RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17760
(105 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.26
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 64 RERFDAEMRKMEDEMTKFRSELMNR 88
RE +++++ E +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREK 115
Score = 25.9 bits (56), Expect = 2.3
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 14/42 (33%)
Query: 63 IRERFDAEMRKME-----------DEMTKFRSELM--NRESN 91
++E DA + ME +E + +SE + N+ +N
Sbjct: 98 LQEL-DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular
chaperone; 2.5A {Taenia saginata}
Length = 314
Score = 27.9 bits (61), Expect = 0.67
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 53 FSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFKTSTR 98
+ R+ ++ M + F E N F++ +
Sbjct: 32 LDQVFDWAERSRQSLHDDIVNMHRNL--FSLEPFTAMDNAFESVMK 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 0.93
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 15/109 (13%)
Query: 5 MKNAKFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIR 64
+KN + ++ R DF + ++ S A + +I L +
Sbjct: 481 LKNIEHPERMTLFRMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 65 ERFDAEMRKMED-----EMTKFRSE--------LMNRESNFFKTSTRCV 100
+++ + + D E S+ LM + F+ + + V
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 25.2 bits (54), Expect = 5.8
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 16/100 (16%)
Query: 2 KNIMKNAKFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFS 61
K+I+ F V+ +C V D P+ L+ ++ + S
Sbjct: 19 KDILSV--FEDAFVDNFDCKDVQDM----PKSILSKE----------EIDHIIMSKDAVS 62
Query: 62 NIRERFDAEMRKMEDEMTKFRSELMNRESNFFKTSTRCVP 101
F + K E+ + KF E++ F + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
>3di2_A Interleukin-7, IL-7; cytokine, cytokine receptor, ectodomain,
glycoprotein, growth factor, secreted; HET: 1PE; 2.70A
{Homo sapiens} PDB: 3di3_A*
Length = 154
Score = 25.3 bits (54), Expect = 4.4
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 50 LGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFK 94
+GD + + + ++ D M + S +N E NFFK
Sbjct: 1 MGDCDIEGKDGKQYESVLMVSIDQLLDSMKEIGSNCLNNEFNFFK 45
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein protein; HET: NAG BMA
MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 25.4 bits (55), Expect = 4.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 53 FSVIDSEFSNIRERFDAEMRKMEDEMT 79
F I+ EFS + R + +ED
Sbjct: 384 FHQIEKEFSEVEGRIQDLEKYVEDTKI 410
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.2 bits (54), Expect = 4.7
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 34 CLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFF 93
L ++ +G N K ++ R A+M+KME EM + + +
Sbjct: 294 KLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKL 353
Query: 94 K 94
K
Sbjct: 354 K 354
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 25.0 bits (54), Expect = 5.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 53 FSVIDSEFSNIRERFDAEMRKMEDEMT 79
F + EFSN+ R + +KMED
Sbjct: 403 FEAVGKEFSNLERRLENLNKKMEDGFL 429
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 25.0 bits (55), Expect = 5.7
Identities = 6/67 (8%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 21 LSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTK 80
++ + ++ + K ++ I F + + + + E +D++
Sbjct: 490 HTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIE--KENEMLAQDKLVA 547
Query: 81 FRSELMN 87
+ N
Sbjct: 548 ETEDRKN 554
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST
cell membrane, HOST membrane, membrane, transmembrane,
viral protein; HET: NAG; 2.60A {Influenza a virus} PDB:
3m5h_B* 3m5i_B* 3m5j_B*
Length = 182
Score = 24.6 bits (53), Expect = 8.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 53 FSVIDSEFSNIRERFDAEMRKMEDEMT 79
F +ID+EF+ I ++ + D MT
Sbjct: 63 FELIDNEFNEIEQQIGNVINWTRDAMT 89
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion
protein, protein, viral protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B*
3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B*
1jso_B* 2fk0_B* 3fku_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B*
3lzf_B* 3r2x_B* 3sm5_B* ...
Length = 174
Score = 24.2 bits (52), Expect = 8.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 53 FSVIDSEFSNIRERFDAEMRKMEDEMT 79
F + EFSN+ R + +KMED
Sbjct: 63 FEAVGKEFSNLERRLENLNKKMEDGFL 89
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Length = 176
Score = 24.2 bits (52), Expect = 9.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 53 FSVIDSEFSNIRERFDAEMRKMEDEMT 79
+ +ID EFS I R + K++D++
Sbjct: 63 YGIIDHEFSEIETRLNMINNKIDDQIQ 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.135 0.385
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,506,637
Number of extensions: 75199
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 28
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)