BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17760
         (105 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O17405|PLDL_CAEEL Probable phospholipase D F09G2.8 OS=Caenorhabditis elegans
           GN=F09G2.8 PE=1 SV=2
          Length = 554

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3   NIMKNAKFYIKVVEVRECLSVSDF-SSVFPRLCLTSMADSGKRNIPIKLG 51
           NI+ N+K Y+ +  +   L+ SD+ SSV+ R    ++  +GKR + I++ 
Sbjct: 189 NIIDNSKQYLDISVMYWNLNTSDYKSSVYGRRVYEAIIRAGKRGVKIRIA 238


>sp|E2R1I5|CCD39_CANFA Coiled-coil domain-containing protein 39 OS=Canis familiaris
           GN=CCDC39 PE=3 SV=1
          Length = 939

 Score = 30.4 bits (67), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 66  RFDAEMRKMEDEMTKFRSELMNRESNFFKTSTR 98
           R   E++++E+EMT  R +  ++E+N FKT+ +
Sbjct: 96  RIKDEIQRLENEMTSIREKKSDKENNIFKTTQK 128


>sp|Q6DW76|DGDG1_SOYBN Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine
          max GN=DGD1 PE=2 SV=1
          Length = 783

 Score = 30.0 bits (66), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 47 PIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFR--SELMNRE-SNFFKTST 97
          P     FS I   +  +R+  DA++R M D    F+  +   +RE  NFF ++T
Sbjct: 8  PTSSNAFSFISKGWREVRDSADADLRLMRDRANSFKDLATSFDRELENFFNSAT 61


>sp|O60861|GAS7_HUMAN Growth arrest-specific protein 7 OS=Homo sapiens GN=GAS7 PE=1 SV=3
          Length = 476

 Score = 29.3 bits (64), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 37  SMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFK 94
           S+AD  + ++       S ++    N RE F  +M+K +  +   R +L +R ++  K
Sbjct: 281 SLADEAEVHLKFSAKLHSEVEKPLMNFRENFKKDMKKCDHHIADLRKQLASRYASVEK 338


>sp|Q45VK7|DYHC2_MOUSE Cytoplasmic dynein 2 heavy chain 1 OS=Mus musculus GN=Dync2h1 PE=1
            SV=1
          Length = 4306

 Score = 28.9 bits (63), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 39   ADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSEL 85
            ADS  + I + + D S   +E   +++R   E+ K+E+  +K   EL
Sbjct: 2931 ADSALQEITVSMQDASEQKTELERLKQRIAEEVVKIEERKSKIDDEL 2977


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,590,168
Number of Sequences: 539616
Number of extensions: 1082099
Number of successful extensions: 5019
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5015
Number of HSP's gapped (non-prelim): 13
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)