RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17751
(419 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 95.8 bits (239), Expect = 2e-22
Identities = 40/233 (17%), Positives = 80/233 (34%), Gaps = 27/233 (11%)
Query: 177 GLAKGWVPTLIGYSIQGYAKFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGD 236
L G V L + G Y+ K + L++ +T +
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSR-----LLAGSTTGALAV 119
Query: 237 VGLSAFEAIKVKIQ------TSPGFANTMMEAIPKMYQEEGLYSFFKALVPLALRQIPYT 290
+ +KV+ Q + + +EA + +EEG+ +K P R
Sbjct: 120 AVAQPTDVVKVRFQAQARAGGGRRYQS-TVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 291 TVKFVCFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCAVASHPPDVIVSQ- 349
+ V ++ + L K + + L F++ + AG V + P DV+ ++
Sbjct: 179 CAELVTYDLIKDTLLKANL--------MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY 230
Query: 350 MNQQKDVP------MATIIRRLGFSGMWSGLAPRIAMIGTIAALQWFIFDGFK 396
MN T++R+ G + G P +G+ + + ++ K
Sbjct: 231 MNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLK 283
Score = 86.6 bits (215), Expect = 3e-19
Identities = 60/304 (19%), Positives = 97/304 (31%), Gaps = 49/304 (16%)
Query: 34 FALCGVGGLLACGSTHLLVTPLDIVKCRLQVDQEKYRNVMTGFRVTVAEEGLRFRVTVAE 93
F G +A T PLD K RLQ+ E V T V
Sbjct: 5 FLGAGTAACIADLITF----PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 94 EGLRGLAKGWVPTLIGYSIQGYAKFGFYEVF-KVISSISHRLCRSSGCSILSSLRCRSSS 152
EG R L G V L + G Y+ + + S G +L+
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA--GIGSRLLAGS------ 112
Query: 153 LLNSSGSSSTTLSSS--------------------NSTFGC--------NLVGLAKGWVP 184
++G+ + ++ ST + GL KG P
Sbjct: 113 ---TTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSP 169
Query: 185 TLIGYSIQGYAKFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGDVGLSAFEA 244
+ +I A+ Y++ K + + + + SA A F V S +
Sbjct: 170 NVARNAIVNCAELVTYDLIK----DTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDV 225
Query: 245 IKVKIQTSPGFA-NTMMEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVKFVCFERTIEL 303
+K + S ++ M ++EG +F+K +P LR + V FV +E+
Sbjct: 226 VKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRA 285
Query: 304 LYKY 307
L
Sbjct: 286 LMAA 289
Score = 75.8 bits (187), Expect = 2e-15
Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 31/177 (17%)
Query: 242 FEAIKVKIQTS-----------PGFANTMMEAIPKMYQEEGLYSFFKALVPLALRQIPYT 290
+ KV++Q ++ I M + EG S + LV RQ+ +
Sbjct: 22 LDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFA 81
Query: 291 TVKFVCFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCAVASHPPDVIVSQM 350
+V+ ++ + K S+ + AG G + P DV+ +
Sbjct: 82 SVRIGLYDSVKQFYTKG---------SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRF 132
Query: 351 NQQKDVP-----------MATIIRRLGFSGMWSGLAPRIAMIGTIAALQWFIFDGFK 396
Q TI R G G+W G +P +A + + +D K
Sbjct: 133 QAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIK 189
Score = 39.6 bits (93), Expect = 0.001
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 17/103 (16%)
Query: 322 LVVTFSAGYIAGIFCAVASHPPDVIVSQMNQQKDVP-----------------MATIIRR 364
+ V F A + + P D ++ Q + + T++R
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 365 LGFSGMWSGLAPRIAMIGTIAALQWFIFDGFKVAMALPRPPPP 407
G +++GL + + A+++ ++D K
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG 103
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 76.5 bits (189), Expect = 9e-16
Identities = 36/246 (14%), Positives = 77/246 (31%), Gaps = 41/246 (16%)
Query: 175 LVGLAKGWVPTLIGYSIQGYAKFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFI 234
+ +G + +I Y F F + +K F V + + L S A
Sbjct: 66 FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAA--- 122
Query: 235 GDVGLSA------FEAIKVKIQTSPGFA------NTMMEAIPKMYQEEGLYSFFKALVPL 282
G ++ + + ++ G + I K+++ +GL ++
Sbjct: 123 ---GATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 179
Query: 283 ALRQIPYTTVKFVCFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCAVASHP 342
I Y F ++ K ++P P++ ++V++ + S+P
Sbjct: 180 VQGIIIYRAAYFGVYD-----TAKGMLPDPKNV-----HIIVSWMIAQTVTAVAGLVSYP 229
Query: 343 PDVIVSQMNQQKDVP------------MATIIRRLGFSGMWSGLAPRIAMIGTIAALQWF 390
D + +M Q I + G + G + + G A
Sbjct: 230 FDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV-LRGMGGAFVLV 288
Query: 391 IFDGFK 396
++D K
Sbjct: 289 LYDEIK 294
Score = 69.2 bits (170), Expect = 2e-13
Identities = 56/321 (17%), Positives = 101/321 (31%), Gaps = 80/321 (24%)
Query: 32 KYFALCGVGGLLACGSTHLLVTPLDIVKCRLQV--------DQEKYRNVMTGFRVTVAEE 83
K F GV A T V P++ VK LQV +++Y+ ++ E+
Sbjct: 9 KDFLAGGVAA--AISKT--AVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 84 GLRFRVTVAEEGLRGLAKGWVPTLIGYSIQGYAKFGFYEVFKVISSISHRLCRSSGCSIL 143
G +G + +I Y F F + +K I + R
Sbjct: 65 GFL-----------SFWRGNLANVIRYFPTQALNFAFKDKYKQI--FLGGVDRHKQFWRY 111
Query: 144 SSLRCRSSSLLNSSGSSSTT-----------LSSSNSTFGCN------------------ 174
+ S +G++S L++
Sbjct: 112 FAGNLASGGA---AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDG 168
Query: 175 LVGLAKGWVPTLIGYSIQGYA--KFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAE 232
L GL +G+ ++ G I Y FG Y+ K I +VS A+
Sbjct: 169 LRGLYQGFNVSVQGIII--YRAAYFGVYDTAKGMLPD--------PKNVHI-IVSWMIAQ 217
Query: 233 FIGDVGLSA---FEAIKVKIQTSPGFA------NTMMEAIPKMYQEEGLYSFFKALVPLA 283
+ V F+ ++ ++ G ++ K+ ++EG +FFK
Sbjct: 218 TVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV 277
Query: 284 LRQIPYTTVKFVCFERTIELL 304
LR + V V ++ + +
Sbjct: 278 LRGMGGAFV-LVLYDEIKKFV 297
Score = 58.0 bits (141), Expect = 1e-09
Identities = 30/189 (15%), Positives = 69/189 (36%), Gaps = 30/189 (15%)
Query: 242 FEAIKVKIQTSPGFANT--------MMEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVK 293
E +K+ +Q +++ + ++ +E+G SF++ + +R P +
Sbjct: 28 IERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALN 87
Query: 294 FVCFERTIELLYKYVVPKPRDQCSKPEQLVVT-FSAGYIAGIFCAVASHPPDVI------ 346
F ++ YK + D+ + + ++G AG +P D
Sbjct: 88 FAFKDK-----YKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA 142
Query: 347 -VSQMNQQKDVP-----MATIIRRLGFSGMWSGLAPRIAMIGTI--AALQWFIFDGFKVA 398
V + Q++ + I + G G++ G ++ G I A + ++D K
Sbjct: 143 DVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNV--SVQGIIIYRAAYFGVYDTAKGM 200
Query: 399 MALPRPPPP 407
+ P+
Sbjct: 201 LPDPKNVHI 209
Score = 57.3 bits (139), Expect = 2e-09
Identities = 35/164 (21%), Positives = 52/164 (31%), Gaps = 36/164 (21%)
Query: 19 SSNEEYSCAFASN--------KYFALCGVGGLLACGSTHLLVTPLDIVKCRLQVDQEKYR 70
+ ++Y F +YFA G A ++ V PLD + RL D K
Sbjct: 89 AFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA 148
Query: 71 NVM--TGFRVTVAEEGLRFRVTVAEEGLRGLAKGWVPTLIGYSIQGYA--KFGFYEVFKV 126
TG +GLRGL +G+ ++ G I Y FG Y+ K
Sbjct: 149 AQREFTGLGNC-------ITKIFKSDGLRGLYQGFNVSVQGIII--YRAAYFGVYDTAK- 198
Query: 127 ISSISHRLCRSSGCSILSSLRCRSSSLLNSSGSSSTTLSSSNST 170
L I+ S + T ++ S
Sbjct: 199 -----GMLPDPKNVHIIVSWMI---------AQTVTAVAGLVSY 228
Score = 30.7 bits (70), Expect = 0.79
Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 14/111 (12%)
Query: 323 VVTFSAGYIAGIFCAVASHPPDVI-----VSQMNQQKDVP---------MATIIRRLGFS 368
+ F AG +A A P + + V ++Q + I + GF
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 369 GMWSGLAPRIAMIGTIAALQWFIFDGFKVAMALPRPPPPEMPESMKRQLMS 419
W G + AL + D +K + L S
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLAS 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 5e-05
Identities = 58/359 (16%), Positives = 97/359 (27%), Gaps = 146/359 (40%)
Query: 113 QGYAKFG----FYEVFKVISSISHRLCRSSGCSILSSLRCRSSSLLNSSGSSSTTLSSSN 168
QG + G Y+ K + +R ++ G S + +N
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNH---------------FKDTYGFSILDIVINN 1668
Query: 169 STFGCNLVGLAKGWVPTLIGYSI-QGYAKFGF------YEVFKVKFASLVSEESAYKYR- 220
G KG I + Y+ F + F + ++Y +R
Sbjct: 1669 PVNLTIHFGGEKG-------KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 221 -------TS-----IYLVSAATAEFIGDVGLSAFEAIKVK--IQTSPGFANTMMEAIPKM 266
T + L+ A AFE +K K I FA
Sbjct: 1722 EKGLLSATQFTQPALTLMEKA-----------AFEDLKSKGLIPADATFA---------- 1760
Query: 267 YQEEGL----YSFFKALVPLALRQIPYTTVKFVCFERTIELLYK------YVVPKPRDQC 316
G Y+ AL LA + E +E+++ V PRD+
Sbjct: 1761 ----GHSLGEYA---ALASLA---------DVMSIESLVEVVFYRGMTMQVAV--PRDEL 1802
Query: 317 SK---------PEQLVVTFSAGYIAGIFCAVASHPPDV--IVSQMN-----QQKDVPMAT 360
+ P ++ +FS + + V + IV N QQ
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV---NYNVENQQ------- 1852
Query: 361 IIRRLGFSGMWSGLAPRIAMIGTIAALQWF--IFDGFKV----AMALPRPPPPEMPESM 413
+ A G + AL + + K+ + L + E E
Sbjct: 1853 YV---------------AA--GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 35.8 bits (82), Expect = 0.029
Identities = 42/307 (13%), Positives = 74/307 (24%), Gaps = 111/307 (36%)
Query: 131 SHRLCRS--SGCSIL--SSLRCRSSSLLNSSGSSSTTLSSSNSTFGCNLVGLAKGWVPTL 186
+ L ++ + + + +S+L + G + L + FG G
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV---AIFG----G--------- 162
Query: 187 IGYSIQGYAKFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGDVGLSAFEAIK 246
QG F E L Y+T LV + I + E I+
Sbjct: 163 -----QGNTDDYFEE-----LRDL--------YQTYHVLV----GDLIKFSAETLSELIR 200
Query: 247 VKIQTSPGFANTM--------MEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVKFVCFE 298
+ F + P + +P++ I ++ +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKD--------YLLSIPISCPLI--GVIQLAHYV 250
Query: 299 RTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCAVASHPPDVIVSQMNQQKDVPM 358
T +LL P +L H ++
Sbjct: 251 VTAKLL-----------GFTPGEL---------RSYLKGATGHSQGLVT----------- 279
Query: 359 ATIIRRLGFSGMWSGLAPRIAMIGTIAALQWFIFDGFKVAMALPRP-PPPEM-------- 409
A I + W A+ F G + A P PP +
Sbjct: 280 AVAIAE---TDSWESFF-VSV----RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 410 ---PESM 413
P M
Sbjct: 332 EGVPSPM 338
Score = 35.0 bits (80), Expect = 0.046
Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 25/91 (27%)
Query: 23 EYSCAFASNKYFALCGVGGLLACGSTHLLVTPLDIVKCR---LQVDQEKYRNVMTGFRVT 79
EY+ AL + +++ S +++V R +QV + + + +
Sbjct: 1766 EYA---------ALASLADVMSIESL------VEVVFYRGMTMQVAVPRDELGRSNYGM- 1809
Query: 80 VAEEGLRFRVTVAEEGLRGLAK------GWV 104
+A R + ++E L+ + + GW+
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 50/238 (21%)
Query: 214 ESAYKYRTSIYLVSAATAEFIGDVGLSAFEAIKVKIQTSPGFANTMMEAIPKM-YQEEGL 272
E Y+Y+ ++S F+ + F+ V+ + ++ I G
Sbjct: 13 EHQYQYKD---ILSVFEDAFVDN-----FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 273 YSFFKALVPLALRQIPYTTVK-FVCFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYI 331
F L V+ FV E + + YK+++ + + +P + +
Sbjct: 65 LRLF-----WTLLSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-QR 116
Query: 332 AGIFCAVASHPPDVI------------VSQMNQQKDVP---MA---------------TI 361
++ + + ++ K+V + +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 362 IRRLGFSGMWSGLAPRIAMIGTIAALQ--WFIFDGFKVAMALPRPPPPEMPESMKRQL 417
++ F W L + + LQ + D + + S++ +L
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease,
virulence factor, H; HET: STA; 1.85A {Candida
parapsilosis} PDB: 3tne_A*
Length = 339
Score = 28.8 bits (65), Expect = 3.7
Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 30/145 (20%)
Query: 137 SSGCSILSSLRCRSSSLLNSSGSSSTTLSSSNSTFGCNLVGLAKGWVPTLIGYSIQGYAK 196
S + C+SS S SS + + + F I Y ++
Sbjct: 42 DSNAQCGKGVDCKSSGTFTPSSSS--SYKNLGAAFT--------------IRYGDGSTSQ 85
Query: 197 FGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGDVGLSAFEAIKVKIQTSPGFA 256
G + V + T+ G +G+ + + + TS
Sbjct: 86 -GTWGKDTVTINGVSITG-------QQIADVTQTSVDQGILGI-GYTSNEAVYDTSGRQT 136
Query: 257 NTMMEAIPKMYQEEGL-----YSFF 276
+ +P +++G YS +
Sbjct: 137 TPNYDNVPVTLKKQGKIRTNAYSLY 161
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 28.5 bits (63), Expect = 4.1
Identities = 5/59 (8%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 254 GFANTMMEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVKFVCFERTIELLYKYVVPKP 312
+ M ++ S + LV +++ + + ++ +P
Sbjct: 202 ASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQF-------HSIIDQIATTLNFIQP 253
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 27.8 bits (62), Expect = 7.0
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 17/76 (22%)
Query: 346 IVSQMNQQKDVPMATIIRRLGFSGMWSG-LAPRIAMIGTIAA--------------LQWF 390
I + + + + F +AP A++G I A +F
Sbjct: 272 IRNDVLDSLGISPDLLPED--FVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFF 329
Query: 391 IFDGFKVAMALPRPPP 406
FDG K + P
Sbjct: 330 FFDGMKGNGIVECLGP 345
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.410
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,403,025
Number of extensions: 386313
Number of successful extensions: 748
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 23
Length of query: 419
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 323
Effective length of database: 4,021,377
Effective search space: 1298904771
Effective search space used: 1298904771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)