (9%)
Query: 110 LMAELGEGPPPDKRQRDNDSYRKN-NTSGSLSPSPEPIYSSDGKRMNTREYRTRKKLE-- 166
+ AE+ + D + T G+ P +S + R+
Sbjct: 192 IFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKV 251
Query: 167 -----EERHDLIQKMFKVNPEFKPPPD 188
E+ L+ +M +P +
Sbjct: 252 VPPLDEDGRSLLSQMLHYDPNKRISAK 278
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.136 0.422
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,222,008
Number of extensions: 60658
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 65
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.6 bits)