RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17751
         (419 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 54.3 bits (129), Expect = 8e-09
 Identities = 44/287 (15%), Positives = 83/287 (28%), Gaps = 34/287 (11%)

Query: 39  VGGLLACGSTHLLVTPLDIVKCRLQVDQE--------KYRNVMTGFRVTVAEEGLRFRVT 90
           + G +A   +   V P++ VK  LQV           +Y+ ++        E+G      
Sbjct: 11  LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 70

Query: 91  VAEEGLRGLAKGWVPTLIGYSIQGYAKFGFYEVFKVISSISHRLCRSSGCSILSSLRCRS 150
                +                      G  +  K           S G +  +SL    
Sbjct: 71  GNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVY 130

Query: 151 S-----SLLNSSGSSSTTLSSSNSTFGCN--------LVGLAKGWVPTLIGYSIQGYAKF 197
                 + L +                C         L GL +G+  ++ G  I   A F
Sbjct: 131 PLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYF 190

Query: 198 GFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGDVGLSAFEAIKVKIQTSPGFA- 256
           G Y+  K                  +  + A T   +  +    F+ ++ ++    G   
Sbjct: 191 GVYDTAKGML------PDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG 244

Query: 257 -----NTMMEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVKFVCFE 298
                   ++   K+ ++EG  +FFK      LR +       V ++
Sbjct: 245 ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYD 290



 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 29/230 (12%)

Query: 182 WVPTLIGYSIQGYAKFGFYEVFKVKFASLVSEESAYKYRTSIYLVSAATAEFIGDVGLSA 241
            +  +I Y       F F + +K  F   V     +    +  L S   A       +  
Sbjct: 72  NLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYP 131

Query: 242 FEAIKVKIQTSPGFAN------TMMEAIPKMYQEEGLYSFFKALVPLALRQIPYTTVKFV 295
            +  + ++    G          +   I K+++ +GL   ++         I Y    F 
Sbjct: 132 LDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFG 191

Query: 296 CFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFCAVASHPPDVIVSQMNQQKD 355
            ++    +L                  +V++           + S+P D +  +M  Q  
Sbjct: 192 VYDTAKGMLPDPKNVHI----------IVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG 241

Query: 356 VP------------MATIIRRLGFSGMWSGLAPRIAMIGTIAALQWFIFD 393
                            I +  G    + G    + + G   A    ++D
Sbjct: 242 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV-LRGMGGAFVLVLYD 290



 Score = 34.3 bits (77), Expect = 0.019
 Identities = 22/183 (12%), Positives = 60/183 (32%), Gaps = 16/183 (8%)

Query: 225 LVSAATAEFIGDVGLSAFEAIKVKIQT--------SPGFANTMMEAIPKMYQEEGLYSFF 276
            ++   A  I    ++  E +K+ +Q         +      +++ + ++ +E+G  SF+
Sbjct: 10  FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFW 69

Query: 277 KALVPLALRQIPYTTVKFVCFERTIELLYKYVVPKPRDQCSKPEQLVVTFSAGYIAGIFC 336
           +  +   +R  P   + F   ++      +  +                 ++G  AG   
Sbjct: 70  RGNLANVIRYFPTQALNFAFKDK----YKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 125

Query: 337 AVASHPPDVIVSQMNQQKDVPMATIIRRLGFSGMWSGLAPRIAMIGTIAALQWFIFDGFK 396
               +P D   +++             +  F+G+ + +       G     Q F      
Sbjct: 126 LCFVYPLDFARTRLAADVGKGA----AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQG 181

Query: 397 VAM 399
           + +
Sbjct: 182 III 184



 Score = 32.8 bits (73), Expect = 0.057
 Identities = 17/135 (12%), Positives = 35/135 (25%), Gaps = 26/135 (19%)

Query: 2   FRTLFNTHWASCQSQVPSSNEEYSCAFASNKYFALCGVGGLLA--------CGSTHLLVT 53
            R L+     S Q  +      +     +           ++              L+  
Sbjct: 168 LRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSY 227

Query: 54  PLDIVKCRLQVD------QEKYRNVMTGFRVTVAEEGLRFRVTVAEEGLRGLAKGWVPTL 107
           P D V+ R+ +          Y   +  +R    +EG +              KG    +
Sbjct: 228 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPK-----------AFFKGAWSNV 276

Query: 108 IGYSIQGYAKFGFYE 122
           +   + G      Y+
Sbjct: 277 L-RGMGGAFVLVLYD 290



 Score = 27.0 bits (58), Expect = 4.6
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 2/52 (3%)

Query: 323 VVTFSAGYIAGIFCAVASHPPDVIVSQMNQQKDVPMATIIRRLGFSGMWSGL 374
           +  F AG +A      A  P + +   +  Q       I     + G+   +
Sbjct: 7   LKDFLAGGVAAAISKTAVAPIERVKLLL--QVQHASKQISAEKQYKGIIDCV 56


>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 103

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 156 SSGSSSTTLSSSNSTFGCNLVGLAKGWVPTLIGYSIQGYA 195
           SSGSS   +    + +G  L G      P +I     G  
Sbjct: 2   SSGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSK 41


>d1ulva3 b.1.9.3 (A:776-1020) Glucodextranase, domain C
          {Arthrobacter globiformis [TaxId: 1665]}
          Length = 245

 Score = 26.5 bits (58), Expect = 5.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 73 MTGFRVTVAEEGLRFRVTVAEEG 95
          +TG  V  A +   F  T+A E 
Sbjct: 33 LTGVDVYDAGDDYAFVATIAGEV 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,542,732
Number of extensions: 71840
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 8
Length of query: 419
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,199,356
Effective search space: 396986836
Effective search space used: 396986836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)