BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17759
         (100 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|E2R1I5|CCD39_CANFA Coiled-coil domain-containing protein 39 OS=Canis familiaris
           GN=CCDC39 PE=3 SV=1
          Length = 939

 Score = 30.4 bits (67), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 61  RFDAEMRKMEDEMTKFRSELMNRESNFFKTSTR 93
           R   E++++E+EMT  R +  ++E+N FKT+ +
Sbjct: 96  RIKDEIQRLENEMTSIREKKSDKENNIFKTTQK 128


>sp|O60861|GAS7_HUMAN Growth arrest-specific protein 7 OS=Homo sapiens GN=GAS7 PE=1 SV=3
          Length = 476

 Score = 28.9 bits (63), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 32  SMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFK 89
           S+AD  + ++       S ++    N RE F  +M+K +  +   R +L +R ++  K
Sbjct: 281 SLADEAEVHLKFSAKLHSEVEKPLMNFRENFKKDMKKCDHHIADLRKQLASRYASVEK 338


>sp|Q45VK7|DYHC2_MOUSE Cytoplasmic dynein 2 heavy chain 1 OS=Mus musculus GN=Dync2h1 PE=1
            SV=1
          Length = 4306

 Score = 28.9 bits (63), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 34   ADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSEL 80
            ADS  + I + + D S   +E   +++R   E+ K+E+  +K   EL
Sbjct: 2931 ADSALQEITVSMQDASEQKTELERLKQRIAEEVVKIEERKSKIDDEL 2977


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,382,034
Number of Sequences: 539616
Number of extensions: 1033888
Number of successful extensions: 4873
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4869
Number of HSP's gapped (non-prelim): 9
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)