Query psy17759
Match_columns 100
No_of_seqs 18 out of 20
Neff 1.7
Searched_HMMs 46136
Date Fri Aug 16 22:07:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08826 DMPK_coil: DMPK coile 60.1 11 0.00023 24.5 2.6 18 62-79 44-61 (61)
2 PF04201 TPD52: Tumour protein 57.7 13 0.00028 28.4 3.1 27 59-85 31-57 (162)
3 PF09730 BicD: Microtubule-ass 54.1 12 0.00027 33.8 2.8 30 53-82 622-651 (717)
4 PF14689 SPOB_a: Sensor_kinase 53.7 17 0.00037 22.4 2.7 26 58-83 1-26 (62)
5 PF03763 Remorin_C: Remorin, C 52.2 21 0.00045 25.0 3.2 29 55-83 35-63 (111)
6 PF11559 ADIP: Afadin- and alp 50.2 25 0.00055 24.2 3.4 28 54-81 123-150 (151)
7 PF01920 Prefoldin_2: Prefoldi 44.0 73 0.0016 19.9 4.5 44 37-81 43-86 (106)
8 PF08581 Tup_N: Tup N-terminal 41.9 20 0.00044 24.0 1.8 14 70-83 63-76 (79)
9 KOG0999|consensus 41.4 26 0.00057 32.4 3.0 30 53-82 637-666 (772)
10 PF10260 SAYSvFN: Uncharacteri 40.9 13 0.00028 24.9 0.7 26 42-67 41-71 (71)
11 PF04538 BEX: Brain expressed 39.9 35 0.00076 23.8 2.8 22 58-81 66-87 (100)
12 KOG3189|consensus 39.6 32 0.00069 28.3 2.9 25 26-53 105-129 (252)
13 PF05582 Peptidase_U57: YabG p 35.4 57 0.0012 27.0 3.8 67 4-81 15-81 (287)
14 PF08172 CASP_C: CASP C termin 32.9 61 0.0013 25.4 3.4 24 56-79 85-108 (248)
15 PF05890 Ebp2: Eukaryotic rRNA 31.0 33 0.00072 27.2 1.7 23 62-84 109-131 (271)
16 COG5132 BUD31 Cell cycle contr 30.4 24 0.00052 26.9 0.8 22 53-74 14-38 (146)
17 KOG3866|consensus 28.9 46 0.00099 29.1 2.3 19 64-82 285-303 (442)
18 PF05308 Mito_fiss_reg: Mitoch 28.7 60 0.0013 25.6 2.8 19 64-82 119-140 (253)
19 smart00595 MADF subfamily of S 28.1 49 0.0011 20.2 1.8 23 52-74 45-67 (89)
20 PF02096 60KD_IMP: 60Kd inner 28.0 80 0.0017 22.3 3.1 27 53-79 37-63 (198)
21 PF13348 Y_phosphatase3C: Tyro 27.8 29 0.00063 20.8 0.7 34 48-81 35-68 (68)
22 PF09340 NuA4: Histone acetylt 26.0 43 0.00092 22.1 1.3 26 67-92 12-37 (80)
23 PF13801 Metal_resist: Heavy-m 25.8 1.1E+02 0.0025 18.4 3.1 29 54-82 49-77 (125)
24 cd08049 TAF8 TATA Binding Prot 25.6 92 0.002 18.9 2.7 29 50-78 24-52 (54)
25 PF13864 Enkurin: Calmodulin-b 24.6 95 0.0021 20.4 2.8 22 57-78 74-95 (98)
26 PF10406 TAF8_C: Transcription 24.4 95 0.0021 18.9 2.6 27 50-76 24-50 (51)
27 cd00890 Prefoldin Prefoldin is 24.4 1.8E+02 0.004 18.7 4.1 26 38-64 68-94 (129)
28 PF14988 DUF4515: Domain of un 24.4 85 0.0018 23.8 2.8 27 54-80 75-101 (206)
29 PF09551 Spore_II_R: Stage II 23.4 25 0.00053 25.8 -0.2 15 21-35 114-128 (130)
30 KOG0894|consensus 23.2 34 0.00073 28.0 0.5 22 11-32 83-106 (244)
31 PRK05729 valS valyl-tRNA synth 22.7 79 0.0017 28.1 2.7 28 55-82 809-836 (874)
32 COG2216 KdpB High-affinity K+ 22.6 48 0.001 30.5 1.4 17 52-69 446-462 (681)
33 PF08700 Vps51: Vps51/Vps67; 22.2 1E+02 0.0022 18.9 2.5 17 65-81 59-75 (87)
34 PF12022 DUF3510: Domain of un 20.7 1.3E+02 0.0028 20.8 2.9 25 55-79 68-99 (125)
35 PF06956 RtcR: Regulator of RN 20.2 97 0.0021 24.3 2.5 25 43-67 147-174 (183)
36 KOG3564|consensus 20.1 1.1E+02 0.0023 28.0 2.9 24 59-82 44-67 (604)
No 1
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=60.11 E-value=11 Score=24.47 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=14.1
Q ss_pred HHHHHHhhHHHHHHHHHH
Q psy17759 62 FDAEMRKMEDEMTKFRSE 79 (100)
Q Consensus 62 FdaEMrkMEEEM~kFRse 79 (100)
+.+||++++++|..+|++
T Consensus 44 L~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 44 LEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 678999999999998874
No 2
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=57.68 E-value=13 Score=28.35 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccc
Q psy17759 59 RERFDAEMRKMEDEMTKFRSELMNRES 85 (100)
Q Consensus 59 RERFdaEMrkMEEEM~kFRselmnrEs 85 (100)
||...+|+.|+|||+.-+|.-|.-+|.
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer 57 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKER 57 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999988775
No 3
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=54.07 E-value=12 Score=33.81 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=26.9
Q ss_pred ccccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17759 53 SEFSNIRERFDAEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 53 ~EFssiRERFdaEMrkMEEEM~kFRselmn 82 (100)
.+-+|+|.+|+.|=.=+.|.|.|+|+||--
T Consensus 622 vALanLKsKYE~EK~~v~etm~kLRnELK~ 651 (717)
T PF09730_consen 622 VALANLKSKYENEKAMVSETMMKLRNELKA 651 (717)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 456899999999999999999999999943
No 4
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.66 E-value=17 Score=22.42 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhhcc
Q psy17759 58 IRERFDAEMRKMEDEMTKFRSELMNR 83 (100)
Q Consensus 58 iRERFdaEMrkMEEEM~kFRselmnr 83 (100)
|..+.-.+++.+-+.+.+.|.+++|+
T Consensus 1 ~~~~~~~~~~~~~~~lR~~RHD~~Nh 26 (62)
T PF14689_consen 1 MTKQQLEELEELIDSLRAQRHDFLNH 26 (62)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhHHHHHH
Confidence 45667788899999999999999985
No 5
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=52.22 E-value=21 Score=25.00 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHhhHHHHHHHHHHhhcc
Q psy17759 55 FSNIRERFDAEMRKMEDEMTKFRSELMNR 83 (100)
Q Consensus 55 FssiRERFdaEMrkMEEEM~kFRselmnr 83 (100)
=+.-+-.-+++|+++|..+.+-|+..+++
T Consensus 35 En~qkaKaea~m~k~E~klEkkra~a~ek 63 (111)
T PF03763_consen 35 ENLQKAKAEAEMRKIEEKLEKKRAKALEK 63 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999887764
No 6
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.24 E-value=25 Score=24.18 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=23.9
Q ss_pred cccchHHHHHHHHHhhHHHHHHHHHHhh
Q psy17759 54 EFSNIRERFDAEMRKMEDEMTKFRSELM 81 (100)
Q Consensus 54 EFssiRERFdaEMrkMEEEM~kFRselm 81 (100)
-..+++-.+..||||-|-|+.++...|-
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457788999999999999999998763
No 7
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.02 E-value=73 Score=19.87 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=31.3
Q ss_pred CccccccccCCceeecccccchHHHHHHHHHhhHHHHHHHHHHhh
Q psy17759 37 GKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELM 81 (100)
Q Consensus 37 ~kr~IPIklgd~SViD~EFssiRERFdaEMrkMEEEM~kFRselm 81 (100)
+.+.|...+|+.-|.- .-..+.+.-...+..++.++.++...+-
T Consensus 43 ~~~~~y~~vG~~fv~~-~~~~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 43 DDRKVYKSVGKMFVKQ-DKEEAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp TT-EEEEEETTEEEEE-EHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999987776 4567777777777777777777666553
No 8
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=41.86 E-value=20 Score=23.97 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhcc
Q psy17759 70 EDEMTKFRSELMNR 83 (100)
Q Consensus 70 EEEM~kFRselmnr 83 (100)
|||+.++|.+|.++
T Consensus 63 EeEI~rLr~eLe~r 76 (79)
T PF08581_consen 63 EEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhh
Confidence 77788888888664
No 9
>KOG0999|consensus
Probab=41.44 E-value=26 Score=32.40 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=27.2
Q ss_pred ccccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17759 53 SEFSNIRERFDAEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 53 ~EFssiRERFdaEMrkMEEEM~kFRselmn 82 (100)
...+|||++++.|=.-|=|-|.|+|+||-.
T Consensus 637 valtnlksKYEnEK~mvtetm~KlRnELk~ 666 (772)
T KOG0999|consen 637 VALTNLKSKYENEKAMVTETMDKLRNELKA 666 (772)
T ss_pred HHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999976
No 10
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=40.86 E-value=13 Score=24.89 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=20.6
Q ss_pred ccccCCceeecccccch-----HHHHHHHHH
Q psy17759 42 PIKLGDFSVIDSEFSNI-----RERFDAEMR 67 (100)
Q Consensus 42 PIklgd~SViD~EFssi-----RERFdaEMr 67 (100)
|=+++-|||+...|.+| -|+||.|||
T Consensus 41 ~ge~SAYSVFN~~~~~i~Gtl~aE~~ereir 71 (71)
T PF10260_consen 41 PGELSAYSVFNKGCERIPGTLTAEQFEREIR 71 (71)
T ss_pred CCCccchhhhCCCccccCCCCCHHHHHHhhC
Confidence 44588899999999887 478888775
No 11
>PF04538 BEX: Brain expressed X-linked like family ; InterPro: IPR021156 This entry includes the human p75NTR-associated cell death executor (Nerve growth factor receptor associated protein 1), which may be a signalling adaptor molecule involved in p75NTR-apoptosis induced by nerve growth factor. It may be important in neurogenetic diseases. The proteins are also annotated as Brain expressed X-linked like (BEX), which is a signalling adapter molecule involved in p75NTR-mediated apoptosis induced by NGF, which plays an role in zinc-triggered neuronal death.
Probab=39.94 E-value=35 Score=23.79 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhh
Q psy17759 58 IRERFDAEMRKMEDEMTKFRSELM 81 (100)
Q Consensus 58 iRERFdaEMrkMEEEM~kFRselm 81 (100)
||+ ..+|.|+.|||.+.|..|.
T Consensus 66 ~r~--~ddmeR~~eE~R~~r~Kl~ 87 (100)
T PF04538_consen 66 IRE--GDDMERFMEEMRKLRQKLR 87 (100)
T ss_pred hHh--hhhHHHHHHHHHHHHHHhc
Confidence 676 5688888888888888775
No 12
>KOG3189|consensus
Probab=39.56 E-value=32 Score=28.28 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=19.1
Q ss_pred hhhhhhhhcccCccccccccCCceeecc
Q psy17759 26 PRLCLTSMADSGKRNIPIKLGDFSVIDS 53 (100)
Q Consensus 26 ~~~~~~~Ma~~~kr~IPIklgd~SViD~ 53 (100)
-..||.-|| ..++|||.|.|-=+-+
T Consensus 105 iNF~LrYls---didlPiKRGtFiEFRN 129 (252)
T KOG3189|consen 105 INFCLRYLS---DIDLPIKRGTFIEFRN 129 (252)
T ss_pred HHHHHHHHH---hcCCcccccceEEecC
Confidence 456899997 4789999999864433
No 13
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=35.42 E-value=57 Score=26.97 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=42.1
Q ss_pred eeEEEEEEEeecccccccccchhhhhhhhhcccCccccccccCCceeecccccchHHHHHHHHHhhHHHHHHHHHHhh
Q psy17759 4 KFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELM 81 (100)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ma~~~kr~IPIklgd~SViD~EFssiRERFdaEMrkMEEEM~kFRselm 81 (100)
..+.||+++.+.-. .=.-+.--+.+--+||++ +.|+.++|.+- ++++=..+++++++-|.+++.+..
T Consensus 15 DI~FrIidI~~~~g--~~~aiLkG~d~RLiADAP-------~~DL~~v~~~e--~~~~~~~~~~~~~~~~~~~~~~r~ 81 (287)
T PF05582_consen 15 DILFRIIDIKEENG--KKIAILKGLDMRLIADAP-------LDDLVKVDEEE--VREYEKRFNEKVNESLRRIRQDRK 81 (287)
T ss_pred ceEEEEEEEEcCCC--ceEEEEeCCceEEEecCC-------HHHcccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888877111 011112222333468877 77888888753 455555678899999999998876
No 14
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.85 E-value=61 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHhhHHHHHHHHHH
Q psy17759 56 SNIRERFDAEMRKMEDEMTKFRSE 79 (100)
Q Consensus 56 ssiRERFdaEMrkMEEEM~kFRse 79 (100)
++=||||-+-...+|+|+.+...+
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~ 108 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQT 108 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345999976666666665554433
No 15
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=31.03 E-value=33 Score=27.20 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.7
Q ss_pred HHHHHHhhHHHHHHHHHHhhccc
Q psy17759 62 FDAEMRKMEDEMTKFRSELMNRE 84 (100)
Q Consensus 62 FdaEMrkMEEEM~kFRselmnrE 84 (100)
|-|||=|=++-|.|.|..|+..+
T Consensus 109 YfAEMvKSD~HM~KVr~kLl~~~ 131 (271)
T PF05890_consen 109 YFAEMVKSDEHMEKVRQKLLKEQ 131 (271)
T ss_pred chHHHhcCHHHHHHHHHHHHHHH
Confidence 56999999999999999999854
No 16
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=30.38 E-value=24 Score=26.95 Aligned_cols=22 Identities=45% Similarity=0.762 Sum_probs=17.5
Q ss_pred ccccchH---HHHHHHHHhhHHHHH
Q psy17759 53 SEFSNIR---ERFDAEMRKMEDEMT 74 (100)
Q Consensus 53 ~EFssiR---ERFdaEMrkMEEEM~ 74 (100)
++|..|| +.|++|||..|..|.
T Consensus 14 dgFeki~ptL~~fe~~mRqaen~~~ 38 (146)
T COG5132 14 DGFEKIRPTLEKFEAEMRQAENAPL 38 (146)
T ss_pred cchhhhcchHHHHHHHHHHHhcCCC
Confidence 4676666 789999999998764
No 17
>KOG3866|consensus
Probab=28.95 E-value=46 Score=29.10 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=16.8
Q ss_pred HHHHhhHHHHHHHHHHhhc
Q psy17759 64 AEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 64 aEMrkMEEEM~kFRselmn 82 (100)
..|+.|||||-|.|.-.|+
T Consensus 285 DDM~EmeEErlRMREHVMk 303 (442)
T KOG3866|consen 285 DDMKEMEEERLRMREHVMK 303 (442)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4699999999999998886
No 18
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=28.66 E-value=60 Score=25.64 Aligned_cols=19 Identities=32% Similarity=0.772 Sum_probs=15.1
Q ss_pred HHHHh---hHHHHHHHHHHhhc
Q psy17759 64 AEMRK---MEDEMTKFRSELMN 82 (100)
Q Consensus 64 aEMrk---MEEEM~kFRselmn 82 (100)
+-++| +|+|++++|+++-.
T Consensus 119 ~AlqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44566 89999999999743
No 19
>smart00595 MADF subfamily of SANT domain.
Probab=28.11 E-value=49 Score=20.25 Aligned_cols=23 Identities=17% Similarity=0.658 Sum_probs=18.3
Q ss_pred cccccchHHHHHHHHHhhHHHHH
Q psy17759 52 DSEFSNIRERFDAEMRKMEDEMT 74 (100)
Q Consensus 52 D~EFssiRERFdaEMrkMEEEM~ 74 (100)
=.-+.+||.+|..|++++.....
T Consensus 45 ~~kw~~LR~~y~~e~~r~~~~~~ 67 (89)
T smart00595 45 KKRWKNLRDRYRRELKRLQNGKS 67 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34688999999999999876543
No 20
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=28.04 E-value=80 Score=22.27 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=21.5
Q ss_pred ccccchHHHHHHHHHhhHHHHHHHHHH
Q psy17759 53 SEFSNIRERFDAEMRKMEDEMTKFRSE 79 (100)
Q Consensus 53 ~EFssiRERFdaEMrkMEEEM~kFRse 79 (100)
.+-..|++|..++++++-+||.++..+
T Consensus 37 P~l~~i~~k~~~~~~~~~~~~~~l~k~ 63 (198)
T PF02096_consen 37 PELKEIQEKYKEDQQKMQQEMQKLYKK 63 (198)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 444588999988888888888888765
No 21
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=27.80 E-value=29 Score=20.80 Aligned_cols=34 Identities=18% Similarity=0.517 Sum_probs=25.2
Q ss_pred ceeecccccchHHHHHHHHHhhHHHHHHHHHHhh
Q psy17759 48 FSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELM 81 (100)
Q Consensus 48 ~SViD~EFssiRERFdaEMrkMEEEM~kFRselm 81 (100)
+..|+..|||+..=+.+++.==+++..++|..++
T Consensus 35 l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~lL 68 (68)
T PF13348_consen 35 LDAIDERYGSVENYLREELGLSEEDIERLRERLL 68 (68)
T ss_dssp HHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHcC
Confidence 4567888899888888888888889999998764
No 22
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=26.05 E-value=43 Score=22.13 Aligned_cols=26 Identities=12% Similarity=0.609 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHhhcccccceeccC
Q psy17759 67 RKMEDEMTKFRSELMNRESNFFKTST 92 (100)
Q Consensus 67 rkMEEEM~kFRselmnrEsnff~~t~ 92 (100)
+++|++++..-.+.-+.|...+..++
T Consensus 12 ~~Le~~L~~lE~qIy~~Et~YL~~~~ 37 (80)
T PF09340_consen 12 KKLEKDLAALEKQIYDKETSYLEDTS 37 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34455555555555555555555333
No 23
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=25.80 E-value=1.1e+02 Score=18.44 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=21.7
Q ss_pred cccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17759 54 EFSNIRERFDAEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 54 EFssiRERFdaEMrkMEEEM~kFRselmn 82 (100)
++..|.+.|-.+|+.+..+|...|.++..
T Consensus 49 ~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ 77 (125)
T PF13801_consen 49 KLRALMDEFRQEMRALRQELRAARQELRA 77 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888888888877643
No 24
>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8. The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promo
Probab=25.58 E-value=92 Score=18.88 Aligned_cols=29 Identities=14% Similarity=0.322 Sum_probs=25.2
Q ss_pred eecccccchHHHHHHHHHhhHHHHHHHHH
Q psy17759 50 VIDSEFSNIRERFDAEMRKMEDEMTKFRS 78 (100)
Q Consensus 50 ViD~EFssiRERFdaEMrkMEEEM~kFRs 78 (100)
..+++...||++=.+|=|++|+.+.+|-.
T Consensus 24 ~~~~d~~~~r~~~~~~~r~~e~aL~~l~~ 52 (54)
T cd08049 24 ERETDPKKLREELASQRRLAEKALLRLQQ 52 (54)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778899999999999999999988743
No 25
>PF13864 Enkurin: Calmodulin-binding
Probab=24.59 E-value=95 Score=20.43 Aligned_cols=22 Identities=18% Similarity=0.554 Sum_probs=18.6
Q ss_pred chHHHHHHHHHhhHHHHHHHHH
Q psy17759 57 NIRERFDAEMRKMEDEMTKFRS 78 (100)
Q Consensus 57 siRERFdaEMrkMEEEM~kFRs 78 (100)
+=|+..+++|+.+|+.+..|..
T Consensus 74 ~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 74 RRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4478899999999999998853
No 26
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []. The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].
Probab=24.39 E-value=95 Score=18.87 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.4
Q ss_pred eecccccchHHHHHHHHHhhHHHHHHH
Q psy17759 50 VIDSEFSNIRERFDAEMRKMEDEMTKF 76 (100)
Q Consensus 50 ViD~EFssiRERFdaEMrkMEEEM~kF 76 (100)
.-+++...+|+|-.+|=|+.|+.+.+|
T Consensus 24 ~~~~d~~~~r~~~~~~~r~~e~aL~~l 50 (51)
T PF10406_consen 24 ERETDPKKIREKAAEQSRLAEKALRKL 50 (51)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 446678899999999999999999876
No 27
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.39 E-value=1.8e+02 Score=18.69 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=15.7
Q ss_pred ccccccccC-CceeecccccchHHHHHH
Q psy17759 38 KRNIPIKLG-DFSVIDSEFSNIRERFDA 64 (100)
Q Consensus 38 kr~IPIklg-d~SViD~EFssiRERFda 64 (100)
..+|.|.+| ++.|- -....-.+.++.
T Consensus 68 ~~~v~v~iG~~~~ve-~~~~eA~~~l~~ 94 (129)
T cd00890 68 DDKVLVDLGTGVYVE-KSLEEAIEFLKK 94 (129)
T ss_pred CCEEEEEecCCEEEE-ecHHHHHHHHHH
Confidence 557999999 87775 333333344433
No 28
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=24.37 E-value=85 Score=23.81 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=23.5
Q ss_pred cccchHHHHHHHHHhhHHHHHHHHHHh
Q psy17759 54 EFSNIRERFDAEMRKMEDEMTKFRSEL 80 (100)
Q Consensus 54 EFssiRERFdaEMrkMEEEM~kFRsel 80 (100)
+|..+|+.=+.||+.+++||.+-+.+-
T Consensus 75 ~~~~~k~~qe~eI~~Le~e~~~~~~e~ 101 (206)
T PF14988_consen 75 EFRRLKEQQEREIQTLEEELEKMRAEH 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999877653
No 29
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=23.37 E-value=25 Score=25.76 Aligned_cols=15 Identities=27% Similarity=0.851 Sum_probs=11.9
Q ss_pred cccchhhhhhhhhcc
Q psy17759 21 FSSVFPRLCLTSMAD 35 (100)
Q Consensus 21 ~~~~~~~~~~~~Ma~ 35 (100)
+--+||.||.+.++.
T Consensus 114 WCVLfPpLCf~d~~~ 128 (130)
T PF09551_consen 114 WCVLFPPLCFVDATN 128 (130)
T ss_pred EEEecCCceeeeccc
Confidence 345899999998874
No 30
>KOG0894|consensus
Probab=23.15 E-value=34 Score=28.01 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=16.2
Q ss_pred EEeecccccccc--cchhhhhhhh
Q psy17759 11 EVRECLSVSDFS--SVFPRLCLTS 32 (100)
Q Consensus 11 ~~~~~~~~~~~~--~~~~~~~~~~ 32 (100)
.-|-|||.|||- |.-|-.|..+
T Consensus 83 ntRLCLSiSDfHPdsWNP~WsVSt 106 (244)
T KOG0894|consen 83 NTRLCLSISDFHPDSWNPGWSVST 106 (244)
T ss_pred CceEEEeccccCcCcCCCcccHHH
Confidence 358899999995 6677776543
No 31
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=22.69 E-value=79 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=21.0
Q ss_pred ccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17759 55 FSNIRERFDAEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 55 FssiRERFdaEMrkMEEEM~kFRselmn 82 (100)
+..-++|...|+.+++.|+.+....|-|
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n 836 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSN 836 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566778888888888888887777765
No 32
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=22.63 E-value=48 Score=30.51 Aligned_cols=17 Identities=59% Similarity=0.814 Sum_probs=13.2
Q ss_pred cccccchHHHHHHHHHhh
Q psy17759 52 DSEFSNIRERFDAEMRKM 69 (100)
Q Consensus 52 D~EFssiRERFdaEMrkM 69 (100)
|.==..||||| +|+|||
T Consensus 446 DivK~Gi~ERf-~elR~M 462 (681)
T COG2216 446 DIVKPGIKERF-AELRKM 462 (681)
T ss_pred hhcchhHHHHH-HHHHhc
Confidence 44457899999 589988
No 33
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=22.20 E-value=1e+02 Score=18.87 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=11.4
Q ss_pred HHHhhHHHHHHHHHHhh
Q psy17759 65 EMRKMEDEMTKFRSELM 81 (100)
Q Consensus 65 EMrkMEEEM~kFRselm 81 (100)
|+..|+..|..+++.+-
T Consensus 59 ~I~~m~~~~~~l~~~l~ 75 (87)
T PF08700_consen 59 EISSMENDLSELRNLLS 75 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677777777776554
No 34
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=20.68 E-value=1.3e+02 Score=20.83 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=19.4
Q ss_pred ccchHHHHHHH-------HHhhHHHHHHHHHH
Q psy17759 55 FSNIRERFDAE-------MRKMEDEMTKFRSE 79 (100)
Q Consensus 55 FssiRERFdaE-------MrkMEEEM~kFRse 79 (100)
+..+=+||-+. ++|+||-+.|++..
T Consensus 68 ~~~v~~~y~~~~~evL~sv~KtEeSL~rlkk~ 99 (125)
T PF12022_consen 68 ITEVTERYYEIASEVLTSVRKTEESLKRLKKR 99 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677766 88999999999864
No 35
>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.
Probab=20.22 E-value=97 Score=24.30 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=19.6
Q ss_pred cccCCceeec---ccccchHHHHHHHHH
Q psy17759 43 IKLGDFSVID---SEFSNIRERFDAEMR 67 (100)
Q Consensus 43 Iklgd~SViD---~EFssiRERFdaEMr 67 (100)
-..|.++||| +-+..|..||.+|=.
T Consensus 147 ~~~g~~~iIDLDLsrYd~ia~Rf~~~~~ 174 (183)
T PF06956_consen 147 GGAGTYEIIDLDLSRYDAIASRFAQEQQ 174 (183)
T ss_pred CCCCcEEEEeccccchHHHHHHHHHHHH
Confidence 3468999999 557789999988743
No 36
>KOG3564|consensus
Probab=20.06 E-value=1.1e+02 Score=28.02 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhc
Q psy17759 59 RERFDAEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 59 RERFdaEMrkMEEEM~kFRselmn 82 (100)
.+|.+|||+|.+++++|=+-++-.
T Consensus 44 ~~r~~ae~~~~~~~L~Ka~tk~~~ 67 (604)
T KOG3564|consen 44 WKRTDAELGKYKDLLAKAETKRSA 67 (604)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhhh
Confidence 357789999999999998776543
Done!