RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17757
         (225 letters)



>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 105

 Score = 71.5 bits (175), Expect = 6e-17
 Identities = 18/61 (29%), Positives = 24/61 (39%)

Query: 12 GGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESL 71
          G    +      T  Y  DR P  F  ILN+ R G+L    +       EE  FFG+   
Sbjct: 27 GSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPE 86

Query: 72 V 72
          +
Sbjct: 87 I 87


>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
          {California sea hare (Aplysia californica) [TaxId:
          6500]}
          Length = 103

 Score = 69.5 bits (170), Expect = 3e-16
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 22 DSTGAYLIDRSPTYFEPILNYLRNGQLVLDPNINPEGVLEEARFFGIESLV 72
               Y  DR P  F  I+NY R+G+L    ++      EE  F+G++S  
Sbjct: 40 PVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQ 90


>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId:
           272131]}
          Length = 175

 Score = 68.0 bits (165), Expect = 6e-15
 Identities = 27/98 (27%), Positives = 40/98 (40%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
                L  + L    L                   L  AN+  ++++  NL  A L  A+
Sbjct: 77  LSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGAD 136

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKD 208
           L   DL  A L  A LE  +L+G++L +ANL G  L+ 
Sbjct: 137 LAIADLHQANLHQAALERANLTGANLEDANLEGTILEG 174



 Score = 57.2 bits (137), Expect = 6e-11
 Identities = 35/137 (25%), Positives = 46/137 (33%), Gaps = 35/137 (25%)

Query: 111 FQGVNLAGSDLSRLDLRNINFK------------------------------VRKGLTLP 140
           F  V+L G+ L  ++L                                            
Sbjct: 17  FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKAD 76

Query: 141 ACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDL---- 196
                L  A LEG+ +    L  A LK ANL+   L  A +  ADL   +L  +DL    
Sbjct: 77  LSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGAD 136

Query: 197 -HEANLRGANLKDAALE 212
              A+L  ANL  AALE
Sbjct: 137 LAIADLHQANLHQAALE 153



 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 18/87 (20%), Positives = 33/87 (37%)

Query: 91  LSRRDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGAN 150
           L    +  A++          +   L+ +++   DL   N +            +L  AN
Sbjct: 87  LEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQAN 146

Query: 151 LEGSNMAGVNLRVATLKNANLQNCDLR 177
           L  + +   NL  A L++ANL+   L 
Sbjct: 147 LHQAALERANLTGANLEDANLEGTILE 173



 Score = 39.9 bits (92), Expect = 7e-05
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 45/113 (39%)

Query: 145 NLKGANLEGSNMAGVNLRVATLKNANL--------------------------------- 171
           +    +L G+ +  +NL  A L  A L                                 
Sbjct: 16  DFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKA 75

Query: 172 ------------QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
                       +   L  AVL  A+L+  +L  + L  AN+R A+L +A LE
Sbjct: 76  DLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLE 128



 Score = 36.0 bits (82), Expect = 0.001
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 175 DLRAAVLAG-ADLENCDLSGSDLHEANLRGANLKDAAL 211
            LR    AG  D    DL G+ L   NL GA L  A L
Sbjct: 5   KLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAML 42



 Score = 36.0 bits (82), Expect = 0.001
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 169 ANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGAN 205
            +    DLR AVL   +L    L G+ L EANL+ AN
Sbjct: 15  RDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQAN 51


>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea
          hare (Aplysia californica) [TaxId: 6500]}
          Length = 100

 Score = 62.5 bits (152), Expect = 1e-13
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 1  MLAKMFAEGSEGGYFMNPGDVDSTGAYLIDRSPTYFEPILNYLRN-GQLVLDPNINPEGV 59
          +L              N         Y  DR+   F+ IL + ++ G+L    N+  +  
Sbjct: 26 LLGNPQKR--------NRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVF 77

Query: 60 LEEARFFGIESLV 72
           EE +F+ +    
Sbjct: 78 SEEIKFYELGENA 90


>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece
           sp. atcc 51142 [TaxId: 43989]}
          Length = 132

 Score = 61.0 bits (147), Expect = 1e-12
 Identities = 22/97 (22%), Positives = 41/97 (42%)

Query: 111 FQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNAN 170
           F G +L  +  +  DL + NF              L GA+L G+++      + + K A+
Sbjct: 13  FSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGAD 72

Query: 171 LQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLK 207
           L N  L  A++     ++  ++G+D   A L    + 
Sbjct: 73  LTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVD 109



 Score = 59.0 bits (142), Expect = 4e-12
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 111 FQGVNLAGSDLSRLDLRNINF-----KVRKGLTLPACSVNLKGANLEGSNMAGVNLRVAT 165
           ++ V L G D S   L    F                     G+ L G+++ G +L    
Sbjct: 3   YEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGL 62

Query: 166 LKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM 214
               + +  DL  AVL  A +       + +  A+   A L    ++ +
Sbjct: 63  AYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKL 111



 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 40/105 (38%)

Query: 149 ANLEGSNMAGVNLRVATLKNANLQNCDLRAA----------------------------- 179
           A+ E   + G +    +L  A   N DL  +                             
Sbjct: 1   ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTN 60

Query: 180 -----------VLAGADLENCDLSGSDLHEANLRGANLKDAALEL 213
                       L  A L    +  +   +A + GA+   A L++
Sbjct: 61  GLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDV 105



 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 184 ADLENCDLSGSDLHEANLRGANLKDAALELM 214
           A  E+  L G D    +L  A   +A L   
Sbjct: 1   ASYEDVKLIGEDFSGKSLTYAQFTNADLTDS 31



 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 10/44 (22%), Positives = 13/44 (29%)

Query: 179 AVLAGADLENCDLSGSDLHEANLRGANLKDAALELMLTPLHMSQ 222
           A      L   D SG  L  A    A+L D+          +  
Sbjct: 1   ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFN 44



 Score = 29.4 bits (65), Expect = 0.17
 Identities = 5/53 (9%), Positives = 11/53 (20%), Gaps = 3/53 (5%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLR 162
                    + ++  D             +        G N +       +LR
Sbjct: 82  IMMRTKFDDAKITGADFSLAVL---DVYEVDKLCDRADGVNPKTGVSTRESLR 131


>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 181

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 7/40 (17%), Positives = 13/40 (32%)

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDA 209
              +C+         DL       +   E +  G NL ++
Sbjct: 2   QWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAES 41



 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 8/38 (21%), Positives = 11/38 (28%)

Query: 168 NANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGAN 205
           +      D R   L+    E    S  D    NL  + 
Sbjct: 5   DCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQ 42



 Score = 45.8 bits (107), Expect = 6e-07
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 164 ATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEAN 200
                 + ++ DL       A    CD SG +L E+ 
Sbjct: 6   CEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQ 42



 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALELM 214
           +  DL  A   GA L++ DL G+ +     R A+L  A +++ 
Sbjct: 124 RGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVD 166



 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 155 NMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANL 206
           ++    LR A L  A      L       ADL    +       A+L GA +
Sbjct: 117 DLRKCVLRGADLSGARTTGARLD-----DADLRGATVDPVLWRTASLVGARV 163



 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 3/35 (8%), Positives = 12/35 (34%)

Query: 145 NLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAA 179
              G +    +++ ++   A     +    +L  +
Sbjct: 7   EFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAES 41



 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 7/41 (17%), Positives = 11/41 (26%)

Query: 149 ANLEGSNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENC 189
               G +    +L     + A    CD     LA +     
Sbjct: 6   CEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGS 46



 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 4/29 (13%), Positives = 7/29 (24%)

Query: 184 ADLENCDLSGSDLHEANLRGANLKDAALE 212
            +    D    DL   +   A   +    
Sbjct: 6   CEFTGRDFRDEDLSRLHTERAMFSECDFS 34



 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 160 NLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSDLH 197
                  ++ +L       A+ +  D    +L+ S   
Sbjct: 7   EFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHR 44



 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 170 NLQNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
           +L+ C LR A L+GA      L  +DL  A +     + A+L 
Sbjct: 117 DLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLV 159



 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 142 CSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLRAAVL------AGADLENCDLSG 193
              +L GA   G+ +   +LR AT+     +   L  A +      A A      L+G
Sbjct: 124 RGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAG 181



 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 5/28 (17%), Positives = 12/28 (42%)

Query: 185 DLENCDLSGSDLHEANLRGANLKDAALE 212
              +C+ +G D  + +L   + + A   
Sbjct: 2   QWVDCEFTGRDFRDEDLSRLHTERAMFS 29



 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 154 SNMAGVNLRVATLKNANLQNCDLRAAVLAGADLENCDLSGSD-LHEANLRGANL 206
           ++++G     A L +A+L+   +   +   A L    +     +  A   G  L
Sbjct: 126 ADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCL 179



 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 10/49 (20%)

Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNM 156
           +  F G +    DLSRL      F             +  G NL  S  
Sbjct: 5   DCEFTGRDFRDEDLSRLHTERAMFS----------ECDFSGVNLAESQH 43



 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 15/65 (23%)

Query: 110 RFQGVNLAGSDLSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNA 169
           ++      G D    DL                 ++ + A     + +GVNL  +  + +
Sbjct: 2   QWVDCEFTGRDFRDEDLSR---------------LHTERAMFSECDFSGVNLAESQHRGS 46

Query: 170 NLQNC 174
             +NC
Sbjct: 47  AFRNC 51



 Score = 35.0 bits (79), Expect = 0.004
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 172 QNCDLRAAVLAGADLENCDLSGSDLHEANLRGANLKDAALE 212
            + DLR  VL GADL     +G+ L +A+LRGA +      
Sbjct: 114 VDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWR 154


>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 102

 Score = 29.2 bits (66), Expect = 0.15
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 56  PEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRDVINALI 101
            +  +  + FF +   +P ++EI+   ER    +        + L+
Sbjct: 48  HKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNIDFDGLV 93


>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
           ATP-binding/permease protein SAV1866 {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 255

 Score = 30.1 bits (68), Expect = 0.15
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 94  RDVINALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKG 136
           ++ + A  +      +    V+   +D     L++IN  + KG
Sbjct: 2   KNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 44


>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
           MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 253

 Score = 29.4 bits (66), Expect = 0.32
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 98  NALILTPITAELRFQGVNLAGSDLSRLDLRNINFKVRKGLTL 139
              ++   T +L F+ V           LRNIN K+  G T+
Sbjct: 3   GKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTV 44


>d1k8wa3 b.122.1.1 (A:251-312) Pseudouridine synthase II TruB,
          C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 62

 Score = 26.6 bits (59), Expect = 0.52
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)

Query: 41 NYLRNGQLVLDPNINPEGVL-----EEARFFGI 68
           Y +NG  V       EG++     E  +F G+
Sbjct: 12 VYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGM 44


>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 460

 Score = 28.4 bits (61), Expect = 0.75
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 13/89 (14%)

Query: 143 SVNLKGANLEGSNMAGVNL-----RVATLKNANLQNCDLR---AAVLAGADLENCDLSGS 194
           S++++  +++   ++          +   +   L +C L       ++ A L        
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVN----P 55

Query: 195 DLHEANLRGANLKDAALELMLTPLHMSQT 223
            L E NLR   L D  +  +L  L     
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPSC 84


>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 536

 Score = 27.4 bits (61), Expect = 1.8
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 46  GQLVLDPNINPEGVLEE--ARFFGIESLVPQLMEIIM--SRERSRD-MMPL 91
           G+L  +P+++ E +  E   + FG +S V + +  ++  S     +   PL
Sbjct: 324 GRLAWNPDLSAEEIANEWVVQTFGDDSQVVETISWMLLSSWRIYENYTSPL 374


>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
           {Pseudomonas cellulosa [TaxId: 155077]}
          Length = 561

 Score = 27.0 bits (60), Expect = 2.1
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 11/54 (20%)

Query: 46  GQLVLDPNINPEGVLEE--ARFFG-----IESLVPQLMEIIMSRERSRD-MMPL 91
           G++  D  I+     +E     F      IE +   ++    SRE   +   PL
Sbjct: 316 GRMAWDHQISAATAADEWLRMTFSNQPAFIEPVKQMMLV---SREAGVNYRSPL 366


>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
           pestis [TaxId: 632]}
          Length = 353

 Score = 25.9 bits (55), Expect = 4.7
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 121 LSRLDLRNINFKVRKGLTLPACSVNLKGANLEGSNMAGVNLRVATLKNANLQNCDLR 177
           L  L++ N          LPA    L+      +++A V      LK  +++   LR
Sbjct: 286 LEELNVSNNKLI-----ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLR 337


>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
           {Escherichia coli [TaxId: 562]}
          Length = 241

 Score = 25.6 bits (56), Expect = 5.4
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 108 ELRFQGVNLAGSDLSRLDLRNINFKVRKGLTL 139
           ++ F+ +       S + L NIN  +++G  +
Sbjct: 1   DITFRNIRFRYKPDSPVILDNINLSIKQGEVI 32


>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 217

 Score = 25.4 bits (55), Expect = 5.7
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 52 PNINPEGVLEEARFFGIESLVPQLMEIIMSRERSRDMMPLSRRD 95
           +  P+GV+ + R F +ES     +         +   P SR D
Sbjct: 5  THTGPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDD 48


>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 251

 Score = 25.2 bits (55), Expect = 6.2
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 101 ILTP--ITAELRFQGVNLA-GSDLSRLDLRNINFKVRKGLTL 139
           +LTP  +   ++FQ V+ A  +    L L+ + F +R G   
Sbjct: 2   LLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVT 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 784,097
Number of extensions: 35509
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 53
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)