BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17759
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WRF|A Chain A, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|B Chain B, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|C Chain C, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|D Chain D, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|E Chain E, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|F Chain F, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|G Chain G, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|H Chain H, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|I Chain I, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
Length = 507
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 81
F + EFSN+ +R + +KMED ++ + +EL+
Sbjct: 403 FEAVGKEFSNLEKRLENLNKKMEDGFLDVWTYNAELL 439
>pdb|2WRE|A Chain A, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|B Chain B, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|C Chain C, Structure Of H2 Japan Hemagglutinin With Human Receptor
Length = 505
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 81
F + EFSN+ R + +KMED ++ + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439
>pdb|2WR3|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR4|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR5|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
Length = 507
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 81
F + EFSN+ R + +KMED ++ + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439
>pdb|2WRD|A Chain A, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|B Chain B, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|C Chain C, Structure Of H2 Japan Hemagglutinin
Length = 505
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 81
F + EFSN+ R + +KMED ++ + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439
>pdb|2WR7|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WRB|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRC|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
Length = 506
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 81
F + EFSN+ R + +KMED ++ + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439
>pdb|2WR0|A Chain A, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|B Chain B, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|C Chain C, Structures Of Influenza H2 Hemagglutinins
pdb|2WR1|A Chain A, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|B Chain B, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|C Chain C, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR2|A Chain A, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|B Chain B, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|C Chain C, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
Length = 509
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 81
F + EFSN+ R + +KMED ++ + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439
>pdb|2DGY|A Chain A, Solution Structure Of The Eukaryotic Initiation Factor
1a In Mgc11102 Protein
Length = 111
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 30 LTSMADSGKRNIPIKLGDFSVID 52
L SM ++NI IK GDF ++D
Sbjct: 41 LVSMPSKYRKNIWIKRGDFLIVD 63
>pdb|3QQB|B Chain B, Crystal Structure Of Ha2 R106h Mutant Of H2
Hemagglutinin, Neutral Ph Form
pdb|3QQE|B Chain B, Crystal Structure Of Ha2 R106h Mutant Of H2
Hemagglutinin, Re- Neutralized Form
pdb|3QQO|B Chain B, Crystal Structure Of Ha2 R106h Mutant Of H2
Hemagglutinin, Acidic Ph Form
pdb|3QQO|D Chain D, Crystal Structure Of Ha2 R106h Mutant Of H2
Hemagglutinin, Acidic Ph Form
pdb|3QQO|F Chain F, Crystal Structure Of Ha2 R106h Mutant Of H2
Hemagglutinin, Acidic Ph Form
Length = 174
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 81
F + EFSN+ R + +KMED ++ + +EL+
Sbjct: 63 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,435,783
Number of Sequences: 62578
Number of extensions: 78926
Number of successful extensions: 333
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 9
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)