BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17757
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 51/74 (68%)
Query: 20 DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++ EGVLEEA F+ I SL+ + + I
Sbjct: 51 DKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI 110
Query: 80 MSRERSRDMMPLSR 93
R+ +P+
Sbjct: 111 RERDSKTSQVPVKH 124
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 47/63 (74%)
Query: 20 DVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79
D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++ EGVLEEA F+ I SL+ + + I
Sbjct: 45 DKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI 104
Query: 80 MSR 82
R
Sbjct: 105 RER 107
>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide
Repeat Proteins From Nostoc Punctiforme
Length = 201
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 111 FQGVNLAGSDLSRLDLRN--INFKVRKGLTLPAC---SVNLKGANLEGSNMAGVNLRVAT 165
G +L G++LS+ DL + ++ + +G L NLK ANLE + ++ N+R A
Sbjct: 82 LNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREAD 141
Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L ANL+ DL A LA ADL +L + L ANL GANL+DA LE
Sbjct: 142 LSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLE 188
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
V+L+GA LE N++G L A L ANLQ +L A L+GA L DL G++L +A+L
Sbjct: 40 VDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSD 99
Query: 204 ANLKDAALE 212
A L +A LE
Sbjct: 100 AILDNAILE 108
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 30/158 (18%)
Query: 80 MSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTL 139
M E+ R + RD + + + G L G+ L +L+ N R L+
Sbjct: 21 MDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLS-RADLS- 78
Query: 140 PACSVNLKGANLEGSNMAG-------------------------VNLRVATLKNANLQNC 174
L GA+L G+N++ NL+ A L+ A L +
Sbjct: 79 ---GATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHA 135
Query: 175 DLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
++R A L+ A+LE DLSG+DL A+L ANL AALE
Sbjct: 136 NIREADLSEANLEAADLSGADLAIADLHQANLHQAALE 173
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 98 NALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMA 157
NA++ I E NL ++L + L + N + +L ANLE ++++
Sbjct: 104 NAILEGAILDEAVLNQANLKAANLEQAILSHANIR----------EADLSEANLEAADLS 153
Query: 158 GVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEAN 200
G +L +A L ANL L A L GA+LE+ +L G+ L N
Sbjct: 154 GADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEGGN 196
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKV----RKGLTLPACSVNLKGANLEGSNMAGVNLR 162
+E + +L+G+DL+ DL N R LT NL+ ANLEG+ + G N
Sbjct: 143 SEANLEAADLSGADLAIADLHQANLHQAALERANLT----GANLEDANLEGTILEGGNNN 198
Query: 163 VAT 165
+AT
Sbjct: 199 LAT 201
>pdb|2BM4|A Chain A, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM4|B Chain B, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|A Chain A, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|B Chain B, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM6|A Chain A, The Structure Of Mfpa (Rv3361c, C2221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|A Chain A, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|B Chain B, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|C Chain C, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix
Length = 186
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGL---TLPACS------------------VN 145
+E F GVNLA S RN F+ R L T CS V+
Sbjct: 33 SECDFSGVNLAESQHRGSAFRNCTFE-RTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVD 91
Query: 146 LKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGAN 205
A L G+++ G+NL L+ +L + DLR VL GADL +G+ L +A+LRGA
Sbjct: 92 FTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGAT 151
Query: 206 L 206
+
Sbjct: 152 V 152
>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
pdb|2J8I|B Chain B, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
Length = 118
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
V+L+GA LE N++G L A L ANLQ +L A L+GA L DL G++L +A+L
Sbjct: 40 VDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSD 99
Query: 204 ANLKDAALE 212
A L +A LE
Sbjct: 100 AILDNAILE 108
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%)
Query: 143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLR 202
++NL GA L G+ + NL+ A L A+L L A L GA+L DLS + L A L
Sbjct: 49 NINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILE 108
Query: 203 GANLKDAAL 211
GA L +A L
Sbjct: 109 GAILDEAVL 117
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 160 NLRVATLKNANLQNCDLRAAVLAG----------ADLENCDLSGSDLHEANLRGANLKDA 209
+ + L+ A L+N +L A+L G A+L DLSG+ L+ A+LRGANL A
Sbjct: 36 DFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKA 95
Query: 210 AL 211
L
Sbjct: 96 DL 97
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 120 DLSRLDLR-----NINFK--VRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQ 172
D S +DLR NIN + G L NL+ ANL ++++G L A L+ ANL
Sbjct: 36 DFSIVDLRGAVLENINLSGAILHGAMLD--EANLQQANLSRADLSGATLNGADLRGANLS 93
Query: 173 NCDLRAAVLAGADLENCDLSGSDLHEANL 201
DL A+ L+N L G+ L EA L
Sbjct: 94 KADLSDAI-----LDNAILEGAILDEAVL 117
>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A
Pentapeptide Repeat Protein Involved In Heterocyst
Differentiation Regulation From The Cyanobacterium
Nostoc Sp. Strain Pcc 7120
Length = 257
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL 166
+E G++L+ +DL R LR + K + NL A+L G+N+ NL L
Sbjct: 83 SEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLL 142
Query: 167 KNANL-----QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
A+L Q DL +L GADL DL + LH ANL GA L
Sbjct: 143 FQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKL 187
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 114 VNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQN 173
V L G+DLS DLR + C N G ++ N+A +L A+L+ A+L
Sbjct: 160 VLLTGADLSYADLRAASLHHANLDGAKLCRANF-GRTIQWGNLA-ADLSGASLQGADLSY 217
Query: 174 CDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+L +A+L A+L+ DL+G+ L +A L+GA + D ++
Sbjct: 218 ANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIH 256
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 18/228 (7%)
Query: 4 KMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEA 63
+ +A G +N +++ T A L +Y + L R G+ E L EA
Sbjct: 28 RHYAAGKRNFQHINLQEIELTNASLTGADLSYAD--LRQTRLGKSNFSHTCLREADLSEA 85
Query: 64 RFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSR 123
+GI+ L I+ RE L + + A ++ NL+ L +
Sbjct: 86 ILWGIDLSEADLYRAIL-READLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQ 144
Query: 124 LDLR-NINFKVRKGLTLPACS----VNLKGANLEGSNMAGVNLRVA----TLKNANLQNC 174
DLR + N + G L + +L+ A+L +N+ G L A T++ NL
Sbjct: 145 ADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLA-A 203
Query: 175 DLRAAVLAGADLENCDLSGSDLHEANLRGAN-----LKDAALELMLTP 217
DL A L GADL +L + L +ANL+GA+ LKDA L+ + P
Sbjct: 204 DLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMP 251
>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23)
From The Cyanobacterium Cyanothece 51142
Length = 150
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 131 FKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCD 190
F K + NL ANL S+++ + L A L NL DL A+L GA+L+ +
Sbjct: 48 FGXDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGAN 107
Query: 191 LSGSDLHEANLRGANLKDAALELMLTPLHMSQT 223
L ++L ANL ANL+ A +LT +++ +T
Sbjct: 108 LENANLQGANLENANLRGA----ILTGVNLEET 136
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
NL SDLS + L N V L+ +L+ A L G+N+ G NL A L+ AN
Sbjct: 63 LSNANLYQSDLSSIILENA-ILVETNLS----ETDLENAILIGANLQGANLENANLQGAN 117
Query: 171 LQNCDLRAAVLAGADLENCDLSG 193
L+N +LR A+L G +LE L G
Sbjct: 118 LENANLRGAILTGVNLEETHLKG 140
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 120 DLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAA 179
DL+R +L N N + L+ S+ L+ A L +N++ +L A L ANLQ +L A
Sbjct: 57 DLTRANLSNANL-YQSDLS----SIILENAILVETNLSETDLENAILIGANLQGANLENA 111
Query: 180 VLAGADLENCDLSGSDLHEANLRGANLK 207
L GA+LEN +L G+ L NL +LK
Sbjct: 112 NLQGANLENANLRGAILTGVNLEETHLK 139
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
+N G +L G ++ G+NL A L + DLR + L+ A LENC S L+E N
Sbjct: 32 LNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCY 91
Query: 204 ANLKDAALELMLTPLHMSQT 223
ANL + + + + S +
Sbjct: 92 ANLSNCIIRALFENSNFSNS 111
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 106 TAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165
T E + +N +G DLS L L +N SVN GA L+ ++ LR++
Sbjct: 24 TGEESAEELNYSGCDLSGLSLVGLNLS----------SVNFSGAVLDDTD-----LRMSD 68
Query: 166 LKNANLQNCDLRAAVL-----AGADLENCDLSGSDLHEANLRGANLKDAALE 212
L A L+NC + ++L A+L NC + +N +NLK+A+ +
Sbjct: 69 LSQAVLENCSFKNSILNECNFCYANLSNCIIRAL-FENSNFSNSNLKNASFK 119
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
+N G +L G ++ G+NL A L + DLR + L+ A LENC S L+E N
Sbjct: 35 LNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCY 94
Query: 204 ANLKDAALELMLTPLHMSQT 223
ANL + + + + S +
Sbjct: 95 ANLSNCIIRALFENSNFSNS 114
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 106 TAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165
T E + +N +G DLS L L +N SVN GA L+ ++ LR++
Sbjct: 27 TGEESAEELNYSGCDLSGLSLVGLNLS----------SVNFSGAVLDDTD-----LRMSD 71
Query: 166 LKNANLQNCDLRAAVL-----AGADLENCDLSGSDLHEANLRGANLKDAALE 212
L A L+NC + ++L A+L NC + +N +NLK+A+ +
Sbjct: 72 LSQAVLENCSFKNSILNECNFCYANLSNCIIRAL-FENSNFSNSNLKNASFK 122
>pdb|3PSZ|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
pdb|3PSZ|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
Length = 216
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 99 ALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAG 158
A IT + F +L G++ S NF+ G L C L G +G+N+ G
Sbjct: 101 ASFANQITVKSYFXEAHLTGNNFSY-----ANFE---GCLLEQCE--LSGNRWQGANLFG 150
Query: 159 VNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPL 218
+L + L + D + L G DL CDL G DL NL G + + + +L +
Sbjct: 151 ASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQI 210
Query: 219 HM 220
+
Sbjct: 211 GL 212
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 121 LSRLDLRNINFKVRKGLTLPACS-VNLKGANLEGSNMAGVNLRVATLKN----------A 169
L DLR +F +R LT+ CS G L G+N A+ N A
Sbjct: 58 LQGCDLREASF-LRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVKSYFXEA 116
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
+L + A G LE C+LSG+ ANL GA+L + L
Sbjct: 117 HLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDL 158
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 145 NLKGANLEGSNMAGVNLRVATLKNANLQNCDL------RAAVLAGADLEN-----CDLSG 193
+L+G +G G N L +C ++ +L G DL CDL+
Sbjct: 16 DLEGEQFQGCRFIGCNFSWLDLAEXRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTM 75
Query: 194 SDLHEANLRGANLKDA 209
+D + G L+D
Sbjct: 76 ADCSRSQCLGLELRDC 91
>pdb|3PSS|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
pdb|3PSS|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
Length = 216
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 128 NINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLE 187
N ++ +G L C L G +G+N+ G +L + L + D + L G DL
Sbjct: 122 NFSYANFEGCLLEQCE--LSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLR 179
Query: 188 NCDLSGSDLHEANLRGANLKDAALELMLTPLHM 220
CDL G DL NL G + + + +L + +
Sbjct: 180 QCDLPGLDLRRVNLDGVQINEDQQQALLEQIGL 212
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 15/167 (8%)
Query: 60 LEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGS 119
LE +F G + + ++ R D R + L+ E F +L +
Sbjct: 17 LEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMA 76
Query: 120 DLSR-----LDLRN-----INFK---VRKGLTLPA--CSVNLKGANLEGSNMAGVNLRVA 164
D SR L+LR+ INF +T+ + C +L G N +N G L
Sbjct: 77 DCSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQC 136
Query: 165 TLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
L Q +L A LAG+DL + D NL+G +L+ L
Sbjct: 137 ELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDL 183
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
R+QG NL G+ L+ DL F + SVNL+G +L ++ G++LR L
Sbjct: 142 RWQGANLFGASLAGSDLSGSEFG-----QIDWASVNLQGCDLRQCDLPGLDLRRVNLDGV 196
Query: 170 NL 171
+
Sbjct: 197 QI 198
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 145 NLKGANLEGSNMAGVNLRVATLKNANLQNCDL------RAAVLAGADLEN-----CDLSG 193
+L+G +G G N L +C ++ +L G DL CDL+
Sbjct: 16 DLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTM 75
Query: 194 SDLHEANLRGANLKDA 209
+D + G L+D
Sbjct: 76 ADCSRSQCLGLELRDC 91
>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of
At2g44920, A Pentapeptide Repeat Protein From
Arabidopsis Thaliana Thylakoid Lumen
Length = 152
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 147 KGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
+G +L G + +G L K + L+ + + A L GA + DL+G+DL EA+LRGA+
Sbjct: 14 RGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADF 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F G L D LR NFK K L +L GA+L +++ G + +A + N
Sbjct: 23 FSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVN 82
Query: 171 LQNCDLRAAVLAG-ADLENCDLSGSDLHEANLR 202
L N +L A + G + +++G+D + LR
Sbjct: 83 LTNANLEGATMMGNTSFKGSNITGADFTDVPLR 115
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 145 NLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLS-----GSDLHEA 199
+L G + G + + + + L+ AN + L A ADL DLS G+D A
Sbjct: 17 DLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLA 76
Query: 200 NLRGANLKDAALE 212
N+ NL +A LE
Sbjct: 77 NVTKVNLTNANLE 89
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 112 QGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANL 171
+G +L+G D S L +FK S+ L+ AN +G+ + G A+ +A+L
Sbjct: 14 RGQDLSGKDFSGQTLIRQDFKT---------SI-LRQANFKGAKLLG-----ASFFDADL 58
Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
DL A L GAD +++ +L ANL GA +
Sbjct: 59 TGADLSEADLRGADFSLANVTKVNLTNANLEGATM 93
>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein
From Cyanothece Sp 51142 At 2.3 Angstrom Resolution.
Tetragonal Crystal Form
Length = 184
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL-----HE 198
V L G + G ++ A L ++N DLR AV G+ L DL G+DL +
Sbjct: 57 VKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYL 116
Query: 199 ANLRGANLKDAAL 211
+ +GA+L +A L
Sbjct: 117 TSFKGADLTNAVL 129
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 148 GANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLK 207
G + + MA V A+ ++ L D L A N DL+ S+ EA+LRGA
Sbjct: 36 GTDDDDKAMAMVTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFN 95
Query: 208 DAAL 211
+AL
Sbjct: 96 GSAL 99
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 9 GSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGI 68
SE +F +P T Y DR P F ILN+ R G+L + EE FFG
Sbjct: 28 SSERDFFYHP----ETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFG- 82
Query: 69 ESLVPQLM 76
L+P+++
Sbjct: 83 --LIPEII 88
>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein
(Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1
Angstrom Resolution
Length = 184
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 144 VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL-----HE 198
V L G + G ++ A L ++N DLR AV G+ L DL G+DL +
Sbjct: 57 VKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYL 116
Query: 199 ANLRGANLKDAAL 211
+ +GA+L +A L
Sbjct: 117 TSFKGADLTNAVL 129
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 164 ATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
A+ ++ L D L A N DL+ S+ EA+LRGA +AL
Sbjct: 52 ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSAL 99
>pdb|2XT2|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT2|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 200
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 99 ALILTPITA--ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNM 156
+LI P T+ E+RF + G + + ++ K+ L+ C +N + G +
Sbjct: 62 SLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSV--KMEGALSFERCILN--DSLFYGLYL 117
Query: 157 AGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
AGV + + +AN D AD DL GS H L GA+ DA
Sbjct: 118 AGVKMVECRIHDANFTEADCE-----DADFTQSDLKGSTFHNTKLTGASFIDA 165
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily)
Voltage-gated Potassium Channel
Length = 115
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 27 YLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIES 70
Y DR P F I+NY R+G+L ++ EE F+G++S
Sbjct: 48 YFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDS 91
>pdb|2XTW|A Chain A, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|B Chain B, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|C Chain C, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|D Chain D, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
Length = 217
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 95 DVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGS 154
D A + IT F + ++LS + + + + + GA GS
Sbjct: 98 DFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGS 157
Query: 155 NMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL--HEANL 201
+++G + AN +CDL + L D+ DL G L ++A+L
Sbjct: 158 DLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASL 206
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 144 VNLKGANLEGS-----------NMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLS 192
+ GA+L G+ + G N A LK+A ++CDL AD N
Sbjct: 31 CDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSM-----ADFRNSSAL 85
Query: 193 GSDLHEANLRGANLKDAALELMLTP 217
G ++ +GA+ + A+ M+T
Sbjct: 86 GIEIRHCRAQGADFRGASFMNMITT 110
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 25/148 (16%)
Query: 90 PLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGA 149
LS D N+ L R QG + G+ + F CS +
Sbjct: 73 DLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWF----------CSAYITNT 122
Query: 150 NLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLE---------------NCDLSGS 194
NL +N + V L L + A +G+DL +CDL+ S
Sbjct: 123 NLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNS 182
Query: 195 DLHEANLRGANLKDAALELMLTPLHMSQ 222
+L + ++RG +L+ L+ L M +
Sbjct: 183 ELGDLDIRGVDLQGVKLDNYQASLLMER 210
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F + +G+DLS + F R+ + +G N + L+ A K+ +
Sbjct: 28 FFNCDFSGADLSGTEFIGCQFYDRE--------------SQKGCNFSRAMLKDAIFKSCD 73
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANL 201
L D R + G ++ +C G+D A+
Sbjct: 74 LSMADFRNSSALGIEIRHCRAQGADFRGASF 104
>pdb|2XTX|A Chain A, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTX|B Chain B, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 148 GANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL--HEANL 201
GA GS+++G + AN +CDL + L D+ DL G L ++A+L
Sbjct: 151 GATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASL 206
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 144 VNLKGANLEGS-----------NMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLS 192
+ GA+L G+ + G N A LK+A ++CDL AD N
Sbjct: 31 CDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSM-----ADFRNSSAL 85
Query: 193 GSDLHEANLRGANLKDAALELMLTP 217
G ++ +GA+ + A+ M+T
Sbjct: 86 GIEIRHCRAQGADFRGASFRNMITT 110
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 15/113 (13%)
Query: 125 DLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGA 184
D R +F+ CS + NL +N + V L L + A +G+
Sbjct: 98 DFRGASFRNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGS 157
Query: 185 DLE---------------NCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQ 222
DL +CDL+ S+L + ++RG +L+ L+ L M +
Sbjct: 158 DLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMER 210
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F + +G+DLS + F R+ + +G N + L+ A K+ +
Sbjct: 28 FFNCDFSGADLSGTEFIGCQFYDRE--------------SQKGCNFSRAMLKDAIFKSCD 73
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLR 202
L D R + G ++ +C G+D A+ R
Sbjct: 74 LSMADFRNSSALGIEIRHCRAQGADFRGASFR 105
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 153 GSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
G+ + G + L D RAA DL N +L D+ +L+G L +
Sbjct: 146 GAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQAS 205
Query: 213 LMLTPLHMS 221
L++ L ++
Sbjct: 206 LLMERLGIA 214
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 8/118 (6%)
Query: 76 MEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRK 135
+EI R + D S R++I NL+ ++ S++ L +
Sbjct: 87 IEIRHCRAQGADFRGASFRNMITT---RTWFCSAYITNTNLSYANFSKVVLEKCELWENR 143
Query: 136 GLTLPACSVNLKGANLEGSNMAGVNLRVAT-----LKNANLQNCDLRAAVLAGADLEN 188
+ G++L G + + R A L N+ L + D+R L G L+N
Sbjct: 144 WIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDN 201
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 9 GSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGI 68
+E +F N + T Y DR P F +LN+ R G+L +E F+GI
Sbjct: 41 STEKEFFFN----EDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGI 96
Query: 69 ESLVPQLM 76
+P+++
Sbjct: 97 ---LPEII 101
>pdb|2XTY|A Chain A, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTY|B Chain B, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 95 DVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGS 154
D A + IT F + ++LS + + + + + GA GS
Sbjct: 98 DFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGS 157
Query: 155 NMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL--HEANL 201
+++G + AN +CDL + L D+ DL G L ++A+L
Sbjct: 158 DLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASL 206
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 144 VNLKGANLEGS-----------NMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLS 192
+ GA+L G+ + G N A LK+A ++CDL AD N
Sbjct: 31 CDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSM-----ADFRNSSAL 85
Query: 193 GSDLHEANLRGANLKDAALELMLTP 217
G ++ +GA+ + A+ M+T
Sbjct: 86 GIEIRHCRAQGADFRGASFMNMITT 110
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 25/148 (16%)
Query: 90 PLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGA 149
LS D N+ L R QG + G+ + F CS +
Sbjct: 73 DLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWF----------CSAYITNT 122
Query: 150 NLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLE---------------NCDLSGS 194
NL +N + V L L + A +G+DL +CDL+ S
Sbjct: 123 NLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNS 182
Query: 195 DLHEANLRGANLKDAALELMLTPLHMSQ 222
+L + ++RG +L+ L+ L M +
Sbjct: 183 ELGDLDIRGVDLQGVKLDNYQASLLMER 210
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F + +G+DLS + F R+ + +G N + L+ A K+ +
Sbjct: 28 FFNCDFSGADLSGTEFIGCQFYDRE--------------SQKGCNFSRAMLKDAIFKSCD 73
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANL 201
L D R + G ++ +C G+D A+
Sbjct: 74 LSMADFRNSSALGIEIRHCRAQGADFRGASF 104
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 9 GSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGI 68
+E +F N + T Y DR P F +LN+ R G+L +E F+GI
Sbjct: 63 STEKEFFFN----EDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGI 118
>pdb|2XT4|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT4|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 194
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 21/115 (18%)
Query: 99 ALILTPITA--ELRFQGVNLAGSDLSRLDLRNINFKVRKG--LTLPACSVNLKGANLEGS 154
+LI P T+ E+RF + G +N+ + L+ C +N + G
Sbjct: 62 SLISIPQTSFMEVRFVDCKMLG----------VNWTSAQAGALSFERCILN--DSLFYGL 109
Query: 155 NMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
+AGV + + +AN D AD DL GS H L GA+ DA
Sbjct: 110 YLAGVKMVECRIHDANFTEADCE-----DADFTQSDLKGSTFHNTKLTGASFIDA 159
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPAC-SVNLKGANLEGSNMAGVNLRVATL 166
+ F+ N ++L+R R F V L+L + + M GVN A
Sbjct: 33 DCTFRQCNFTEAELNRCKFRECEF-VDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQA 91
Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
+ + C L ++ G L + +H+AN A+ +DA
Sbjct: 92 GALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDA 134
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 10 SEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGI 68
+E +F N + T Y DR P F +LN+ R G+L +E F+GI
Sbjct: 70 TEKEFFFN----EDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGI 124
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 31.2 bits (69), Expect = 0.44, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 25 GAYLIDRSPTYFEPILNYL------RNGQ-LVLDPNINPEGV-LEEARFFGIESLVPQ-L 75
GAY++D Y +P+L Y+ R G V+D +INP + + R L P+
Sbjct: 510 GAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRASVLEPEGT 569
Query: 76 MEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNI--NFKV 133
+EI + + +D++ RR L PI+ +L Q L S+LS D + + K
Sbjct: 570 VEI---KYQKKDLVKTIRR-------LDPISKKLVEQ---LGVSELSDTDRKELEGQLKA 616
Query: 134 RKGLTLP 140
R+ L LP
Sbjct: 617 REDLLLP 623
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
Length = 762
Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 28/129 (21%)
Query: 25 GAYLIDRSPTYFEPILNY------LRNGQ-LVLDPNINP---EGVLEEARFFGIESLVPQ 74
GAY++D Y +PIL Y LR G +V+D INP E ++ G+ L P+
Sbjct: 486 GAYIVDGLRQYKQPILIYIPPYAELRGGSWVVIDATINPLCIEMYADKESRGGV--LEPE 543
Query: 75 -LMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNIN--F 131
+EI + R +D++ RR + P +L Q L DLS D +++
Sbjct: 544 GTVEI---KFRKKDLIKSMRR-------IDPAYKKLMEQ---LGEPDLSDKDRKDLEGRL 590
Query: 132 KVRKGLTLP 140
K R+ L LP
Sbjct: 591 KAREDLLLP 599
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
Length = 760
Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 28/129 (21%)
Query: 25 GAYLIDRSPTYFEPILNY------LRNGQ-LVLDPNINP---EGVLEEARFFGIESLVPQ 74
GAY++D Y +PIL Y LR G +V+D INP E ++ G+ L P+
Sbjct: 484 GAYIVDGLRQYKQPILIYIPPYAELRGGSWVVIDATINPLCIEMYADKESRGGV--LEPE 541
Query: 75 -LMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNIN--F 131
+EI + R +D++ RR + P +L Q L DLS D +++
Sbjct: 542 GTVEI---KFRKKDLIKSMRR-------IDPAYKKLMEQ---LGEPDLSDKDRKDLEGRL 588
Query: 132 KVRKGLTLP 140
K R+ L LP
Sbjct: 589 KAREDLLLP 597
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 78 IIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGL 137
+++ R D + L +++ + +L TP + AGS L LR++ F G
Sbjct: 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF---AGA 282
Query: 138 TLPACSVNLKGANLEGSNMAG 158
T+P + +L G + G
Sbjct: 283 TMPDAVLETVHQHLPGEKVNG 303
>pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
Length = 737
Score = 26.9 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 19/88 (21%)
Query: 9 GSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNY------LRNGQ-LVLDPNINPE---- 57
G GG +V G++++D Y +PI+ Y LR G +V+DP IN +
Sbjct: 474 GFSGGQRDXFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQXEX 533
Query: 58 --------GVLEEARFFGIESLVPQLME 77
GVLE GI+ +L++
Sbjct: 534 YADVNARAGVLEPQGXVGIKFRREKLLD 561
>pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYR|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYT|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 737
Score = 26.9 bits (58), Expect = 9.3, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 9 GSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNY------LRNGQ-LVLDPNINPE---- 57
G GG +V G++++D Y +PI+ Y LR G +V+DP IN +
Sbjct: 474 GFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEM 533
Query: 58 --------GVLEEARFFGIESLVPQLMEII 79
GVLE GI+ +L++ +
Sbjct: 534 YADVNARAGVLEPQGMVGIKFRREKLLDTM 563
>pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD2|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 805
Score = 26.9 bits (58), Expect = 9.3, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 19/88 (21%)
Query: 9 GSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNY------LRNGQ-LVLDPNINPE---- 57
G GG +V G++++D Y +PI+ Y LR G +V+DP IN +
Sbjct: 527 GFSGGQRDXFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQXEX 586
Query: 58 --------GVLEEARFFGIESLVPQLME 77
GVLE GI+ +L++
Sbjct: 587 YADVNARAGVLEPQGXVGIKFRREKLLD 614
>pdb|1W2X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|3K8X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
Length = 758
Score = 26.9 bits (58), Expect = 9.5, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 9 GSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNY------LRNGQ-LVLDPNINPE---- 57
G GG +V G++++D Y +PI+ Y LR G +V+DP IN +
Sbjct: 480 GFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEM 539
Query: 58 --------GVLEEARFFGIESLVPQLMEII 79
GVLE GI+ +L++ +
Sbjct: 540 YADVNARAGVLEPQGMVGIKFRREKLLDTM 569
>pdb|3H0J|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0S|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0Q|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
Length = 769
Score = 26.9 bits (58), Expect = 9.5, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 9 GSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNY------LRNGQ-LVLDPNINPE---- 57
G GG +V G++++D Y +PI+ Y LR G +V+DP IN +
Sbjct: 483 GFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEM 542
Query: 58 --------GVLEEARFFGIESLVPQLMEII 79
GVLE GI+ +L++ +
Sbjct: 543 YADVNARAGVLEPQGMVGIKFRREKLLDTM 572
>pdb|3PGQ|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
Length = 764
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 9 GSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNY------LRNGQ-LVLDPNINPE---- 57
G GG +V G++++D Y +PI+ Y LR G +V+DP IN +
Sbjct: 480 GFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEM 539
Query: 58 --------GVLEEARFFGIESLVPQLMEII 79
GVLE GI+ +L++ +
Sbjct: 540 YADVNARAGVLEPQGMVGIKFRREKLLDTM 569
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,207,155
Number of Sequences: 62578
Number of extensions: 254115
Number of successful extensions: 748
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 126
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)