Query psy17759
Match_columns 100
No_of_seqs 18 out of 20
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 22:08:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bol_A TSP36, small heat shock 98.2 6.5E-07 2.2E-11 69.4 2.2 39 47-85 16-62 (314)
2 2np0_B Synaptotagmin-2; botuli 78.1 0.94 3.2E-05 24.1 1.3 19 52-70 5-23 (26)
3 3bas_A Myosin heavy chain, str 55.8 9.6 0.00033 24.3 2.9 22 61-82 11-32 (89)
4 2fxo_A Myosin heavy chain, car 45.1 15 0.00053 24.4 2.7 22 61-82 10-31 (129)
5 3pbf_A Pulmonary surfactant-as 43.1 22 0.00076 22.0 3.0 24 57-80 2-25 (148)
6 3dd7_B PHD, prevent HOST death 36.6 14 0.00047 19.7 1.1 19 51-69 2-20 (23)
7 2l5g_B Putative uncharacterize 29.6 65 0.0022 19.3 3.4 23 60-82 12-34 (42)
8 1lq7_A Alpha3W; three helix bu 28.6 29 0.00098 22.5 1.8 14 62-75 53-66 (67)
9 2bzw_B BCL2-antagonist of cell 27.8 48 0.0017 18.4 2.4 16 59-74 8-23 (27)
10 3ga8_A HTH-type transcriptiona 27.6 51 0.0018 19.7 2.8 18 63-80 49-66 (78)
11 3h4c_A Transcription factor TF 27.3 20 0.00068 28.4 1.1 45 37-82 70-117 (260)
12 4dac_A Computationally designe 27.2 73 0.0025 17.7 3.1 20 61-80 5-24 (28)
13 1zme_C Proline utilization tra 26.9 78 0.0027 17.7 3.4 23 60-82 47-69 (70)
14 3ram_A HMRA protein; two-domai 22.8 83 0.0028 23.1 3.6 28 58-85 3-30 (394)
15 3io1_A Aminobenzoyl-glutamate 22.1 41 0.0014 25.2 1.9 28 58-85 1-28 (445)
16 2zvf_A Alanyl-tRNA synthetase; 22.1 93 0.0032 20.3 3.4 26 59-84 34-59 (171)
17 3vp9_A General transcriptional 21.8 47 0.0016 22.3 1.9 16 69-84 73-88 (92)
18 1wt6_A Myotonin-protein kinase 21.6 50 0.0017 22.0 2.0 16 62-77 57-72 (81)
No 1
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=98.15 E-value=6.5e-07 Score=69.40 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=36.0
Q ss_pred CceeecccccchH--------HHHHHHHHhhHHHHHHHHHHhhcccc
Q psy17759 47 DFSVIDSEFSNIR--------ERFDAEMRKMEDEMTKFRSELMNRES 85 (100)
Q Consensus 47 d~SViD~EFssiR--------ERFdaEMrkMEEEM~kFRselmnrEs 85 (100)
.+|+||++|++|+ ++|+++|++|++||.++|+++++.+.
T Consensus 16 ~~~~~d~~f~~~~~~~~~~~~~w~~~~~~~~~~e~~rlr~~~~~~~p 62 (314)
T 2bol_A 16 RRSLIDWEFPQMALVPLDQVFDWAERSRQSLHDDIVNMHRNLFSLEP 62 (314)
T ss_dssp HHHHHTCCCGGGGSCCHHHHHHHHHHHHHTHHHHHHHHHHTCBCCEE
T ss_pred cceeecccCCccCcCchhhhhhhhhhhhHhHHHHHHHHHhhhhhcCC
Confidence 6799999999999 99999999999999999999987553
No 2
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=78.07 E-value=0.94 Score=24.12 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.1
Q ss_pred cccccchHHHHHHHHHhhH
Q psy17759 52 DSEFSNIRERFDAEMRKME 70 (100)
Q Consensus 52 D~EFssiRERFdaEMrkME 70 (100)
.+.|+.|+++|-.||+||.
T Consensus 5 ~d~~~~~k~kf~nel~kip 23 (26)
T 2np0_B 5 EDMFAKLKEKFFNEINKXX 23 (26)
T ss_pred chHHHHHHHHHHHHHHhhh
Confidence 4679999999999998774
No 3
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.83 E-value=9.6 Score=24.30 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHHhhHHHHHHHHHHhhc
Q psy17759 61 RFDAEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 61 RFdaEMrkMEEEM~kFRselmn 82 (100)
|.+.||+.+++++.+.+..+..
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k 32 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAK 32 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999998887754
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=45.15 E-value=15 Score=24.42 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhhc
Q psy17759 61 RFDAEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 61 RFdaEMrkMEEEM~kFRselmn 82 (100)
|.+.||+++++++.+.+..+..
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k 31 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEK 31 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999888877754
No 5
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=43.09 E-value=22 Score=22.00 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=20.6
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHh
Q psy17759 57 NIRERFDAEMRKMEDEMTKFRSEL 80 (100)
Q Consensus 57 siRERFdaEMrkMEEEM~kFRsel 80 (100)
+|.|+...++..|++++..+++.+
T Consensus 2 ~~~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 2 YLDEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999887
No 6
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=36.65 E-value=14 Score=19.74 Aligned_cols=19 Identities=26% Similarity=0.649 Sum_probs=16.0
Q ss_pred ecccccchHHHHHHHHHhh
Q psy17759 51 IDSEFSNIRERFDAEMRKM 69 (100)
Q Consensus 51 iD~EFssiRERFdaEMrkM 69 (100)
+|.||-.|=.++..|.+.+
T Consensus 2 lDaEFaaIm~~hg~t~~~L 20 (23)
T 3dd7_B 2 LDAEFASLFDTLDSTNKEM 20 (26)
T ss_pred chhHHHHHHHHHhHHHHHH
Confidence 5889999999999888754
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.65 E-value=65 Score=19.28 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhc
Q psy17759 60 ERFDAEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 60 ERFdaEMrkMEEEM~kFRselmn 82 (100)
+|-|+|+-|.|+.+..++..+-.
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999887654
No 8
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=28.58 E-value=29 Score=22.54 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=6.9
Q ss_pred HHHHHHhhHHHHHH
Q psy17759 62 FDAEMRKMEDEMTK 75 (100)
Q Consensus 62 FdaEMrkMEEEM~k 75 (100)
-+.|.+++|||++|
T Consensus 53 veeevkkleeeikk 66 (67)
T 1lq7_A 53 VEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34455555555543
No 9
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=27.85 E-value=48 Score=18.40 Aligned_cols=16 Identities=38% Similarity=0.802 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhHHHHH
Q psy17759 59 RERFDAEMRKMEDEMT 74 (100)
Q Consensus 59 RERFdaEMrkMEEEM~ 74 (100)
-.|+-.|+|||-+|..
T Consensus 8 A~rYGReLRRMSDEF~ 23 (27)
T 2bzw_B 8 AQRYGRELRRMSDEFE 23 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHH
Confidence 4688899999999865
No 10
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=27.56 E-value=51 Score=19.75 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=15.8
Q ss_pred HHHHHhhHHHHHHHHHHh
Q psy17759 63 DAEMRKMEDEMTKFRSEL 80 (100)
Q Consensus 63 daEMrkMEEEM~kFRsel 80 (100)
.+++++.++.|..|+.+.
T Consensus 49 ~e~~~~~~~~~~~f~~~v 66 (78)
T 3ga8_A 49 KEESDAFMAQVKAFRASV 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678999999999999864
No 11
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=27.32 E-value=20 Score=28.38 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=36.8
Q ss_pred CccccccccCCceeecccccchHHHHHHHHH---hhHHHHHHHHHHhhc
Q psy17759 37 GKRNIPIKLGDFSVIDSEFSNIRERFDAEMR---KMEDEMTKFRSELMN 82 (100)
Q Consensus 37 ~kr~IPIklgd~SViD~EFssiRERFdaEMr---kMEEEM~kFRselmn 82 (100)
.+-+.||.+.+..++|..-+.+.-|- +||= +|+|||.++|..+-+
T Consensus 70 e~~~~PiplaE~r~lD~sL~Dvelrr-~Eiv~~l~l~e~e~rl~~~~~~ 117 (260)
T 3h4c_A 70 EEAQQPLPLAEVRCLDSSLGDVELRR-ADIVRELHLEDSERRLRDTFAD 117 (260)
T ss_dssp HHTTCCCCHHHHHHHCTTCCCHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCCccHHHHHHHhhhhhHHHHHH-HHHHHHccCCHHHHHHHHHhhh
Confidence 45678999999999999999887774 4443 589999999988754
No 12
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=27.22 E-value=73 Score=17.72 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=15.1
Q ss_pred HHHHHHHhhHHHHHHHHHHh
Q psy17759 61 RFDAEMRKMEDEMTKFRSEL 80 (100)
Q Consensus 61 RFdaEMrkMEEEM~kFRsel 80 (100)
+.||-.|++|.|.-|+-.+.
T Consensus 5 kldanvkrlekevgklegev 24 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eccccHHHHHHHHhhhhhhh
Confidence 46788888888888877654
No 13
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.93 E-value=78 Score=17.69 Aligned_cols=23 Identities=9% Similarity=0.414 Sum_probs=18.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhc
Q psy17759 60 ERFDAEMRKMEDEMTKFRSELMN 82 (100)
Q Consensus 60 ERFdaEMrkMEEEM~kFRselmn 82 (100)
+.-++++..+|..+..+++.+-+
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 55678888999999999887754
No 14
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}
Probab=22.79 E-value=83 Score=23.09 Aligned_cols=28 Identities=4% Similarity=0.060 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhhcccc
Q psy17759 58 IRERFDAEMRKMEDEMTKFRSELMNRES 85 (100)
Q Consensus 58 iRERFdaEMrkMEEEM~kFRselmnrEs 85 (100)
|+++..+.+.+.+++|.++|.+|.+..+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~l~~~pe 30 (394)
T 3ram_A 3 EKQQILDYIETNKYSYIEISHRIHERPE 30 (394)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7888999999999999999999988544
No 15
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}
Probab=22.14 E-value=41 Score=25.16 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhhcccc
Q psy17759 58 IRERFDAEMRKMEDEMTKFRSELMNRES 85 (100)
Q Consensus 58 iRERFdaEMrkMEEEM~kFRselmnrEs 85 (100)
|++|.++.++.+++++.++|.+|-+.-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~lh~~Pe 28 (445)
T 3io1_A 1 MSLQLDEYLRQLAPSMTQWRRDFHLHAE 28 (445)
T ss_dssp --CCHHHHHHTTHHHHHHHHHHHHHTCC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4567778889999999999999987543
No 16
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.06 E-value=93 Score=20.31 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhccc
Q psy17759 59 RERFDAEMRKMEDEMTKFRSELMNRE 84 (100)
Q Consensus 59 RERFdaEMrkMEEEM~kFRselmnrE 84 (100)
=+++..|.+.++.|+.+++.++...+
T Consensus 34 v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 34 VERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999887754
No 17
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=21.83 E-value=47 Score=22.27 Aligned_cols=16 Identities=25% Similarity=0.518 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhhccc
Q psy17759 69 MEDEMTKFRSELMNRE 84 (100)
Q Consensus 69 MEEEM~kFRselmnrE 84 (100)
-|||+.++|.+|..+-
T Consensus 73 YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 73 YEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3899999999998753
No 18
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.61 E-value=50 Score=21.99 Aligned_cols=16 Identities=19% Similarity=0.594 Sum_probs=10.6
Q ss_pred HHHHHHhhHHHHHHHH
Q psy17759 62 FDAEMRKMEDEMTKFR 77 (100)
Q Consensus 62 FdaEMrkMEEEM~kFR 77 (100)
..+||++++++|..||
T Consensus 57 L~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 57 LEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777776655
Done!