Query psy17760
Match_columns 105
No_of_seqs 18 out of 20
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 22:11:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bol_A TSP36, small heat shock 98.1 9.5E-07 3.3E-11 68.9 2.2 39 52-90 16-62 (314)
2 2np0_B Synaptotagmin-2; botuli 75.8 1.2 4.1E-05 23.9 1.3 19 57-75 5-23 (26)
3 3bas_A Myosin heavy chain, str 51.9 12 0.00041 24.0 2.9 22 66-87 11-32 (89)
4 2fxo_A Myosin heavy chain, car 41.1 19 0.00066 24.1 2.7 22 66-87 10-31 (129)
5 3pbf_A Pulmonary surfactant-as 39.9 26 0.0009 21.8 3.0 24 62-85 2-25 (148)
6 3dd7_B PHD, prevent HOST death 35.2 15 0.00051 19.7 1.1 19 56-74 2-20 (23)
7 2l5g_B Putative uncharacterize 28.0 71 0.0024 19.2 3.4 23 65-87 12-34 (42)
8 1lq7_A Alpha3W; three helix bu 25.8 35 0.0012 22.3 1.8 14 67-80 53-66 (67)
9 2bzw_B BCL2-antagonist of cell 25.5 56 0.0019 18.3 2.4 16 64-79 8-23 (27)
10 4dac_A Computationally designe 25.0 84 0.0029 17.6 3.1 20 66-85 5-24 (28)
11 3ga8_A HTH-type transcriptiona 25.0 61 0.0021 19.5 2.8 18 68-85 49-66 (78)
12 3h4c_A Transcription factor TF 24.9 24 0.00084 28.1 1.1 45 42-87 70-117 (260)
13 1zme_C Proline utilization tra 24.5 91 0.0031 17.5 3.4 23 65-87 47-69 (70)
14 3vp9_A General transcriptional 20.8 51 0.0017 22.3 1.9 16 74-89 73-88 (92)
15 3ram_A HMRA protein; two-domai 20.2 1E+02 0.0034 22.8 3.6 28 63-90 3-30 (394)
No 1
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=98.10 E-value=9.5e-07 Score=68.92 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=36.0
Q ss_pred CceeecccccchH--------HHHHHHHHhhHHHHHHHHHHhhcccc
Q psy17760 52 DFSVIDSEFSNIR--------ERFDAEMRKMEDEMTKFRSELMNRES 90 (105)
Q Consensus 52 d~SViD~EFssiR--------ERFdaEMrkMEEEM~kFRselmnrEs 90 (105)
.+|+||+||++|+ ++|+++|++|++||.++|+++++.+.
T Consensus 16 ~~~~~d~~f~~~~~~~~~~~~~w~~~~~~~~~~e~~rlr~~~~~~~p 62 (314)
T 2bol_A 16 RRSLIDWEFPQMALVPLDQVFDWAERSRQSLHDDIVNMHRNLFSLEP 62 (314)
T ss_dssp HHHHHTCCCGGGGSCCHHHHHHHHHHHHHTHHHHHHHHHHTCBCCEE
T ss_pred cceeecccCCccCcCchhhhhhhhhhhhHhHHHHHHHHHhhhhhcCC
Confidence 6799999999999 99999999999999999999987553
No 2
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=75.82 E-value=1.2 Score=23.90 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.1
Q ss_pred cccccchHHHHHHHHHhhH
Q psy17760 57 DSEFSNIRERFDAEMRKME 75 (105)
Q Consensus 57 D~EFssiRERFdaEMrkME 75 (105)
.+.|+.|+++|-.||+||.
T Consensus 5 ~d~~~~~k~kf~nel~kip 23 (26)
T 2np0_B 5 EDMFAKLKEKFFNEINKXX 23 (26)
T ss_pred chHHHHHHHHHHHHHHhhh
Confidence 4679999999999998774
No 3
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.88 E-value=12 Score=23.99 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHHhhHHHHHHHHHHhhc
Q psy17760 66 RFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 66 RFdaEMrkMEEEM~kFRselmn 87 (105)
|.+.||+.+++++.+.+..+..
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k 32 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAK 32 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999998887754
No 4
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.13 E-value=19 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhhc
Q psy17760 66 RFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 66 RFdaEMrkMEEEM~kFRselmn 87 (105)
|.+.||+++++++.+.+..+..
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k 31 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEK 31 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999888877754
No 5
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=39.86 E-value=26 Score=21.78 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=20.6
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHh
Q psy17760 62 NIRERFDAEMRKMEDEMTKFRSEL 85 (105)
Q Consensus 62 siRERFdaEMrkMEEEM~kFRsel 85 (105)
+|.|+...++..|++++..+++.+
T Consensus 2 ~~~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 2 YLDEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999887
No 6
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=35.17 E-value=15 Score=19.73 Aligned_cols=19 Identities=26% Similarity=0.649 Sum_probs=16.0
Q ss_pred ecccccchHHHHHHHHHhh
Q psy17760 56 IDSEFSNIRERFDAEMRKM 74 (105)
Q Consensus 56 iD~EFssiRERFdaEMrkM 74 (105)
+|.||-.|=.++..|.+.+
T Consensus 2 lDaEFaaIm~~hg~t~~~L 20 (23)
T 3dd7_B 2 LDAEFASLFDTLDSTNKEM 20 (26)
T ss_pred chhHHHHHHHHHhHHHHHH
Confidence 5889999999999888754
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.01 E-value=71 Score=19.24 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhc
Q psy17760 65 ERFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 65 ERFdaEMrkMEEEM~kFRselmn 87 (105)
+|-|+|+-|.|+....++..+-.
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999887654
No 8
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=25.75 E-value=35 Score=22.32 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=6.9
Q ss_pred HHHHHHhhHHHHHH
Q psy17760 67 FDAEMRKMEDEMTK 80 (105)
Q Consensus 67 FdaEMrkMEEEM~k 80 (105)
-+.|.+++|||+++
T Consensus 53 veeevkkleeeikk 66 (67)
T 1lq7_A 53 VEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34455555555543
No 9
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=25.49 E-value=56 Score=18.27 Aligned_cols=16 Identities=38% Similarity=0.802 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhHHHHH
Q psy17760 64 RERFDAEMRKMEDEMT 79 (105)
Q Consensus 64 RERFdaEMrkMEEEM~ 79 (105)
-.|+-.|+|||-+|..
T Consensus 8 A~rYGReLRRMSDEF~ 23 (27)
T 2bzw_B 8 AQRYGRELRRMSDEFE 23 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHH
Confidence 4688899999999865
No 10
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=24.98 E-value=84 Score=17.59 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=15.1
Q ss_pred HHHHHHHhhHHHHHHHHHHh
Q psy17760 66 RFDAEMRKMEDEMTKFRSEL 85 (105)
Q Consensus 66 RFdaEMrkMEEEM~kFRsel 85 (105)
+.||-.|++|.|.-|+-.|.
T Consensus 5 kldanvkrlekevgklegev 24 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eccccHHHHHHHHhhhhhhh
Confidence 46788888888888877654
No 11
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=24.95 E-value=61 Score=19.55 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=15.8
Q ss_pred HHHHHhhHHHHHHHHHHh
Q psy17760 68 DAEMRKMEDEMTKFRSEL 85 (105)
Q Consensus 68 daEMrkMEEEM~kFRsel 85 (105)
.+++++.++.|..|+.+.
T Consensus 49 ~e~~~~~~~~~~~f~~~v 66 (78)
T 3ga8_A 49 KEESDAFMAQVKAFRASV 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678999999999999864
No 12
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=24.86 E-value=24 Score=28.07 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=36.7
Q ss_pred CccccccccCCceeecccccchHHHHHHHHH---hhHHHHHHHHHHhhc
Q psy17760 42 GKRNIPIKLGDFSVIDSEFSNIRERFDAEMR---KMEDEMTKFRSELMN 87 (105)
Q Consensus 42 ~kr~IPIklgd~SViD~EFssiRERFdaEMr---kMEEEM~kFRselmn 87 (105)
.+-+.||.+.+..++|..-+.+.-|- +||= +|+|||.++|..+-+
T Consensus 70 e~~~~PiplaE~r~lD~sL~Dvelrr-~Eiv~~l~l~e~e~rl~~~~~~ 117 (260)
T 3h4c_A 70 EEAQQPLPLAEVRCLDSSLGDVELRR-ADIVRELHLEDSERRLRDTFAD 117 (260)
T ss_dssp HHTTCCCCHHHHHHHCTTCCCHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCCccHHHHHHHhhhhhHHHHHH-HHHHHHccCCHHHHHHHHHhhh
Confidence 45578999999999999999887774 4443 589999999988754
No 13
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.50 E-value=91 Score=17.52 Aligned_cols=23 Identities=9% Similarity=0.414 Sum_probs=18.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhc
Q psy17760 65 ERFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 65 ERFdaEMrkMEEEM~kFRselmn 87 (105)
+.-++++..+|+.+..+++.+-+
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 55678888999999999887754
No 14
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=20.77 E-value=51 Score=22.26 Aligned_cols=16 Identities=25% Similarity=0.518 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhhccc
Q psy17760 74 MEDEMTKFRSELMNRE 89 (105)
Q Consensus 74 MEEEM~kFRselmnrE 89 (105)
-|||+.++|.+|..+-
T Consensus 73 YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 73 YEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3899999999998753
No 15
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}
Probab=20.16 E-value=1e+02 Score=22.79 Aligned_cols=28 Identities=4% Similarity=0.060 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhhcccc
Q psy17760 63 IRERFDAEMRKMEDEMTKFRSELMNRES 90 (105)
Q Consensus 63 iRERFdaEMrkMEEEM~kFRselmnrEs 90 (105)
|+++..+.+.+.++++.++|.+|.+..+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~l~~~pe 30 (394)
T 3ram_A 3 EKQQILDYIETNKYSYIEISHRIHERPE 30 (394)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7888999999999999999999988544
Done!