RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17759
(100 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.28
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 59 RERFDAEMRKMEDEMTKFRSELMNR 83
RE +++++ E +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREK 115
Score = 25.5 bits (55), Expect = 2.8
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 14/42 (33%)
Query: 58 IRERFDAEMRKME-----------DEMTKFRSELM--NRESN 86
++E DA + ME +E + +SE + N+ +N
Sbjct: 98 LQEL-DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular
chaperone; 2.5A {Taenia saginata}
Length = 314
Score = 27.9 bits (61), Expect = 0.61
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFKTSTR 93
+ R+ ++ M + F E N F++ +
Sbjct: 32 LDQVFDWAERSRQSLHDDIVNMHRNL--FSLEPFTAMDNAFESVMK 75
>3di2_A Interleukin-7, IL-7; cytokine, cytokine receptor, ectodomain,
glycoprotein, growth factor, secreted; HET: 1PE; 2.70A
{Homo sapiens} PDB: 3di3_A*
Length = 154
Score = 25.3 bits (54), Expect = 3.3
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 45 LGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFK 89
+GD + + + ++ D M + S +N E NFFK
Sbjct: 1 MGDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCLNNEFNFFK 45
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.6 bits (55), Expect = 3.5
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 29 CLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFF 88
L ++ +G N K ++ R A+M+KME EM + + +
Sbjct: 294 KLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKL 353
Query: 89 K 89
K
Sbjct: 354 K 354
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein protein; HET: NAG BMA
MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 25.4 bits (55), Expect = 4.0
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMEDEMT 74
F I+ EFS + R + +ED
Sbjct: 384 FHQIEKEFSEVEGRIQDLEKYVEDTKI 410
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 25.4 bits (55), Expect = 4.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMEDEMT 74
F + EFSN+ R + +KMED
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFL 429
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 4.9
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 20 DFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMED-----EMT 74
DF + ++ S A + +I L + +++ + + D E
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 75 KFRSE--------LMNRESNFFKTSTRCV 95
S+ LM + F+ + + V
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 24.8 bits (53), Expect = 7.7
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 5 FYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDA 64
F V+ +C V D P+ L+ ++ + S F
Sbjct: 25 FEDAFVDNFDCKDVQDM----PKSILSKE----------EIDHIIMSKDAVSGTLRLFWT 70
Query: 65 EMRKMEDEMTKFRSELMNRESNFFKTSTRCVP 96
+ K E+ + KF E++ F + +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 25.0 bits (55), Expect = 5.0
Identities = 6/67 (8%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 16 LSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTK 75
++ + ++ + K ++ I F + + + + E +D++
Sbjct: 490 HTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIE--KENEMLAQDKLVA 547
Query: 76 FRSELMN 82
+ N
Sbjct: 548 ETEDRKN 554
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST
cell membrane, HOST membrane, membrane, transmembrane,
viral protein; HET: NAG; 2.60A {Influenza a virus} PDB:
3m5h_B* 3m5i_B* 3m5j_B*
Length = 182
Score = 24.6 bits (53), Expect = 6.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMEDEMT 74
F +ID+EF+ I ++ + D MT
Sbjct: 63 FELIDNEFNEIEQQIGNVINWTRDAMT 89
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion
protein, protein, viral protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B*
3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B*
1jso_B* 2fk0_B* 3fku_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B*
3lzf_B* 3r2x_B* 3sm5_B* ...
Length = 174
Score = 24.6 bits (53), Expect = 6.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMEDEMT 74
F + EFSN+ R + +KMED
Sbjct: 63 FEAVGKEFSNLERRLENLNKKMEDGFL 89
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Length = 176
Score = 24.2 bits (52), Expect = 8.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMEDEMT 74
+ +ID EFS I R + K++D++
Sbjct: 63 YGIIDHEFSEIETRLNMINNKIDDQIQ 89
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 24.4 bits (53), Expect = 8.4
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 13/45 (28%)
Query: 45 LGDFSVIDSEF-------------SNIRERFDAEMRKMEDEMTKF 76
L F V +S+ IRER A + +++ KF
Sbjct: 57 LVQFGVTESKLTINNGIMAGYINTDGIRERLFAFLDPDKNDEDKF 101
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor
specificity, envelope Pro fusion protein, membrane,
transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL
NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB:
2rfu_B* 3bt6_B*
Length = 176
Score = 24.2 bits (52), Expect = 8.8
Identities = 2/27 (7%), Positives = 6/27 (22%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMEDEMT 74
+ + K++D
Sbjct: 63 LQRLSGAMDELHNEILELDEKVDDLRA 89
>2viu_B Hemagglutinin; envelope protein, glycoprotein; HET: NAG BMA;
2.50A {Unidentified influenza virus} SCOP: h.3.1.1 PDB:
1eo8_B* 1hgd_B* 1hgf_B* 1hgg_B* 1hgh_B* 1hgi_B* 1hgj_B*
1ken_B* 1qfu_B* 2hmg_B* 1hge_B* 3hmg_B* 3ztj_B* 4hmg_B*
5hmg_B* 3sdy_B* 3eym_B* 3eyk_B* 3eyj_B* 1ti8_B* ...
Length = 175
Score = 24.2 bits (52), Expect = 9.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 48 FSVIDSEFSNIRERFDAEMRKMEDEMT 74
F I+ EFS + R + +ED
Sbjct: 63 FHQIEKEFSEVEGRIQDLEKYVEDTKI 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.387
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,432,792
Number of extensions: 70481
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 26
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.9 bits)