Query psy17760
Match_columns 105
No_of_seqs 18 out of 20
Neff 1.7
Searched_HMMs 46136
Date Fri Aug 16 22:10:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08826 DMPK_coil: DMPK coile 56.4 13 0.00029 24.2 2.6 18 67-84 44-61 (61)
2 PF04201 TPD52: Tumour protein 55.1 15 0.00033 28.2 3.1 27 64-90 31-57 (162)
3 PF09730 BicD: Microtubule-ass 50.6 15 0.00032 33.5 2.8 30 58-87 622-651 (717)
4 PF14689 SPOB_a: Sensor_kinase 50.1 21 0.00046 22.2 2.7 26 63-88 1-26 (62)
5 PF03763 Remorin_C: Remorin, C 48.3 26 0.00056 24.7 3.2 29 60-88 35-63 (111)
6 PF11559 ADIP: Afadin- and alp 45.8 32 0.0007 23.8 3.4 28 59-86 123-150 (151)
7 PF01920 Prefoldin_2: Prefoldi 40.7 87 0.0019 19.7 4.5 44 42-86 43-86 (106)
8 PF10260 SAYSvFN: Uncharacteri 39.7 14 0.0003 24.9 0.7 26 47-72 41-71 (71)
9 PF08581 Tup_N: Tup N-terminal 39.7 23 0.0005 23.9 1.8 14 75-88 63-76 (79)
10 KOG0999|consensus 36.8 34 0.00074 31.9 3.0 30 58-87 637-666 (772)
11 PF04538 BEX: Brain expressed 36.4 43 0.00093 23.5 2.8 22 63-86 66-87 (100)
12 KOG3189|consensus 35.7 39 0.00085 27.9 2.9 25 30-57 104-128 (252)
13 PF05582 Peptidase_U57: YabG p 32.1 65 0.0014 26.8 3.6 67 9-86 15-81 (287)
14 PF08172 CASP_C: CASP C termin 31.1 67 0.0015 25.3 3.4 24 61-84 85-108 (248)
15 PF05890 Ebp2: Eukaryotic rRNA 27.7 41 0.00089 26.9 1.7 23 67-89 109-131 (271)
16 COG5132 BUD31 Cell cycle contr 27.3 29 0.00063 26.7 0.8 22 58-79 14-38 (146)
17 PF13348 Y_phosphatase3C: Tyro 26.9 32 0.00069 20.8 0.8 34 53-86 35-68 (68)
18 PF05308 Mito_fiss_reg: Mitoch 26.5 69 0.0015 25.5 2.8 19 69-87 119-140 (253)
19 smart00595 MADF subfamily of S 26.0 56 0.0012 20.1 1.8 22 57-78 45-66 (89)
20 PF02096 60KD_IMP: 60Kd inner 25.7 93 0.002 22.1 3.1 27 58-84 37-63 (198)
21 PF09340 NuA4: Histone acetylt 25.1 45 0.00098 22.1 1.3 27 72-98 12-38 (80)
22 KOG3866|consensus 23.9 64 0.0014 28.4 2.3 19 69-87 285-303 (442)
23 cd08049 TAF8 TATA Binding Prot 23.8 1.1E+02 0.0023 18.8 2.7 29 55-83 24-52 (54)
24 PF13801 Metal_resist: Heavy-m 23.3 1.3E+02 0.0029 18.2 3.1 29 59-87 49-77 (125)
25 PF10406 TAF8_C: Transcription 22.8 1.1E+02 0.0023 18.8 2.6 27 55-81 24-50 (51)
26 cd00890 Prefoldin Prefoldin is 22.7 2E+02 0.0044 18.6 4.1 26 43-69 68-94 (129)
27 KOG0894|consensus 22.7 35 0.00076 28.1 0.5 22 16-37 83-106 (244)
28 PF13864 Enkurin: Calmodulin-b 22.3 1.1E+02 0.0024 20.3 2.8 22 62-83 74-95 (98)
29 PF09551 Spore_II_R: Stage II 22.1 27 0.00058 25.7 -0.2 15 26-40 114-128 (130)
30 PF14988 DUF4515: Domain of un 21.8 1E+02 0.0022 23.6 2.8 27 59-85 75-101 (206)
31 COG2216 KdpB High-affinity K+ 20.8 55 0.0012 30.3 1.4 17 57-74 446-462 (681)
32 PRK05729 valS valyl-tRNA synth 20.4 93 0.002 27.8 2.7 28 60-87 809-836 (874)
No 1
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.44 E-value=13 Score=24.19 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=14.1
Q ss_pred HHHHHHhhHHHHHHHHHH
Q psy17760 67 FDAEMRKMEDEMTKFRSE 84 (105)
Q Consensus 67 FdaEMrkMEEEM~kFRse 84 (105)
+.+||++++++|..+|++
T Consensus 44 L~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 44 LEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 678999999999998874
No 2
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=55.14 E-value=15 Score=28.20 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccc
Q psy17760 64 RERFDAEMRKMEDEMTKFRSELMNRES 90 (105)
Q Consensus 64 RERFdaEMrkMEEEM~kFRselmnrEs 90 (105)
||...+|+.|+|||+.-+|.-|.-+|.
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer 57 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKER 57 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999988774
No 3
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=50.58 E-value=15 Score=33.51 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=26.9
Q ss_pred ccccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17760 58 SEFSNIRERFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 58 ~EFssiRERFdaEMrkMEEEM~kFRselmn 87 (105)
.+-+|+|.+|+.|=.=+.|.|.|+|+||--
T Consensus 622 vALanLKsKYE~EK~~v~etm~kLRnELK~ 651 (717)
T PF09730_consen 622 VALANLKSKYENEKAMVSETMMKLRNELKA 651 (717)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 456899999999999999999999999943
No 4
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.12 E-value=21 Score=22.18 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhhcc
Q psy17760 63 IRERFDAEMRKMEDEMTKFRSELMNR 88 (105)
Q Consensus 63 iRERFdaEMrkMEEEM~kFRselmnr 88 (105)
|..+.-.+++.+-+.+.+.|.+++|+
T Consensus 1 ~~~~~~~~~~~~~~~lR~~RHD~~Nh 26 (62)
T PF14689_consen 1 MTKQQLEELEELIDSLRAQRHDFLNH 26 (62)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhHHHHHH
Confidence 45667788899999999999999985
No 5
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=48.29 E-value=26 Score=24.70 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHhhHHHHHHHHHHhhcc
Q psy17760 60 FSNIRERFDAEMRKMEDEMTKFRSELMNR 88 (105)
Q Consensus 60 FssiRERFdaEMrkMEEEM~kFRselmnr 88 (105)
=+.-+-..+++|+++|..+.+-|+..+++
T Consensus 35 En~qkaKaea~m~k~E~klEkkra~a~ek 63 (111)
T PF03763_consen 35 ENLQKAKAEAEMRKIEEKLEKKRAKALEK 63 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788999999999999999887763
No 6
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.78 E-value=32 Score=23.81 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=24.0
Q ss_pred cccchHHHHHHHHHhhHHHHHHHHHHhh
Q psy17760 59 EFSNIRERFDAEMRKMEDEMTKFRSELM 86 (105)
Q Consensus 59 EFssiRERFdaEMrkMEEEM~kFRselm 86 (105)
-..+++-.+..||||-|-|+.++...|-
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457788999999999999999998763
No 7
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.75 E-value=87 Score=19.65 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=31.3
Q ss_pred CccccccccCCceeecccccchHHHHHHHHHhhHHHHHHHHHHhh
Q psy17760 42 GKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELM 86 (105)
Q Consensus 42 ~kr~IPIklgd~SViD~EFssiRERFdaEMrkMEEEM~kFRselm 86 (105)
+.+.+...+|+.-|.- .-..+.+.-...+..+++++.++...+-
T Consensus 43 ~~~~~y~~vG~~fv~~-~~~~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 43 DDRKVYKSVGKMFVKQ-DKEEAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp TT-EEEEEETTEEEEE-EHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999987776 4567777777777777777777766553
No 8
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=39.73 E-value=14 Score=24.92 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=20.6
Q ss_pred ccccCCceeecccccch-----HHHHHHHHH
Q psy17760 47 PIKLGDFSVIDSEFSNI-----RERFDAEMR 72 (105)
Q Consensus 47 PIklgd~SViD~EFssi-----RERFdaEMr 72 (105)
|=+++-|||+...|.+| -|+||.|||
T Consensus 41 ~ge~SAYSVFN~~~~~i~Gtl~aE~~ereir 71 (71)
T PF10260_consen 41 PGELSAYSVFNKGCERIPGTLTAEQFEREIR 71 (71)
T ss_pred CCCccchhhhCCCccccCCCCCHHHHHHhhC
Confidence 44588899999999887 478888775
No 9
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=39.72 E-value=23 Score=23.89 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhcc
Q psy17760 75 EDEMTKFRSELMNR 88 (105)
Q Consensus 75 EEEM~kFRselmnr 88 (105)
|||+.++|.+|.++
T Consensus 63 EeEI~rLr~eLe~r 76 (79)
T PF08581_consen 63 EEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhh
Confidence 77788888888664
No 10
>KOG0999|consensus
Probab=36.84 E-value=34 Score=31.91 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=27.2
Q ss_pred ccccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17760 58 SEFSNIRERFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 58 ~EFssiRERFdaEMrkMEEEM~kFRselmn 87 (105)
...+|||++++.|=.-|=|-|.|+|+||-.
T Consensus 637 valtnlksKYEnEK~mvtetm~KlRnELk~ 666 (772)
T KOG0999|consen 637 VALTNLKSKYENEKAMVTETMDKLRNELKA 666 (772)
T ss_pred HHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999976
No 11
>PF04538 BEX: Brain expressed X-linked like family ; InterPro: IPR021156 This entry includes the human p75NTR-associated cell death executor (Nerve growth factor receptor associated protein 1), which may be a signalling adaptor molecule involved in p75NTR-apoptosis induced by nerve growth factor. It may be important in neurogenetic diseases. The proteins are also annotated as Brain expressed X-linked like (BEX), which is a signalling adapter molecule involved in p75NTR-mediated apoptosis induced by NGF, which plays an role in zinc-triggered neuronal death.
Probab=36.36 E-value=43 Score=23.53 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhh
Q psy17760 63 IRERFDAEMRKMEDEMTKFRSELM 86 (105)
Q Consensus 63 iRERFdaEMrkMEEEM~kFRselm 86 (105)
||+ ..+|.|+.|||.+.|..|.
T Consensus 66 ~r~--~ddmeR~~eE~R~~r~Kl~ 87 (100)
T PF04538_consen 66 IRE--GDDMERFMEEMRKLRQKLR 87 (100)
T ss_pred hHh--hhhHHHHHHHHHHHHHHhc
Confidence 676 5688888888888888775
No 12
>KOG3189|consensus
Probab=35.71 E-value=39 Score=27.92 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=19.1
Q ss_pred hhhhhhhhhcccCccccccccCCceeec
Q psy17760 30 FPRLCLTSMADSGKRNIPIKLGDFSVID 57 (105)
Q Consensus 30 ~~~~~~~~Ma~~~kr~IPIklgd~SViD 57 (105)
+-..||.-|| ..++|||.|.|-=+-
T Consensus 104 liNF~LrYls---didlPiKRGtFiEFR 128 (252)
T KOG3189|consen 104 LINFCLRYLS---DIDLPIKRGTFIEFR 128 (252)
T ss_pred HHHHHHHHHH---hcCCcccccceEEec
Confidence 3456899997 478999999986443
No 13
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=32.08 E-value=65 Score=26.79 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=42.0
Q ss_pred eeeEEEEEEeecccccccccchhhhhhhhhcccCccccccccCCceeecccccchHHHHHHHHHhhHHHHHHHHHHhh
Q psy17760 9 KFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELM 86 (105)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ma~~~kr~IPIklgd~SViD~EFssiRERFdaEMrkMEEEM~kFRselm 86 (105)
..+.||+++.+.-. .=.-+.--+.+--+||++ +.|+.++|.+- ++++=..+++++++-|.+++.+-.
T Consensus 15 DI~FrIidI~~~~g--~~~aiLkG~d~RLiADAP-------~~DL~~v~~~e--~~~~~~~~~~~~~~~~~~~~~~r~ 81 (287)
T PF05582_consen 15 DILFRIIDIKEENG--KKIAILKGLDMRLIADAP-------LDDLVKVDEEE--VREYEKRFNEKVNESLRRIRQDRK 81 (287)
T ss_pred ceEEEEEEEEcCCC--ceEEEEeCCceEEEecCC-------HHHcccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888877111 001112222333368877 77888888753 455555678899999999998876
No 14
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.11 E-value=67 Score=25.32 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHhhHHHHHHHHHH
Q psy17760 61 SNIRERFDAEMRKMEDEMTKFRSE 84 (105)
Q Consensus 61 ssiRERFdaEMrkMEEEM~kFRse 84 (105)
++=||||-+-...+|+|+.+...+
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~ 108 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQT 108 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445999976666666665554443
No 15
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=27.70 E-value=41 Score=26.88 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.7
Q ss_pred HHHHHHhhHHHHHHHHHHhhccc
Q psy17760 67 FDAEMRKMEDEMTKFRSELMNRE 89 (105)
Q Consensus 67 FdaEMrkMEEEM~kFRselmnrE 89 (105)
|-|||=|=++-|.|.|..|+..+
T Consensus 109 YfAEMvKSD~HM~KVr~kLl~~~ 131 (271)
T PF05890_consen 109 YFAEMVKSDEHMEKVRQKLLKEQ 131 (271)
T ss_pred chHHHhcCHHHHHHHHHHHHHHH
Confidence 56999999999999999999854
No 16
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=27.34 E-value=29 Score=26.68 Aligned_cols=22 Identities=45% Similarity=0.762 Sum_probs=17.5
Q ss_pred ccccchH---HHHHHHHHhhHHHHH
Q psy17760 58 SEFSNIR---ERFDAEMRKMEDEMT 79 (105)
Q Consensus 58 ~EFssiR---ERFdaEMrkMEEEM~ 79 (105)
++|..|| +.|++|||..|..|.
T Consensus 14 dgFeki~ptL~~fe~~mRqaen~~~ 38 (146)
T COG5132 14 DGFEKIRPTLEKFEAEMRQAENAPL 38 (146)
T ss_pred cchhhhcchHHHHHHHHHHHhcCCC
Confidence 5676666 789999999998764
No 17
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=26.90 E-value=32 Score=20.78 Aligned_cols=34 Identities=18% Similarity=0.517 Sum_probs=25.4
Q ss_pred ceeecccccchHHHHHHHHHhhHHHHHHHHHHhh
Q psy17760 53 FSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELM 86 (105)
Q Consensus 53 ~SViD~EFssiRERFdaEMrkMEEEM~kFRselm 86 (105)
+..|+..|||+..=+.+++.==+++..++|..++
T Consensus 35 l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~lL 68 (68)
T PF13348_consen 35 LDAIDERYGSVENYLREELGLSEEDIERLRERLL 68 (68)
T ss_dssp HHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHcC
Confidence 4567888999888888888888889999998764
No 18
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=26.53 E-value=69 Score=25.50 Aligned_cols=19 Identities=32% Similarity=0.772 Sum_probs=15.1
Q ss_pred HHHHh---hHHHHHHHHHHhhc
Q psy17760 69 AEMRK---MEDEMTKFRSELMN 87 (105)
Q Consensus 69 aEMrk---MEEEM~kFRselmn 87 (105)
+-++| +|+|++++|+++-.
T Consensus 119 ~AlqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44566 89999999999743
No 19
>smart00595 MADF subfamily of SANT domain.
Probab=25.96 E-value=56 Score=20.12 Aligned_cols=22 Identities=18% Similarity=0.665 Sum_probs=18.0
Q ss_pred cccccchHHHHHHHHHhhHHHH
Q psy17760 57 DSEFSNIRERFDAEMRKMEDEM 78 (105)
Q Consensus 57 D~EFssiRERFdaEMrkMEEEM 78 (105)
=.-+.+||.+|..|++++....
T Consensus 45 ~~kw~~LR~~y~~e~~r~~~~~ 66 (89)
T smart00595 45 KKRWKNLRDRYRRELKRLQNGK 66 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3568899999999999987654
No 20
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=25.66 E-value=93 Score=22.09 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=21.5
Q ss_pred ccccchHHHHHHHHHhhHHHHHHHHHH
Q psy17760 58 SEFSNIRERFDAEMRKMEDEMTKFRSE 84 (105)
Q Consensus 58 ~EFssiRERFdaEMrkMEEEM~kFRse 84 (105)
.|-..|++|+.++++++-+|+.++..+
T Consensus 37 P~l~~i~~k~~~~~~~~~~~~~~l~k~ 63 (198)
T PF02096_consen 37 PELKEIQEKYKEDQQKMQQEMQKLYKK 63 (198)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 444588999988888888888888765
No 21
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=25.12 E-value=45 Score=22.15 Aligned_cols=27 Identities=11% Similarity=0.576 Sum_probs=13.5
Q ss_pred HhhHHHHHHHHHHhhcccccceeccCC
Q psy17760 72 RKMEDEMTKFRSELMNRESNFFKTSTR 98 (105)
Q Consensus 72 rkMEEEM~kFRselmnrEsnfF~~t~~ 98 (105)
+++|++++..-.+.-+.|...+..++.
T Consensus 12 ~~Le~~L~~lE~qIy~~Et~YL~~~~~ 38 (80)
T PF09340_consen 12 KKLEKDLAALEKQIYDKETSYLEDTSP 38 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 344555555555555555555553333
No 22
>KOG3866|consensus
Probab=23.87 E-value=64 Score=28.41 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=16.7
Q ss_pred HHHHhhHHHHHHHHHHhhc
Q psy17760 69 AEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 69 aEMrkMEEEM~kFRselmn 87 (105)
..|+.|||||-|.|.-.|+
T Consensus 285 DDM~EmeEErlRMREHVMk 303 (442)
T KOG3866|consen 285 DDMKEMEEERLRMREHVMK 303 (442)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4699999999999988886
No 23
>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8. The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promo
Probab=23.76 E-value=1.1e+02 Score=18.76 Aligned_cols=29 Identities=14% Similarity=0.322 Sum_probs=25.2
Q ss_pred eecccccchHHHHHHHHHhhHHHHHHHHH
Q psy17760 55 VIDSEFSNIRERFDAEMRKMEDEMTKFRS 83 (105)
Q Consensus 55 ViD~EFssiRERFdaEMrkMEEEM~kFRs 83 (105)
..+++...||++=.+|=|++|+.+.+|-.
T Consensus 24 ~~~~d~~~~r~~~~~~~r~~e~aL~~l~~ 52 (54)
T cd08049 24 ERETDPKKLREELASQRRLAEKALLRLQQ 52 (54)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778899999999999999999988743
No 24
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=23.29 E-value=1.3e+02 Score=18.24 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=21.7
Q ss_pred cccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17760 59 EFSNIRERFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 59 EFssiRERFdaEMrkMEEEM~kFRselmn 87 (105)
++..+.+.|-.+++.+..+|...|.++..
T Consensus 49 ~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ 77 (125)
T PF13801_consen 49 KLRALMDEFRQEMRALRQELRAARQELRA 77 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888888888877643
No 25
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []. The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].
Probab=22.82 E-value=1.1e+02 Score=18.76 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.4
Q ss_pred eecccccchHHHHHHHHHhhHHHHHHH
Q psy17760 55 VIDSEFSNIRERFDAEMRKMEDEMTKF 81 (105)
Q Consensus 55 ViD~EFssiRERFdaEMrkMEEEM~kF 81 (105)
.-+++...+|+|-.+|=|+.|+.+.+|
T Consensus 24 ~~~~d~~~~r~~~~~~~r~~e~aL~~l 50 (51)
T PF10406_consen 24 ERETDPKKIREKAAEQSRLAEKALRKL 50 (51)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 446678899999999999999999876
No 26
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.71 E-value=2e+02 Score=18.60 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=15.7
Q ss_pred ccccccccC-CceeecccccchHHHHHH
Q psy17760 43 KRNIPIKLG-DFSVIDSEFSNIRERFDA 69 (105)
Q Consensus 43 kr~IPIklg-d~SViD~EFssiRERFda 69 (105)
..+|.|.+| ++.|- -....-.+.++.
T Consensus 68 ~~~v~v~iG~~~~ve-~~~~eA~~~l~~ 94 (129)
T cd00890 68 DDKVLVDLGTGVYVE-KSLEEAIEFLKK 94 (129)
T ss_pred CCEEEEEecCCEEEE-ecHHHHHHHHHH
Confidence 557999999 87775 333333344433
No 27
>KOG0894|consensus
Probab=22.69 E-value=35 Score=28.12 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=16.4
Q ss_pred EEeecccccccc--cchhhhhhhh
Q psy17760 16 EVRECLSVSDFS--SVFPRLCLTS 37 (105)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~ 37 (105)
.-|-|||.|||- |.-|-.|..+
T Consensus 83 ntRLCLSiSDfHPdsWNP~WsVSt 106 (244)
T KOG0894|consen 83 NTRLCLSISDFHPDSWNPGWSVST 106 (244)
T ss_pred CceEEEeccccCcCcCCCcccHHH
Confidence 458899999995 6677776543
No 28
>PF13864 Enkurin: Calmodulin-binding
Probab=22.31 E-value=1.1e+02 Score=20.25 Aligned_cols=22 Identities=18% Similarity=0.554 Sum_probs=18.6
Q ss_pred chHHHHHHHHHhhHHHHHHHHH
Q psy17760 62 NIRERFDAEMRKMEDEMTKFRS 83 (105)
Q Consensus 62 siRERFdaEMrkMEEEM~kFRs 83 (105)
+=|+..++||+.+|+.+..|..
T Consensus 74 ~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 74 RRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4478899999999999998853
No 29
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=22.06 E-value=27 Score=25.73 Aligned_cols=15 Identities=27% Similarity=0.851 Sum_probs=11.7
Q ss_pred cccchhhhhhhhhcc
Q psy17760 26 FSSVFPRLCLTSMAD 40 (105)
Q Consensus 26 ~~~~~~~~~~~~Ma~ 40 (105)
+--+||.||.+.++.
T Consensus 114 WCVLfPpLCf~d~~~ 128 (130)
T PF09551_consen 114 WCVLFPPLCFVDATN 128 (130)
T ss_pred EEEecCCceeeeccc
Confidence 345899999998764
No 30
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=21.83 E-value=1e+02 Score=23.56 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=23.5
Q ss_pred cccchHHHHHHHHHhhHHHHHHHHHHh
Q psy17760 59 EFSNIRERFDAEMRKMEDEMTKFRSEL 85 (105)
Q Consensus 59 EFssiRERFdaEMrkMEEEM~kFRsel 85 (105)
+|..+|+.=+.||+.+++|+.+-+.+-
T Consensus 75 ~~~~~k~~qe~eI~~Le~e~~~~~~e~ 101 (206)
T PF14988_consen 75 EFRRLKEQQEREIQTLEEELEKMRAEH 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999877653
No 31
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=20.76 E-value=55 Score=30.34 Aligned_cols=17 Identities=59% Similarity=0.814 Sum_probs=13.2
Q ss_pred cccccchHHHHHHHHHhh
Q psy17760 57 DSEFSNIRERFDAEMRKM 74 (105)
Q Consensus 57 D~EFssiRERFdaEMrkM 74 (105)
|.==..||||| +|+|||
T Consensus 446 DivK~Gi~ERf-~elR~M 462 (681)
T COG2216 446 DIVKPGIKERF-AELRKM 462 (681)
T ss_pred hhcchhHHHHH-HHHHhc
Confidence 44457899999 589988
No 32
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=20.45 E-value=93 Score=27.83 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=20.9
Q ss_pred ccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17760 60 FSNIRERFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 60 FssiRERFdaEMrkMEEEM~kFRselmn 87 (105)
+..-++|...|+.++|.|+.+....|-|
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n 836 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSN 836 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566778888888888888887777765
Done!