BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17761
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AZM|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
Length = 106
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKRQT
Sbjct: 50 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRQT 84
>pdb|2HUE|C Chain C, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones
H3 And H4
pdb|3NQJ|B Chain B, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 84
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 28 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 62
>pdb|3A6N|B Chain B, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|F Chain F, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|B Chain B, The Human Nucleosome Structure
pdb|3AFA|F Chain F, The Human Nucleosome Structure
pdb|3AV1|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|B Chain B, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|F Chain F, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 106
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 50 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 84
>pdb|1P3B|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 46 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
>pdb|3AZN|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 106
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 50 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 84
>pdb|3AZJ|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
Length = 106
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 50 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 84
>pdb|3AZI|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
Length = 106
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 50 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 84
>pdb|2HIO|D Chain D, Histone Octamer (Chicken), Chromosomal Protein
Length = 103
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 47 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
>pdb|1EQZ|D Chain D, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|H Chain H, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1F66|B Chain B, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|F Chain F, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1HQ3|D Chain D, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|H Chain H, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|D Chain D, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|H Chain H, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2CV5|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
pdb|2ARO|D Chain D, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|H Chain H, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|1U35|B Chain B, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|F Chain F, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|B Chain B, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|F Chain F, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|3NQU|B Chain B, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
pdb|3R45|B Chain B, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
pdb|4HGA|C Chain C, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 103
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 47 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
>pdb|1P3O|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 46 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
>pdb|1HIO|D Chain D, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 76
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 20 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 54
>pdb|1P3G|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 46 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
>pdb|3KWQ|B Chain B, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|F Chain F, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|4H9S|C Chain C, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|D Chain D, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 83
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 27 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 61
>pdb|1KX3|B Chain B, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|F Chain F, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|B Chain B, X-Ray Structure Of The Nucleosome Core Particle,
Ncp146b, At 2.6 A Resolution
pdb|1KX4|F Chain F, X-Ray Structure Of The Nucleosome Core Particle,
Ncp146b, At 2.6 A Resolution
pdb|1KX5|B Chain B, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|F Chain F, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1S32|B Chain B, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|F Chain F, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|B Chain B, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|F Chain F, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|BB Chain b, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|FF Chain f, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZLA|B Chain B, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|F Chain F, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|2FJ7|B Chain B, Crystal Structure Of Nucleosome Core Particle Containing
A Poly (Da.Dt) Sequence Element
pdb|2FJ7|F Chain F, Crystal Structure Of Nucleosome Core Particle Containing
A Poly (Da.Dt) Sequence Element
pdb|2IO5|C Chain C, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NZD|B Chain B, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|F Chain F, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|B Chain B, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|F Chain F, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|B Chain B, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|F Chain F, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1C|B Chain B, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|F Chain F, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C9K|D Chain D, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|H Chain H, Model Of Histone Octamer Tubular Crystals
pdb|3KUY|B Chain B, Dna Stretching In The Nucleosome Facilitates Alkylation
By An Intercalating Antitumor Agent
pdb|3KUY|F Chain F, Dna Stretching In The Nucleosome Facilitates Alkylation
By An Intercalating Antitumor Agent
pdb|3LJA|B Chain B, Using Soft X-Rays For A Detailed Picture Of Divalent
Metal Binding In The Nucleosome
pdb|3LJA|F Chain F, Using Soft X-Rays For A Detailed Picture Of Divalent
Metal Binding In The Nucleosome
pdb|3LEL|B Chain B, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|F Chain F, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|L Chain L, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|P Chain P, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|B Chain B, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|F Chain F, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|B Chain B, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|F Chain F, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|B Chain B, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|F Chain F, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|B Chain B, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|F Chain F, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3KXB|B Chain B, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|F Chain F, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|B Chain B, Crystal Structure Of The Chromatin Factor Rcc1 In
Complex With The Nucleosome Core Particle
pdb|3MVD|F Chain F, Crystal Structure Of The Chromatin Factor Rcc1 In
Complex With The Nucleosome Core Particle
pdb|3LZ0|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|B Chain B, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|F Chain F, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|B Chain B, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|F Chain F, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|B Chain B, Crystal Structure Of The Sir3 Bah Domain In Complex With
A Nucleosome Core Particle.
pdb|3TU4|F Chain F, Crystal Structure Of The Sir3 Bah Domain In Complex With
A Nucleosome Core Particle.
pdb|3REH|B Chain B, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|F Chain F, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|B Chain B, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|F Chain F, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|B Chain B, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|F Chain F, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|B Chain B, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|F Chain F, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|B Chain B, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|F Chain F, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|4H9N|B Chain B, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9O|B Chain B, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
pdb|4H9P|B Chain B, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9Q|B Chain B, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
pdb|4H9R|B Chain B, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 102
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 46 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
>pdb|1P3P|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 46 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
>pdb|3C1B|B Chain B, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|F Chain F, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 102
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 46 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
>pdb|1P3I|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 46 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
>pdb|1AOI|B Chain B, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|F Chain F, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 87
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 31 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 65
>pdb|1P3F|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 46 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
>pdb|2NQB|B Chain B, Drosophila Nucleosome Structure
pdb|2NQB|F Chain F, Drosophila Nucleosome Structure
Length = 103
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 47 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
>pdb|2PYO|B Chain B, Drosophila Nucleosome Core
pdb|2PYO|F Chain F, Drosophila Nucleosome Core
Length = 102
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 46 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 80
>pdb|4EO5|C Chain C, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 83
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HAKR+T
Sbjct: 27 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 61
>pdb|3AZL|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
Length = 106
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVLKV LENVIRDAVTY HA+R+T
Sbjct: 50 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAQRKT 84
>pdb|3AZK|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
Length = 106
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEETRGVL+V LENVIRDAVTY HAKR+T
Sbjct: 50 ISGLIYEETRGVLQVFLENVIRDAVTYTEHAKRKT 84
>pdb|2YFV|B Chain B, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 74
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEE R VLK LE+VIRDAVTY HAKR+T
Sbjct: 23 ISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKT 57
>pdb|2YFW|B Chain B, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|D Chain D, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|F Chain F, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|H Chain H, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 103
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEE R VLK LE+VIRDAVTY HAKR+T
Sbjct: 47 ISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKT 81
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEE R VLK LE+VIRD+VTY HAKR+T
Sbjct: 179 ISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT 213
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The
Partially Unfolded Dimer Of The Centromere-specific
Cse4/h4 Histone Variant
Length = 121
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEE R VLK LE+VIRD+VTY HAKR+T
Sbjct: 65 ISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT 99
>pdb|1ID3|B Chain B, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|F Chain F, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 102
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
+GLIYEE R VLK LE+VIRD+VTY HAKR+T
Sbjct: 46 ISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,386,432
Number of Sequences: 62578
Number of extensions: 64155
Number of successful extensions: 113
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 29
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)