BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17760
         (105 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WRF|A Chain A, Structure Of H2 Avian Jena Hemagglutinin With Human
           Receptor
 pdb|2WRF|B Chain B, Structure Of H2 Avian Jena Hemagglutinin With Human
           Receptor
 pdb|2WRF|C Chain C, Structure Of H2 Avian Jena Hemagglutinin With Human
           Receptor
 pdb|2WRF|D Chain D, Structure Of H2 Avian Jena Hemagglutinin With Human
           Receptor
 pdb|2WRF|E Chain E, Structure Of H2 Avian Jena Hemagglutinin With Human
           Receptor
 pdb|2WRF|F Chain F, Structure Of H2 Avian Jena Hemagglutinin With Human
           Receptor
 pdb|2WRF|G Chain G, Structure Of H2 Avian Jena Hemagglutinin With Human
           Receptor
 pdb|2WRF|H Chain H, Structure Of H2 Avian Jena Hemagglutinin With Human
           Receptor
 pdb|2WRF|I Chain I, Structure Of H2 Avian Jena Hemagglutinin With Human
           Receptor
          Length = 507

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 53  FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 86
           F  +  EFSN+ +R +   +KMED   ++  + +EL+
Sbjct: 403 FEAVGKEFSNLEKRLENLNKKMEDGFLDVWTYNAELL 439


>pdb|2WRE|A Chain A, Structure Of H2 Japan Hemagglutinin With Human Receptor
 pdb|2WRE|B Chain B, Structure Of H2 Japan Hemagglutinin With Human Receptor
 pdb|2WRE|C Chain C, Structure Of H2 Japan Hemagglutinin With Human Receptor
          Length = 505

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 53  FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 86
           F  +  EFSN+  R +   +KMED   ++  + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439


>pdb|2WR3|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
           Avian Receptor
 pdb|2WR3|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
           Avian Receptor
 pdb|2WR3|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
           Avian Receptor
 pdb|2WR4|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin 
           With Human Receptor
 pdb|2WR4|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin 
           With Human Receptor
 pdb|2WR4|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin 
           With Human Receptor
 pdb|2WR5|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
 pdb|2WR5|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
 pdb|2WR5|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
          Length = 507

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 53  FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 86
           F  +  EFSN+  R +   +KMED   ++  + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439


>pdb|2WRD|A Chain A, Structure Of H2 Japan Hemagglutinin
 pdb|2WRD|B Chain B, Structure Of H2 Japan Hemagglutinin
 pdb|2WRD|C Chain C, Structure Of H2 Japan Hemagglutinin
          Length = 505

 Score = 26.6 bits (57), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 53  FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 86
           F  +  EFSN+  R +   +KMED   ++  + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439


>pdb|2WR7|A Chain A, The Structure Of Influenza H2 Human Singapore
           Hemagglutinin With Human Receptor
 pdb|2WR7|B Chain B, The Structure Of Influenza H2 Human Singapore
           Hemagglutinin With Human Receptor
 pdb|2WR7|C Chain C, The Structure Of Influenza H2 Human Singapore
           Hemagglutinin With Human Receptor
 pdb|2WRB|A Chain A, The Structure Of Influenza H2 Human Singapore
           Hemagglutinin With Avian Receptor
 pdb|2WRB|B Chain B, The Structure Of Influenza H2 Human Singapore
           Hemagglutinin With Avian Receptor
 pdb|2WRB|C Chain C, The Structure Of Influenza H2 Human Singapore
           Hemagglutinin With Avian Receptor
 pdb|2WRC|A Chain A, The Structure Of Influenza H2 Human Singapore
           Hemagglutinin
 pdb|2WRC|B Chain B, The Structure Of Influenza H2 Human Singapore
           Hemagglutinin
 pdb|2WRC|C Chain C, The Structure Of Influenza H2 Human Singapore
           Hemagglutinin
          Length = 506

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 53  FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 86
           F  +  EFSN+  R +   +KMED   ++  + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439


>pdb|2WR0|A Chain A, Structures Of Influenza  H2 Hemagglutinins
 pdb|2WR0|B Chain B, Structures Of Influenza  H2 Hemagglutinins
 pdb|2WR0|C Chain C, Structures Of Influenza  H2 Hemagglutinins
 pdb|2WR1|A Chain A, Structure Of Influenza H2 Hemagglutinin With Human
           Receptor
 pdb|2WR1|B Chain B, Structure Of Influenza H2 Hemagglutinin With Human
           Receptor
 pdb|2WR1|C Chain C, Structure Of Influenza H2 Hemagglutinin With Human
           Receptor
 pdb|2WR2|A Chain A, Structure Of Influenza H2 Avian Hemagglutinin With Avian
           Receptor
 pdb|2WR2|B Chain B, Structure Of Influenza H2 Avian Hemagglutinin With Avian
           Receptor
 pdb|2WR2|C Chain C, Structure Of Influenza H2 Avian Hemagglutinin With Avian
           Receptor
          Length = 509

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 53  FSVIDSEFSNIRERFDAEMRKMED---EMTKFRSELM 86
           F  +  EFSN+  R +   +KMED   ++  + +EL+
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELL 439


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,527,083
Number of Sequences: 62578
Number of extensions: 82430
Number of successful extensions: 329
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 9
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)