RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17761
         (92 letters)



>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
          (Xenopus laevis) [TaxId: 8355]}
          Length = 82

 Score = 44.0 bits (104), Expect = 5e-08
 Identities = 29/35 (82%), Positives = 31/35 (88%)

Query: 34 FAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
           +GLIYEETRGVLKV LENVIRDAVTY  HAKR+T
Sbjct: 27 ISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 61


>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
           kandleri [TaxId: 2320]}
          Length = 151

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 1/52 (1%)

Query: 35  AGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQTGHQRMDSRLRAKTSRPHP 86
           +    +    ++    E +   A  Y     R+T  Q  D       S P  
Sbjct: 98  SSDAVDLYNKLICRATEELGEKAAEYADEDGRKT-VQGEDVEKAITYSMPKG 148



 Score = 28.6 bits (64), Expect = 0.071
 Identities = 4/31 (12%), Positives = 11/31 (35%)

Query: 38 IYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
            +     +  + E V   A +    + ++T
Sbjct: 24 AKDTIYDFVPTMAEYVANAAKSVLDASGKKT 54


>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
          horikoshii) [TaxId: 53953]}
          Length = 66

 Score = 32.4 bits (74), Expect = 0.001
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 20 PPSVVWRV--EVESSVFAGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
          P + V R+  +  +   +    +     L+     + + AV + RHA R+T
Sbjct: 4  PIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54


>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
          fervidus, histone A [TaxId: 2180]}
          Length = 68

 Score = 30.5 bits (69), Expect = 0.006
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 35 AGLIYEETRGVLKVVLENVIRDAVTYPRHAKRQT 68
          +         VL+ + E +  +AV   +HA R+T
Sbjct: 22 SDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT 55


>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 70

 Score = 23.9 bits (52), Expect = 2.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 50 LENVIRDAVTYPRHAKRQT 68
          L+ +++DA  +  HAKRQ 
Sbjct: 40 LKRIVQDAAKFMNHAKRQK 58


>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 68

 Score = 23.5 bits (51), Expect = 2.8
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 52 NVIRDAVTYPRHAKRQT 68
          +++ DA  Y  HA+++T
Sbjct: 37 SILDDAKVYANHARKKT 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 326,450
Number of extensions: 11811
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 8
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)