Query psy17757
Match_columns 225
No_of_seqs 216 out of 1615
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 22:05:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1665|consensus 100.0 1.3E-42 2.8E-47 265.3 8.6 219 1-225 35-302 (302)
2 PRK15196 secreted effector pro 99.9 4.3E-23 9.3E-28 173.6 5.1 128 87-214 195-332 (350)
3 PRK15196 secreted effector pro 99.9 3E-23 6.6E-28 174.5 3.5 14 32-45 120-133 (350)
4 PRK09718 hypothetical protein; 99.8 4.7E-21 1E-25 162.9 5.0 94 121-214 142-238 (512)
5 PRK15197 secreted effector pro 99.8 4.4E-20 9.6E-25 150.6 5.1 70 143-212 203-273 (291)
6 PRK15197 secreted effector pro 99.8 6E-20 1.3E-24 149.8 5.2 116 89-214 154-270 (291)
7 PRK09718 hypothetical protein; 99.8 3.5E-20 7.6E-25 157.6 2.2 70 143-212 154-226 (512)
8 COG1357 Pentapeptide repeats c 99.7 1E-17 2.2E-22 135.0 7.6 53 86-138 82-137 (238)
9 PRK15377 E3 ubiquitin-protein 99.7 1.4E-17 3.1E-22 148.6 5.7 99 86-184 177-276 (782)
10 KOG1665|consensus 99.7 5.4E-18 1.2E-22 130.4 2.5 73 140-213 227-299 (302)
11 PRK15377 E3 ubiquitin-protein 99.7 1.6E-17 3.5E-22 148.3 1.7 81 90-170 191-272 (782)
12 KOG2715|consensus 99.6 3.7E-16 8E-21 115.0 5.7 80 2-87 47-126 (210)
13 PF13599 Pentapeptide_4: Penta 99.4 2.5E-13 5.5E-18 90.5 3.4 31 171-201 39-69 (78)
14 KOG2716|consensus 99.2 1.9E-11 4.1E-16 96.4 4.4 74 1-81 29-103 (230)
15 PF02214 BTB_2: BTB/POZ domain 99.1 1.3E-11 2.7E-16 85.4 0.9 65 1-71 24-89 (94)
16 KOG2714|consensus 98.9 1.4E-09 2.9E-14 91.7 5.0 66 2-75 38-104 (465)
17 KOG2723|consensus 98.8 4.4E-09 9.6E-14 82.5 4.4 72 1-79 34-106 (221)
18 KOG4390|consensus 97.4 5.5E-05 1.2E-09 63.7 1.6 47 22-68 77-123 (632)
19 KOG3713|consensus 97.4 0.00013 2.8E-09 63.3 3.4 49 23-71 79-127 (477)
20 smart00225 BTB Broad-Complex, 95.8 0.0033 7.2E-08 41.6 0.6 63 2-73 25-87 (90)
21 KOG3840|consensus 91.2 0.15 3.2E-06 42.2 2.2 62 1-68 121-184 (438)
22 PHA02790 Kelch-like protein; P 85.6 0.87 1.9E-05 40.7 3.5 68 2-79 47-116 (480)
23 PHA03098 kelch-like protein; P 83.7 0.7 1.5E-05 41.7 2.1 65 2-79 37-101 (534)
24 PF00651 BTB: BTB/POZ domain; 73.2 2.5 5.3E-05 29.1 1.8 51 29-79 57-107 (111)
25 KOG1545|consensus 71.7 0.75 1.6E-05 39.1 -1.3 48 22-69 99-147 (507)
26 KOG4441|consensus 60.5 6.7 0.00014 36.0 2.4 69 2-79 62-130 (571)
27 PHA02713 hypothetical protein; 59.1 7.7 0.00017 35.5 2.5 67 2-79 52-119 (557)
28 PF01696 Adeno_E1B_55K: Adenov 58.4 8 0.00017 33.5 2.3 9 143-151 167-175 (386)
29 PF01696 Adeno_E1B_55K: Adenov 35.7 14 0.00031 32.0 0.4 11 124-134 168-178 (386)
30 COG4256 HemP Hemin uptake prot 25.1 13 0.00029 22.9 -1.1 28 22-51 35-62 (63)
31 PF08251 Mastoparan_2: Mastopa 20.9 12 0.00026 15.8 -1.3 10 40-49 1-10 (14)
No 1
>KOG1665|consensus
Probab=100.00 E-value=1.3e-42 Score=265.29 Aligned_cols=219 Identities=52% Similarity=0.722 Sum_probs=165.0
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHH---
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLME--- 77 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~--- 77 (225)
||+.||++. ++++++++.|.|||||+|.||++||||||.|+++..+.+..-++|+||+||++-.+...+++
T Consensus 35 MLa~MF~~~------g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~~~~ 108 (302)
T KOG1665|consen 35 MLAAMFSGR------GAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLEDSRK 108 (302)
T ss_pred HHHHHHccC------CCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhhhcc
Confidence 899999999 58999999999999999999999999999999999888889999999999998766665543
Q ss_pred ----------------HHHhhcccCCCCCcchhhhhhhhhcc-----CCCCCceeecccccCCcccccccccceeeecc-
Q psy17757 78 ----------------IIMSRERSRDMMPLSRRDVINALILT-----PITAELRFQGVNLAGSDLSRLDLRNINFKVRK- 135 (225)
Q Consensus 78 ----------------~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~- 135 (225)
.++-++..+.+++|+++|++..+|+. +.+..|.|.+++|.-|.|+++++.++.|+.+.
T Consensus 109 e~pe~~~pltR~diik~iqT~elRfqGvNlSGaDLskLDlr~inFkyA~ls~c~lshtNL~ca~lerADl~gsil~cA~L 188 (302)
T KOG1665|consen 109 EVPEVEAPLTRIDIIKCIQTEELRFQGVNLSGADLSKLDLRLINFKYANLSNCNLSHTNLQCAKLERADLEGSILHCAIL 188 (302)
T ss_pred CCCcCCCCccHHHHHHHhhhhheeeecccccccchhhcccccccceehhhccccccccchhhhhhcccccccchhhhhhh
Confidence 23233334444444444444443333 33333333333333333333333333333321
Q ss_pred -----------ccc-------------cccccceecCccccCCcccCccccccccCceeecccccccccccCcccCcccc
Q psy17757 136 -----------GLT-------------LPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDL 191 (225)
Q Consensus 136 -----------~~~-------------~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f 191 (225)
++. .+..++++++|+|.++++.+++++.|+|+++++++|++.+|.+.++++++|+|
T Consensus 189 ~~v~~lcaN~eGA~L~gcNfedps~~kaNLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnl 268 (302)
T KOG1665|consen 189 REVEMLCANAEGASLKGCNFEDPSGLKANLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNL 268 (302)
T ss_pred hhhhheecccccccccCcCCCCccchhccccccccccccccccccccceeEeccccccccccCccccccccCCccccCCC
Confidence 111 22226777777777788888888888999999999999999999999999999
Q ss_pred cCCCcCCccccCCcccccccccccccccccccCC
Q psy17757 192 SGSDLHEANLRGANLKDAALELMLTPLHMSQTVR 225 (225)
Q Consensus 192 ~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 225 (225)
+||++.+|++++++++++.++..++|+|+++.||
T Consensus 269 sG~dLQeAnLRg~Nlk~A~~e~mltplhMsqaiR 302 (302)
T KOG1665|consen 269 SGADLQEANLRGVNLKEAHMEAMLTPLHMSQAIR 302 (302)
T ss_pred CCcchhHhhcccCchhhHHHHhhccchhhccccC
Confidence 9999999999999999999999999999999998
No 2
>PRK15196 secreted effector protein PipB2; Provisional
Probab=99.87 E-value=4.3e-23 Score=173.64 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=49.4
Q ss_pred CCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCcccccccc
Q psy17757 87 DMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL 166 (225)
Q Consensus 87 ~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l 166 (225)
.+++|.++.|.+++|.++.|.++.|.+++|.+|+|++++|.+++|.+|.+.++.+.+++|.+++|.+++|.+++|.+++|
T Consensus 195 ~~AnLs~a~f~~a~L~~A~L~~a~l~~A~f~~~nLs~a~L~~a~L~~a~l~~anL~gAnL~~a~f~~a~L~~anfs~A~L 274 (350)
T PRK15196 195 KGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATL 274 (350)
T ss_pred cCcchhhhhhccCccccceecccccceeEccCCEEeccchhhhhhcCcccccccccccccccccccccccccCccccccc
Confidence 33333333333333333333333333333333444333333333333333333333333333333333333333333333
Q ss_pred Cceee----------cccccccccccCcccCcccccCCCcCCccccCCcccccccccc
Q psy17757 167 KNANL----------QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM 214 (225)
Q Consensus 167 ~~~~f----------~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~~ 214 (225)
++++| .+|+|++++|.+++|++++|++++|.+++|++++++++++.++
T Consensus 275 ~~a~f~~a~L~~A~f~~A~L~~Adf~~a~L~gadfs~A~L~~a~f~~a~l~~~~~~~~ 332 (350)
T PRK15196 275 QGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTHLRTEDA 332 (350)
T ss_pred cccccccceecccccceeeccccEeeCCEecCCCCCCCccCCCccCCCCcccceecCc
Confidence 33333 3333333333333333333444444444444444444444444
No 3
>PRK15196 secreted effector protein PipB2; Provisional
Probab=99.87 E-value=3e-23 Score=174.55 Aligned_cols=14 Identities=29% Similarity=0.147 Sum_probs=7.9
Q ss_pred CCCChHHHHHHHHh
Q psy17757 32 SPTYFEPILNYLRN 45 (225)
Q Consensus 32 d~~~F~~iL~~lr~ 45 (225)
++.-|..|..-+++
T Consensus 120 ~~~~f~~~~~~~~~ 133 (350)
T PRK15196 120 PLASFEKICRALLF 133 (350)
T ss_pred CHHHHHHHHHHHHH
Confidence 44446666665555
No 4
>PRK09718 hypothetical protein; Validated
Probab=99.82 E-value=4.7e-21 Score=162.86 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=77.9
Q ss_pred ccccccccceeeeccccccccccceecCccccCCcccCccccccccCceeecccccccccccCccc---CcccccCCCcC
Q psy17757 121 LSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADL---ENCDLSGSDLH 197 (225)
Q Consensus 121 f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l---~~~~f~~~~l~ 197 (225)
|.++.+.++.|.+|++.++.+.++.+.++.|.+|.|.+++|.++.|+++.|.+|+|.+|+|.+|+| +++.|.+|+|.
T Consensus 142 FarA~L~rvsFinCKLsGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt 221 (512)
T PRK09718 142 FKCRRLHNVIFIKASGEYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLT 221 (512)
T ss_pred cccceecceEEEeccccCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCC
Confidence 333445556777777777777788888888899999999999999999999999999999999998 68888888888
Q ss_pred CccccCCcccccccccc
Q psy17757 198 EANLRGANLKDAALELM 214 (225)
Q Consensus 198 ~a~~~~~~l~~~~~~~~ 214 (225)
+++|.+|+|++++|..|
T Consensus 222 ~AdF~qT~LkgVDFSdC 238 (512)
T PRK09718 222 AVMFDHVRISTGNFKDC 238 (512)
T ss_pred CCCcCCCcCCCcccccc
Confidence 88888888888888865
No 5
>PRK15197 secreted effector protein PipB; Provisional
Probab=99.80 E-value=4.4e-20 Score=150.58 Aligned_cols=70 Identities=29% Similarity=0.389 Sum_probs=37.0
Q ss_pred cceecCccccCCcccCccccccccCceeecccccccccccCcccCcccccCCCcCCc-cccCCcccccccc
Q psy17757 143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEA-NLRGANLKDAALE 212 (225)
Q Consensus 143 ~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a-~~~~~~l~~~~~~ 212 (225)
+++|.+++|.+++|.+++|.+++|.+++|.++.|.+|+|.+++|.+++|.+++|.++ +|.+++|+++++.
T Consensus 203 ~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~L~gAdLs~A~L~gAnL~~A~L~~a~~L~gad~~ga~~t 273 (291)
T PRK15197 203 AVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGADLTGSQHT 273 (291)
T ss_pred ccchhhhhhhhceeccCcCceeecCccCcCCCEeCCCCcCCCCCCCCCCCccccccCCCCCCCcccCCccC
Confidence 444555555555555555555555555555555555555555555555555555555 5555555555554
No 6
>PRK15197 secreted effector protein PipB; Provisional
Probab=99.79 E-value=6e-20 Score=149.81 Aligned_cols=116 Identities=29% Similarity=0.371 Sum_probs=69.3
Q ss_pred CCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccCc
Q psy17757 89 MPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKN 168 (225)
Q Consensus 89 ~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~ 168 (225)
++|++++|.+++|.++.|.+++|.+++|.+++|++++|.+++|. +++|.+++|.+++|.+++|.+++|++
T Consensus 154 ldL~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~----------~AnL~~A~f~~a~f~~Anf~~AdL~~ 223 (291)
T PRK15197 154 LNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLC----------CANLHAVNLMGSNMTKANLTHADLTC 223 (291)
T ss_pred ccCCCCCCCCCCCCCCcCCCCcccCccccccCcCCccccccccC----------CcEecccchhhhhhhhceeccCcCce
Confidence 44444555554555555555555555555555555555555555 66666666666666666666666666
Q ss_pred eeecccccccccccCcccCcccccCCCcCCccccCC-cccccccccc
Q psy17757 169 ANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGA-NLKDAALELM 214 (225)
Q Consensus 169 ~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~-~l~~~~~~~~ 214 (225)
++|.+++|.+|.|.+++|++++|.+++|.+++|.++ +|++++|+++
T Consensus 224 A~Ls~A~L~gA~L~gAdLs~A~L~gAnL~~A~L~~a~~L~gad~~ga 270 (291)
T PRK15197 224 ANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGADLTGS 270 (291)
T ss_pred eecCccCcCCCEeCCCCcCCCCCCCCCCCccccccCCCCCCCcccCC
Confidence 666666666666666666666666666666666666 6666666655
No 7
>PRK09718 hypothetical protein; Validated
Probab=99.78 E-value=3.5e-20 Score=157.62 Aligned_cols=70 Identities=13% Similarity=0.297 Sum_probs=29.5
Q ss_pred cceecCccccCCcccCccccccccCceeecccccccccccCcccCcccccCCCc---CCccccCCcccccccc
Q psy17757 143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL---HEANLRGANLKDAALE 212 (225)
Q Consensus 143 ~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l---~~a~~~~~~l~~~~~~ 212 (225)
+|.+.+++|.++.+.++.|.+|.|..++|.+|+|+++.|.+|+|.+|+|++|+| +++.|.+++|.+++|.
T Consensus 154 nCKLsGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~AdF~ 226 (512)
T PRK09718 154 KASGEYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFD 226 (512)
T ss_pred eccccCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCCCcC
Confidence 333333333333333334444444444444444444444444444444444444 3444444444444444
No 8
>COG1357 Pentapeptide repeats containing protein [Function unknown]
Probab=99.72 E-value=1e-17 Score=135.00 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=22.4
Q ss_pred CCCCCcchhhhhhhhhccCCCCCceee---cccccCCcccccccccceeeeccccc
Q psy17757 86 RDMMPLSRRDVINALILTPITAELRFQ---GVNLAGSDLSRLDLRNINFKVRKGLT 138 (225)
Q Consensus 86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~---~~~l~~~~f~~~~l~~~~f~~~~~~~ 138 (225)
+.+++|.++++.++++.++++.+++|. +++|.+++|++++|++++|.++.+.+
T Consensus 82 l~~~~l~~~~l~~a~l~~anl~~~~l~~~~~a~l~~a~l~~a~l~~a~l~~a~l~~ 137 (238)
T COG1357 82 LSGADLEGANLRGANLSGANLSGANLSNATRANLSGADLSGANLSNANLTGANLSG 137 (238)
T ss_pred CCCCcccccccCccccCCCcccCCCcccccccCcCCCCCCcCccccCccCcCccCC
Confidence 344444444444444444444444444 34444444444444444444443333
No 9
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.70 E-value=1.4e-17 Score=148.56 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=52.1
Q ss_pred CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccce-eeeccccccccccceecCccccCCcccCcccccc
Q psy17757 86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNIN-FKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVA 164 (225)
Q Consensus 86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~-f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a 164 (225)
+.++++.++.+.++++.+++|.+++|.+|+|++++|++++|++++ |++|++.++.+.+|+|.++.|.+|+|.+++|.++
T Consensus 177 Ls~Adl~~A~Le~vdFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A 256 (782)
T PRK15377 177 LTDARLRQEAGEELTYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDV 256 (782)
T ss_pred cccCccccCcCccCCcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcC
Confidence 444455555555555555555555555555555555555555555 5544444444445555555555555555555555
Q ss_pred ccCceeecccccccccccCc
Q psy17757 165 TLKNANLQNCDLRAAVLAGA 184 (225)
Q Consensus 165 ~l~~~~f~~~~l~~a~f~~~ 184 (225)
.|.+++|.+|+|.+|+|.++
T Consensus 257 ~L~~AdFsgAdLkgADLSgS 276 (782)
T PRK15377 257 VCSNTKFSNSDMNEASLKYS 276 (782)
T ss_pred EeCCCEecCCCCCCCCCCCC
Confidence 55555555555555555555
No 10
>KOG1665|consensus
Probab=99.70 E-value=5.4e-18 Score=130.44 Aligned_cols=73 Identities=32% Similarity=0.474 Sum_probs=30.7
Q ss_pred ccccceecCccccCCcccCccccccccCceeecccccccccccCcccCcccccCCCcCCccccCCccccccccc
Q psy17757 140 PACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213 (225)
Q Consensus 140 ~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~ 213 (225)
.++++++.++++..++|.++++.+++++++++.++++.+|+|+++++..+++.++++++|.+. +.+.++.+++
T Consensus 227 ~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAnLRg~Nlk~A~~e-~mltplhMsq 299 (302)
T KOG1665|consen 227 DMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEANLRGVNLKEAHME-AMLTPLHMSQ 299 (302)
T ss_pred cccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhhcccCchhhHHHH-hhccchhhcc
Confidence 333334444444444444444444444444444444444444444444444444444444444 4444444443
No 11
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.66 E-value=1.6e-17 Score=148.26 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=29.8
Q ss_pred CcchhhhhhhhhccCCCCCceeecccccCCc-ccccccccceeeeccccccccccceecCccccCCcccCccccccccCc
Q psy17757 90 PLSRRDVINALILTPITAELRFQGVNLAGSD-LSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKN 168 (225)
Q Consensus 90 ~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~-f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~ 168 (225)
+|.+++|.+++|.+++|.+++|.++.|.+++ |.+|+|.+++|.+|++.++.+.+|+|.+++|.+|+|.+++|.+|+|.+
T Consensus 191 dFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgAdLkg 270 (782)
T PRK15377 191 TYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNE 270 (782)
T ss_pred CcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCCCCCC
Confidence 3333333333333333333333333333333 333333333333333333333333333333333333333333333333
Q ss_pred ee
Q psy17757 169 AN 170 (225)
Q Consensus 169 ~~ 170 (225)
++
T Consensus 271 AD 272 (782)
T PRK15377 271 AS 272 (782)
T ss_pred CC
Confidence 33
No 12
>KOG2715|consensus
Probab=99.63 E-value=3.7e-16 Score=114.96 Aligned_cols=80 Identities=46% Similarity=0.769 Sum_probs=74.2
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHHHh
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMS 81 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~~~ 81 (225)
|++++|++. +.|++.|+.|+|||||||.+|.+||||+|.|++.+++ +..+++|.||+||++..+++.+++.+.+
T Consensus 47 l~rl~q~~~-----~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 47 LYRLCQREK-----DLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-LSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred HHHHHhccc-----CCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh-hhhhccchhhhccCChHHHHHHHHHHHH
Confidence 788999998 8999999999999999999999999999999999988 7889999999999999999999999987
Q ss_pred hcccCC
Q psy17757 82 RERSRD 87 (225)
Q Consensus 82 ~~~~~~ 87 (225)
.+..+.
T Consensus 121 Rd~~~t 126 (210)
T KOG2715|consen 121 RDAMVT 126 (210)
T ss_pred Hhhhcc
Confidence 775443
No 13
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.39 E-value=2.5e-13 Score=90.50 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=11.4
Q ss_pred ecccccccccccCcccCcccccCCCcCCccc
Q psy17757 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANL 201 (225)
Q Consensus 171 f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~ 201 (225)
|.+|.|.++.|.++++.++.|.+++|.+++|
T Consensus 39 f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f 69 (78)
T PF13599_consen 39 FSNCQLDNSDFSNCDLKRASFSNCDLDNCDF 69 (78)
T ss_dssp ETTEBETTEBETTSBETTEEETTEB-TTEEE
T ss_pred EECCCCCCCEEEeCEEeCCEEecCCccCCEe
Confidence 3333333333333333333333333333333
No 14
>KOG2716|consensus
Probab=99.18 E-value=1.9e-11 Score=96.43 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=65.3
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCC-hHhHHhhhhccCcccchHHHHHHH
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNIN-PEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~-~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
|+++|+..+. +.+.++.|.+||||.|.+|+.|||++|.|.+.++.... ...++.||+||.++.|++.++..+
T Consensus 29 ~fk~m~e~~i-------~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i 101 (230)
T KOG2716|consen 29 FFKTMLETDI-------PVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAI 101 (230)
T ss_pred HHHHHhhcCC-------ccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 5788888875 78999999999999999999999999999999876554 578999999999999999998876
Q ss_pred Hh
Q psy17757 80 MS 81 (225)
Q Consensus 80 ~~ 81 (225)
..
T Consensus 102 ~~ 103 (230)
T KOG2716|consen 102 AR 103 (230)
T ss_pred hh
Confidence 33
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.13 E-value=1.3e-11 Score=85.45 Aligned_cols=65 Identities=45% Similarity=0.784 Sum_probs=49.8
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHh-CCcccCCCCChHhHHhhhhccCcccc
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGVLEEARFFGIESL 71 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~-g~i~l~~~~~~~~vl~ea~F~~~~~l 71 (225)
+|++|++++ ......+++++|||||||.+|++||+|+|. +.++.+.......+++||+||++..+
T Consensus 24 ~l~~~~~~~------~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l 89 (94)
T PF02214_consen 24 LLARLFSGE------RSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDEL 89 (94)
T ss_dssp TTTSHHHTG------HGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHH
T ss_pred hhhhHHhhc------cccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCcc
Confidence 466777765 125677899999999999999999999999 67766667778999999999999765
No 16
>KOG2714|consensus
Probab=98.91 E-value=1.4e-09 Score=91.73 Aligned_cols=66 Identities=36% Similarity=0.630 Sum_probs=55.2
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHH-hhhhccCcccchHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL-EEARFFGIESLVPQL 75 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl-~ea~F~~~~~l~~~l 75 (225)
|..+++++. .+.+++.+++||||||..|.+||++||+|.+++.. ...+.+| +||.||++..+.+.+
T Consensus 38 fsaL~s~~~-------~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g-~~~~~llhdEA~fYGl~~llrrl 104 (465)
T KOG2714|consen 38 FSALLSGRI-------NSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASG-VFPERLLHDEAMFYGLTPLLRRL 104 (465)
T ss_pred HHHHhcCcc-------ccccCCCCceEecCCchHHHHHHHHHhcCCCCCcc-CchhhhhhhhhhhcCcHHHHHHh
Confidence 456777764 89999999999999999999999999999999944 5555544 599999999887743
No 17
>KOG2723|consensus
Probab=98.81 E-value=4.4e-09 Score=82.50 Aligned_cols=72 Identities=39% Similarity=0.582 Sum_probs=60.2
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCC-hHhHHhhhhccCcccchHHHHHHH
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNIN-PEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~-~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
||+.||.++. +..++..|.||||||+..|++||++||..+..++.... ...+.+||+||++..+...+.+..
T Consensus 34 ~L~~~f~~~~-------~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 34 MLARMFSGEL-------PLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred HHHhhcCCCC-------CccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhccc
Confidence 7899999965 89999999999999999999999999997777766554 567889999999997666444333
No 18
>KOG4390|consensus
Probab=97.45 E-value=5.5e-05 Score=63.75 Aligned_cols=47 Identities=34% Similarity=0.656 Sum_probs=40.8
Q ss_pred CCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCc
Q psy17757 22 DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGI 68 (225)
Q Consensus 22 ~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~ 68 (225)
.+.|+||+||||.+|++||++.|.|+++.+........=+|-.||++
T Consensus 77 ~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeELaF~Gl 123 (632)
T KOG4390|consen 77 EDTGEYFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDEELAFYGL 123 (632)
T ss_pred CCcccccccCChHHHHHHHHHhhcCcccCchHHHHHHhhhhhhHhcc
Confidence 46899999999999999999999999998776666666677788876
No 19
>KOG3713|consensus
Probab=97.40 E-value=0.00013 Score=63.33 Aligned_cols=49 Identities=33% Similarity=0.650 Sum_probs=45.7
Q ss_pred CCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccc
Q psy17757 23 STGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESL 71 (225)
Q Consensus 23 ~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l 71 (225)
...+||.||+|..|.+|+++.+.|+++.+..+......+|-+|.+++..
T Consensus 79 ~~~EyfFDR~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~~ 127 (477)
T KOG3713|consen 79 VTNEYFFDRHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDEA 127 (477)
T ss_pred ccCeeeeccChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCChh
Confidence 4789999999999999999999999999999999999999999998653
No 20
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=95.77 E-value=0.0033 Score=41.56 Aligned_cols=63 Identities=32% Similarity=0.497 Sum_probs=48.0
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVP 73 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~ 73 (225)
+++||++.. .........+.+.++..|+.+|+|+..+.+.+... ....++..|++++++.+..
T Consensus 25 f~~~~~~~~--------~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~-~~~~l~~~a~~~~~~~l~~ 87 (90)
T smart00225 25 FKALFSGDF--------KESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE-NVEELLELADYLQIPGLVE 87 (90)
T ss_pred HHHHHcCCC--------ccCCCCEEEecCCCHHHHHHHHHeecCceeecCHH-HHHHHHHHHHHHCcHHHHh
Confidence 567777664 11244555666889999999999999998877664 6678999999999876654
No 21
>KOG3840|consensus
Probab=91.23 E-value=0.15 Score=42.23 Aligned_cols=62 Identities=18% Similarity=0.433 Sum_probs=51.7
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcC--CCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCc
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDR--SPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGI 68 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidr--d~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~ 68 (225)
||..||.++. .....+|+|+|=+-- -...|+.||.|.+.|-+..++.+..-.+-+.|+|--+
T Consensus 121 mlg~mf~~g~------~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 121 MLGRMFSMGA------DLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLV 184 (438)
T ss_pred hhhhhhcccc------cccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEe
Confidence 7899999985 457789999997754 3456999999999999999999988888888888644
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=85.61 E-value=0.87 Score=40.72 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=53.1
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE--cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI--DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi--drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++. ..++ +....+ +=++..++.||+|+=.|++.+.. ...+.+|..|.+.+++.+.+.+.+.+
T Consensus 47 FraMF~~~~------~Es~---~~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~~ll~aA~~Lqi~~v~~~C~~fL 116 (480)
T PHA02790 47 FRTHLRQKY------TKNK---DPVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVVNLLRASILTSVEFIIYTCINFI 116 (480)
T ss_pred HHHHhcCCc------cccc---cceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHHHHHHHHHHhChHHHHHHHHHHH
Confidence 578999986 1221 223443 67888899999999999999976 45889999999999988888877777
No 23
>PHA03098 kelch-like protein; Provisional
Probab=83.75 E-value=0.7 Score=41.72 Aligned_cols=65 Identities=20% Similarity=0.337 Sum_probs=51.9
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++.. ++...+-+ ++..|+.+|+|+-.|++.+.... ...++.-|++++++.+...+.+.+
T Consensus 37 F~~mf~~~~~-----------~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~-~~~ll~~A~~l~~~~l~~~C~~~l 101 (534)
T PHA03098 37 FKKMFKNNFK-----------ENEINLNI-DYDSFNEVIKYIYTGKINITSNN-VKDILSIANYLIIDFLINLCINYI 101 (534)
T ss_pred HHHHHhCCCC-----------CceEEecC-CHHHHHHHHHHhcCCceEEcHHH-HHHHHHHHHHhCcHHHHHHHHHHH
Confidence 5679988861 23344555 89999999999999999886644 888999999999999887777666
No 24
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=73.22 E-value=2.5 Score=29.06 Aligned_cols=51 Identities=29% Similarity=0.430 Sum_probs=42.4
Q ss_pred EcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 29 IDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 29 idrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
-+-++..|+.+++|+-.|.+.++.......++.-|+.++++.+...+.+.+
T Consensus 57 ~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l 107 (111)
T PF00651_consen 57 PDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFL 107 (111)
T ss_dssp TTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred ccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 345788899999999888887763556888999999999999999888776
No 25
>KOG1545|consensus
Probab=71.74 E-value=0.75 Score=39.15 Aligned_cols=48 Identities=29% Similarity=0.486 Sum_probs=39.6
Q ss_pred CCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCC-hHhHHhhhhccCcc
Q psy17757 22 DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNIN-PEGVLEEARFFGIE 69 (225)
Q Consensus 22 ~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~-~~~vl~ea~F~~~~ 69 (225)
.-+.+||.||+---|..||-|.+.|+-.-++.+. ..-.++|..||++.
T Consensus 99 plrNEyFFDRnRpSFdaILYyYQSGGRlrRPvnVPlDiF~eEirFyqlG 147 (507)
T KOG1545|consen 99 PLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFLEEIRFYQLG 147 (507)
T ss_pred ccchhhcccCCCCccceEEEEeecCceecCCccccHHHHHHHHHHHHhh
Confidence 4567899999999999999999999887666555 45566899999874
No 26
>KOG4441|consensus
Probab=60.49 E-value=6.7 Score=36.02 Aligned_cols=69 Identities=25% Similarity=0.382 Sum_probs=53.7
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
++.||+++. .....+-.-+.+=+|..++.+++|+=.+.+.+.. ...+.++..|.++++....+...+.+
T Consensus 62 FraMFt~~l--------~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL 130 (571)
T KOG4441|consen 62 FRAMFTSGL--------KESKQKEINLEGVDPETLELLLDYAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFL 130 (571)
T ss_pred HHHHhcCCc--------ccccceEEEEecCCHHHHHHHHHHhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 568999875 3333344455567999999999999999998854 56788999999999988888776666
No 27
>PHA02713 hypothetical protein; Provisional
Probab=59.14 E-value=7.7 Score=35.47 Aligned_cols=67 Identities=24% Similarity=0.238 Sum_probs=49.6
Q ss_pred HHHHhccCCCCCccCCCCccC-CCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVD-STGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++. .... ++...+-+-++..++.||.|+=.|.+. ....+.+|.-|.+++++.+.+...+.+
T Consensus 52 F~amF~~~~--------~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i~---~~nv~~ll~aA~~lqi~~l~~~C~~~l 119 (557)
T PHA02713 52 FRTLFTTPM--------IIRDLVTRVNLQMFDKDAVKNIVQYLYNRHIS---SMNVIDVLKCADYLLIDDLVTDCESYI 119 (557)
T ss_pred HHHHhcCCc--------hhhccCceEEeccCCHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 568999875 1111 223345567899999999999998742 345788999999999999888777776
No 28
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=58.41 E-value=8 Score=33.45 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=3.9
Q ss_pred cceecCccc
Q psy17757 143 SVNLKGANL 151 (225)
Q Consensus 143 ~a~~~~~~f 151 (225)
++..++|.|
T Consensus 167 ~~~VrGC~F 175 (386)
T PF01696_consen 167 GGEVRGCTF 175 (386)
T ss_pred CcEEeeeEE
Confidence 344444444
No 29
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=35.74 E-value=14 Score=31.95 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=5.4
Q ss_pred cccccceeeec
Q psy17757 124 LDLRNINFKVR 134 (225)
Q Consensus 124 ~~l~~~~f~~~ 134 (225)
+..+||.|.+|
T Consensus 168 ~~VrGC~F~~C 178 (386)
T PF01696_consen 168 GEVRGCTFYGC 178 (386)
T ss_pred cEEeeeEEEEE
Confidence 44455555444
No 30
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=25.15 E-value=13 Score=22.89 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCCCCEEEcCCCCChHHHHHHHHhCCcccC
Q psy17757 22 DSTGAYLIDRSPTYFEPILNYLRNGQLVLD 51 (225)
Q Consensus 22 ~~~~~~fidrd~~~F~~iL~~lr~g~i~l~ 51 (225)
.-++++.|+-|+.. |.|.--|.|++.+.
T Consensus 35 gg~~~i~I~H~Ga~--Y~lr~Tr~GKLiLt 62 (63)
T COG4256 35 GGDGKIIIDHDGAE--YLLRKTRAGKLILT 62 (63)
T ss_pred cCCCeEEEecCCce--EEEeeeecceeeec
Confidence 34678999999999 88888888888764
No 31
>PF08251 Mastoparan_2: Mastoparan peptide; InterPro: IPR013214 Mastoparan (MP) peptides I, II and III are extracted from the venom gland of Protopolybia exigua (Neotropical social wasp). They are tetradecapeptides presenting from seven to ten hydrophobic amino acid residues and from two to four lysine residues in their primary sequences. These peptides cause the degranulation of mast cells. Protopolybia-MP-I also causes haemolysis of erythrocytes.
Probab=20.95 E-value=12 Score=15.76 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=6.3
Q ss_pred HHHHHhCCcc
Q psy17757 40 LNYLRNGQLV 49 (225)
Q Consensus 40 L~~lr~g~i~ 49 (225)
++|++.|+..
T Consensus 1 inwlklgk~v 10 (14)
T PF08251_consen 1 INWLKLGKMV 10 (14)
T ss_pred CcHHHHHHHH
Confidence 3677777653
Done!