RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17760
         (105 letters)



>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 268

 Score = 25.4 bits (55), Expect = 1.4
 Identities = 5/74 (6%), Positives = 27/74 (36%)

Query: 10  FYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDA 69
             +  ++ ++ +++ +    + +  ++      +          + I +   N+R   D+
Sbjct: 178 CALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDS 237

Query: 70  EMRKMEDEMTKFRS 83
           ++  M+  +     
Sbjct: 238 DIETMQQTIEDLEV 251


>d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C
           {Haemophilus ducreyi [TaxId: 730]}
          Length = 154

 Score = 24.8 bits (54), Expect = 1.8
 Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 3/45 (6%)

Query: 5   MKNAKFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIK 49
                F IK   +  C++  DF  +    C         R   + 
Sbjct: 96  TNTGAFLIKDALLGFCITSHDFDDLKLEPCGG---SVSGRTFSLA 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,958
Number of extensions: 14402
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 9
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)