Query psy17760
Match_columns 105
No_of_seqs 18 out of 20
Neff 1.7
Searched_HMMs 13730
Date Fri Aug 16 22:11:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17760.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17760hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wa8a1 a.25.3.1 (A:1-99) ESAT 27.9 25 0.0018 19.9 2.9 30 58-87 48-77 (99)
2 d2elba1 a.238.1.1 (A:6-273) DC 26.7 17 0.0012 23.6 2.2 30 56-85 224-253 (268)
3 d2f66c1 a.2.17.3 (C:142-206) V 20.4 31 0.0022 21.1 2.3 20 62-81 8-27 (65)
4 d1eqfa1 a.29.2.1 (A:1359-1497) 20.3 51 0.0037 20.3 3.5 23 62-84 114-136 (139)
5 d1f5na1 a.114.1.1 (A:284-583) 19.3 30 0.0022 21.9 2.2 23 63-85 278-300 (300)
6 d1wa8b1 a.25.3.1 (B:602-695) E 17.4 54 0.004 18.5 2.9 30 58-87 48-77 (94)
7 d1xppa_ d.74.3.2 (A:) DNA-dire 17.2 34 0.0025 20.4 2.0 30 55-84 69-98 (99)
8 d1yrea1 d.108.1.1 (A:11-193) H 14.7 33 0.0024 20.6 1.4 17 53-69 165-181 (183)
9 d1lwma_ a.21.1.1 (A:) NHP6a {B 13.3 1.1E+02 0.0079 17.3 3.5 22 64-85 71-92 (93)
10 d1pixa2 c.14.1.4 (A:1-287) Glu 12.3 77 0.0056 22.0 3.1 35 51-85 10-44 (287)
No 1
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.92 E-value=25 Score=19.85 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=22.7
Q ss_pred ccccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17760 58 SEFSNIRERFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 58 ~EFssiRERFdaEMrkMEEEM~kFRselmn 87 (105)
+.|...-++++..|.+|.+.+..++..|-.
T Consensus 48 ~af~~~~~~w~~~~~~l~~~L~~i~~~L~~ 77 (99)
T d1wa8a1 48 TAAQAAVVRFQEAANKQKQELDEISTNIRQ 77 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777778888888888888888777654
No 2
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.73 E-value=17 Score=23.58 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=23.3
Q ss_pred ecccccchHHHHHHHHHhhHHHHHHHHHHh
Q psy17760 56 IDSEFSNIRERFDAEMRKMEDEMTKFRSEL 85 (105)
Q Consensus 56 iD~EFssiRERFdaEMrkMEEEM~kFRsel 85 (105)
+......+|..|+.++++|+..|.++...-
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (268)
T d2elba1 224 IGTSVQNVRREMDSDIETMQQTIEDLEVAS 253 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 345677889999999999988888776543
No 3
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.37 E-value=31 Score=21.05 Aligned_cols=20 Identities=10% Similarity=0.587 Sum_probs=16.5
Q ss_pred chHHHHHHHHHhhHHHHHHH
Q psy17760 62 NIRERFDAEMRKMEDEMTKF 81 (105)
Q Consensus 62 siRERFdaEMrkMEEEM~kF 81 (105)
-+|.|..+||++.|+|-.-+
T Consensus 8 ~Lk~kL~~~~~~ld~~s~~l 27 (65)
T d2f66c1 8 ALKKKLEQNTKKLDEESSQL 27 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999986554
No 4
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.30 E-value=51 Score=20.32 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=16.9
Q ss_pred chHHHHHHHHHhhHHHHHHHHHH
Q psy17760 62 NIRERFDAEMRKMEDEMTKFRSE 84 (105)
Q Consensus 62 siRERFdaEMrkMEEEM~kFRse 84 (105)
.|.+.|...++++++++.+....
T Consensus 114 ~L~~~~~~~~~~~~~~~~~~e~~ 136 (139)
T d1eqfa1 114 SMLDLCDEKLKEKEDKLARLEKA 136 (139)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677888888888888766544
No 5
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.33 E-value=30 Score=21.85 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHh
Q psy17760 63 IRERFDAEMRKMEDEMTKFRSEL 85 (105)
Q Consensus 63 iRERFdaEMrkMEEEM~kFRsel 85 (105)
+.++|.++..+++.|+.+++.+|
T Consensus 278 ~~~~~~~~~~~l~~ei~~Lk~~l 300 (300)
T d1f5na1 278 LKEGFQKESRIMKNEIQDLQTKM 300 (300)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45567777777777777776653
No 6
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.42 E-value=54 Score=18.47 Aligned_cols=30 Identities=7% Similarity=0.431 Sum_probs=23.4
Q ss_pred ccccchHHHHHHHHHhhHHHHHHHHHHhhc
Q psy17760 58 SEFSNIRERFDAEMRKMEDEMTKFRSELMN 87 (105)
Q Consensus 58 ~EFssiRERFdaEMrkMEEEM~kFRselmn 87 (105)
+.|....++++..+.+|-+.+..+...+-+
T Consensus 48 ~af~~~~~~W~~~~~~l~~~L~~i~~~l~~ 77 (94)
T d1wa8b1 48 EAYQGVQQKWDATATELNNALQNLARTISE 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888776644
No 7
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=17.23 E-value=34 Score=20.44 Aligned_cols=30 Identities=10% Similarity=0.349 Sum_probs=21.1
Q ss_pred eecccccchHHHHHHHHHhhHHHHHHHHHH
Q psy17760 55 VIDSEFSNIRERFDAEMRKMEDEMTKFRSE 84 (105)
Q Consensus 55 ViD~EFssiRERFdaEMrkMEEEM~kFRse 84 (105)
+|-+....+.+.++.=.+.+++++.+||+.
T Consensus 69 ~l~~a~~~li~~~~~l~~~~~~~~~~~~~~ 98 (99)
T d1xppa_ 69 AIKRAVRKLSKLYEDLGTQFQKEFQRYESD 98 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666667777777777777788888764
No 8
>d1yrea1 d.108.1.1 (A:11-193) Hypothetical protein PA3270 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.67 E-value=33 Score=20.59 Aligned_cols=17 Identities=24% Similarity=0.685 Sum_probs=14.4
Q ss_pred ceeecccccchHHHHHH
Q psy17760 53 FSVIDSEFSNIRERFDA 69 (105)
Q Consensus 53 ~SViD~EFssiRERFda 69 (105)
|+++..|...+|++++|
T Consensus 165 y~l~~~dw~~~k~~~~a 181 (183)
T d1yrea1 165 YSITDHEWPQVKAALEA 181 (183)
T ss_dssp EEEETTTHHHHHHHHHH
T ss_pred EEeEHHHHHHHHHHHhh
Confidence 67888899889988886
No 9
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.28 E-value=1.1e+02 Score=17.29 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHh
Q psy17760 64 RERFDAEMRKMEDEMTKFRSEL 85 (105)
Q Consensus 64 RERFdaEMrkMEEEM~kFRsel 85 (105)
.++...+..+-++||..++..|
T Consensus 71 ~~~a~~~k~~y~~e~~~y~~~l 92 (93)
T d1lwma_ 71 EAKAQADKKRYESEKELYNATL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677778888888888765
No 10
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}
Probab=12.25 E-value=77 Score=22.02 Aligned_cols=35 Identities=11% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCceeecccccchHHHHHHHHHhhHHHHHHHHHHh
Q psy17760 51 GDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSEL 85 (105)
Q Consensus 51 gd~SViD~EFssiRERFdaEMrkMEEEM~kFRsel 85 (105)
.+...+.+++..-.+...+.|+++++++.+.+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 44 (287)
T d1pixa2 10 QNMPQVGKPLKKADAANEEQLKKIEEEIHQLIKEA 44 (287)
T ss_dssp SSCCBCCCCCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555677788888888887766553
Done!