RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17759
         (100 letters)



>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 268

 Score = 25.4 bits (55), Expect = 1.2
 Identities = 5/74 (6%), Positives = 27/74 (36%)

Query: 5   FYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDA 64
             +  ++ ++ +++ +    + +  ++      +          + I +   N+R   D+
Sbjct: 178 CALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDS 237

Query: 65  EMRKMEDEMTKFRS 78
           ++  M+  +     
Sbjct: 238 DIETMQQTIEDLEV 251


>d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C
           {Haemophilus ducreyi [TaxId: 730]}
          Length = 154

 Score = 23.7 bits (51), Expect = 4.1
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 3/43 (6%)

Query: 2   NAKFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIK 44
              F IK   +  C++  DF  +    C         R   + 
Sbjct: 98  TGAFLIKDALLGFCITSHDFDDLKLEPCGG---SVSGRTFSLA 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,304
Number of extensions: 13462
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 9
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.6 bits)