RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17751
(419 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 79.6 bits (197), Expect = 2e-18
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 30 SNKYFALCGVGGLLACGSTHLLVTPLDIVKCRLQVDQEKYRNVMTGFRVTVAEEGLRFRV 89
S F + G +A + PLD+VK RLQ G F+
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDC-------FKK 53
Query: 90 TVAEEGLRGLAKGWVPTLIGYSIQGYAKFGFYEVFK 125
EEG+RGL KG +P L+ + FG YE K
Sbjct: 54 IYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLK 89
Score = 60.3 bits (147), Expect = 1e-11
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 224 YLVSAATAEFIGDVGLSAFEAIKVKIQTSPGFA----NTMMEAIPKMYQEEGLYSFFKAL 279
L++ A I + +K ++Q+S +++ K+Y+EEG+ +K L
Sbjct: 8 SLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGL 67
Query: 280 VPLALRQIPYTTVKFVCFERTIELLYKY 307
+P LR P + F +E +LL K
Sbjct: 68 LPNLLRVAPAAAIYFGTYETLKKLLLKK 95
Score = 46.1 bits (110), Expect = 1e-06
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 322 LVVTFSAGYIAGIFCAVASHPPDVIVSQMNQQKDVPMA----------TIIRRLGFSGMW 371
+ + AG IAG A ++P DV+ +++ I + G G++
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64
Query: 372 SGLAPRIAMIGTIAALQWFIFDGFK 396
GL P + + AA+ + ++ K
Sbjct: 65 KGLLPNLLRVAPAAAIYFGTYETLK 89
Score = 36.1 bits (84), Expect = 0.004
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 177 GLAKGWVPTLIGYSIQGYAKFGFYEVFKVKF 207
GL KG +P L+ + FG YE K
Sbjct: 62 GLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 51.1 bits (122), Expect = 3e-07
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 159 SSSTTLSSSNSTFGCNLVGLAKGWVPTLIGYSIQGYAKFGFYEVFKVKFASLVSEESAYK 218
S T + + S ++ L G +PTL+G + FYE+ K L++E
Sbjct: 26 SIKTNIQAKKSFSFSDIKKLYSGILPTLVGTVPASAFFYCFYELSK----KLLTEYRENI 81
Query: 219 YRTSIYLVSAATAEFIGDVGLSAFEAIKVKIQTSPGFANTMMEAIPKMYQEEGLYSFF-K 277
+T++YL+S + AE + FE +K +Q S ++++ I ++ Q EGL SF K
Sbjct: 82 SKTNLYLISTSIAEITACIVRLPFEIVKQNMQVSGN--ISVLKTIYEITQREGLPSFLGK 139
Query: 278 ALVPLALRQIPYTTVKFVCFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCA 337
+ + +R+IP+ +++ +E K K + SK + + G +AG
Sbjct: 140 SYFVMIVREIPFDCIQYFLWET-----LKEKAKKDFGKFSKKYPSITSAICGGLAGGIAG 194
Query: 338 VASHPPDVIVSQ 349
+ P DVI S+
Sbjct: 195 FLTTPVDVIKSR 206
>gnl|CDD|211397 cd11559, W2_eIF4G1_like, C-terminal W2 domain of eukaryotic
translation initiation factor 4 gamma 1 and similar
proteins. eIF4G1 is a component of the multi-subunit
eukaryotic translation initiation factor 4F, which
facilitates recruitment of the mRNA to the ribosome, a
rate-limiting step during translation initiation. This
C-terminal domain, whose structure resembles that of a
set of concatenated HEAT repeats, has been associated
with binding to/recruiting the kinase Mnk1, which
phosphorylates eIF4E.
Length = 134
Score = 29.6 bits (67), Expect = 1.6
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 28/111 (25%)
Query: 243 EAIKVKIQTSPGFANTMMEAIPK-MYQEEGLYSFFKALVPLALRQIPYTTVKFVCFERTI 301
E + ++ SPGF +M A+ K +E+ L KAL E+
Sbjct: 29 ENVSPELYASPGFVRALMTAVLKYAIEEKSLPEKEKAL-----------------LEKYA 71
Query: 302 ELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCAVASHPPDVIVSQMNQ 352
LL KY+ + Q A Y P +++ +
Sbjct: 72 PLLQKYLDDDEQLQL----------QALYALQALVHTLEFPKGLLLRFFDA 112
>gnl|CDD|234359 TIGR03802, Asp_Ala_antiprt, aspartate-alanine antiporter. All
members of the seed alignment for this model are
asparate-alanine anti-transporters (AspT) encoded next
to the gene for aspartate 4-decarboxylase (AspD), which
converts asparate to alanine, releasing CO2. The
exchange of Asp for Ala is electrogenic, so the
AspD/AspT system confers a proton-motive force. This
transporter contains two copies of the AspT/YidE/YbjL
antiporter duplication domain (TIGR01625).
Length = 562
Score = 30.7 bits (70), Expect = 1.7
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 229 ATAEFIGDVGLSAFEAIKVKIQTSPGFANTMME 261
+ + + D+GL+ F A+ V + P + E
Sbjct: 444 SASWLLKDLGLALFIAV-VGLSAGPQAVTAIKE 475
>gnl|CDD|187684 cd09626, DOMON_glucodextranase_like, DOMON-like domain of various
glycoside hydrolases. This DOMON-like domain is found
at the C-terminus of various bacterial proteins that
play roles in metabolizing carbohydrates, such as
glucodextranase (hydrolyzes alpha-1,6-glucosidic
linkages of dextran from the non-reducing end), glucan
alpha-1,4-glucosidase, pullulanase (degrades pullulan,
a polysaccharide built from maltotriose units),
arabinogalactan endo-1,4-beta-galactosidase, and
others. Consequently, the DOMON-like domains in this
family co-occur with catalytic domains from various
glycosyl hydrolase families. The precise function of
the DOMON domains in these proteins is not clear, they
may be involved in interactions with carbohydrates.
Length = 220
Score = 30.0 bits (68), Expect = 2.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 73 MTGFRVTVAEEGLRFRVTVAE 93
+TGF V A + RFRV +A
Sbjct: 32 LTGFTVYEAGDKYRFRVKLAL 52
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 30.0 bits (67), Expect = 2.2
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 309 VPKPRDQCSKPEQLVVTFSAGY-IAGIFCAVASHPPDVIVSQMNQQKDVPMATIIRRL 365
V + K ++V SAG AG FCA+ D+ +S+ N++ +P+ +I+R L
Sbjct: 219 VDIKGENIVKEPPILVHCSAGLDRAGAFCAI-----DICISKYNERAIIPLLSIVRDL 271
>gnl|CDD|165330 PHA03033, PHA03033, hypothetical protein; Provisional.
Length = 142
Score = 28.4 bits (63), Expect = 4.2
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 194 YAKFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGDV--------GLSAFEAI 245
Y K + + ++K E AY Y+ + Y++ A++I D+ L F+ I
Sbjct: 40 YIKKKYNSIKELKKQKKKKGEVAYIYKNNKYIIYIIIADYIEDIVDDINILRALDNFKEI 99
Query: 246 --KVKIQTSPGFANTMMEAIPKMYQEEGLYSFFKALVP 281
K KI + M+ I Y+ + L + + +P
Sbjct: 100 IEKDKIADI----MSHMKFIEDNYETDKLLKYIRDHIP 133
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 28.5 bits (64), Expect = 8.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 371 WSGLAPRIAMIGTIAALQWFIFD 393
WSGL + ++ I AL +F FD
Sbjct: 4 WSGLLGFLIIVAVILALLYFFFD 26
>gnl|CDD|218678 pfam05656, DUF805, Protein of unknown function (DUF805). This
family consists of several bacterial proteins of unknown
function.
Length = 112
Score = 26.9 bits (60), Expect = 9.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 356 VPM-ATIIRRL---GFSGMWSGLAPRIAMIGTIAALQWFIFDG 394
+P A +RRL G SG W L I +IG I L + G
Sbjct: 58 IPSLAVTVRRLHDTGRSGWWL-LLLLIPLIGFIVLLVLLLLPG 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.410
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,061,208
Number of extensions: 2021407
Number of successful extensions: 1716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1710
Number of HSP's successfully gapped: 22
Length of query: 419
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 320
Effective length of database: 6,546,556
Effective search space: 2094897920
Effective search space used: 2094897920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.8 bits)