BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17751
         (419 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 32.0 bits (71), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 177 GLAKGWVPTLIGYSIQGYAKFGFYEVFKVKF--ASLVSEESAYKYRTSIYLVSAATAEFI 234
           GL KG  P +   +I   A+   Y++ K     A+L++++         +  SA  A F 
Sbjct: 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDD------LPCHFTSAFGAGFC 215

Query: 235 GDVGLSAFEAIKVK-IQTSPGFANTMMEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVK 293
             V  S  + +K + + ++ G  ++       M ++EG  +F+K  +P  LR   +  V 
Sbjct: 216 TTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVM 275

Query: 294 FVCFER 299
           FV +E+
Sbjct: 276 FVTYEQ 281



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 20/79 (25%)

Query: 54  PLDIVKCRLQVDQEKYRNVMTGFRVTVAEEGLRFRVTVA-------EEGLRGLAKGWVPT 106
           P D+VK R Q                 A  G R++ TV        EEG+RGL KG  P 
Sbjct: 124 PTDVVKVRFQAQAR-------------AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPN 170

Query: 107 LIGYSIQGYAKFGFYEVFK 125
           +   +I   A+   Y++ K
Sbjct: 171 VARNAIVNCAELVTYDLIK 189


>pdb|2FY2|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provide Insight Into Regulation Of Acetylcholine
           Synthesis
 pdb|2FY3|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provides Insight Into Regulation Of Acetylcholine
           Synthesis
 pdb|2FY4|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provide Insight Into Regulation Of Acetylcholine
           Synthesis
 pdb|2FY5|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provide Insight Into Regulation Of Acetylcholine
           Synthesis
          Length = 612

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 255 FANTMMEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVKFVCFERTIELLYKYVVPKPRD 314
            A  M  A+P+M+ +E  Y      V L+  Q+P TT  F C        Y  VVP    
Sbjct: 509 LARAMCAALPEMFMDET-YLMSNRFV-LSTSQVPTTTEMFCC--------YGPVVPNGYG 558

Query: 315 QCSKPEQLVVTF 326
            C  P+   + F
Sbjct: 559 ACYNPQPETILF 570


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 28.9 bits (63), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 32  KYFXXXXXXXXXXXXSTHLLVTPLDIVKCRLQVDQEK--YRNVMTGFRVTVAEEGLRFRV 89
           +YF            ++   V PLD  + RL  D  K   +   TG    + +       
Sbjct: 110 RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK------- 162

Query: 90  TVAEEGLRGLAKGWVPTLIGYSIQGYAKFGFYEVFK 125
               +GLRGL +G+  ++ G  I   A FG Y+  K
Sbjct: 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAK 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,983,883
Number of Sequences: 62578
Number of extensions: 348040
Number of successful extensions: 811
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 8
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)