Query psy17751
Match_columns 419
No_of_seqs 168 out of 2075
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:59:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1E-49 3.6E-54 385.5 23.2 266 33-399 6-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 6.1E-50 2.1E-54 388.3 20.3 263 37-402 4-289 (303)
3 2lck_A Mitochondrial uncouplin 100.0 3.9E-34 1.3E-38 277.1 5.9 210 2-306 63-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 2E-31 6.7E-36 257.3 17.3 180 219-402 5-204 (297)
5 3tgu_G UQCRQ, mitochondrial ub 17.2 72 0.0025 23.5 2.2 43 365-407 32-74 (81)
6 3tgu_G UQCRQ, mitochondrial ub 14.4 1.4E+02 0.0046 22.0 3.1 38 270-307 32-69 (81)
7 1pp9_G Ubiquinol-cytochrome C 13.1 1.3E+02 0.0043 22.1 2.6 43 365-407 32-74 (81)
8 2acm_A Mucin-1; auto-catalytic 10.7 62 0.0021 22.2 0.2 20 257-276 40-59 (66)
9 3f2e_A SIRV coat protein; four 8.4 1.4E+02 0.0047 21.6 1.4 38 250-287 2-43 (100)
10 1tlq_A Hypothetical protein YP 6.3 2.4E+02 0.0082 24.1 2.0 45 195-239 116-160 (189)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1e-49 Score=385.47 Aligned_cols=266 Identities=17% Similarity=0.210 Sum_probs=223.5
Q ss_pred HHHHHhhhhhhhhhhhhcccCchhhhhhHhccCcc--------cccccchhhhhhhhcccccccccccccccccccccch
Q psy17751 33 YFALCGVGGLLACGSTHLLVTPLDIVKCRLQVDQE--------KYRNVMTGFRVTVAEEGLRFRVTVAEEGLRGLAKGWV 104 (419)
Q Consensus 33 ~~~~~~~ag~~a~~~~~~~~~Pld~ik~r~Q~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~G~~gl~rG~~ 104 (419)
.++..+++|+++++++.+++||+|+||+|+|++.. .|++.++++++++++ ||++|||||+.
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------eG~~glyrG~~ 74 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKE-----------QGFLSFWRGNL 74 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHH-----------HCGGGGGTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhc-----------cchhheecccH
Confidence 34567788888999999999999999999999752 578999999999999 99999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhccccchhhhhhhhhhhhhccCCCCCccccccCCcccccccccccchhh
Q psy17751 105 PTLIGYSIQGYAKFGFYEVFKVISSISHRLCRSSGCSILSSLRCRSSSLLNSSGSSSTTLSSSNSTFGCNLVGLAKGWVP 184 (419)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gly~G~~~ 184 (419)
+++++..+..+++|++||.+|.
T Consensus 75 ~~l~~~~~~~~~~f~~ye~~k~---------------------------------------------------------- 96 (297)
T 1okc_A 75 ANVIRYFPTQALNFAFKDKYKQ---------------------------------------------------------- 96 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999966666665554
Q ss_pred hhhhhcccchhhHhhHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHchHHHHHHHHHcCC------CCCCC
Q psy17751 185 TLIGYSIQGYAKFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGDVGLSAFEAIKVKIQTSP------GFANT 258 (419)
Q Consensus 185 ~~~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~Ag~~~~~i~~P~dviktrlq~~~------~~~~~ 258 (419)
.+....+.++.........+++|++||+++.++++|+|+||+|+|++. ..|++
T Consensus 97 ---------------------~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~ 155 (297)
T 1okc_A 97 ---------------------IFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTG 155 (297)
T ss_dssp ---------------------HHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSS
T ss_pred ---------------------HhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCC
Confidence 221111111111223466789999999999999999999999999874 35889
Q ss_pred HHHHHHHHHhhhCcccccccchHHHHHHhhhhhhhHHhHHHHHHHHHhccCCCCCCCCCCCcchHHHHHhhhHHhHhHHh
Q psy17751 259 MMEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVKFVCFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCAV 338 (419)
Q Consensus 259 ~~~~i~~i~k~eG~~gLyrG~~~~llr~~~~~~i~f~~ye~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~ 338 (419)
+++++++++++||+++||||+.+++++.+|..+++|.+||.+|+.+.+. ...+....+++|++||+++++
T Consensus 156 ~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----------~~~~~~~~~~~g~~ag~~a~~ 225 (297)
T 1okc_A 156 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----------KNVHIIVSWMIAQTVTAVAGL 225 (297)
T ss_dssp HHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----------GCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965432 124567789999999999999
Q ss_pred hcCcHHHHHHHHhcCCc------------hHHHHHHHhhCccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17751 339 ASHPPDVIVSQMNQQKD------------VPMATIIRRLGFSGMWSGLAPRIAMIGTIAALQWFIFDGFKVAM 399 (419)
Q Consensus 339 vt~PlDviktr~q~~~~------------~~~~~i~r~eGi~glyrG~~~~l~~~~~~~~i~f~~ye~lk~~l 399 (419)
+++|+||||+|||++.. +|+++|+|+||++|||||+.++++|. +.++++|.+||.+|+++
T Consensus 226 ~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 226 VSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999999998641 79999999999999999999999996 57899999999998753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.1e-50 Score=388.27 Aligned_cols=263 Identities=22% Similarity=0.312 Sum_probs=229.6
Q ss_pred HhhhhhhhhhhhhcccCchhhhhhHhccCcc-----------cccccchhhhhhhhcccccccccccccccccccccchH
Q psy17751 37 CGVGGLLACGSTHLLVTPLDIVKCRLQVDQE-----------KYRNVMTGFRVTVAEEGLRFRVTVAEEGLRGLAKGWVP 105 (419)
Q Consensus 37 ~~~ag~~a~~~~~~~~~Pld~ik~r~Q~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~~G~~gl~rG~~~ 105 (419)
.+++|++|++++.+++||||+||+|+|++.. .|++.++++++++++ ||++|||||+.+
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------eG~~glyrG~~~ 72 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT-----------EGPRSLYNGLVA 72 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHH-----------HCHHHHHSSHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHh-----------hCHHHHHcCCHH
Confidence 3567888888889999999999999999853 588999999999999 999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhccccchhhhhhhhhhhhhccCCCCCccccccCCcccccccccccchhhh
Q psy17751 106 TLIGYSIQGYAKFGFYEVFKVISSISHRLCRSSGCSILSSLRCRSSSLLNSSGSSSTTLSSSNSTFGCNLVGLAKGWVPT 185 (419)
Q Consensus 106 ~~~~~~~~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gly~G~~~~ 185 (419)
++++..+..+++|
T Consensus 73 ~l~~~~~~~~i~f------------------------------------------------------------------- 85 (303)
T 2lck_A 73 GLQRQMSFASVRI------------------------------------------------------------------- 85 (303)
T ss_dssp HHHHHHHHHHHTT-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 9999999999554
Q ss_pred hhhhcccchhhHhhHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHchHHHHHHHHHcCCC-----CCCCHH
Q psy17751 186 LIGYSIQGYAKFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGDVGLSAFEAIKVKIQTSPG-----FANTMM 260 (419)
Q Consensus 186 ~~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~Ag~~~~~i~~P~dviktrlq~~~~-----~~~~~~ 260 (419)
.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|++.. .|++.+
T Consensus 86 ------------~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~ 148 (303)
T 2lck_A 86 ------------GLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTV 148 (303)
T ss_dssp ------------THHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHH
T ss_pred ------------HHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHH
Confidence 445555444432211 1345678999999999999999999999999999863 689999
Q ss_pred HHHHHHHhhhCcccccccchHHHHHHhhhhhhhHHhHHHHHHHHHhccCCCCCCCCCCCcchHHHHHhhhHHhHhHHhhc
Q psy17751 261 EAIPKMYQEEGLYSFFKALVPLALRQIPYTTVKFVCFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCAVAS 340 (419)
Q Consensus 261 ~~i~~i~k~eG~~gLyrG~~~~llr~~~~~~i~f~~ye~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~vt 340 (419)
+++++|+++||+++||||+.+++++.+|..+++|.+||.+|+.+.+.. ....+...++++|++||+++++++
T Consensus 149 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--------~~~~~~~~~~~~g~~ag~~~~~~~ 220 (303)
T 2lck_A 149 EAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--------LMTDDLPCHFTSAFGAGFCTTVIA 220 (303)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--------SCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999876432 123456788999999999999999
Q ss_pred CcHHHHHHHHhcCCc-------hHHHHHHHhhCccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17751 341 HPPDVIVSQMNQQKD-------VPMATIIRRLGFSGMWSGLAPRIAMIGTIAALQWFIFDGFKVAMALP 402 (419)
Q Consensus 341 ~PlDviktr~q~~~~-------~~~~~i~r~eGi~glyrG~~~~l~~~~~~~~i~f~~ye~lk~~l~~~ 402 (419)
+|+|+||+|||.+.. +|+++|+|+||++|||||+.++++|.+|.++++|.+||.+|+.+.+.
T Consensus 221 ~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 221 SPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999753 79999999999999999999999999999999999999999887653
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.9e-34 Score=277.14 Aligned_cols=210 Identities=24% Similarity=0.312 Sum_probs=173.8
Q ss_pred cccccccccccccccccCCCccccccccc----------hhHHHHHhhhhhhhhhhhhcccCchhhhhhHhccCcc----
Q psy17751 2 FRTLFNTHWASCQSQVPSSNEEYSCAFAS----------NKYFALCGVGGLLACGSTHLLVTPLDIVKCRLQVDQE---- 67 (419)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ag~~a~~~~~~~~~Pld~ik~r~Q~~~~---- 67 (419)
+|+||||+.+++...+|.....+.. ++. .......+++|+++++++.++++|+|+||+|+|++..
T Consensus 63 ~~glyrG~~~~l~~~~~~~~i~f~~-ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~ 141 (303)
T 2lck_A 63 PRSLYNGLVAGLQRQMSFASVRIGL-YDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGG 141 (303)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHTTTH-HHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCC
Confidence 5789999999999888876543321 111 1234566788899999999999999999999999864
Q ss_pred -cccccchhhhhhhhcccccccccccccccccccccchHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhccccchhhhh
Q psy17751 68 -KYRNVMTGFRVTVAEEGLRFRVTVAEEGLRGLAKGWVPTLIGYSIQGYAKFGFYEVFKVISSISHRLCRSSGCSILSSL 146 (419)
Q Consensus 68 -~~~~~~~~~~~i~~~~~~~~~~~~~~~G~~gl~rG~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 146 (419)
.|++.++++++|+++ ||++|||||+.|++++..+..+++|.+||.+|..
T Consensus 142 ~~~~~~~~~~~~i~~~-----------eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~------------------- 191 (303)
T 2lck_A 142 RRYQSTVEAYKTIARE-----------EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDT------------------- 191 (303)
T ss_dssp SSCCCHHHHHHHHHHH-----------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred CCCCCHHHHHHHHHHh-----------cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 588999999999999 9999999999999999999999666666665543
Q ss_pred hhhhhhhhccCCCCCccccccCCcccccccccccchhhhhhhhcccchhhHhhHHHHHHHHhhhhccccccchhhHHHHH
Q psy17751 147 RCRSSSLLNSSGSSSTTLSSSNSTFGCNLVGLAKGWVPTLIGYSIQGYAKFGFYEVFKVKFASLVSEESAYKYRTSIYLV 226 (419)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gly~G~~~~~~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (419)
+.+.... ..+....++
T Consensus 192 ------------------------------------------------------------l~~~~~~----~~~~~~~~~ 207 (303)
T 2lck_A 192 ------------------------------------------------------------LLKANLM----TDDLPCHFT 207 (303)
T ss_dssp ------------------------------------------------------------TTTTTSC----CSCHHHHHH
T ss_pred ------------------------------------------------------------HHhccCC----CCchHHHHH
Confidence 2221111 123456789
Q ss_pred HHHHHHHHHHHHHchHHHHHHHHHcCC-CCCCCHHHHHHHHHhhhCcccccccchHHHHHHhhhhhhhHHhHHHHHHHHH
Q psy17751 227 SAATAEFIGDVGLSAFEAIKVKIQTSP-GFANTMMEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVKFVCFERTIELLY 305 (419)
Q Consensus 227 ag~~Ag~~~~~i~~P~dviktrlq~~~-~~~~~~~~~i~~i~k~eG~~gLyrG~~~~llr~~~~~~i~f~~ye~lk~~l~ 305 (419)
+|++||+++.++++|+|+||+|+|++. ..|+++++++++++++||++|||||+.++++|.+|..+++|.+||.+|+.+.
T Consensus 208 ~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 208 SAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985 4689999999999999999999999999999999999999999999998664
Q ss_pred h
Q psy17751 306 K 306 (419)
Q Consensus 306 ~ 306 (419)
+
T Consensus 288 ~ 288 (303)
T 2lck_A 288 A 288 (303)
T ss_dssp C
T ss_pred H
Confidence 3
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.97 E-value=2e-31 Score=257.35 Aligned_cols=180 Identities=15% Similarity=0.224 Sum_probs=157.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHchHHHHHHHHHcCC--------CCCCCHHHHHHHHHhhhCcccccccchHHHHHHhhhh
Q psy17751 219 YRTSIYLVSAATAEFIGDVGLSAFEAIKVKIQTSP--------GFANTMMEAIPKMYQEEGLYSFFKALVPLALRQIPYT 290 (419)
Q Consensus 219 ~~~~~~~~ag~~Ag~~~~~i~~P~dviktrlq~~~--------~~~~~~~~~i~~i~k~eG~~gLyrG~~~~llr~~~~~ 290 (419)
.+....+++|++||+++.++++|+|++|+|+|++. ..|+++++++++++++||+++||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 34567899999999999999999999999999874 2689999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHHHHhccCCCCCCCCCCCcchHHHHHhhhHHhHhHHhhcCcHHHHHHHHhcCCc------------hHH
Q psy17751 291 TVKFVCFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCAVASHPPDVIVSQMNQQKD------------VPM 358 (419)
Q Consensus 291 ~i~f~~ye~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~vt~PlDviktr~q~~~~------------~~~ 358 (419)
+++|.+||.+|+.+..... ++.........++++|++||++++++++|+|+||+|+|++.. +++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~----~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVD----RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC----TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHhccccC----cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 9999999999996543210 000111235678999999999999999999999999998731 789
Q ss_pred HHHHHhhCccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17751 359 ATIIRRLGFSGMWSGLAPRIAMIGTIAALQWFIFDGFKVAMALP 402 (419)
Q Consensus 359 ~~i~r~eGi~glyrG~~~~l~~~~~~~~i~f~~ye~lk~~l~~~ 402 (419)
++|+|+||++|||||+.++++|.+|.+++.|.+||.+|+.+.+.
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999987543
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=17.20 E-value=72 Score=23.47 Aligned_cols=43 Identities=5% Similarity=0.158 Sum_probs=34.4
Q ss_pred hCccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy17751 365 LGFSGMWSGLAPRIAMIGTIAALQWFIFDGFKVAMALPRPPPP 407 (419)
Q Consensus 365 eGi~glyrG~~~~l~~~~~~~~i~f~~ye~lk~~l~~~~~~~~ 407 (419)
.|+...+|-+..++...+|..++.+.+|+..++.-+....+.+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnp 74 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNP 74 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCG
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4566677778888999999999999999999888776665443
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=14.43 E-value=1.4e+02 Score=21.96 Aligned_cols=38 Identities=5% Similarity=0.166 Sum_probs=29.8
Q ss_pred hCcccccccchHHHHHHhhhhhhhHHhHHHHHHHHHhc
Q psy17751 270 EGLYSFFKALVPLALRQIPYTTVKFVCFERTIELLYKY 307 (419)
Q Consensus 270 eG~~gLyrG~~~~llr~~~~~~i~f~~ye~lk~~l~~~ 307 (419)
.|+...+|-+...++..+|..++.+.+|+..++.....
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35555666677888889999999999999999876543
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=13.12 E-value=1.3e+02 Score=22.13 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=34.3
Q ss_pred hCccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy17751 365 LGFSGMWSGLAPRIAMIGTIAALQWFIFDGFKVAMALPRPPPP 407 (419)
Q Consensus 365 eGi~glyrG~~~~l~~~~~~~~i~f~~ye~lk~~l~~~~~~~~ 407 (419)
.|+...+|-+.-+++..+|..++.+.+|+..++.-+....+.+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp 74 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNP 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4566677778888889999999999999999888766665443
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=10.73 E-value=62 Score=22.23 Aligned_cols=20 Identities=15% Similarity=0.424 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHhhhCccccc
Q psy17751 257 NTMMEAIPKMYQEEGLYSFF 276 (419)
Q Consensus 257 ~~~~~~i~~i~k~eG~~gLy 276 (419)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45778899999999998886
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=8.41 E-value=1.4e+02 Score=21.62 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=21.9
Q ss_pred HcCCCCCCCHHHHHHHHHhhhCc----ccccccchHHHHHHh
Q psy17751 250 QTSPGFANTMMEAIPKMYQEEGL----YSFFKALVPLALRQI 287 (419)
Q Consensus 250 q~~~~~~~~~~~~i~~i~k~eG~----~gLyrG~~~~llr~~ 287 (419)
|.+-.++.++-+-...++.+-|+ +.+|.|++..+.|..
T Consensus 2 qtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 2 QTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp ------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 44445566666666667777775 467888887776554
No 10
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=6.26 E-value=2.4e+02 Score=24.09 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=26.1
Q ss_pred hhHhhHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHH
Q psy17751 195 AKFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGDVGL 239 (419)
Q Consensus 195 ~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~Ag~~~~~i~ 239 (419)
..|+-+|..|--+....+++....+.+...+++|.+|++++.+..
T Consensus 116 tNfGylDk~KpGIi~~Ld~k~~~v~tFLDDiVgaiaAaaaSRlah 160 (189)
T 1tlq_A 116 TNFGYLDKEKIGIIKELDESPDGIHTFLDDIVAALAAAAASRIAH 160 (189)
T ss_dssp HHHHHHHHSCCTHHHHTSSSCSCCCTTHHHHHHHHHHHHHHHHHT
T ss_pred eecccccccCcceeccccCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 455555555533322223222225677888888888888876654
Done!