RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17757
(225 letters)
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 105 bits (262), Expect = 3e-28
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
L ++ + D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++ EGVL
Sbjct: 37 FLYRLCQADPD-----LDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 91
Query: 61 EEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVNLAGSD 120
EEA F+ I SL+ + + I RER + + V ++ + G
Sbjct: 92 EEAEFYNITSLIKLVKDKI--RERDSKTSQVPVKHVYR-VLQCQEEELTQMVSTMSDGWK 148
Query: 121 LSRLDLRNINFKV 133
+L ++
Sbjct: 149 FEQLVSIGSSYNY 161
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide
repeat protein, fluroquinolone resistance, DNA gyrase,
DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP:
b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Length = 186
Score = 99.8 bits (250), Expect = 2e-26
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
F ++ GS LR + V+ A L G+++ G+NL L+
Sbjct: 66 TFAQCSMLGSVFVACRLRPLTLD----------DVDFTLAVLGGNDLRGLNLTGCRLRET 115
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+L + DLR VL GADL +G+ L +A+LRGA +
Sbjct: 116 SLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWR 158
Score = 96.0 bits (240), Expect = 5e-25
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
++ G D DL ++ + + G NL S G R T +
Sbjct: 6 QWVDCEFTGRDFRDEDLSRLHTE---RAMF--SECDFSGVNLAESQHRGSAFRNCTFERT 60
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L + + G+ C L L + + A L L
Sbjct: 61 TLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLR 103
Score = 95.6 bits (239), Expect = 8e-25
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F GVNLA S RN F+ L + +M G L+
Sbjct: 37 FSGVNLAESQHRGSAFRNCTFE----------RTTLWHSTFAQCSMLGSVFVACRLRPLT 86
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L + D AVL G DL +L+G L E +L +L+ L
Sbjct: 87 LDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLR 128
Score = 90.6 bits (226), Expect = 7e-23
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 112 QGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANL 171
+ + D R+ + ++ + A + +GVNL + + +
Sbjct: 3 HMQQWVDCEFTGRDFRDEDLS----------RLHTERAMFSECDFSGVNLAESQHRGSAF 52
Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
+NC L + C + GS LR L D
Sbjct: 53 RNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDF 92
Score = 87.9 bits (219), Expect = 6e-22
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
R + + L D + L + + +NL G L +++ +LR L+ A
Sbjct: 81 RLRPLTLDDVDFTLAVLGGNDLR----------GLNLTGCRLRETSLVDTDLRKCVLRGA 130
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
+L A L ADL + A+L GA +
Sbjct: 131 DLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQA 172
Score = 86.0 bits (214), Expect = 4e-21
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 16/105 (15%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F L G+DL L+L + +L +L + G +L A A
Sbjct: 92 FTLAVLGGNDLRGLNLTGCRLR----------ETSLVDTDLRKCVLRGADLSGARTTGAR 141
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDL------HEANLRGANLKDA 209
L + DLR A + L G+ + A G L
Sbjct: 142 LDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG 186
Score = 70.6 bits (174), Expect = 2e-15
Identities = 8/65 (12%), Positives = 14/65 (21%)
Query: 148 GANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLK 207
G + R L + + +G +L GS L
Sbjct: 4 MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLW 63
Query: 208 DAALE 212
+
Sbjct: 64 HSTFA 68
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance,
handed quadrilateral beta-helix; 1.80A {Klebsiella
pneumoniae} PDB: 2xtw_A 2xtx_A
Length = 217
Score = 99.8 bits (250), Expect = 4e-26
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 10/103 (9%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
R QG + G+ + F CS + NL +N + V L L
Sbjct: 93 RAQGADFRGASFMNMITTRTWF----------CSAYITNTNLSYANFSKVVLEKCELWEN 142
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ A +G+DL + S D AN +L ++ L
Sbjct: 143 RWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELG 185
Score = 95.2 bits (238), Expect = 2e-24
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 10/108 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F + ++LS + + + L G+ + G + L
Sbjct: 114 FCSAYITNTNLSYANFSKVVLE----------KCELWENRWIGAQVLGATFSGSDLSGGE 163
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPL 218
D AA DL N +L D+ +L+G L + L++ L
Sbjct: 164 FSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERL 211
Score = 91.8 bits (229), Expect = 4e-23
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS---VNLKGANLEGSNMAGVNLRVATL 166
F + +G+DLS + F R+ C+ LK A + +++ + R ++
Sbjct: 27 TFFNCDFSGADLSGTEFIGCQFYDRESQK--GCNFSRAMLKDAIFKSCDLSMADFRNSSA 84
Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+++C + A GA N + + A + NL A
Sbjct: 85 LGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFS 130
Score = 90.2 bits (225), Expect = 1e-22
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 113 GVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLR-VATLKNANL 171
+ L G + R + T C + GA+L G+ G + K N
Sbjct: 5 ALALVGEKIDRNRFTGEKI---ENSTFFNC--DFSGADLSGTEFIGCQFYDRESQKGCNF 59
Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L+ A+ DL D S +R + A
Sbjct: 60 SRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFR 100
Score = 89.4 bits (223), Expect = 3e-22
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 7/107 (6%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS----VNLKGANLEGSNMAGVNLRVAT 165
+ + D S DL F G N A L+ + +L +A
Sbjct: 22 KIENSTFFNCDFSGADLSGTEF---IGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMAD 78
Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+N++ ++R GAD A + + L
Sbjct: 79 FRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLS 125
Score = 87.1 bits (217), Expect = 3e-21
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F L + DL +F+ + + G + G + R A+ N
Sbjct: 59 FSRAMLKDAIFKSCDLSMADFR----------NSSALGIEIRHCRAQGADFRGASFMNMI 108
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+A + +L + S L + L A +
Sbjct: 109 TTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVL 150
Score = 58.2 bits (142), Expect = 1e-10
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 158 GVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA 210
G ++ +A L + + + NCD SG+DL G D
Sbjct: 1 GSHMALA-LVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRE 52
Score = 34.0 bits (79), Expect = 0.023
Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGV--NLRVATL 166
++ N DL+ +L +++ + V+L+G L+ + + L +A +
Sbjct: 168 DWEAANFTHCDLTNSELGDLDIR----------GVDLQGVKLDNYQASLLMERLGIAVI 216
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed
quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A
{Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Length = 201
Score = 99.1 bits (248), Expect = 5e-26
Identities = 38/102 (37%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
L + L L NLK ANLE + ++ N+R A L AN
Sbjct: 97 LSDAILDNAILEGAILDEAVLN----------QANLKAANLEQAILSHANIREADLSEAN 146
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L+ DL A LA ADL +L + L ANL GANL+DA LE
Sbjct: 147 LEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLE 188
Score = 96.0 bits (240), Expect = 7e-25
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F V+L G+ L ++L L ANL+ +N++ +L ATL A+
Sbjct: 37 FSIVDLRGAVLENINLSGAILH----------GAMLDEANLQQANLSRADLSGATLNGAD 86
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L+ +L A L+ A L+N L G+ L EA L ANLK A LE
Sbjct: 87 LRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLE 128
Score = 92.5 bits (231), Expect = 2e-23
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
G+ GS + LR + + + V+L+GA LE N++G L A L AN
Sbjct: 11 SSGLVPRGSHMDVEKLRQLYAAGERDFS----IVDLRGAVLENINLSGAILHGAMLDEAN 66
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
LQ +L A L+GA L DL G++L +A+L A L +A LE
Sbjct: 67 LQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILE 108
Score = 90.6 bits (226), Expect = 9e-23
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 112 QGVNLAGSDLSRLDLRNINFKVRKGLTLPAC-SVNLKGANLEGSNMAGVNLRVATLKNAN 170
+ S L R + V K L A + +L G+ + +NL A L A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAM 61
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L +L+ A L+ ADL L+G+DL ANL A+L DA L+
Sbjct: 62 LDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILD 103
Score = 90.2 bits (225), Expect = 1e-22
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+L+G+ L+ DLR N +L A L+ + + G L A L AN
Sbjct: 72 LSRADLSGATLNGADLRGANLS----------KADLSDAILDNAILEGAILDEAVLNQAN 121
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L+ +L A+L+ A++ DLS ++L A+L GA+L A L
Sbjct: 122 LKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLH 163
Score = 90.2 bits (225), Expect = 1e-22
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
G L ++L + +L + L GA+L G+N++ +L A L NA
Sbjct: 57 LHGAMLDEANLQQANLSRADLS----------GATLNGADLRGANLSKADLSDAILDNAI 106
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L+ L AVL A+L+ +L + L AN+R A+L +A LE
Sbjct: 107 LEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLE 148
Score = 87.5 bits (218), Expect = 1e-21
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+G L + L++ +L+ N + L N++ A+L +N+ +L A L A+
Sbjct: 107 LEGAILDEAVLNQANLKAANLE---QAIL--SHANIREADLSEANLEAADLSGADLAIAD 161
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
L +L A L A+L +L ++L L G N A
Sbjct: 162 LHQANLHQAALERANLTGANLEDANLEGTILEGGNNNLA 200
Score = 71.7 bits (177), Expect = 9e-16
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 146 LKGANLEGSNMAGVNLRVATLKNANLQN------CDLRAAVLAGADLENCDLSGSDLHEA 199
+ ++ + +G+ R + + L+ D L GA LEN +LSG+ LH A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGA 60
Query: 200 NLRGANLKDAALE 212
L ANL+ A L
Sbjct: 61 MLDEANLQQANLS 73
Score = 40.1 bits (95), Expect = 2e-04
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165
+L ++L + L N NL+ ANLEG+ + G N +AT
Sbjct: 157 LAIADLHQANLHQAALERANLT----------GANLEDANLEGTILEGGNNNLAT 201
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five
residue fold, pentape repeat protein, structural
protein; 2.00A {Nostoc SP}
Length = 257
Score = 97.6 bits (244), Expect = 5e-25
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
FQ +NL +L+ L + +L+ L SN + LR A L A
Sbjct: 37 FQHINLQEIELTNASLTGADLS----------YADLRQTRLGKSNFSHTCLREADLSEAI 86
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L DL A L A L DL+G+ L + L ANL A+L
Sbjct: 87 LWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLC 128
Score = 94.9 bits (237), Expect = 7e-24
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+ +L G+ L + L N +L GANL +N++ L A L+ ++
Sbjct: 102 LREADLTGAKLVKTRLEEANLI----------KASLCGANLNSANLSRCLLFQADLRPSS 151
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
Q DL +L GADL DL + LH ANL GA L A
Sbjct: 152 NQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFG 193
Score = 94.5 bits (236), Expect = 1e-23
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+ + ++L+ I + +L GA+L +++ L + +
Sbjct: 27 LRHYAAGKRNFQHINLQEIEL----------TNASLTGADLSYADLRQTRLGKSNFSHTC 76
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L+ DL A+L G DL DL + L EA+L GA L LE
Sbjct: 77 LREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLE 118
Score = 89.5 bits (223), Expect = 6e-22
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+ L S+ S LR + L ++L A+L + + +L A L
Sbjct: 62 LRQTRLGKSNFSHTCLREADLS---EAIL--WGIDLSEADLYRAILREADLTGAKLVKTR 116
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
L+ +L A L GA+L + +LS L +A+LR ++ + L
Sbjct: 117 LEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDL 157
Score = 89.5 bits (223), Expect = 7e-22
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F L +DLS L I+ +L A L +++ G L L+ AN
Sbjct: 72 FSHTCLREADLSEAILWGIDLS----------EADLYRAILREADLTGAKLVKTRLEEAN 121
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L L A L A+L C L +DL ++ + +L L
Sbjct: 122 LIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLT 163
Score = 89.1 bits (222), Expect = 9e-22
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+L + L + + + + +L A L G +++ +L A L+ A+
Sbjct: 57 LSYADLRQTRLGKSNFSHTCLR----------EADLSEAILWGIDLSEADLYRAILREAD 106
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L L L A+L L G++L+ ANL L A L
Sbjct: 107 LTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLR 148
Score = 88.3 bits (220), Expect = 2e-21
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGV--------NLR 162
V L G+DLS DLR + NL GA L +N +L
Sbjct: 157 LGYVLLTGADLSYADLRAASLH----------HANLDGAKLCRANFGRTIQWGNLAADLS 206
Query: 163 VATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
A+L+ A+L +L +A+L A+L+ DL+G+ L +A L+GA + D ++
Sbjct: 207 GASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSI 255
Score = 86.8 bits (216), Expect = 6e-21
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+ +L+ + L +DL + L+ A+L G+ + L A L A+
Sbjct: 77 LREADLSEAILWGIDLSEADLY----------RAILREADLTGAKLVKTRLEEANLIKAS 126
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L +L +A L+ L DL S +L L A L
Sbjct: 127 LCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLS 168
Score = 86.8 bits (216), Expect = 7e-21
Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 112 QGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANL 171
+ S L R + V L+ N +NL+ L NA+L
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMNV---------GEILRHYAAGKRNFQHINLQEIELTNASL 52
Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
DL A L L + S + L EA+L A L L
Sbjct: 53 TGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDL 92
Score = 83.3 bits (207), Expect = 1e-19
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKN-- 168
Q +L L+ DL + + + +L ANL+G+ + N
Sbjct: 152 NQRTDLGYVLLTGADLSYADLR----------AASLHHANLDGAKLCRANFGRTIQWGNL 201
Query: 169 -ANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
A+L L+ A L+ A+LE+ L ++L A+L GA LKDA L+
Sbjct: 202 AADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELK 246
Score = 81.8 bits (203), Expect = 5e-19
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
+L G++L+ +L +L+ ++ + +++ V L A L A
Sbjct: 121 NLIKASLCGANLNSANLSRCLL----------FQADLRPSSNQRTDLGYVLLTGADLSYA 170
Query: 170 NLQNCDLRAAVLAGADLENCDLSGS--------DLHEANLRGANLKDAALE 212
+L+ L A L GA L + + DL A+L+GA+L A LE
Sbjct: 171 DLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYANLE 221
Score = 80.6 bits (200), Expect = 1e-18
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
L ++L + L N S NL L +++ + + L
Sbjct: 112 LVKTRLEEANLIKASLCGANLN----------SANLSRCLLFQADLRPSSNQRTDLGYVL 161
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
L DL A L A L + +L G+ L AN
Sbjct: 162 LTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGN 200
Score = 77.9 bits (193), Expect = 1e-17
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 145 NLKGANLEGSNM-AGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
+ G GS+M G LR N Q+ +L+ L A L DLS +DL + L
Sbjct: 10 HSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGK 69
Query: 204 ANLKDAALE 212
+N L
Sbjct: 70 SNFSHTCLR 78
Score = 72.1 bits (178), Expect = 2e-15
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 146 LKGANLEGSNMAGVNLR------VATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEA 199
+ ++ + +G+ R L++ + + L +L N L+G+DL A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYA 60
Query: 200 NLRGANLKDAAL 211
+LR L +
Sbjct: 61 DLRQTRLGKSNF 72
Score = 49.8 bits (120), Expect = 1e-07
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 166 LKNANLQNCDLRAAVLAGADLE-NCDLSGSDLHEANLRGANLKDAALE 212
+ +++ + V G+ + L + N + NL++ L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNVGEILRHYAAGKRNFQHINLQEIELT 48
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P;
2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Length = 627
Score = 100 bits (251), Expect = 7e-25
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 4/107 (3%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL 166
+ + + A D S D RNI F + + G ++G N + + +
Sbjct: 28 RQKAGETLTAADRDFSNADFRNITFSKILPPSF----MERDGDIIKGFNFSNSKFTYSDI 83
Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
+ + C + L+ N S SD++E L+ +
Sbjct: 84 SHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSF 130
Score = 82.5 bits (203), Expect = 2e-18
Identities = 15/122 (12%), Positives = 30/122 (24%), Gaps = 19/122 (15%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS-----------VNLKGANLEGSN 155
L + + +D + I ++ + +
Sbjct: 33 ETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECR 92
Query: 156 MAGVNLRVATLKNANLQNCDLRAAVLAGA-------DLENCDLSGSDL-HEANLRGANLK 207
L N N D+ L + + L + + H+ANL G L
Sbjct: 93 FTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNTLIRHKANLSGVILN 152
Query: 208 DA 209
+
Sbjct: 153 EP 154
Score = 62.8 bits (152), Expect = 8e-12
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 11/81 (13%)
Query: 143 SVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLR-----------AAVLAGADLENCDL 191
+ L A L + NA+ +N ++ G + N
Sbjct: 19 AKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKF 78
Query: 192 SGSDLHEANLRGANLKDAALE 212
+ SD+ + + L
Sbjct: 79 TYSDISHLHFDECRFTYSTLS 99
Score = 61.7 bits (149), Expect = 3e-11
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 4/103 (3%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNM-AGVNLRVATLKNA 169
V + + S D+ + + + L+ + + NL L
Sbjct: 98 LSDVVCSNTKFSNSDMNEVFLQ---YSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEP 154
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ + + L + L L N L
Sbjct: 155 DNSSPPSVSGGGNFIRLGDIWLQMPLLWTENAVDGFLNHEHNN 197
Score = 38.9 bits (90), Expect = 8e-04
Identities = 7/57 (12%), Positives = 12/57 (21%)
Query: 154 SNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA 210
+ A + L + LR + D S +D
Sbjct: 5 HHHATSSPSSPADWAKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFM 61
Score = 36.2 bits (83), Expect = 0.007
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 160 NLRVATLKNANLQNC--DLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
+ AT ++ + L AVL E + D A+ R
Sbjct: 4 HHHHATSSPSSPADWAKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILP 57
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein;
beta helix, unknown function; 2.40A {Cyanothece}
Length = 150
Score = 94.0 bits (235), Expect = 1e-24
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F DL+R +L N N L S+ L+ A L +N++ +L A L AN
Sbjct: 48 FGMDKAKPVDLTRANLSNANLY---QSDL--SSIILENAILVETNLSETDLENAILIGAN 102
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
LQ +L A L GA+LEN +L G+ L NL +LK +
Sbjct: 103 LQGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETD 144
Score = 91.3 bits (228), Expect = 1e-23
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 115 NLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNC 174
G +L ++L NF ++ + S L V+L A L NANL
Sbjct: 14 ECVGCNLEGVNLPRENFGLKYRIPR--SSSPLVTTPFGMDKAKPVDLTRANLSNANLYQS 71
Query: 175 DLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
DL + +L A L +LS +DL A L GANL+ A LE
Sbjct: 72 DLSSIILENAILVETNLSETDLENAILIGANLQGANLE 109
Score = 90.9 bits (227), Expect = 2e-23
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
G NL G +L R + R L + + ++ NL A L ++
Sbjct: 15 CVGCNLEGVNLPRENFGLKYRIPRSSSPL--VTTPFGMDKAKPVDLTRANLSNANLYQSD 72
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L + L A+L +L DL + L ANL+GANL++A L+
Sbjct: 73 LSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQ 114
Score = 84.4 bits (210), Expect = 5e-21
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
NL+ ++L + DL +I + L NL +LE + + G NL+ A L+NAN
Sbjct: 58 LTRANLSNANLYQSDLSSIILE---NAIL--VETNLSETDLENAILIGANLQGANLENAN 112
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKD 208
LQ +L A L GA L +L + L + D
Sbjct: 113 LQGANLENANLRGAILTGVNLEETHLKGIETDKNTVWD 150
Score = 79.8 bits (198), Expect = 3e-19
Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 118 GSDLSRLDLRNINFKVRKGLTLPACS-VNLKGANLEGSNMAG---VNLRVATLKNANLQN 173
++L RL+L C NL+G NL N + + L
Sbjct: 3 TNNLYRLELER------------ECVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGM 50
Query: 174 CDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ L A+L N +L SDL L A L + L
Sbjct: 51 DKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLS 89
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral
beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Length = 200
Score = 94.1 bits (235), Expect = 4e-24
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
RF + G + + ++ + +++ + L S G+ L +
Sbjct: 75 RFVDCKMLGVNWTSAQWPSVKMEG---------ALSFERCILNDSLFYGLYLAGVKMVEC 125
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ + + A AD DL GS H L GA+ DA
Sbjct: 126 RIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNY 168
Score = 92.2 bits (230), Expect = 2e-23
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 10/100 (10%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+ G + D S L +I F+ + N + + R + N
Sbjct: 11 YCGESFVSEDRSGQSLESIRFE----------DCTFRQCNFTEAELNRCKFRECEFVDCN 60
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA 210
L + +C + G + A ++ A
Sbjct: 61 LSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGAL 100
Score = 86.4 bits (215), Expect = 3e-21
Identities = 12/100 (12%), Positives = 23/100 (23%), Gaps = 5/100 (5%)
Query: 113 GVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQ 172
L D + + G +L S+ + N L +
Sbjct: 3 AKTLESKDYCGESFVSEDRS---GQSLE--SIRFEDCTFRQCNFTEAELNRCKFRECEFV 57
Query: 173 NCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+C+L + + N A +E
Sbjct: 58 DCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKME 97
Score = 83.7 bits (208), Expect = 3e-20
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
F+ N ++L+R R F NL ++ ++ V +
Sbjct: 35 TFRQCNFTEAELNRCKFRECEFV----------DCNLSLISIPQTSFMEVRFVDCKMLGV 84
Query: 170 NLQNCDLRAAVLAGA-DLENCDLSGSDLHEANLRGANLKDAALE 212
N + + + GA E C L+ S + L G + + +
Sbjct: 85 NWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIH 128
Score = 82.9 bits (206), Expect = 5e-20
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 15/96 (15%)
Query: 116 LAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCD 175
+ L D +F + G ++ + T + N +
Sbjct: 1 MPAKTLESKDYCGESFV---------------SEDRSGQSLESIRFEDCTFRQCNFTEAE 45
Query: 176 LRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
L + +C+LS + + + D +
Sbjct: 46 LNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKM 81
Score = 81.8 bits (203), Expect = 1e-19
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 109 LRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKN 168
L F+ L S L L + + AN ++ + + LK
Sbjct: 100 LSFERCILNDSLFYGLYLAGVKMV----------ECRIHDANFTEADCEDADFTQSDLKG 149
Query: 169 ANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
+ N L A A + D+ +D+ A L
Sbjct: 150 STFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAASLLNSL 194
Score = 69.1 bits (170), Expect = 1e-14
Identities = 8/67 (11%), Positives = 19/67 (28%)
Query: 146 LKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGAN 205
+ LE + G + +L++ + +L+ E N
Sbjct: 1 MPAKTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCN 60
Query: 206 LKDAALE 212
L ++
Sbjct: 61 LSLISIP 67
Score = 68.3 bits (168), Expect = 2e-14
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 20/96 (20%)
Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLK 167
L GV + + N A+ E ++ +L+ +T
Sbjct: 114 GLYLAGVKMVECRIHD--------------------ANFTEADCEDADFTQSDLKGSTFH 153
Query: 168 NANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRG 203
N L AV D+ + D+ +
Sbjct: 154 NTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAAS 189
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E
ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia
coli} PDB: 3naw_A* 3sqv_A
Length = 613
Score = 97.7 bits (243), Expect = 1e-23
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 115 NLAGSDLSRLDLRNINFKVRKGLTLPAC--SVNLKGANLEGSNMAGVNLRVATLKNANLQ 172
+ + LS+ +L + T +N G +L G ++ G+NL A L
Sbjct: 1 SQGRACLSKAELTADLIWLSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLD 60
Query: 173 NCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ DLR + L+ A LENC S L+E N ANL + +
Sbjct: 61 DTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIR 100
Score = 95.4 bits (237), Expect = 6e-23
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL 166
EL + G +L+G L L+L ++NF L +L S+++ L +
Sbjct: 30 EELNYSGCDLSGLSLVGLNLSSVNFS----------GAVLDDTDLRMSDLSQAVLENCSF 79
Query: 167 KNANLQNCDLRAAVLAGAD----LENCDLSGSDLHEANLRGANLKDAALEL 213
KN+ L C+ A L+ EN + S S+L A+ +G++ L
Sbjct: 80 KNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASFKGSSYIQYPPIL 130
Score = 86.1 bits (213), Expect = 1e-19
Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL 166
+ L+ + ++L G NL N +G L L
Sbjct: 15 DLIWLSANRTGEESAEELNYSGCDLS----------GLSLVGLNLSSVNFSGAVLDDTDL 64
Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLR----GANLKDAALE 212
+ ++L L + L C+ ++L +R +N ++ L+
Sbjct: 65 RMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLK 114
Score = 76.9 bits (189), Expect = 2e-16
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVA--TLKN 168
F+ L + +L N R + N +NL+ ++ G + L
Sbjct: 79 FKNSILNECNFCYANLSNCII--RALFE----NSNFSNSNLKNASFKGSSYIQYPPILNE 132
Query: 169 ANLQNCDL------------RAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
A+L + L +L G + ++++ L
Sbjct: 133 ADLTGAIIIPGMVLSGAILGDVKELFSEKSNTINLGGCYIDLSDIQENILSVL 185
Score = 73.8 bits (181), Expect = 2e-15
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 107 AELR--FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNM-AGVNLRV 163
+R F+ N + S+L + + L A+L G+ + G+ L
Sbjct: 97 CIIRALFENSNFSNSNLKNASFKGSS--------YIQYPPILNEADLTGAIIIPGMVLSG 148
Query: 164 ATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
A L + +L + +L C + SD+ E L +
Sbjct: 149 AILGDVK----ELFSEKSNTINLGGCYIDLSDIQENILSVLDN 187
Score = 58.0 bits (140), Expect = 3e-10
Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 111 FQGVNLAGSDLSR-LDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
G+ L+G+ L +L + ++NL G ++ S++ L V
Sbjct: 141 IPGMVLSGAILGDVKELFSEKSN----------TINLGGCYIDLSDIQENILSVLDN-YT 189
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
L + + + ++ + L +
Sbjct: 190 KSNKSILLTMNTSDDKYNHDKVRAAEELIKKISLDELAAFRPYV 233
Score = 44.2 bits (104), Expect = 2e-05
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 17/111 (15%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
+ +NL G + D++ SV S + +N +
Sbjct: 161 KSNTINLGGCYIDLSDIQENIL-----------SVLDNYTKSNKSILLTMNTSDDKYNHD 209
Query: 170 NLQNCDLRAAVLAGADLENC------DLSGSDLHEANLRGANLKDAALELM 214
++ + ++ +L L+ S L AN++ +
Sbjct: 210 KVRAAEELIKKISLDELAAFRPYVKMSLADSFSIHPYLNNANIQQWLEPIC 260
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP}
SCOP: b.80.8.1 PDB: 2g0y_A
Length = 184
Score = 92.2 bits (230), Expect = 2e-23
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS-VNLKGANLEGSNMAGVNLRVAT 165
R G+ + R + + + A + V A+ E + G + +
Sbjct: 11 LVPRGSGMKETAAKFERQHMDSPDL--GTDDDDKAMAMVTGSSASYEDVKLIGEDFSGKS 68
Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L A N DL + + ADL +GS L A+L GA+L +
Sbjct: 69 LTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAY 115
Score = 91.8 bits (229), Expect = 2e-23
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
++ V L G D S L F + +L +N +++ G + L A+
Sbjct: 54 YEDVKLIGEDFSGKSLTYAQFT----------NADLTDSNFSEADLRGAVFNGSALIGAD 103
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L DL + + DL+ + L EA + DA +
Sbjct: 104 LHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKIT 145
Score = 90.3 bits (225), Expect = 8e-23
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F G +L + + DL + NF +L+GA GS + G +L A L N
Sbjct: 64 FSGKSLTYAQFTNADLTDSNFS----------EADLRGAVFNGSALIGADLHGADLTNGL 113
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ A L A L + + +A + GA+ A L+
Sbjct: 114 AYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLD 155
Score = 86.8 bits (216), Expect = 1e-21
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F +L S+ S DLR F L GA+L G+++ + + K A+
Sbjct: 74 FTNADLTDSNFSEADLRGAVFN----------GSALIGADLHGADLTNGLAYLTSFKGAD 123
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
L N L A++ ++ ++G+D A L +
Sbjct: 124 LTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRA 166
Score = 67.9 bits (167), Expect = 2e-14
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 145 NLKGANLEGS--NMAGVNLRVATLKNANL----QNCDLRAAVLAGADLENCDLSGSDLHE 198
+ G GS + + +L + + + A E+ L G D
Sbjct: 7 HSSGLVPRGSGMKETAAKFERQHMDSPDLGTDDDDKAMAMVTGSSASYEDVKLIGEDFSG 66
Query: 199 ANLRGANLKDAAL 211
+L A +A L
Sbjct: 67 KSLTYAQFTNADL 79
Score = 36.0 bits (84), Expect = 0.004
Identities = 3/49 (6%), Positives = 11/49 (22%), Gaps = 8/49 (16%)
Query: 168 NANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLT 216
+ + R +G ++ +L + +
Sbjct: 5 HHHSSGLVPR---GSGMKETAAKFER-----QHMDSPDLGTDDDDKAMA 45
Score = 34.8 bits (81), Expect = 0.010
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 8/52 (15%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLR 162
F + G+D S L + G N + +LR
Sbjct: 139 FDDAKITGADFSLAVLDVYE--------VDKLCDRADGVNPKTGVSTRESLR 182
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 89.7 bits (223), Expect = 2e-23
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
L ++ + D D TGAYLIDR PTYF P+LNYLR+G+LV++ ++ EGVL
Sbjct: 31 FLYRLCQADPD-----LDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85
Query: 61 EEARFFGIESLVPQLMEIIMSR 82
EEA F+ I SL+ + + I R
Sbjct: 86 EEAEFYNITSLIKLVKDKIRER 107
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic;
right-handed quadrilateral beta helix; 1.70A
{Arabidopsis thaliana}
Length = 152
Score = 89.1 bits (222), Expect = 9e-23
Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 115 NLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNC 174
G + R + + G L + LR A K A L
Sbjct: 2 FKGGGPYGQGVTRGQDL----------SGKDFSGQTLIRQDFKTSILRQANFKGAKLLGA 51
Query: 175 DLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
A L GADL DL G+D AN+ NL +A LE
Sbjct: 52 SFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 89
Score = 88.7 bits (221), Expect = 1e-22
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 113 GVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQ 172
G DL +F L + + S + N + A L A+
Sbjct: 5 GGPYGQGVTRGQDLSGKDF----------SGQTLIRQDFKTSILRQANFKGAKLLGASFF 54
Query: 173 NCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
+ DL A L+ ADL D S +++ + NL ANL+ A +
Sbjct: 55 DADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATM 93
Score = 86.8 bits (216), Expect = 7e-22
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+ G DLS D + K + L +N G L A+ +A+
Sbjct: 8 YGQGVTRGQDLSGKDFSGQTLI----------RQDFKTSILRQANFKGAKLLGASFFDAD 57
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAA 210
L DL A L GAD +++ +L ANL GA +
Sbjct: 58 LTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNT 97
Score = 86.0 bits (214), Expect = 2e-21
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F G L D LR NFK G L + A+L G++++ +LR A AN
Sbjct: 23 FSGQTLIRQDFKTSILRQANFK---GAKL--LGASFFDADLTGADLSEADLRGADFSLAN 77
Query: 171 LQNCDLRAAVLAGADL-ENCDLSGSDLHEANLRGANLKDAALELMLTPL 218
+ +L A L GA + N GS++ A+ L+D +
Sbjct: 78 VTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVA 126
Score = 71.0 bits (175), Expect = 8e-16
Identities = 13/64 (20%), Positives = 19/64 (29%)
Query: 149 ANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKD 208
A G R L + L + L + G+ L A+ A+L
Sbjct: 1 AFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTG 60
Query: 209 AALE 212
A L
Sbjct: 61 ADLS 64
Score = 67.9 bits (167), Expect = 9e-15
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT-LKNA 169
F +L G+DLS DLR +F N+ NL +N+ G + T K +
Sbjct: 53 FFDADLTGADLSEADLRGADF----------SLANVTKVNLTNANLEGATMMGNTSFKGS 102
Query: 170 NLQNCDLRAAVLAGADLENC--DLSGSDLHEANLRGANL 206
N+ D L G + N L
Sbjct: 103 NITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTL 141
Score = 37.8 bits (89), Expect = 6e-04
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
F+G N+ G+D + + LR+ G N N L L++
Sbjct: 98 SFKGSNITGADFTDVPLRDDQRV--------YLCKVADGVNATTGNATRDTLL-CNLEHH 148
Query: 170 NLQN 173
+ +
Sbjct: 149 HHHH 152
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras
cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB:
3psz_A
Length = 216
Score = 88.3 bits (219), Expect = 9e-22
Identities = 22/106 (20%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATL- 166
+ F+GV DL + F N +L +
Sbjct: 4 DXCFEGVRFEQQDLEGEQFQGCRFI----------GCNFSWLDLAECRFVDCSFYDRESE 53
Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
++ LQ CDLR A DL D S S LR
Sbjct: 54 QSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFS 99
Score = 87.1 bits (216), Expect = 3e-21
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 1/107 (0%)
Query: 107 AELRFQGVNLAGSDLSRLDLRNINF-KVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165
+FQG G + S LDL F S L+G +L ++ +L +A
Sbjct: 18 EGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMAD 77
Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ +LR G + + + A+L
Sbjct: 78 CSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFS 124
Score = 76.4 bits (188), Expect = 2e-17
Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 21/103 (20%)
Query: 116 LAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCD 175
+ + +L+G +G G N L +C
Sbjct: 2 IXDXCFEGVRFEQ---------------QDLEGEQFQGCRFIGCNFSWLDLAECRFVDCS 46
Query: 176 L------RAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
++ +L G DL DL A+ + L
Sbjct: 47 FYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELR 89
Score = 72.9 bits (179), Expect = 6e-16
Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 10/103 (9%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
QG +L + R DL + G L G+N A+ N
Sbjct: 57 LLQGCDLREASFLRCDLTMADCS----------RSQCLGLELRDCQALGINFSRASFANQ 106
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
A L G + + G L + L G + A L
Sbjct: 107 ITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLF 149
Score = 69.0 bits (169), Expect = 1e-14
Identities = 22/102 (21%), Positives = 34/102 (33%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
+ G + SR N N AN EG + L + AN
Sbjct: 88 LRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGAN 147
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
L L + L+G++ D + +L +LR +L L
Sbjct: 148 LFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLR 189
Score = 68.3 bits (167), Expect = 3e-14
Identities = 23/103 (22%), Positives = 41/103 (39%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
+ G+N + + + F N +G LE ++G + A L A
Sbjct: 92 QALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGA 151
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+L DL + D + +L G DL + +L G +L+ L+
Sbjct: 152 SLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLD 194
Score = 66.7 bits (163), Expect = 8e-14
Identities = 27/109 (24%), Positives = 39/109 (35%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
F S L NF L G +G+N+ G +L + L +
Sbjct: 102 SFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGS 161
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPL 218
D + L G DL CDL G DL NL G + + + +L +
Sbjct: 162 EFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQI 210
Score = 65.9 bits (161), Expect = 2e-13
Identities = 22/101 (21%), Positives = 34/101 (33%)
Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
F + A + L+ L G+ G NL A+L ++
Sbjct: 98 FSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSD 157
Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
L + A +L+ CDL DL +LR NL +
Sbjct: 158 LSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQI 198
Score = 63.6 bits (155), Expect = 1e-12
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
F +L G++ S + + + NL GA+L GS+++G +
Sbjct: 112 YFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASV 171
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
NLQ CDLR L G DL +L G ++E + A L+ L
Sbjct: 172 NLQGCDLRQCDLPGLDLRRVNLDGVQINED-QQQALLEQIGL 212
Score = 63.3 bits (154), Expect = 2e-12
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 1/116 (0%)
Query: 91 LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN 150
SR N + + E G N + ++ L + +L G++
Sbjct: 98 FSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSD 157
Query: 151 LEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
L GS ++ L+ +L+ CDL L +L+ ++ D +A L L
Sbjct: 158 LSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINE-DQQQALLEQIGL 212
Score = 40.1 bits (94), Expect = 2e-04
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Query: 91 LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN 150
+ + G +LAGSDLS + I++ +L G +
Sbjct: 128 FEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLD 187
Query: 151 LEGSNMAGVNLRVATLKNANLQNCDLR 177
L N+ GV + + A L+ L
Sbjct: 188 LRRVNLDGVQIN-EDQQQALLEQIGLI 213
Score = 39.4 bits (92), Expect = 3e-04
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 180 VLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
++ E DL +G
Sbjct: 1 MIXDXCFEGVRFEQQDLEGEQFQGCRFIGCNF 32
Score = 30.1 bits (68), Expect = 0.43
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 91 LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN 150
LS A + A G D + ++L+ + + L VNL G
Sbjct: 138 LSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQ 197
Query: 151 LE----GSNMAGVNLRV 163
+ + + + L V
Sbjct: 198 INEDQQQALLEQIGLIV 214
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase
inhibitor, cyclic pentylation, chemic modification; HET:
LP6; 1.60A {Enterococcus faecalis}
Length = 214
Score = 87.2 bits (216), Expect = 3e-21
Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 10/105 (9%)
Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLK 167
E + DL ++RN+ F+ +L A + +
Sbjct: 29 EAILENHLYQQIDLPNQEVRNLVFR----------DAVFDHLSLANGQFASFDCSNVRFE 78
Query: 168 NANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ N + + C+L+G++ ++ L +D +
Sbjct: 79 ACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXAD 123
Score = 74.9 bits (184), Expect = 1e-16
Identities = 20/134 (14%), Positives = 39/134 (29%), Gaps = 15/134 (11%)
Query: 87 DMMPLSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS--- 143
+ L+ + + IL +Q ++L ++ L R+ F L+L
Sbjct: 17 QLPLLTNCQLEDEAILE----NHLYQQIDLPNQEVRNLVFRDAVFD---HLSLANGQFAS 69
Query: 144 -----VNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHE 198
V + + + T NL + + L E+C +
Sbjct: 70 FDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRF 129
Query: 199 ANLRGANLKDAALE 212
AN + L
Sbjct: 130 ANFNLVHFNQTRLV 143
Score = 68.8 bits (168), Expect = 2e-14
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 6/106 (5%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACS---VNLKGANLEGSNMAGVNLRVATL 166
F ++LA + D N+ F+ + N+ G N + L
Sbjct: 56 VFDHLSLANGQFASFDCSNVRFE---ACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYL 112
Query: 167 KNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ ++C A A+ + + L E+ LE
Sbjct: 113 XDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLE 158
Score = 67.6 bits (165), Expect = 5e-14
Identities = 16/102 (15%), Positives = 28/102 (27%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
F NL G++ + L + F+ N + + + T
Sbjct: 96 TFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXL 155
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAAL 211
L+ CDL + L D S + L +
Sbjct: 156 LLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLXV 197
Score = 65.3 bits (159), Expect = 3e-13
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 10/103 (9%)
Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
RF+ + + + + F NL G N S + A
Sbjct: 76 RFEACDFSNVEWLSGSFHRVTFL----------RCNLTGTNFADSYLXDCLFEDCXADYA 125
Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
+ + + L + L +L ++
Sbjct: 126 SFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWL 168
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 74.5 bits (183), Expect = 3e-17
Identities = 17/67 (25%), Positives = 27/67 (40%)
Query: 22 DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMS 81
+ T Y DR P F +LN+ R G+L +E F+GI +
Sbjct: 72 EDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEY 131
Query: 82 RERSRDM 88
++R R+
Sbjct: 132 KDRKREN 138
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 72.4 bits (178), Expect = 6e-17
Identities = 19/67 (28%), Positives = 27/67 (40%)
Query: 22 DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLVPQLMEIIMS 81
T Y DR P F ILN+ R G+L + EE FFG+ +
Sbjct: 37 PETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEY 96
Query: 82 RERSRDM 88
++R R+
Sbjct: 97 KDRRREN 103
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 72.5 bits (178), Expect = 1e-16
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 22 DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
+ T Y DR P F +LN+ R G+L +E F+GI +
Sbjct: 50 EDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEI 100
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular
recogni zinc-binding; 2.00A {Aplysia californica} SCOP:
d.42.1.2
Length = 115
Score = 69.4 bits (170), Expect = 1e-15
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 1 MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVL 60
L+++ Y DR P F I+NY R+G+L ++
Sbjct: 30 RLSRLTEG--------MLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFE 81
Query: 61 EEARFFGIESLVPQLMEIIMSRER 84
EE F+G++S + +
Sbjct: 82 EELEFWGLDSNQVEPCCWMTYTAH 105
>1t1d_A Protein (potassium channel KV1.1); potassium channels,
tetramerization domain, aplysia KV1.1, proton
transport, membrane protein; 1.51A {Aplysia
californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A
1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Length = 100
Score = 62.9 bits (153), Expect = 2e-13
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 22 DSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGVLEEARFFGIESLV 72
Y DR+ F+ IL + ++ G+L N+ + EE +F+ +
Sbjct: 39 PLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENA 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 5e-06
Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 57/219 (26%)
Query: 12 GGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESL 71
+++N + +S E +L L+ +DPN I S+
Sbjct: 183 KIFWLNLKNCNSP------------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 72 VPQLMEIIMSRERSRDMMPLSRRDV-----INA-------LILTPITAELRFQGVNLAGS 119
+L ++ S+ ++ L +V NA L+ T RF+ V S
Sbjct: 231 QAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTT------RFKQVTDFLS 282
Query: 120 DLSR----LDLRNINFKVRKGLTLPACSVNLKGANL-----EGS----NMAGVNLR--VA 164
+ LD ++ + +L ++ + +L + ++ ++R +A
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 165 TLKNANLQNCD-LRAAVLAGADLENCDLSGSDLHEANLR 202
T N NCD L + + S + L A R
Sbjct: 343 TWDNWKHVNCDKLTTII---------ESSLNVLEPAEYR 372
Score = 29.4 bits (65), Expect = 1.2
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 3 AKMFAEGS---EGGYFMNP-GDVDSTGAYLIDRSPTY---FEPILNYLRN--GQLVLDP- 52
K+ + + G +N + Y+ D P Y IL++L L+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 53 -NI------NP-EGVLEEA 63
++ E + EEA
Sbjct: 565 TDLLRIALMAEDEAIFEEA 583
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 39.3 bits (91), Expect = 7e-04
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 22 DSTGAYLIDRSPTYFEPILNYLRNG-QLVLDPNINPEGVLEEARFFGIE 69
Y DR+ F+ IL Y ++G +L N+ + EE RF+ +
Sbjct: 90 PLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELG 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.008
Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 49/229 (21%)
Query: 15 FMNPGDVDSTGAYLIDRSPT----YFEPILNYLRNGQLVLDPNINP-EGVL------EEA 63
++ D+ + A L+ + T E I NY+ + P L A
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 64 RF---FG----IESLVPQLMEI-IMSRERSRDMMPLSRRDVINALILTPITAELRF-QGV 114
+ FG + +L ++ D++ S + ++ LI T + AE F QG+
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLDAEKVFTQGL 213
Query: 115 NLAG--------SDLSRLDLRNINFKVRKGLTLPAC-SVNLKGANLEGSNMAGVNLRVAT 165
N+ D L I+ + G+ A V K + L+ AT
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPL-IGVIQLAHYVVTAKLLGFTPGELRS-YLKGAT 271
Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM 214
+ L + A +A D S + + A+ ++
Sbjct: 272 GHSQGL----VTAVAIAETD------SWESFFVSVRK-------AITVL 303
Score = 30.0 bits (67), Expect = 0.70
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 28/124 (22%)
Query: 63 ARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALILTPITAELRFQGVN--LAGSD 120
A IESLV E++ R M RD + + +N +
Sbjct: 1774 ADVMSIESLV----EVV--FYRGMTMQVAVPRDELGR-------SNYGMIAINPGRVAAS 1820
Query: 121 LSRLDLRNINFKV--RKGLTLPACSVNLKGANLEGS------NMAGVNLRVATLKNANLQ 172
S+ L+ + +V R G + VN N+E ++ ++ L LQ
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEI--VNY---NVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 173 NCDL 176
D+
Sbjct: 1876 KIDI 1879
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 32.2 bits (74), Expect = 0.045
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 5 MFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEAR 64
++ SE F++ V + G F+ +L ++ G L LD N + + + A
Sbjct: 51 IYRSTSENNVFLDQSQVKADG----------FQKLLEFIYTGTLNLDSW-NVKEIHQAAD 99
Query: 65 FFGIESLV 72
+ +E +V
Sbjct: 100 YLKVEEVV 107
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 30.6 bits (70), Expect = 0.38
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 95 DVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKG 136
+ + A + + V+ +D L++IN + KG
Sbjct: 326 NGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 367
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 28.7 bits (65), Expect = 0.64
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 13/68 (19%)
Query: 5 MFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEAR 64
++ +GS G + + F +L++ G L L N + VL AR
Sbjct: 53 LYGDGSGGSVVLP--AGFAEI----------FGLLLDFFYTGHLALTSG-NRDQVLLAAR 99
Query: 65 FFGIESLV 72
+ V
Sbjct: 100 ELRVPEAV 107
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 28.7 bits (65), Expect = 0.72
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 32 SPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
+ +L ++ +L L P N + VL A F ++ ++
Sbjct: 70 NAAGLGQVLEFMYTAKLSLSPE-NVDDVLAVATFLQMQDII 109
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 28.4 bits (64), Expect = 0.79
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 32 SPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
F ILNY+ + ++V + + +++ + G++ +
Sbjct: 74 RAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIA 114
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 28.4 bits (64), Expect = 0.84
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 32 SPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
SP+ F +LN++ + L P + E AR G++SL
Sbjct: 69 SPSTFAQLLNFVYGESVELQPG-ELRPLQEAARALGVQSLE 108
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 29.5 bits (67), Expect = 1.0
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 94 RDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTL 139
+ NAL L + + F+ V + + L +NF V+ G +
Sbjct: 327 EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLV 372
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 29.1 bits (66), Expect = 1.1
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 94 RDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTL 139
+D+ A L + F+ V+ R L++++F V G TL
Sbjct: 39 KDLPGAGPLRFQKGRIEFENVHF-SYADGRETLQDVSFTVMPGQTL 83
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural
genomics, joint center for structural genomics, JCSG;
HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Length = 114
Score = 28.1 bits (63), Expect = 1.2
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 57 EGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALI 101
+ + + FF + +P ++EI+ ER + + L+
Sbjct: 59 KRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNIDFDGLV 103
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 29.1 bits (66), Expect = 1.4
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 98 NALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKG 136
+ E+ + V + L +++F + +G
Sbjct: 331 GKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQG 369
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 28.3 bits (64), Expect = 1.6
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 95 DVINALILTPITAELRFQGVNLA-GSDLSRLDLRNINFKVRKGLTL 139
+ F VN + + L++INF + G T
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTC 49
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 27.6 bits (62), Expect = 1.9
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 13/68 (19%)
Query: 5 MFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEAR 64
++ +G+ G + + F +L++ G L L N + VL A+
Sbjct: 54 IYGDGTGGSVVLP--AGFAEI----------FGLLLDFFYTGHLALTSG-NRDQVLLAAK 100
Query: 65 FFGIESLV 72
+ V
Sbjct: 101 ELRVPEAV 108
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 27.1 bits (61), Expect = 2.2
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 32 SPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
S ++++ L + N +L AR I ++
Sbjct: 73 SAEALTALMDFAYTATLTVSTA-NVGDILSAARLLEIPAVS 112
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 27.2 bits (61), Expect = 2.5
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 32 SPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
SP F+ IL Y L + + +L A IE L
Sbjct: 71 SPKTFQQILEYAYTATLQAKAE-DLDDLLYAAEILEIEYLE 110
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.9 bits (63), Expect = 2.7
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 98 NALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKG 136
++ T +L F+ V LRNIN K+ G
Sbjct: 331 GKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAG 369
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics,
NPPSFA, national project on PR structural and functional
analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Length = 127
Score = 27.0 bits (60), Expect = 2.8
Identities = 3/45 (6%), Positives = 20/45 (44%)
Query: 57 EGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALI 101
+ + + + + +P ++E++ ++ + + + + +I
Sbjct: 55 KSRVHSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPMIKDGMI 99
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 27.2 bits (61), Expect = 2.8
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 28 LIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
+ +P F +L+++ +L L N V+ A + +E +V
Sbjct: 73 DPEINPEGFNILLDFMYTSRLNLREG-NIMAVMATAMYLQMEHVV 116
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 26.8 bits (60), Expect = 3.0
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 32 SPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
P F+ IL++ G+L ++ + + ++ A F I+ ++
Sbjct: 78 QPQSFQQILSFCYTGRLSMNVG-DQDLLMYTAGFLQIQEIM 117
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like
muramidase, NLPC/P60 LD endopeptidase, STR genomics;
2.23A {Staphylococcus aureus subsp}
Length = 313
Score = 27.7 bits (61), Expect = 3.2
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 59 VLEEARFFGIESLVPQLMEIIM--SRERSRDMM 89
+ + + +GIE V ++ I+ S + D+M
Sbjct: 33 IEKYGKEYGIEDYVSYILAIMQVESGGTAEDVM 65
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 26.5 bits (59), Expect = 4.2
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 5 MFAEGSEGG-YFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEA 63
++ P +V G FEP++ + +L+L + N + V
Sbjct: 65 RIVGQTDAELTVTLPEEVTVKG----------FEPLIQFAYTAKLILSKD-NVDEVCRCV 113
Query: 64 RFFGIESLV 72
F + ++
Sbjct: 114 EFLSVHNIE 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.385
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,409,221
Number of extensions: 211786
Number of successful extensions: 1478
Number of sequences better than 10.0: 1
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 170
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)