Query psy17757
Match_columns 225
No_of_seqs 216 out of 1615
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 22:06:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j8k_A NP275-NP276; pentapepti 99.9 1.6E-26 5.6E-31 180.8 10.1 173 34-217 21-193 (201)
2 2j8k_A NP275-NP276; pentapepti 99.9 2.6E-24 8.9E-29 168.3 9.9 24 189-212 160-183 (201)
3 2w7z_A EFSQNR, pentapeptide re 99.9 2.1E-26 7.3E-31 182.0 -3.4 128 86-213 72-199 (214)
4 2xty_A QNRB1; cell cycle, pent 99.9 1.6E-24 5.6E-29 171.5 7.3 41 99-139 57-97 (217)
5 2xt2_A ALBG, MCBG-like protein 99.9 6E-25 2E-29 171.8 4.0 126 86-211 31-162 (200)
6 2o6w_A Repeat five residue (RF 99.9 5.1E-24 1.7E-28 159.2 8.6 130 84-215 13-142 (150)
7 2bm5_A MFPA, RV3361C, pentapep 99.9 3E-25 1E-29 171.8 1.4 119 88-206 34-152 (186)
8 2bm5_A MFPA, RV3361C, pentapep 99.9 3.6E-24 1.2E-28 165.7 6.7 127 86-212 42-168 (186)
9 2w7z_A EFSQNR, pentapeptide re 99.9 1.1E-24 3.7E-29 172.2 3.1 130 85-214 51-180 (214)
10 3du1_X ALL3740 protein, HETL; 99.9 7.4E-24 2.5E-28 171.8 7.0 37 34-70 21-57 (257)
11 3du1_X ALL3740 protein, HETL; 99.9 5.3E-24 1.8E-28 172.6 5.6 30 183-212 207-236 (257)
12 2xty_A QNRB1; cell cycle, pent 99.9 1.3E-24 4.5E-29 172.0 1.9 40 91-130 69-108 (217)
13 2xt2_A ALBG, MCBG-like protein 99.9 7.8E-25 2.7E-29 171.1 0.5 131 84-214 49-185 (200)
14 2o6w_A Repeat five residue (RF 99.9 2E-23 7E-28 155.9 6.4 127 81-212 15-144 (150)
15 3pss_A QNR; pentapeptide repea 99.9 2E-23 7E-28 164.9 2.4 37 98-134 55-91 (216)
16 2f3l_A RFR-domain; beta helix, 99.9 2.7E-22 9.3E-27 154.6 6.1 108 105-212 48-160 (184)
17 2f3l_A RFR-domain; beta helix, 99.8 4.8E-22 1.6E-26 153.3 3.6 115 86-210 49-163 (184)
18 3n90_A P15, thylakoid lumenal 99.8 2.6E-21 8.9E-26 144.8 7.0 28 105-132 17-44 (152)
19 3nb2_A Secreted effector prote 99.8 9.6E-21 3.3E-25 167.7 9.3 47 166-212 103-152 (613)
20 3n90_A P15, thylakoid lumenal 99.8 6.1E-21 2.1E-25 142.8 6.3 44 89-132 6-49 (152)
21 3nb2_A Secreted effector prote 99.8 5E-20 1.7E-24 163.2 8.1 114 86-199 34-154 (613)
22 2qyu_A Secreted effector prote 99.7 3.8E-17 1.3E-21 143.1 5.9 45 88-132 39-89 (627)
23 2qyu_A Secreted effector prote 99.6 1.1E-16 3.6E-21 140.3 5.7 72 143-214 80-154 (627)
24 3drz_A BTB/POZ domain-containi 99.6 6.1E-16 2.1E-20 108.6 3.8 75 1-80 31-105 (107)
25 3drx_A BTB/POZ domain-containi 99.5 1E-14 3.5E-19 112.0 7.4 79 1-84 37-115 (202)
26 3kvt_A Potassium channel prote 99.4 2.4E-13 8.3E-18 96.1 4.9 63 1-71 30-92 (115)
27 1t1d_A Protein (potassium chan 99.4 2.6E-13 8.7E-18 93.5 3.6 64 1-72 26-90 (100)
28 1nn7_A Potassium channel KV4.2 99.2 5.3E-12 1.8E-16 87.9 3.2 54 19-72 34-87 (105)
29 1s1g_A Potassium voltage-gated 99.2 6.9E-12 2.4E-16 89.7 3.1 54 19-72 47-100 (124)
30 2nz0_B Potassium voltage-gated 99.1 1.2E-11 4E-16 90.3 2.2 54 19-72 69-122 (140)
31 2r9r_B Paddle chimera voltage 98.6 6.9E-09 2.4E-13 91.5 1.8 64 1-72 77-141 (514)
32 1r29_A B-cell lymphoma 6 prote 92.6 0.14 4.8E-06 35.7 4.3 67 2-79 55-123 (127)
33 2vpk_A Myoneurin; transcriptio 91.5 0.23 8E-06 33.9 4.3 64 2-79 48-114 (116)
34 2vkp_A BTB/POZ domain-containi 90.0 0.23 7.8E-06 33.4 3.1 67 2-79 38-105 (109)
35 2z8h_A Transcription regulator 88.3 0.58 2E-05 33.0 4.4 66 2-79 62-129 (138)
36 3ga1_A Nucleus accumbens-assoc 88.0 0.22 7.7E-06 34.8 1.9 64 2-79 59-124 (129)
37 3htm_A Speckle-type POZ protei 87.8 0.34 1.2E-05 35.4 3.0 68 2-79 60-128 (172)
38 2ppi_A Gigaxonin; BTB domain, 87.0 0.33 1.1E-05 34.7 2.4 68 2-77 73-141 (144)
39 2if5_A Zinc finger and BTB dom 86.0 0.32 1.1E-05 33.4 1.8 68 2-79 51-119 (120)
40 3hve_A Gigaxonin; ubiquitin, c 86.0 0.61 2.1E-05 36.6 3.7 70 2-79 57-127 (256)
41 3b84_A Zinc finger and BTB dom 84.3 0.78 2.7E-05 31.4 3.1 64 2-79 50-114 (119)
42 2yy9_A Zinc finger and BTB dom 81.9 0.75 2.6E-05 32.3 2.3 49 30-79 67-115 (135)
43 3i3n_A Kelch-like protein 11; 80.6 0.65 2.2E-05 36.9 1.8 68 2-79 61-135 (279)
44 4eoz_A Speckle-type POZ protei 79.4 0.22 7.4E-06 35.3 -1.3 68 2-79 51-119 (145)
45 2ihc_A Transcription regulator 79.1 0.6 2.1E-05 32.3 1.0 64 2-77 55-120 (124)
46 1buo_A POZ domain, protein (pr 78.0 1.2 4.2E-05 30.4 2.3 49 30-79 69-117 (121)
47 3ohu_A Transcription regulator 71.4 2.5 8.7E-05 28.9 2.6 60 2-73 58-119 (125)
48 3hqi_A Speckle-type POZ protei 70.9 1.2 4.2E-05 35.9 0.9 68 2-79 200-268 (312)
49 2q81_A MIZ-1 protein; BTB/POZ 61.3 4.8 0.00016 27.3 2.4 47 32-79 70-116 (119)
50 3fkc_A Transcriptional regulat 55.8 2.2 7.6E-05 29.0 -0.2 42 30-72 72-114 (116)
51 3m5b_A Zinc finger and BTB dom 53.4 3.4 0.00011 28.3 0.4 48 31-79 68-115 (119)
52 4eqa_C PA1845 protein, putativ 23.4 42 0.0014 22.4 1.9 31 3-35 28-58 (153)
53 3vpj_E TSE1-specific immunity 21.3 47 0.0016 23.0 1.9 31 3-35 67-97 (192)
No 1
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=99.93 E-value=1.6e-26 Score=180.84 Aligned_cols=173 Identities=30% Similarity=0.272 Sum_probs=97.0
Q ss_pred CChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHHHhhcccCCCCCcchhhhhhhhhccCCCCCceeec
Q psy17757 34 TYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQG 113 (225)
Q Consensus 34 ~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~f~~ 113 (225)
-.-+.++..+..|...+....+....+.+++|.++.. ..+.+.+++|++++|.+++|.++.|.+++|.+
T Consensus 21 m~~~~ll~~~~~g~~~~~~~dl~~~~l~~~~l~~~~l-----------~~a~l~~a~l~~a~ls~a~l~~a~l~~a~l~~ 89 (201)
T 2j8k_A 21 MDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAIL-----------HGAMLDEANLQQANLSRADLSGATLNGADLRG 89 (201)
T ss_dssp CCHHHHHHHHHTTCCBCTTCBCTTCBCTTCBCTTCBC-----------TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred CCHHHHHHHHHcCccccccCcCCCCccCCCccCCCCc-----------CCCccCCCccCCCccCcCCCCCCCcCCcCcCC
Confidence 3345677777777766666555555555555544432 22234444444444444444444444444444
Q ss_pred ccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccCceeecccccccccccCcccCcccccC
Q psy17757 114 VNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSG 193 (225)
Q Consensus 114 ~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~ 193 (225)
|+|.+++|.+++|.++.|.++.+.++.+.+++|.+++|.+++|.+++|.+|+|.+++|.+|+|++|+|.+++|.+++|.+
T Consensus 90 a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~L~~a~l~~a~l~~a~l~~ 169 (201)
T 2j8k_A 90 ANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQ 169 (201)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred CEECCCCccCCccCCCEeCccCcCCCCcccCcCccccccCCEEeCCEeeecCcCcCCCCCCCCCCCCcCCCEeCCCCcCC
Confidence 44444444444444444444444444555555555555555555666666666666666666666666666666666666
Q ss_pred CCcCCccccCCccccccccccccc
Q psy17757 194 SDLHEANLRGANLKDAALELMLTP 217 (225)
Q Consensus 194 ~~l~~a~~~~~~l~~~~~~~~~~~ 217 (225)
++|.+++|++++|++++|++++.+
T Consensus 170 a~l~~a~l~~a~l~~a~l~ga~l~ 193 (201)
T 2j8k_A 170 AALERANLTGANLEDANLEGTILE 193 (201)
T ss_dssp CBCTTCBCTTCBCTTCBCTTSTTT
T ss_pred CCCCCCCCCCCCcCCCEECcCCCC
Confidence 666666666666666666665543
No 2
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=99.91 E-value=2.6e-24 Score=168.32 Aligned_cols=24 Identities=50% Similarity=0.675 Sum_probs=8.9
Q ss_pred ccccCCCcCCccccCCcccccccc
Q psy17757 189 CDLSGSDLHEANLRGANLKDAALE 212 (225)
Q Consensus 189 ~~f~~~~l~~a~~~~~~l~~~~~~ 212 (225)
++|.+++|.+++|.+++|++++|+
T Consensus 160 a~l~~a~l~~a~l~~a~l~~a~l~ 183 (201)
T 2j8k_A 160 ADLHQANLHQAALERANLTGANLE 183 (201)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred CEeCCCCcCCCCCCCCCCCCCCcC
Confidence 333333333333333333333333
No 3
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.90 E-value=2.1e-26 Score=182.04 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=79.6
Q ss_pred CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccc
Q psy17757 86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165 (225)
Q Consensus 86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~ 165 (225)
+.++.|.+|+|.+++|.++.|.++.|.+|+|.+++|++++|.++.|.+|++.++.+.+++|.++.|.+|+|.+++|.+|+
T Consensus 72 l~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~ 151 (214)
T 2w7z_A 72 CSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVT 151 (214)
T ss_dssp EEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCE
T ss_pred ecCCEEEeeECcCCCccCCEEEeeEEeCCeeeCCCcCCCEeeeeEEeCCCCCCCcCCcCccCceEEEecccCCCCccCCE
Confidence 34444555555555555555555555566666666666666666666666666666666666666666666666666666
Q ss_pred cCceeecccccccccccCcccCcccccCCCcCCccccCCccccccccc
Q psy17757 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213 (225)
Q Consensus 166 l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~ 213 (225)
|+++.|.+|+|.+++|.+++|++++|++|+|.+++|.+++++|++++.
T Consensus 152 L~~a~f~~~~L~~a~f~~a~l~~~~l~~a~l~~~~~~~a~l~ga~~~~ 199 (214)
T 2w7z_A 152 WXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLXVTP 199 (214)
T ss_dssp EEEEEEESCBCTTCBCTTCCCTTCBCTTSBCSCCBCCGGGCTTCEECH
T ss_pred EEEEEEEecccccCEecCCeeccCCcccCCcCceEcCHHHcCCcccCH
Confidence 666666666666666666666666666666666666666666666663
No 4
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.90 E-value=1.6e-24 Score=171.53 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=17.9
Q ss_pred hhhccCCCCCceeecccccCCcccccccccceeeecccccc
Q psy17757 99 ALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTL 139 (225)
Q Consensus 99 ~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~ 139 (225)
++|.++.|.++.|.+|+|++++|++++|.++.|.+|++.++
T Consensus 57 ~~f~~a~l~~a~f~~~~l~~a~f~~a~l~~a~f~~~~l~~a 97 (217)
T 2xty_A 57 CNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGA 97 (217)
T ss_dssp CBCTTCBCTTCEEESCBCTTCBCTTCBCTTEEEESCBCTTC
T ss_pred cccCCCccCCCCcCCCCCCCCccCCCccCCCcccCCCcCCC
Confidence 44444444444444444444444444444444444433333
No 5
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.90 E-value=6e-25 Score=171.76 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=55.3
Q ss_pred CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccce------ecCccccCCcccCc
Q psy17757 86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVN------LKGANLEGSNMAGV 159 (225)
Q Consensus 86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~------~~~~~f~~~~l~~~ 159 (225)
+.++.|++++|.+++|.++.|.++.|.+|+|++++|+++.|.++.|.+|++.++.+.+++ +.++.|.+|+|.++
T Consensus 31 ~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~l~~a 110 (200)
T 2xt2_A 31 FEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDS 110 (200)
T ss_dssp EESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCBCTTC
T ss_pred EccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCccccc
Confidence 344444444444444444444444444555555444444444444544444444444444 33444444444444
Q ss_pred cccccccCceeecccccccccccCcccCcccccCCCcCCccccCCccccccc
Q psy17757 160 NLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211 (225)
Q Consensus 160 ~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~ 211 (225)
+|.+++|.++.|.+|+|.+++|.+++|++++|++|+|.+++|.+++|++++|
T Consensus 111 ~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f 162 (200)
T 2xt2_A 111 LFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASF 162 (200)
T ss_dssp BCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBC
T ss_pred EEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCc
Confidence 4444444444444444444444444444333333333333333333333333
No 6
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.90 E-value=5.1e-24 Score=159.23 Aligned_cols=130 Identities=19% Similarity=0.186 Sum_probs=82.0
Q ss_pred ccCCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccc
Q psy17757 84 RSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRV 163 (225)
Q Consensus 84 ~~~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~ 163 (225)
..+.+++|++++|.+++|.++.+ +.+.+|+|.+++|++++|.+++|.+|++.++.+.+++|.+++|.+++|.+++|.+
T Consensus 13 ~~~~~~~l~~~dL~~~~l~~~~~--~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~ 90 (150)
T 2o6w_A 13 RECVGCNLEGVNLPRENFGLKYR--IPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSE 90 (150)
T ss_dssp SBCTTCBCTTCBCTTCBCSSSCB--CC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred CCcCCcccCCCCCCCCCcccCcc--cccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecC
Confidence 34556666666666666655532 2445555555555555555555555555555555777777777777777777777
Q ss_pred cccCceeecccccccccccCcccCcccccCCCcCCccccCCccccccccccc
Q psy17757 164 ATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELML 215 (225)
Q Consensus 164 a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~~~ 215 (225)
++|+++.|.+|+|++|+|.+|+|.+++|.+++|.+++|.+++|++++|+++.
T Consensus 91 a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~a~l~ga~ 142 (150)
T 2o6w_A 91 TDLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIE 142 (150)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred CCCCCCEecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCCCCCcCCCE
Confidence 7777777777777777777777777777777777777777777776666553
No 7
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.90 E-value=3e-25 Score=171.80 Aligned_cols=119 Identities=26% Similarity=0.350 Sum_probs=47.1
Q ss_pred CCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccC
Q psy17757 88 MMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLK 167 (225)
Q Consensus 88 ~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~ 167 (225)
+++|++++|.++.|.++.|.++.|.+|+|++++|.+++|.+++|.+|++.+..+.+++|.+++|.+++|.+++|.+|+|.
T Consensus 34 ~~~f~~~~l~~a~l~~~~~~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~ 113 (186)
T 2bm5_A 34 ECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLR 113 (186)
T ss_dssp SCBCTTCBCTTCEEESCEEESCEEESCBCTTCEEEEEECTTCEEESCBCCSCEEEEEECTTCBCTTCBCTTCBCTTCBCT
T ss_pred CCCcCCCCCCCCEecCCCcCCcCcCCceeCCCCcCCCCcCCCcccCCeeccCEEeccCcCcCccCCCccCCCeeccCEEe
Confidence 33333333333333444444444444444444444444444444444333333333333333333333333333333333
Q ss_pred ceeecccccccccccCcccCcccccCCCcCCccccCCcc
Q psy17757 168 NANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206 (225)
Q Consensus 168 ~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l 206 (225)
+++|.+++|++++|.+++|++++|.+++|.+++|+++++
T Consensus 114 ~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l 152 (186)
T 2bm5_A 114 ETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATV 152 (186)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred cCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEe
Confidence 333333333333333333333333333333333333333
No 8
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.90 E-value=3.6e-24 Score=165.72 Aligned_cols=127 Identities=21% Similarity=0.232 Sum_probs=72.0
Q ss_pred CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccc
Q psy17757 86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165 (225)
Q Consensus 86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~ 165 (225)
+.+++|.+++|.++.|.++.|.++.|.+|+|.+++|++++|.+++|.+|++..+.+.+++|++++|.+|+|.+++|.+|+
T Consensus 42 l~~a~l~~~~~~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~ 121 (186)
T 2bm5_A 42 LAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTD 121 (186)
T ss_dssp CTTCEEESCEEESCEEESCBCTTCEEEEEECTTCEEESCBCCSCEEEEEECTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred CCCCEecCCCcCCcCcCCceeCCCCcCCCCcCCCcccCCeeccCEEeccCcCcCccCCCccCCCeeccCEEecCccCCCc
Confidence 44444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCceeecccccccccccCcccCcccccCCCcCCccccCCcccccccc
Q psy17757 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212 (225)
Q Consensus 166 l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~ 212 (225)
|++++|.+|+|.+++|.+++|++++|+++++.++++.+++|+++.++
T Consensus 122 L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~~~a~l~ga~~~ 168 (186)
T 2bm5_A 122 LRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVD 168 (186)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHHHSBCTTCBCC
T ss_pred cCCCCcCCCccCCCEecCCccCCcccCCCEeeccccccCeecccCcC
Confidence 55555555555555555555555555555555555555555555555
No 9
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.89 E-value=1.1e-24 Score=172.23 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=106.5
Q ss_pred cCCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCcccccc
Q psy17757 85 SRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVA 164 (225)
Q Consensus 85 ~~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a 164 (225)
.+.++.|.+++|.+++|.++.|.++.|.+|+|++++|++++|.++.|.+|++.++.+.+++|.++.|.+|+|.+++|.++
T Consensus 51 ~l~~~~f~~~~~~~~~~~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a 130 (214)
T 2w7z_A 51 VFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFA 130 (214)
T ss_dssp EEEEEEEEEEECTTCEEETCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTC
T ss_pred EeccCEEEcCEEeCCccCCCEecCCEEEeeECcCCCccCCEEEeeEEeCCeeeCCCcCCCEeeeeEEeCCCCCCCcCCcC
Confidence 45677778888888888888888888888888889999999999999999888888888888888888888888888888
Q ss_pred ccCceeecccccccccccCcccCcccccCCCcCCccccCCcccccccccc
Q psy17757 165 TLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM 214 (225)
Q Consensus 165 ~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~~ 214 (225)
+|.++.|.+|+|.+++|.+++|++++|.+|+|.+++|.+++|++++|.++
T Consensus 131 ~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~~l~~a 180 (214)
T 2w7z_A 131 NFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQN 180 (214)
T ss_dssp EEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTCBCTTS
T ss_pred ccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccCCcccC
Confidence 88888888888888888887777777777777777777777766666654
No 10
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=99.89 E-value=7.4e-24 Score=171.79 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=22.2
Q ss_pred CChHHHHHHHHhCCcccCCCCChHhHHhhhhccCccc
Q psy17757 34 TYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIES 70 (225)
Q Consensus 34 ~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~ 70 (225)
.--+.++..+..|+..+....+....+.++.|.+++.
T Consensus 21 m~~~e~l~~~~~~~~~f~~~~l~~~~l~~~~l~~~~~ 57 (257)
T 3du1_X 21 MNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADL 57 (257)
T ss_dssp CCHHHHHHHHHTTCCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred CCHHHHHHHHHhcccccccCCcCCCccCCCCCCCCCC
Confidence 4456788888777777665555554444444444443
No 11
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=99.89 E-value=5.3e-24 Score=172.62 Aligned_cols=30 Identities=50% Similarity=0.622 Sum_probs=11.3
Q ss_pred CcccCcccccCCCcCCccccCCcccccccc
Q psy17757 183 GADLENCDLSGSDLHEANLRGANLKDAALE 212 (225)
Q Consensus 183 ~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~ 212 (225)
+++|++++|++++|.+++|.+++|++++|.
T Consensus 207 ~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ 236 (257)
T 3du1_X 207 GASLQGADLSYANLESAILRKANLQGADLT 236 (257)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred CCccCCCcCCCCcCCCCcCCCCCCCCCCcc
Confidence 333333333333333333333333333333
No 12
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.89 E-value=1.3e-24 Score=172.05 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=15.3
Q ss_pred cchhhhhhhhhccCCCCCceeecccccCCcccccccccce
Q psy17757 91 LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNIN 130 (225)
Q Consensus 91 ~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~ 130 (225)
|.+++|.+++|.++.+.++.|.+|+|.+++|++++|.++.
T Consensus 69 f~~~~l~~a~f~~a~l~~a~f~~~~l~~a~f~~a~l~~~~ 108 (217)
T 2xty_A 69 FKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMI 108 (217)
T ss_dssp EESCBCTTCBCTTCBCTTEEEESCBCTTCBCTTCBCC---
T ss_pred cCCCCCCCCccCCCccCCCcccCCCcCCCCcCCCccccCc
Confidence 3333333333444444444444444444444444444433
No 13
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.89 E-value=7.8e-25 Score=171.10 Aligned_cols=131 Identities=13% Similarity=0.137 Sum_probs=105.7
Q ss_pred ccCCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccc------cccceeeeccccccccccceecCccccCCccc
Q psy17757 84 RSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLD------LRNINFKVRKGLTLPACSVNLKGANLEGSNMA 157 (225)
Q Consensus 84 ~~~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~------l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~ 157 (225)
..+.++.|.+|+|.+++|.++.+.++.|.+|+|.+++|+++. +.++.|.+|.+.++.+.+++|.+++|.+|+|.
T Consensus 49 ~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~ 128 (200)
T 2xt2_A 49 CKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIH 128 (200)
T ss_dssp CEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCBCTTCBCTTCBCTTCEEESCBCT
T ss_pred CEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCcccccEEccCccCCCEecCCEee
Confidence 344555566666666666666666677777777777777777 77777888888888888888899999999999
Q ss_pred CccccccccCceeecccccccccccCcccCcccccCCCcCCccccCCcccccccccc
Q psy17757 158 GVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM 214 (225)
Q Consensus 158 ~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~~~ 214 (225)
+++|.+|+|++++|.+|+|.+++|.+++|.+++|++++|.++++++++++++.|+..
T Consensus 129 ~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~~~~~~~~l~ga~~~~~ 185 (200)
T 2xt2_A 129 DANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLP 185 (200)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCCCCTTSSBCTTCEECTT
T ss_pred cccCCCCccccCCccCcccCCCCccCCccccCCcCCCCccccccccccccCcEECHH
Confidence 999999999999999999999999988888888888888888888888888888854
No 14
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.88 E-value=2e-23 Score=155.95 Aligned_cols=127 Identities=25% Similarity=0.250 Sum_probs=61.8
Q ss_pred hhcccCCCCCcchhhhhhhh---hccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCccc
Q psy17757 81 SRERSRDMMPLSRRDVINAL---ILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMA 157 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~---l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~ 157 (225)
...+.+.+++|++++|.++. +.++.+.++.|.+|+|.+++|++++|++++|.+|++.++.+.+++|.+++|.+++|.
T Consensus 15 ~~~~~l~~~dL~~~~l~~~~~~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~ 94 (150)
T 2o6w_A 15 CVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLE 94 (150)
T ss_dssp CTTCBCTTCBCTTCBCSSSCBCC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred cCCcccCCCCCCCCCcccCcccccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCC
Confidence 34555666777777776662 333444444444444444444444444444444444333333444444444444444
Q ss_pred CccccccccCceeecccccccccccCcccCcccccCCCcCCccccCCcccccccc
Q psy17757 158 GVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212 (225)
Q Consensus 158 ~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~ 212 (225)
++ .|.+|+|.+++|.+|+|.+++|.+|+|.+++|.+++|.+++|+++.++
T Consensus 95 ~a-----~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~a~l~ga~~~ 144 (150)
T 2o6w_A 95 NA-----ILIGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETD 144 (150)
T ss_dssp TC-----BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCC
T ss_pred CC-----EecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCCCCCcCCCEec
Confidence 44 444444444444444444445555555555555555555555555554
No 15
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.87 E-value=2e-23 Score=164.89 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=15.6
Q ss_pred hhhhccCCCCCceeecccccCCcccccccccceeeec
Q psy17757 98 NALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVR 134 (225)
Q Consensus 98 ~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~ 134 (225)
+++|.++.|.++.|.+|+|++++|++++|.++.|.+|
T Consensus 55 ~~~f~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f~~~ 91 (216)
T 3pss_A 55 SCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDC 91 (216)
T ss_dssp CCBCTTCBCTTCEEESCBCTTCBCTTCBCTTEEEESC
T ss_pred CcEeCCCCccCCCcCccCCCCCccCCCCcccCCcccC
Confidence 3344444444444444444444444444444444444
No 16
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.86 E-value=2.7e-22 Score=154.65 Aligned_cols=108 Identities=24% Similarity=0.320 Sum_probs=52.3
Q ss_pred CCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccccCcee-----ecccccccc
Q psy17757 105 ITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN-----LQNCDLRAA 179 (225)
Q Consensus 105 ~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~l~~~~-----f~~~~l~~a 179 (225)
.+.+++|.+|+|++++|++++|++++|.+|++.++.+.+++|.++.|.+|+|.+++|.+++|.++. |.+|+|++|
T Consensus 48 ~~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a 127 (184)
T 2f3l_A 48 TGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNA 127 (184)
T ss_dssp ----CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTC
T ss_pred cccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCC
Confidence 334455555555555555555555555555555544445555555554444444444444444444 444444444
Q ss_pred cccCcccCcccccCCCcCCccccCCcccccccc
Q psy17757 180 VLAGADLENCDLSGSDLHEANLRGANLKDAALE 212 (225)
Q Consensus 180 ~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~~~ 212 (225)
+|.+++|.+++|.+++|.+++|++++|++++++
T Consensus 128 ~l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~ 160 (184)
T 2f3l_A 128 VLTEAIMMRTKFDDAKITGADFSLAVLDVYEVD 160 (184)
T ss_dssp BCTTCEEEEEECTTCBCTTCBCTTCEECHHHHH
T ss_pred EeeCCEECCCEEeCCEecCCEecCCCCCcChHH
Confidence 444444444444455555555555555555544
No 17
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.84 E-value=4.8e-22 Score=153.27 Aligned_cols=115 Identities=21% Similarity=0.316 Sum_probs=86.7
Q ss_pred CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCccccCCcccCccccccc
Q psy17757 86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165 (225)
Q Consensus 86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~f~~~~l~~~~f~~a~ 165 (225)
..+++|++++|.+++|.++.|.++.|.+|+|.+++|++++|+++.|. +++|.+++|.+++|.+++|.+++
T Consensus 49 ~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~----------~a~l~~a~l~~a~L~~a~l~~a~ 118 (184)
T 2f3l_A 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFN----------GSALIGADLHGADLTNGLAYLTS 118 (184)
T ss_dssp ---CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEE----------SCBCTTCBCTTCBCTTCEEEEEE
T ss_pred ccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEe----------eeccCCCeEEEeecccceecCcE
Confidence 45677888888888888888888888888888888888888888888 66777777777777777777777
Q ss_pred cCceeecccccccccccCcccCcccccCCCcCCccccCCcccccc
Q psy17757 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA 210 (225)
Q Consensus 166 l~~~~f~~~~l~~a~f~~~~l~~~~f~~~~l~~a~~~~~~l~~~~ 210 (225)
|.+|+|.+++|.+|+|.+++|.+++|.+++|++|+|.+++++++-
T Consensus 119 f~~a~L~~a~l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~~~c 163 (184)
T 2f3l_A 119 FKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLC 163 (184)
T ss_dssp CTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEECHHHHHHHH
T ss_pred eCccEeCCCEeeCCEECCCEEeCCEecCCEecCCCCCcChHHHhh
Confidence 777777777777777777777777777777777777777776654
No 18
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.84 E-value=2.6e-21 Score=144.85 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=11.2
Q ss_pred CCCCceeecccccCCcccccccccceee
Q psy17757 105 ITAELRFQGVNLAGSDLSRLDLRNINFK 132 (225)
Q Consensus 105 ~~~~~~f~~~~l~~~~f~~~~l~~~~f~ 132 (225)
.|.+++|.+++|.+++|++++|.+++|.
T Consensus 17 ~l~~~~f~~~~l~~~~f~~~~l~~a~f~ 44 (152)
T 3n90_A 17 DLSGKDFSGQTLIRQDFKTSILRQANFK 44 (152)
T ss_dssp BCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred CccCCcCCCCCcCcCccCCCeeCCCEeC
Confidence 3333333334444444444444444444
No 19
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.83 E-value=9.6e-21 Score=167.75 Aligned_cols=47 Identities=30% Similarity=0.398 Sum_probs=18.2
Q ss_pred cCceeecccccccccccCcccCc--ccccCCCcCCccc-cCCcccccccc
Q psy17757 166 LKNANLQNCDLRAAVLAGADLEN--CDLSGSDLHEANL-RGANLKDAALE 212 (225)
Q Consensus 166 l~~~~f~~~~l~~a~f~~~~l~~--~~f~~~~l~~a~~-~~~~l~~~~~~ 212 (225)
|.+|+|.+|+|.+|+|.+|+|.+ |+|++++|.+|+| .+++|+++.++
T Consensus 103 L~~A~LsgAdL~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~ 152 (613)
T 3nb2_A 103 FENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILG 152 (613)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCC
T ss_pred eccCEecCCeecccEEeccEEecCccceeccccCCCeeCCCceecCCCcc
Confidence 33333333333333333333333 3333333333333 33333333333
No 20
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.82 E-value=6.1e-21 Score=142.85 Aligned_cols=44 Identities=7% Similarity=-0.017 Sum_probs=18.1
Q ss_pred CCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceee
Q psy17757 89 MPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFK 132 (225)
Q Consensus 89 ~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~ 132 (225)
..|.+++|.+++|.++.|.+++|.+++|.+++|.+++|.+++|.
T Consensus 6 ~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~ 49 (152)
T 3n90_A 6 GPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLL 49 (152)
T ss_dssp CCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred CcccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCC
Confidence 33444444444444444444444444444444444444444443
No 21
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.80 E-value=5e-20 Score=163.17 Aligned_cols=114 Identities=26% Similarity=0.228 Sum_probs=46.2
Q ss_pred CCCCCcchhhhhhhhhccCCCCCceeecccccCCcccccccccceeeeccccccccccceecCcc----ccCCcccCccc
Q psy17757 86 RDMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN----LEGSNMAGVNL 161 (225)
Q Consensus 86 ~~~~~~~~~~l~~~~l~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~~~~~~~~~a~~~~~~----f~~~~l~~~~f 161 (225)
+.+++|++++|.+++|.+++|.+++|.+|+|.+|+|++++|.+++|.+|.+.++.+.+|+|.+++ |.+|+|.+++|
T Consensus 34 fsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~LsgAdL 113 (613)
T 3nb2_A 34 YSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNL 113 (613)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCTTCBC
T ss_pred eCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEecCCee
Confidence 33344444444444444444444444444444444444444444444444444333344444444 33333333333
Q ss_pred cccccCceeecc--cccccccccCccc-CcccccCCCcCCc
Q psy17757 162 RVATLKNANLQN--CDLRAAVLAGADL-ENCDLSGSDLHEA 199 (225)
Q Consensus 162 ~~a~l~~~~f~~--~~l~~a~f~~~~l-~~~~f~~~~l~~a 199 (225)
.+|+|.+|.|.+ |+|.+|+|.+|+| .+++|++++|.++
T Consensus 114 ~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a 154 (613)
T 3nb2_A 114 KNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDV 154 (613)
T ss_dssp TTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCC
T ss_pred cccEEeccEEecCccceeccccCCCeeCCCceecCCCccCC
Confidence 333333333333 3333333333333 3333333333333
No 22
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.67 E-value=3.8e-17 Score=143.05 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=23.5
Q ss_pred CCCcchhhhhhhhhccC------CCCCceeecccccCCcccccccccceee
Q psy17757 88 MMPLSRRDVINALILTP------ITAELRFQGVNLAGSDLSRLDLRNINFK 132 (225)
Q Consensus 88 ~~~~~~~~l~~~~l~~~------~~~~~~f~~~~l~~~~f~~~~l~~~~f~ 132 (225)
+++|++++|.+++|.++ ...++++.+++|++|+|++++|++++|.
T Consensus 39 drDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~ 89 (627)
T 2qyu_A 39 DRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFD 89 (627)
T ss_dssp TTBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEE
T ss_pred CCcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccC
Confidence 34555555555555543 2334455555555555555555555555
No 23
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.64 E-value=1.1e-16 Score=140.29 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=31.5
Q ss_pred cceecCccccCCcccCccccccccCceeecccccccccccCcccC--cccccCCCcCCccc-cCCcccccccccc
Q psy17757 143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLE--NCDLSGSDLHEANL-RGANLKDAALELM 214 (225)
Q Consensus 143 ~a~~~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~~~l~--~~~f~~~~l~~a~~-~~~~l~~~~~~~~ 214 (225)
+++|.+++|.+|+|++|+|.+|.|.+|+|.+|+|++|+|.+|+|. +|+|.+|+|.+|+| .+|+|++|.+.++
T Consensus 80 ~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~a 154 (627)
T 2qyu_A 80 YSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEP 154 (627)
T ss_dssp TCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECCCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCC
T ss_pred CCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCCccccCCCCeeCCCCCCCCccccCccCCCCcCCCC
Confidence 333444444444444444444444444444444444444444443 34444444444444 2444444444433
No 24
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=99.58 E-value=6.1e-16 Score=108.55 Aligned_cols=75 Identities=48% Similarity=0.826 Sum_probs=67.3
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHHH
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIM 80 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~~ 80 (225)
||++||+++. .++...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++..+.+.+++.+.
T Consensus 31 ~L~~~~~~~~-----~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~i~ 105 (107)
T 3drz_A 31 FLYRLCQADP-----DLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIR 105 (107)
T ss_dssp HHHHHHTTCG-----GGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chhHHHhcCC-----CCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 5889998875 45667789999999999999999999999999999888888899999999999999999988773
No 25
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=99.54 E-value=1e-14 Score=112.04 Aligned_cols=79 Identities=47% Similarity=0.816 Sum_probs=68.0
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHHH
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIM 80 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~~ 80 (225)
||++||+++. .++...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++..+.+.+++.+.
T Consensus 37 ~L~~lfs~~~-----~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i~ 111 (202)
T 3drx_A 37 FLYRLCQADP-----DLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIR 111 (202)
T ss_dssp STHHHHSCCC-----C----BCTTCCEEECSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHhcCcc-----ccCcccCCCccEEecCChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 6899999875 45677889999999999999999999999999999888888899999999999999999998886
Q ss_pred hhcc
Q psy17757 81 SRER 84 (225)
Q Consensus 81 ~~~~ 84 (225)
..+.
T Consensus 112 ere~ 115 (202)
T 3drx_A 112 ERDS 115 (202)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 26
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=99.39 E-value=2.4e-13 Score=96.12 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=55.0
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccc
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESL 71 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l 71 (225)
||++||++. +...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++...
T Consensus 30 ~L~~l~~~~--------~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~fy~i~~~ 92 (115)
T 3kvt_A 30 RLSRLTEGM--------LNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSN 92 (115)
T ss_dssp TTTTCCTTS--------TTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGG
T ss_pred cHHHHhcCC--------CCCCCCCCcEEEecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHhCCChH
Confidence 577888753 244578999999999999999999999999999888888999999999999764
No 27
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=99.37 E-value=2.6e-13 Score=93.55 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=54.3
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHh-CCcccCCCCChHhHHhhhhccCcccch
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGVLEEARFFGIESLV 72 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~-g~i~l~~~~~~~~vl~ea~F~~~~~l~ 72 (225)
||++|+++.. .-.+++|+|||||||.+|++||+|+|. |+++++.......+++||+||++..+.
T Consensus 26 ~L~~~~~~~~--------~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 26 LLGNPQKRNR--------YYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENA 90 (100)
T ss_dssp TTTCHHHHGG--------GEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHHH
T ss_pred cccchhcccc--------ccCCCceeEEEcCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHHHHcCCCHHH
Confidence 5777876532 334578999999999999999999999 899998888889999999999997644
No 28
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=99.21 E-value=5.3e-12 Score=87.87 Aligned_cols=54 Identities=31% Similarity=0.444 Sum_probs=48.9
Q ss_pred CccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccch
Q psy17757 19 GDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72 (225)
Q Consensus 19 ~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~ 72 (225)
...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++..+.
T Consensus 34 ~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~fy~i~~l~ 87 (105)
T 1nn7_A 34 FYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEI 87 (105)
T ss_dssp GEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCC
T ss_pred cccCCCCcEEEeCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCHHH
Confidence 345789999999999999999999999999998888888999999999998764
No 29
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=99.19 E-value=6.9e-12 Score=89.74 Aligned_cols=54 Identities=28% Similarity=0.408 Sum_probs=49.3
Q ss_pred CccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccch
Q psy17757 19 GDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72 (225)
Q Consensus 19 ~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~ 72 (225)
...+++|+|||||||.+|++||+|+|.|++.++.......+++||+||++..+.
T Consensus 47 ~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~fy~i~~l~ 100 (124)
T 1s1g_A 47 FFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEI 100 (124)
T ss_dssp TBCSSSCSEEECSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHTTCCGGG
T ss_pred cccCCCCcEEEcCChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCChHH
Confidence 446789999999999999999999999999998888889999999999998763
No 30
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=99.14 E-value=1.2e-11 Score=90.28 Aligned_cols=54 Identities=28% Similarity=0.408 Sum_probs=49.2
Q ss_pred CccCCCCCEEEcCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccch
Q psy17757 19 GDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72 (225)
Q Consensus 19 ~~~~~~~~~fidrd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~ 72 (225)
...+++|+|||||||.+|++||+|+|.|+++++.......+++||+||++..+.
T Consensus 69 ~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~~p~~~~~~~l~eEa~fy~i~~l~ 122 (140)
T 2nz0_B 69 FFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEI 122 (140)
T ss_dssp SEETTTTEEEECSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHHHHHHHTCCGGG
T ss_pred cccCCCCeEEEeCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHHHHHHcCCChHH
Confidence 446789999999999999999999999999998888889999999999998763
No 31
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.63 E-value=6.9e-09 Score=91.50 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=53.2
Q ss_pred CHHHHhccCCCCCccCCCCccCCCCCEEEcCCCCChHHHHHHHHh-CCcccCCCCChHhHHhhhhccCcccch
Q psy17757 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGVLEEARFFGIESLV 72 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~F~~iL~~lr~-g~i~l~~~~~~~~vl~ea~F~~~~~l~ 72 (225)
||++|+++.. .-.+++++|||||||.+|++||+|+|. |++.++.......+.+|++||+++...
T Consensus 77 ~l~~~~~~~~--------~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 77 LLGDPKKRMR--------YFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEA 141 (514)
T ss_dssp TTTCHHHHGG--------GEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHHHHHTTCCHHH
T ss_pred cccccccCCc--------ccCCCCCCEEEcCChHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhcCCCHHH
Confidence 4566665432 344688999999999999999999999 999998888888999999999997643
No 32
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=92.63 E-value=0.14 Score=35.71 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=53.3
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE--cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI--DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi--drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||.++.. . ..+.+-+ +-+|..|+.+|+|+-.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus 55 F~~~f~~~~~-------e---~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~-~~~~~ll~~A~~~~i~~L~~~c~~~l 123 (127)
T 1r29_A 55 FYSIFTDQLK-------R---NLSVINLDPEINPEGFNILLDFMYTSRLNLRE-GNIMAVMATAMYLQMEHVVDTCRKFI 123 (127)
T ss_dssp HHHHHTSTTT-------T---TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCcc-------C---CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5788887751 1 4455666 56888999999999999998754 56788999999999999988887776
No 33
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=91.50 E-value=0.23 Score=33.89 Aligned_cols=64 Identities=19% Similarity=0.382 Sum_probs=49.5
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEEc---CCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLID---RSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEI 78 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fid---rd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~ 78 (225)
+++||+++. .+.+-|+ -+|..|+.+|+|+-.|.+.+.. .....++.-|++++++.+.+.+.+.
T Consensus 48 F~~~f~~~~-------------~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~-~~v~~ll~~A~~~~i~~L~~~C~~~ 113 (116)
T 2vpk_A 48 FGAIYRSTS-------------ENNVFLDQSQVKADGFQKLLEFIYTGTLNLDS-WNVKEIHQAADYLKVEEVVTKCKIK 113 (116)
T ss_dssp HHHHHTTCC-------------CSCEECCTTTCCHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCC-------------CCeEEeecCCCCHHHHHHHHHHHcCCCcccCH-HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 567887761 2334444 5888999999999999998754 4678899999999999888877665
Q ss_pred H
Q psy17757 79 I 79 (225)
Q Consensus 79 ~ 79 (225)
+
T Consensus 114 l 114 (116)
T 2vpk_A 114 M 114 (116)
T ss_dssp H
T ss_pred H
Confidence 5
No 34
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=89.96 E-value=0.23 Score=33.42 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=49.3
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++. .. .. ..+-+ +-+|..|+.+|.|+=.|.+.++. .....++.-|++++++.+.+.+.+.+
T Consensus 38 F~~~f~~~~--------~e-~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~-~~~~~ll~~A~~~~~~~L~~~c~~~l 105 (109)
T 2vkp_A 38 FYAMFYGDL--------AE-VK-SEIHIPDVEPAAFLILLKYMYSDEIDLEA-DTVLATLYAAKKYIVPALAKACVNFL 105 (109)
T ss_dssp HHHHHC---------------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCc--------cc-CC-CeEEeCCCCHHHHHHHHHHHcCCCccCCH-HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 567888764 11 11 44555 55888999999999999998765 45678999999999999888877766
No 35
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=88.29 E-value=0.58 Score=33.01 Aligned_cols=66 Identities=12% Similarity=0.290 Sum_probs=50.7
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE--cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI--DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi--drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++.. +...+-+ +-++..|+.+|+|+=.|.+.+.. .....++.-|+++++..+.+.+.+.+
T Consensus 62 F~~~f~~~~~-----------e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~-~~v~~ll~~A~~~~i~~L~~~C~~~l 129 (138)
T 2z8h_A 62 FHSRIVGQTD-----------AELTVTLPEEVTVKGFEPLIQFAYTAKLILSK-DNVDEVCRCVEFLSVHNIEESCFQFL 129 (138)
T ss_dssp HHHHHTTCCC-----------TTEEEECCTTSCHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHHTCGGGHHHHHHHT
T ss_pred HHHHHhcCCC-----------CCceEEeCCCCCHHHHHHHHHHhcCCCcccCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5678887751 1233444 34677899999999999998765 45788999999999999999888777
No 36
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=87.98 E-value=0.22 Score=34.77 Aligned_cols=64 Identities=17% Similarity=0.391 Sum_probs=46.6
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE--cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI--DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi--drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||++. ....+-| +-+|..|+.+|+|+-.|.+.+... ....++.-|+++++..+.+.+.+.+
T Consensus 59 F~~~f~~~-------------~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~-~~~~ll~~A~~~~i~~l~~~C~~~L 124 (129)
T 3ga1_A 59 FRDLFNNS-------------RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVG-DQDLLMYTAGFLQIQEIMEKGTEFF 124 (129)
T ss_dssp HHHHHHHC-------------CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTT-THHHHHHHHHHTTBTTSSCC-----
T ss_pred HHHHHcCC-------------CCCEEEECCCCCHHHHHHHHHHHhCCccccCHH-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677765 2345555 467889999999999999988553 4778999999999999888776655
No 37
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=87.81 E-value=0.34 Score=35.36 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=51.4
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++.. ....+.+-+ +-+|..|+.+|+|+-.|.+.+.. .....++.-|++++++.+...+.+.+
T Consensus 60 F~~~f~~~~~---------e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~-~~~~~ll~~A~~~~~~~l~~~c~~~l 128 (172)
T 3htm_A 60 FSAMFEHEME---------ESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD-KMADDLLAAADKYALERLKVMCEDAL 128 (172)
T ss_dssp HHHHHHSCCC---------GGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGG-GTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCcc---------ccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcH-HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 5788887641 112234444 56899999999999999987644 45678999999999999998888877
No 38
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=86.97 E-value=0.33 Score=34.71 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=47.2
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLME 77 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~ 77 (225)
+++||.++. .........+-+ +-+|..|+.+|.|+-.|.+.+.. .....++.-|++++++.+.+.+.+
T Consensus 73 F~~mf~~~~-------~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~-~~v~~ll~~A~~l~i~~L~~~C~~ 141 (144)
T 2ppi_A 73 IRTKLNYNP-------PKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE-DTIQDVVQAADLLLLTDLKTLCCE 141 (144)
T ss_dssp HHHHHHHCC------------CCCEEECCSSCHHHHHHHHHHHTTSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCC-------ccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCcHHHHHHHHH
Confidence 567888764 111122334444 44788899999999999988754 457889999999999887765543
No 39
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=86.01 E-value=0.32 Score=33.40 Aligned_cols=68 Identities=21% Similarity=0.389 Sum_probs=47.1
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++.. ......+-+ +-+|..|+.+|+|+=.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus 51 F~~~f~~~~~---------e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~-~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 51 FKKLFTSGAV---------VDQQNVYEIDFVSAEALTALMDFAYTATLTVST-ANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHC--------------CCSEEECCSSCHHHHHHHHHHHHHSCCCCCG-GGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCcc---------ccCCceEEeCCCCHHHHHHHHHHHcCCCCccCH-HHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 5678887641 112223333 34788899999999999988754 35678999999999998888776554
No 40
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=85.96 E-value=0.61 Score=36.56 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=47.7
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++.. ........+-| +-+|..|+.+|.|+-.|.+.+.. .....++.-|.+++++.+...+.+.+
T Consensus 57 F~~mf~~~~~-------~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~-~~v~~ll~~A~~l~i~~l~~~c~~~L 127 (256)
T 3hve_A 57 IRTKLNYNPP-------KDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE-DTIQDVVQAADLLLLTDLKTLCCEFL 127 (256)
T ss_dssp HHHTC------------------CEEECSSCCHHHHHHHHHHHHHSCCCCC--CCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCCC-------cccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccH-hHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 5678877641 11122233333 45788999999999999998755 56788999999999999999888877
No 41
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=84.26 E-value=0.78 Score=31.43 Aligned_cols=64 Identities=22% Similarity=0.369 Sum_probs=48.0
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++. .+.+-| +-+|..|+.+|+|+=.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus 50 F~~~f~~~~-------------~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~-~~v~~ll~~A~~~~i~~L~~~C~~~l 114 (119)
T 3b84_A 50 FQSLYGDGS-------------GGSVVLPAGFAEIFGLLLDFFYTGHLALTS-GNRDQVLLAARELRVPEAVELCQSFK 114 (119)
T ss_dssp HHHHHTTTT-------------CCCEEECGGGHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHCCCC-------------CCeEEeCCCCHHHHHHHHHHHcCCCCccCH-HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 567887763 122333 45688899999999999998765 45778999999999988887766544
No 42
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=81.88 E-value=0.75 Score=32.35 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=40.9
Q ss_pred cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 30 DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 30 drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+-++..|+.+|+|+=.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus 67 ~~~~~~f~~lL~fiYtg~~~i~~-~~v~~ll~~A~~l~i~~L~~~C~~~l 115 (135)
T 2yy9_A 67 AGFAEIFGLLLDFFYTGHLALTS-GNRDQVLLAAKELRVPEAVELCQSFQ 115 (135)
T ss_dssp GGGHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45678899999999999998755 45788999999999998888776655
No 43
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=80.60 E-value=0.65 Score=36.95 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=49.2
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE-------cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-------DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQ 74 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-------drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~ 74 (225)
+++||+++. .....+.+-| +-+|..|+.+|.|+-.|.+.+.. .....++.-|.+++++.+...
T Consensus 61 F~~mf~~~~---------~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~-~~v~~ll~~A~~l~i~~L~~~ 130 (279)
T 3i3n_A 61 FTPLLSGQF---------SESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVST-GSVHEVLELADRFLLIRLKEF 130 (279)
T ss_dssp SGGGCCC-----------------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEET-TTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCCC---------ccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCH-HHHHHHHHHHHHHCcHHHHHH
Confidence 467887764 1222344555 45788899999999999998865 457789999999999999988
Q ss_pred HHHHH
Q psy17757 75 LMEII 79 (225)
Q Consensus 75 l~~~~ 79 (225)
+.+.+
T Consensus 131 c~~~L 135 (279)
T 3i3n_A 131 CGEFL 135 (279)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88777
No 44
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=79.40 E-value=0.22 Score=35.34 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=48.1
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||+++.. ....+.+-+ +-+|..|+.+|+|+-.|.+.+.. .....++.-|++++++.+...+.+.+
T Consensus 51 F~~~f~~~~~---------e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~-~~~~~ll~~A~~~~~~~l~~~c~~~l 119 (145)
T 4eoz_A 51 FSAMFEHEME---------ESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD-KMADDLLAAADKYALERLKVMCEDAL 119 (145)
T ss_dssp HHHHHHSSSH---------HHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGG-GTHHHHHHHHHHTTCHHHHHHHHCC-
T ss_pred HHHHHcCCCc---------CCCCceEEecCCCHHHHHHHHHhhccCccCCcH-HHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 5678877641 111223333 56889999999999999887644 45678999999999988877666555
No 45
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=79.10 E-value=0.6 Score=32.28 Aligned_cols=64 Identities=13% Similarity=0.281 Sum_probs=46.1
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE--cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI--DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLME 77 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi--drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~ 77 (225)
+++||+++.. +.+.+-+ +-++..|+.+|+|+=.|.+.+.. .....++.-|++++++.+.+.+.+
T Consensus 55 F~~mf~~~~~-----------e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~-~~v~~ll~~A~~~~~~~L~~~C~~ 120 (124)
T 2ihc_A 55 FHSRIVGQAD-----------GELNITLPEEVTVKGFEPLIQFAYTAKLILSK-ENVDEVCKCVEFLSVHNIEESCFQ 120 (124)
T ss_dssp HHHHHTTC--------------CEEEECCTTSCHHHHHHHHHHHHHSEEEEET-TTHHHHHHHHHHHTBSSCCGGGGG
T ss_pred HHHHHcCCCC-----------CCceEeecCCcCHHHHHHHHHHhcCCCcccCH-HHHHHHHHHHHHHCCHHHHHHHHH
Confidence 5688887741 1233444 34677899999999999998765 457889999999999988775443
No 46
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=78.02 E-value=1.2 Score=30.45 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=40.8
Q ss_pred cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 30 DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 30 drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+-+|..|+.+|+|+=.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus 69 ~~~~~~f~~ll~~~Ytg~~~~~~-~~~~~ll~~A~~~~i~~L~~~c~~~l 117 (121)
T 1buo_A 69 FLSPKTFQQILEYAYTATLQAKA-EDLDDLLYAAEILEIEYLEEQCLKML 117 (121)
T ss_dssp SSCHHHHHHHHHHHHHSCCCCCG-GGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCCCcCCCH-HHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 35788999999999999988754 45678999999999998888777665
No 47
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=71.38 E-value=2.5 Score=28.91 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=44.6
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEEc--CCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLID--RSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVP 73 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fid--rd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~ 73 (225)
+++||++... +...+-+. -++..|+.+|+|+=.|.+.+.. .....++.-|+++++..+.+
T Consensus 58 F~~~f~~~~~-----------e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~-~~v~~ll~~A~~l~i~~L~~ 119 (125)
T 3ohu_A 58 FWQALVGQTK-----------NDLVVSLPEEVTARGFGPLLQFAYTAKLLLSR-ENIREVIRCAEFLRMHNLED 119 (125)
T ss_dssp HHHHHTTCCC-----------SSCEEECCTTCCHHHHHHHHHHHTTSEEEECT-TTHHHHHHHHHHHTBSSCTT
T ss_pred HHHHhcCCCC-----------CCcEEEeCCCCCHHHHHHHHHhHcCCceEECH-HHHHHHHHHHHHhCCHHHHH
Confidence 5678887641 13344442 5788899999999999998855 45678999999999887765
No 48
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=70.88 E-value=1.2 Score=35.90 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=49.5
Q ss_pred HHHHhccCCCCCccCCCCccCCCCCEEE-cCCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 2 LAKMFAEGSEGGYFMNPGDVDSTGAYLI-DRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~fi-drd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+++||.++. .....+.+-| |-+|..|+.+|+|+=.+.+.+.. .....++.-|++++++.+...+.+.+
T Consensus 200 F~~~f~~~~---------~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~-~~~~~ll~~A~~~~~~~l~~~c~~~l 268 (312)
T 3hqi_A 200 FSAMFEHEM---------EESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD-KMADDLLAAADKYALERLKVMCEDAL 268 (312)
T ss_dssp HHHHTTC--------------CCSEEEECSSCHHHHHHHHHHHHHSCCTTHH-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCc---------cccCCceEEecCCCHHHHHHHHHhhcCCCCCChH-HHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 567887764 1122234444 56899999999999999886533 34678999999999999998888887
No 49
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=61.34 E-value=4.8 Score=27.26 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=40.2
Q ss_pred CCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 32 SPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 32 d~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
+|..|+.+|+|+=.|.+.+.. .....++.-|++++++.+.+.+.+.+
T Consensus 70 ~~~~f~~ll~~~Ytg~~~i~~-~~~~~ll~~A~~l~i~~L~~~C~~~l 116 (119)
T 2q81_A 70 NAAGLGQVLEFMYTAKLSLSP-ENVDDVLAVATFLQMQDIITACHALK 116 (119)
T ss_dssp CHHHHHHHHHHHHHSCCCCCT-TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCccCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 577899999999999998765 45788999999999999888777665
No 50
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=55.76 E-value=2.2 Score=28.97 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=31.9
Q ss_pred cCCCCChHHHHHHHHhCCc-ccCCCCChHhHHhhhhccCcccch
Q psy17757 30 DRSPTYFEPILNYLRNGQL-VLDPNINPEGVLEEARFFGIESLV 72 (225)
Q Consensus 30 drd~~~F~~iL~~lr~g~i-~l~~~~~~~~vl~ea~F~~~~~l~ 72 (225)
+-+|..|+.+|+|+=.|.+ .+.. .....++.-|++++++.+.
T Consensus 72 ~~~~~~f~~~l~~~Ytg~~~~~~~-~~~~~ll~~A~~l~i~~L~ 114 (116)
T 3fkc_A 72 FIRAEIFAEILNYIYSSKIVRVRS-DLLDELIKSGQLLGVKFIA 114 (116)
T ss_dssp SSCHHHHHHHHHHHTTSCCCSCCH-HHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHHHhhcCCCcCCCCH-HHHHHHHHHHHHhCccccC
Confidence 4578889999999999988 3433 3456788889888886543
No 51
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=53.43 E-value=3.4 Score=28.29 Aligned_cols=48 Identities=27% Similarity=0.382 Sum_probs=39.9
Q ss_pred CCCCChHHHHHHHHhCCcccCCCCChHhHHhhhhccCcccchHHHHHHH
Q psy17757 31 RSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEII 79 (225)
Q Consensus 31 rd~~~F~~iL~~lr~g~i~l~~~~~~~~vl~ea~F~~~~~l~~~l~~~~ 79 (225)
-+|..|+.+|+|+=.|++.+.. .....++.-|+++++..+.+...+.+
T Consensus 68 v~~~~f~~ll~fiYtg~~~i~~-~~v~~ll~aA~~l~i~~l~~~C~~~~ 115 (119)
T 3m5b_A 68 ISPSTFAQLLNFVYGESVELQP-GELRPLQEAARALGVQSLEEACWRAR 115 (119)
T ss_dssp CCHHHHHHHHHHHTTCCEEECG-GGHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCcCcCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4677899999999999998855 45678999999999998888776655
No 52
>4eqa_C PA1845 protein, putative uncharacterized protein; type VI secretion, T6S, antitoxin-toxin complex, unknown FUN; 1.60A {Pseudomonas aeruginosa} PDB: 4fgi_B
Probab=23.41 E-value=42 Score=22.39 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=24.8
Q ss_pred HHHhccCCCCCccCCCCccCCCCCEEEcCCCCC
Q psy17757 3 AKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTY 35 (225)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~ 35 (225)
+.||+.+.|+.-. |..--+.+.|+-|||.--
T Consensus 28 rvmfsnedpnddn--pdafpeppvyladrdsgn 58 (153)
T 4eqa_C 28 RVMFSNEDPNDDN--PDAFPEPPVYLADRDSGN 58 (153)
T ss_dssp EEEEECCCTTCSS--CSEECSCCEEEEETTTCC
T ss_pred EEEeccCCCCCCC--cccCCCCCeEeeccCCCC
Confidence 4588888877755 788889999999998643
No 53
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor complex; 2.50A {Pseudomonas aeruginosa}
Probab=21.27 E-value=47 Score=22.98 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=24.8
Q ss_pred HHHhccCCCCCccCCCCccCCCCCEEEcCCCCC
Q psy17757 3 AKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTY 35 (225)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~fidrd~~~ 35 (225)
+.||+.+.|+.-. |..--|.+.|+-|||.--
T Consensus 67 rvmfsnedpnddn--pdafpeppvyladrdsgn 97 (192)
T 3vpj_E 67 RVMFSNEDPNDDN--PDAFPEPPVYLADRDSGN 97 (192)
T ss_dssp EEEEECCCSSCSS--CSEECSCCEEEEETTTSC
T ss_pred EEEeccCCCCCCC--cccCCCCCeeeeccCCCC
Confidence 4588888877755 888889999999998643
Done!