Query psy17762
Match_columns 124
No_of_seqs 108 out of 606
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:13:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00153 histone H2A; Provisio 100.0 2E-51 4.3E-56 292.2 10.7 123 1-123 1-123 (129)
2 PLN00157 histone H2A; Provisio 100.0 9.7E-51 2.1E-55 289.7 11.1 123 1-123 1-125 (132)
3 PTZ00017 histone H2A; Provisio 100.0 3.5E-49 7.6E-54 282.5 10.8 123 1-123 1-126 (134)
4 PLN00156 histone H2AX; Provisi 100.0 5.9E-49 1.3E-53 282.2 10.4 118 5-122 10-127 (139)
5 PTZ00252 histone H2A; Provisio 100.0 1.3E-47 2.9E-52 273.3 10.4 111 12-122 12-126 (134)
6 PLN00154 histone H2A; Provisio 100.0 1.6E-46 3.4E-51 268.6 10.5 111 11-122 25-136 (136)
7 cd00074 H2A Histone 2A; H2A is 100.0 2.5E-46 5.5E-51 262.7 10.7 112 8-119 4-115 (115)
8 KOG1756|consensus 100.0 1.9E-46 4.1E-51 264.4 9.9 122 1-122 1-125 (131)
9 smart00414 H2A Histone 2A. 100.0 5E-46 1.1E-50 258.0 9.5 105 16-120 1-105 (106)
10 COG5262 HTA1 Histone H2A [Chro 100.0 1.5E-44 3.2E-49 251.9 9.1 120 3-122 3-124 (132)
11 KOG1757|consensus 100.0 8.4E-40 1.8E-44 226.7 3.8 111 12-123 18-129 (131)
12 PLN00155 histone H2A; Provisio 99.9 7.4E-24 1.6E-28 131.7 4.6 58 1-58 1-58 (58)
13 PF00125 Histone: Core histone 99.6 1.4E-15 3E-20 98.3 4.8 73 18-90 2-75 (75)
14 PLN00035 histone H4; Provision 99.6 1.6E-15 3.4E-20 104.7 5.3 86 1-89 1-93 (103)
15 COG5247 BUR6 Class 2 transcrip 99.5 1.2E-14 2.6E-19 99.6 5.7 86 21-106 20-105 (113)
16 PTZ00015 histone H4; Provision 99.5 9.9E-14 2.2E-18 95.6 5.9 85 1-88 1-93 (102)
17 KOG1659|consensus 99.3 2.9E-12 6.3E-17 97.9 6.2 77 22-98 11-87 (224)
18 PF00808 CBFD_NFYB_HMF: Histon 99.3 1.4E-11 3E-16 77.9 6.5 64 24-87 2-65 (65)
19 cd00076 H4 Histone H4, one of 99.2 1E-11 2.2E-16 83.2 4.6 76 11-89 2-77 (85)
20 smart00417 H4 Histone H4. 99.2 1.3E-11 2.8E-16 80.7 4.0 73 11-86 2-74 (74)
21 COG2036 HHT1 Histones H3 and H 99.2 2.3E-11 5E-16 82.4 5.3 67 21-88 16-82 (91)
22 smart00803 TAF TATA box bindin 99.2 7.4E-11 1.6E-15 75.3 6.4 64 24-88 2-65 (65)
23 COG5208 HAP5 CCAAT-binding fac 98.8 1E-08 2.2E-13 79.2 5.7 75 23-97 108-182 (286)
24 KOG3467|consensus 98.8 1.8E-08 4E-13 67.6 5.5 86 1-89 1-93 (103)
25 KOG1657|consensus 98.6 3.5E-08 7.5E-13 77.1 4.3 85 16-100 66-150 (236)
26 cd07979 TAF9 TATA Binding Prot 98.4 1.1E-06 2.4E-11 61.9 6.0 60 29-89 6-65 (117)
27 cd07981 TAF12 TATA Binding Pro 98.4 1.5E-06 3.3E-11 56.2 6.1 65 26-90 3-67 (72)
28 smart00576 BTP Bromodomain tra 98.1 1.2E-05 2.7E-10 52.4 5.9 59 30-89 12-70 (77)
29 PF02969 TAF: TATA box binding 97.8 6.3E-05 1.4E-09 48.1 5.9 64 24-88 3-66 (66)
30 cd08050 TAF6 TATA Binding Prot 97.8 5.8E-05 1.3E-09 61.7 6.2 60 28-88 3-62 (343)
31 smart00428 H3 Histone H3. 97.7 7.3E-05 1.6E-09 51.9 5.3 67 22-88 27-99 (105)
32 cd08048 TAF11 TATA Binding Pro 97.4 0.00077 1.7E-08 45.1 6.5 63 25-88 17-82 (85)
33 KOG0869|consensus 97.3 0.00062 1.4E-08 50.3 6.0 66 23-88 31-97 (168)
34 smart00427 H2B Histone H2B. 97.2 0.0011 2.3E-08 44.8 5.8 61 28-88 5-65 (89)
35 PF15511 CENP-T: Centromere ki 97.2 0.00048 1E-08 57.7 4.9 72 11-82 338-414 (414)
36 PLN00158 histone H2B; Provisio 97.2 0.0014 3.1E-08 46.1 5.9 61 28-88 31-91 (116)
37 PTZ00463 histone H2B; Provisio 97.0 0.0023 4.9E-08 45.2 5.8 61 28-88 32-92 (117)
38 KOG3219|consensus 96.8 0.0014 3E-08 49.9 3.7 66 23-89 111-177 (195)
39 PF15630 CENP-S: Kinetochore c 96.8 0.0064 1.4E-07 39.8 6.3 48 46-93 26-76 (76)
40 KOG0871|consensus 96.8 0.0046 1E-07 45.3 6.0 71 19-89 7-78 (156)
41 PF04719 TAFII28: hTAFII28-lik 96.7 0.0033 7.1E-08 42.5 4.6 64 24-88 23-88 (90)
42 PLN00163 histone H4; Provision 96.7 0.00049 1.1E-08 42.9 0.3 45 1-48 1-52 (59)
43 PF07524 Bromo_TP: Bromodomain 96.6 0.0091 2E-07 38.5 5.8 58 30-88 12-69 (77)
44 PF02291 TFIID-31kDa: Transcri 96.5 0.011 2.4E-07 42.4 6.3 61 27-88 15-75 (129)
45 PF03847 TFIID_20kDa: Transcri 96.4 0.012 2.6E-07 37.7 5.4 62 29-90 4-65 (68)
46 PLN00161 histone H3; Provision 96.3 0.0092 2E-07 43.1 4.9 67 22-88 53-124 (135)
47 PLN00160 histone H3; Provision 96.2 0.01 2.2E-07 40.7 4.5 67 22-88 19-90 (97)
48 KOG1658|consensus 96.1 0.0045 9.9E-08 45.7 2.7 76 23-98 58-133 (162)
49 PTZ00018 histone H3; Provision 96.1 0.012 2.6E-07 42.7 4.6 67 22-88 60-130 (136)
50 PF09415 CENP-X: CENP-S associ 96.0 0.042 9.1E-07 35.6 6.6 61 26-86 1-64 (72)
51 PLN00121 histone H3; Provision 95.9 0.012 2.6E-07 42.7 3.8 67 22-88 60-130 (136)
52 KOG1744|consensus 95.3 0.099 2.1E-06 37.5 6.8 67 19-88 35-101 (127)
53 KOG0870|consensus 95.2 0.068 1.5E-06 39.9 5.8 67 21-88 7-76 (172)
54 KOG1745|consensus 94.0 0.054 1.2E-06 39.3 2.8 64 25-88 64-131 (137)
55 PF02269 TFIID-18kDa: Transcri 93.9 0.059 1.3E-06 36.3 2.8 63 31-93 8-70 (93)
56 KOG1142|consensus 93.9 0.081 1.8E-06 42.0 3.8 68 24-91 154-221 (258)
57 cd07978 TAF13 The TATA Binding 93.7 0.39 8.4E-06 32.4 6.5 62 30-92 8-69 (92)
58 KOG3334|consensus 92.8 0.47 1E-05 34.7 6.1 56 30-89 19-77 (148)
59 COG5094 TAF9 Transcription ini 87.9 2.6 5.6E-05 30.3 6.2 61 29-90 19-82 (145)
60 PF15510 CENP-W: Centromere ki 86.3 2.3 5E-05 29.0 4.9 65 24-88 16-94 (102)
61 COG5150 Class 2 transcription 85.3 3.4 7.5E-05 29.8 5.7 67 22-89 9-77 (148)
62 KOG2549|consensus 79.5 6 0.00013 34.8 6.1 61 27-88 14-74 (576)
63 COG5251 TAF40 Transcription in 79.3 2.6 5.5E-05 31.9 3.3 65 24-89 115-180 (199)
64 PF02861 Clp_N: Clp amino term 78.4 2 4.4E-05 24.7 2.1 33 66-98 1-35 (53)
65 KOG4336|consensus 77.6 9.5 0.00021 31.3 6.3 84 30-114 11-101 (323)
66 PF13335 Mg_chelatase_2: Magne 73.5 4.6 9.9E-05 27.1 3.1 48 41-88 41-94 (96)
67 PF08369 PCP_red: Proto-chloro 66.9 20 0.00043 20.9 4.5 26 61-86 19-44 (45)
68 KOG3901|consensus 65.5 12 0.00025 26.2 3.7 41 51-92 33-74 (109)
69 COG5095 TAF6 Transcription ini 65.1 26 0.00057 29.3 6.3 49 40-88 20-68 (450)
70 COG1474 CDC6 Cdc6-related prot 64.9 16 0.00034 30.3 5.1 74 19-93 181-267 (366)
71 KOG1658|consensus 62.7 15 0.00032 27.3 4.1 74 21-99 8-81 (162)
72 PF04604 L_biotic_typeA: Type- 60.6 5.3 0.00012 24.3 1.2 22 89-113 16-37 (51)
73 PF12767 SAGA-Tad1: Transcript 60.0 15 0.00033 28.6 4.0 41 28-69 210-250 (252)
74 TIGR02928 orc1/cdc6 family rep 58.1 45 0.00097 26.5 6.5 66 23-88 194-272 (365)
75 PRK00411 cdc6 cell division co 57.3 45 0.00097 26.9 6.5 68 22-89 201-281 (394)
76 PF13654 AAA_32: AAA domain; P 55.0 16 0.00035 31.6 3.7 31 59-89 475-505 (509)
77 TIGR00764 lon_rel lon-related 53.1 49 0.0011 29.3 6.4 29 60-88 361-389 (608)
78 KOG0787|consensus 52.7 6.8 0.00015 33.1 1.0 60 47-110 253-314 (414)
79 PHA02669 hypothetical protein; 49.4 31 0.00068 26.1 4.0 19 47-65 12-30 (210)
80 COG3636 Predicted transcriptio 48.7 19 0.0004 24.8 2.5 54 45-98 21-83 (100)
81 PF09123 DUF1931: Domain of un 48.2 7.9 0.00017 28.1 0.6 54 31-85 2-55 (138)
82 COG1067 LonB Predicted ATP-dep 46.3 50 0.0011 29.7 5.4 33 61-93 370-402 (647)
83 cd08045 TAF4 TATA Binding Prot 44.6 61 0.0013 24.5 5.1 56 17-73 37-96 (212)
84 TIGR01128 holA DNA polymerase 43.2 62 0.0013 24.9 5.0 66 27-92 113-180 (302)
85 COG5248 TAF19 Transcription in 42.8 84 0.0018 22.2 5.0 52 42-93 24-76 (126)
86 smart00350 MCM minichromosome 42.8 55 0.0012 28.1 5.0 66 23-88 416-502 (509)
87 COG4430 Uncharacterized protei 42.1 25 0.00053 27.1 2.5 48 53-100 109-159 (200)
88 PF12096 DUF3572: Protein of u 40.3 24 0.00053 23.7 2.0 55 28-87 22-80 (88)
89 PRK11034 clpA ATP-dependent Cl 39.6 39 0.00084 30.8 3.8 41 59-99 6-46 (758)
90 cd05029 S-100A6 S-100A6: S-100 39.4 92 0.002 20.2 4.7 55 55-109 5-69 (88)
91 TIGR02263 benz_CoA_red_C benzo 38.7 56 0.0012 27.0 4.4 44 54-98 136-179 (380)
92 PRK05574 holA DNA polymerase I 38.5 76 0.0016 24.9 4.9 61 30-92 155-215 (340)
93 PHA02943 hypothetical protein; 37.9 73 0.0016 23.8 4.4 41 59-99 76-116 (165)
94 PRK13194 pyrrolidone-carboxyla 37.6 42 0.00092 25.7 3.2 40 23-62 113-152 (208)
95 PF03540 TFIID_30kDa: Transcri 37.2 95 0.0021 18.7 5.6 48 24-72 2-49 (51)
96 PF05236 TAF4: Transcription i 37.2 84 0.0018 24.6 4.9 55 18-73 37-95 (264)
97 PF02681 DUF212: Divergent PAP 35.7 77 0.0017 23.0 4.2 48 47-116 4-51 (141)
98 TIGR00368 Mg chelatase-related 35.5 66 0.0014 27.8 4.4 46 43-88 446-497 (499)
99 KOG1051|consensus 35.2 29 0.00063 32.4 2.3 49 55-105 9-60 (898)
100 cd05025 S-100A1 S-100A1: S-100 34.9 1E+02 0.0022 19.7 4.4 53 55-108 4-69 (92)
101 PRK09862 putative ATP-dependen 34.5 44 0.00095 29.1 3.2 28 61-88 463-490 (506)
102 cd05026 S-100Z S-100Z: S-100Z 33.7 1.2E+02 0.0025 19.7 4.6 54 55-108 5-70 (93)
103 PF04558 tRNA_synt_1c_R1: Glut 33.5 56 0.0012 24.1 3.2 41 47-88 83-127 (164)
104 PF09377 SBDS_C: SBDS protein 32.9 91 0.002 21.8 4.1 30 20-49 18-47 (125)
105 TIGR02639 ClpA ATP-dependent C 32.0 62 0.0013 29.1 3.8 39 60-98 6-44 (731)
106 PRK05629 hypothetical protein; 30.0 1.1E+02 0.0024 24.3 4.6 61 28-93 129-195 (318)
107 PF01470 Peptidase_C15: Pyrogl 29.7 53 0.0011 24.8 2.6 43 23-65 113-155 (202)
108 PRK07452 DNA polymerase III su 27.5 1.4E+02 0.0029 23.6 4.7 61 30-90 135-199 (326)
109 KOG3423|consensus 27.4 2.7E+02 0.0059 21.0 6.7 66 22-88 84-163 (176)
110 PRK06585 holA DNA polymerase I 27.3 1.1E+02 0.0024 24.2 4.3 58 30-92 151-212 (343)
111 PF13376 OmdA: Bacteriocin-pro 27.2 44 0.00094 20.4 1.5 24 77-100 4-27 (63)
112 PF05527 DUF758: Domain of unk 27.1 32 0.0007 26.1 1.0 63 53-116 54-116 (186)
113 TIGR03190 benz_CoA_bzdN benzoy 26.9 1.2E+02 0.0025 25.0 4.4 45 52-97 130-174 (377)
114 cd05031 S-100A10_like S-100A10 26.9 1.8E+02 0.0038 18.7 4.5 54 55-109 3-69 (94)
115 COG4905 Predicted membrane pro 26.8 70 0.0015 24.9 2.8 22 47-68 70-91 (243)
116 PRK05907 hypothetical protein; 26.5 1.2E+02 0.0026 24.5 4.3 63 28-93 137-206 (311)
117 TIGR02442 Cob-chelat-sub cobal 25.1 85 0.0018 27.8 3.4 47 42-88 249-302 (633)
118 TIGR03191 benz_CoA_bzdO benzoy 25.0 1.2E+02 0.0026 25.6 4.2 40 52-92 154-193 (430)
119 PRK13195 pyrrolidone-carboxyla 24.1 61 0.0013 25.2 2.1 42 23-64 117-158 (222)
120 PRK08487 DNA polymerase III su 24.0 1.6E+02 0.0034 23.5 4.6 56 29-92 143-202 (328)
121 PRK13193 pyrrolidone-carboxyla 24.0 1E+02 0.0022 23.5 3.3 41 23-63 113-153 (209)
122 TIGR02639 ClpA ATP-dependent C 23.8 98 0.0021 27.8 3.6 34 59-92 82-115 (731)
123 TIGR00504 pyro_pdase pyrogluta 23.8 64 0.0014 24.7 2.1 42 23-64 111-152 (212)
124 COG2039 Pcp Pyrrolidone-carbox 23.8 1.2E+02 0.0026 23.5 3.6 44 23-66 113-156 (207)
125 PF08539 HbrB: HbrB-like; Int 23.4 65 0.0014 23.7 2.0 83 21-119 23-106 (158)
126 TIGR03015 pepcterm_ATPase puta 23.3 1.3E+02 0.0028 22.6 3.8 46 43-88 216-264 (269)
127 KOG3902|consensus 23.2 2.9E+02 0.0062 22.9 5.8 60 32-91 32-91 (352)
128 PRK13406 bchD magnesium chelat 22.9 1.2E+02 0.0026 26.9 3.9 48 41-88 194-248 (584)
129 CHL00095 clpC Clp protease ATP 22.8 97 0.0021 28.3 3.4 33 60-92 10-42 (821)
130 PRK13196 pyrrolidone-carboxyla 22.7 70 0.0015 24.4 2.2 42 23-64 116-157 (211)
131 COG1466 HolA DNA polymerase II 22.3 1.7E+02 0.0036 23.5 4.4 67 28-94 143-211 (334)
132 PRK07914 hypothetical protein; 21.9 1.5E+02 0.0033 23.5 4.0 63 26-93 129-197 (320)
133 PTZ00361 26 proteosome regulat 21.9 1.2E+02 0.0026 25.9 3.6 29 61-89 395-423 (438)
134 TIGR03346 chaperone_ClpB ATP-d 21.8 1.1E+02 0.0023 28.2 3.5 33 59-91 5-37 (852)
135 TIGR02030 BchI-ChlI magnesium 21.5 1.2E+02 0.0025 24.9 3.4 46 43-88 255-307 (337)
136 PF09077 Phage-MuB_C: Mu B tra 21.4 44 0.00094 21.9 0.7 29 59-88 48-76 (78)
137 TIGR01242 26Sp45 26S proteasom 20.7 1.4E+02 0.003 24.2 3.6 28 61-88 334-361 (364)
138 COG1963 Uncharacterized protei 20.2 2.4E+02 0.0051 20.9 4.3 47 48-116 11-57 (153)
No 1
>PLN00153 histone H2A; Provisional
Probab=100.00 E-value=2e-51 Score=292.22 Aligned_cols=123 Identities=76% Similarity=1.151 Sum_probs=118.0
Q ss_pred CCCCCCCCCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceech
Q psy17762 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 80 (124)
Q Consensus 1 m~~~gk~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p 80 (124)
|+|+||+++.+++..|+|+||||+|||+||+|+|+++.|+.||+++|+|||+||||||++||||+|+|.|.++++++|+|
T Consensus 1 m~g~~~~~~~~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItP 80 (129)
T PLN00153 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVP 80 (129)
T ss_pred CCCCCCCCccccCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCh
Confidence 99999876666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhCchHHhhhhcCceeccCccCCCccccccCcccccC
Q psy17762 81 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123 (124)
Q Consensus 81 ~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~~ 123 (124)
+||++||+||+||+.||+++||++|||+|+||++|++||++++
T Consensus 81 rHi~lAI~nDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~~ 123 (129)
T PLN00153 81 RHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGG 123 (129)
T ss_pred HHHHhhccCcHHHHHHHCCCccCCCccCCCcchhhcCcccCCC
Confidence 9999999999999999999999999999999999999987654
No 2
>PLN00157 histone H2A; Provisional
Probab=100.00 E-value=9.7e-51 Score=289.68 Aligned_cols=123 Identities=77% Similarity=1.185 Sum_probs=117.6
Q ss_pred CCCCCC--CCCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q psy17762 1 MSGRGK--GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 78 (124)
Q Consensus 1 m~~~gk--~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I 78 (124)
|+|+|+ +++.+++..|+|+||||+|||+||+|+|+++.|+.||+++|+|||+||||||++||||+|+|.|.++++++|
T Consensus 1 ms~~g~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RI 80 (132)
T PLN00157 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 80 (132)
T ss_pred CCCCCCCCCCccCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 899988 556677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhCchHHhhhhcCceeccCccCCCccccccCcccccC
Q psy17762 79 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123 (124)
Q Consensus 79 ~p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~~ 123 (124)
+|+||++||+||+||+.||+++||++|||+|+||++|++||..++
T Consensus 81 tPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~ll~kk~~~~ 125 (132)
T PLN00157 81 VPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSGKS 125 (132)
T ss_pred cHHHHhhcccCcHHHHHHHcCceecCCccCCCcchhhcCCCCCCC
Confidence 999999999999999999999999999999999999999998654
No 3
>PTZ00017 histone H2A; Provisional
Probab=100.00 E-value=3.5e-49 Score=282.46 Aligned_cols=123 Identities=76% Similarity=1.157 Sum_probs=114.8
Q ss_pred CCCCCCCC-CC--CCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Q psy17762 1 MSGRGKGG-KA--KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 77 (124)
Q Consensus 1 m~~~gk~~-~~--~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~ 77 (124)
|+|+|+.+ +. +++..|+|+||||+|||+||+|||+++.|+.||+++|+|||+||||||++||||+|+|.|+++++++
T Consensus 1 ~~~~~~~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~R 80 (134)
T PTZ00017 1 KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKR 80 (134)
T ss_pred CCCCCcCCCCcccCcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 57776632 22 5667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhHHHhhhCchHHhhhhcCceeccCccCCCccccccCcccccC
Q psy17762 78 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123 (124)
Q Consensus 78 I~p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~~ 123 (124)
|+|+||++||+||+||+.||+++||++|||+|+||++|+++|.++|
T Consensus 81 ItPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~l~~k~~~~~ 126 (134)
T PTZ00017 81 ITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVLLPKKSKPK 126 (134)
T ss_pred ecHHHHHhhccCcHHHHHHHcCCcccCCccCCCccHhhccCCCCcc
Confidence 9999999999999999999999999999999999999999988765
No 4
>PLN00156 histone H2AX; Provisional
Probab=100.00 E-value=5.9e-49 Score=282.19 Aligned_cols=118 Identities=75% Similarity=1.141 Sum_probs=112.8
Q ss_pred CCCCCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHH
Q psy17762 5 GKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 84 (124)
Q Consensus 5 gk~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~ 84 (124)
|++++.+++..|+|+||||+|||+||+|+|++++|+.||+++|||||+||||||++||||+|+|.|.++++++|+|+||+
T Consensus 10 ~~g~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~ 89 (139)
T PLN00156 10 GRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQ 89 (139)
T ss_pred CCCcccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHH
Confidence 44556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCchHHhhhhcCceeccCccCCCccccccCccccc
Q psy17762 85 LAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122 (124)
Q Consensus 85 ~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~ 122 (124)
+||+||+||+.||+++||++|||+|+||++|++||+++
T Consensus 90 lAIrnDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~ 127 (139)
T PLN00156 90 LAVRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKKVGK 127 (139)
T ss_pred hhccCcHHHHHHHCCCccCCCccCCCccHhhccccccc
Confidence 99999999999999999999999999999999998854
No 5
>PTZ00252 histone H2A; Provisional
Probab=100.00 E-value=1.3e-47 Score=273.30 Aligned_cols=111 Identities=51% Similarity=0.878 Sum_probs=103.6
Q ss_pred CccCC-CCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHh--CCCceechhhHHHhhh
Q psy17762 12 AKSKT-RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD--NKKTRIIPRHLQLAIR 88 (124)
Q Consensus 12 ~~~~s-~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~--~~~k~I~p~~i~~AI~ 88 (124)
++..+ +|+||||+|||+||+|+|++++|+.||+++|+|||+||||||++||||+|+|.|.+ +++++|+|+||++||+
T Consensus 12 ~~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr 91 (134)
T PTZ00252 12 SKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR 91 (134)
T ss_pred cccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence 34454 99999999999999999999999999999999999999999999999999999965 6778999999999999
Q ss_pred CchHHhhhhcCceeccCccCCCccccccCc-cccc
Q psy17762 89 NDEELNKLLSGVTIAQGGVLPNIQAVLLPK-KTEK 122 (124)
Q Consensus 89 ~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~-k~~~ 122 (124)
||+|||.||+++||++|||+|+||++|++| ++.+
T Consensus 92 NDeEL~~Ll~~vTIa~GGVlP~i~~~l~~k~~~~~ 126 (134)
T PTZ00252 92 HDDDLGSLLKNVTLSRGGVMPSLNKALAKKHKSGK 126 (134)
T ss_pred ChHHHHHHHcCCccCCCccCCCccHhhccccccCC
Confidence 999999999999999999999999999999 4443
No 6
>PLN00154 histone H2A; Provisional
Probab=100.00 E-value=1.6e-46 Score=268.60 Aligned_cols=111 Identities=64% Similarity=0.919 Sum_probs=106.3
Q ss_pred CCccCCCCcccccccchhhhhHHHhcCC-cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 11 KAKSKTRSSRAGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 11 ~~~~~s~s~ragl~fPv~ri~R~lk~~~-~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
+++..|+|+||||+|||+||+|+|+++. +.+||+.+|+|||+||||||++||||+|+|+|+++++++|+|+||++||+|
T Consensus 25 ~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrn 104 (136)
T PLN00154 25 KKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
T ss_pred CcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccC
Confidence 5678999999999999999999999987 578999999999999999999999999999999999999999999999999
Q ss_pred chHHhhhhcCceeccCccCCCccccccCccccc
Q psy17762 90 DEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122 (124)
Q Consensus 90 d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~ 122 (124)
|+||++||+ +||++|||+|+||++|++||++|
T Consensus 105 DeEL~~Ll~-~TIa~GGVlP~i~~~l~~k~~~~ 136 (136)
T PLN00154 105 DEELDTLIK-GTIAGGGVIPHIHKSLINKSTKK 136 (136)
T ss_pred cHHHHHHhc-CCccCCccCCCcchhhcccccCC
Confidence 999999997 69999999999999999998765
No 7
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=100.00 E-value=2.5e-46 Score=262.75 Aligned_cols=112 Identities=84% Similarity=1.254 Sum_probs=108.2
Q ss_pred CCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhh
Q psy17762 8 GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 87 (124)
Q Consensus 8 ~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI 87 (124)
||.+++..|+|+|+||+|||+||+|||+++.+++|||++|+|||+|+||||++||+|+|+|.|+++++++|+|+||++||
T Consensus 4 ~k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi 83 (115)
T cd00074 4 GKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAV 83 (115)
T ss_pred CccCcCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHH
Confidence 36677889999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred hCchHHhhhhcCceeccCccCCCccccccCcc
Q psy17762 88 RNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119 (124)
Q Consensus 88 ~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k 119 (124)
+||+|||+||+++||++|||+|+||++|+++|
T Consensus 84 ~nD~EL~~L~~~vtI~~ggv~p~i~~~l~~~~ 115 (115)
T cd00074 84 RNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115 (115)
T ss_pred hccHHHHHHHcCCcccCCccCCCcchhhcCCC
Confidence 99999999999999999999999999999875
No 8
>KOG1756|consensus
Probab=100.00 E-value=1.9e-46 Score=264.39 Aligned_cols=122 Identities=87% Similarity=1.254 Sum_probs=115.7
Q ss_pred CCCCCCCCCC---CCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Q psy17762 1 MSGRGKGGKA---KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 77 (124)
Q Consensus 1 m~~~gk~~~~---~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~ 77 (124)
|+++||+|++ ++++.|+|.++||+|||++|+|+|++++|++||+.+|||||+||||||++||+|+|+|+|+++++.+
T Consensus 1 ~s~~~k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~r 80 (131)
T KOG1756|consen 1 MSGRGKGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 80 (131)
T ss_pred CCccCCCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccc
Confidence 7888886665 3457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhHHHhhhCchHHhhhhcCceeccCccCCCccccccCccccc
Q psy17762 78 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122 (124)
Q Consensus 78 I~p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~ 122 (124)
|+|+||++||+||+||.+|+++|+|++|||+|+||+.|++||+.+
T Consensus 81 i~PrH~~lAI~NDeEL~~lL~~vtIa~GGvlPnI~~~lLpKk~~~ 125 (131)
T KOG1756|consen 81 ITPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAILLPKKTGK 125 (131)
T ss_pred cChHHHHHHHhCcHHHHHHhccceeccCCcccccchhhccccccc
Confidence 999999999999999999999999999999999999999999876
No 9
>smart00414 H2A Histone 2A.
Probab=100.00 E-value=5e-46 Score=258.02 Aligned_cols=105 Identities=90% Similarity=1.304 Sum_probs=103.1
Q ss_pred CCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhh
Q psy17762 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 95 (124)
Q Consensus 16 s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~ 95 (124)
|+|+|+||+|||+||+|||++++|+.||+++|+|||+||||||++||||+|+++|.++++++|+|+||++||+||+|||+
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~ 80 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK 80 (106)
T ss_pred CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceeccCccCCCccccccCccc
Q psy17762 96 LLSGVTIAQGGVLPNIQAVLLPKKT 120 (124)
Q Consensus 96 L~~~~~i~~gg~~p~~~~~~~~~k~ 120 (124)
||+++||++|||+|+||++|++||+
T Consensus 81 L~~~vti~~ggv~p~i~~~l~~~~~ 105 (106)
T smart00414 81 LLKGVTIAQGGVLPNIHKVLLPKKT 105 (106)
T ss_pred HHcCcccCCCccCCCcchhhcccCC
Confidence 9999999999999999999999986
No 10
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-44 Score=251.94 Aligned_cols=120 Identities=78% Similarity=1.178 Sum_probs=112.3
Q ss_pred CCCCCCC-CCCc-cCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceech
Q psy17762 3 GRGKGGK-AKAK-SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 80 (124)
Q Consensus 3 ~~gk~~~-~~~~-~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p 80 (124)
++||+|| ...+ ..|+|.++||+|||+||+|+|+.+++..||++.|+||++||||||++||+|+|+|.|+++++++|+|
T Consensus 3 ~~GKGgK~a~~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~P 82 (132)
T COG5262 3 SGGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIP 82 (132)
T ss_pred cCCcCcccccchhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceech
Confidence 4688888 3333 4678999999999999999999989999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhCchHHhhhhcCceeccCccCCCccccccCccccc
Q psy17762 81 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122 (124)
Q Consensus 81 ~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~ 122 (124)
+||++||+||+||++|+++|+|++|||+||||+.|+++.++|
T Consensus 83 rHlqlAIrnD~EL~~l~~~~tIa~GGvlp~I~~~ll~k~skK 124 (132)
T COG5262 83 RHLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKSSKK 124 (132)
T ss_pred HHHHHHhcCcHHHHHHhhhheeecCCcccccChhhhhhhhcc
Confidence 999999999999999999999999999999999999887766
No 11
>KOG1757|consensus
Probab=100.00 E-value=8.4e-40 Score=226.69 Aligned_cols=111 Identities=64% Similarity=0.931 Sum_probs=104.8
Q ss_pred CccCCCCcccccccchhhhhHHHhcCC-cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 12 AKSKTRSSRAGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 12 ~~~~s~s~ragl~fPv~ri~R~lk~~~-~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
.+.+|+|.|+||||||+||+|.|+... -..||+.++.||.+++||||++|+||+|+|.+++.+.++|||+|+++||+.|
T Consensus 18 ~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRGD 97 (131)
T KOG1757|consen 18 AKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 97 (131)
T ss_pred hhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecCc
Confidence 567999999999999999999999865 3599999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhcCceeccCccCCCccccccCcccccC
Q psy17762 91 EELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123 (124)
Q Consensus 91 ~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~~ 123 (124)
+|||.|++ .||+.|||+||||++|+.|+++++
T Consensus 98 eELDtLIk-~TiagGgViPhihk~l~~k~~~~~ 129 (131)
T KOG1757|consen 98 EELDTLIK-ATIAGGGVIPHIHKSLINKKGKKK 129 (131)
T ss_pred HHHHHHHH-HhhccCccccchHHHHhccccccC
Confidence 99999995 589999999999999999988764
No 12
>PLN00155 histone H2A; Provisional
Probab=99.89 E-value=7.4e-24 Score=131.69 Aligned_cols=58 Identities=71% Similarity=1.180 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHH
Q psy17762 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 58 (124)
Q Consensus 1 m~~~gk~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl 58 (124)
|+|+||+++..++..|+|++|||||||+||+|+|+++.|+.||+.+|||||+||||||
T Consensus 1 msg~g~g~~~~~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred CCCCCCCCccccCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 8998886666667899999999999999999999999999999999999999999996
No 13
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.59 E-value=1.4e-15 Score=98.33 Aligned_cols=73 Identities=41% Similarity=0.589 Sum_probs=67.5
Q ss_pred CcccccccchhhhhHHHhcCCcc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 18 SSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 18 s~ragl~fPv~ri~R~lk~~~~~-~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
+....+.||+.++.+-+..+.+. .||+.+|.++|.+++||++.+|++.|++.|.++++++|+|+||+.|++.|
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 45678899999999999997666 59999999999999999999999999999999999999999999999875
No 14
>PLN00035 histone H4; Provisional
Probab=99.59 E-value=1.6e-15 Score=104.67 Aligned_cols=86 Identities=24% Similarity=0.391 Sum_probs=75.7
Q ss_pred CCCCCCCCCC-------CCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy17762 1 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (124)
Q Consensus 1 m~~~gk~~~~-------~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~ 73 (124)
|+++||+|+. +++++.+.+-++ +|.+.|.|+++.++ +.|||.++...|..+||.++.+|+..|..+|+|.
T Consensus 1 m~~~~k~~~g~g~~g~kr~~k~~~d~i~~--ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA 77 (103)
T PLN00035 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCCCCCCCCCCCCcchHHHHHHHhhhcc--CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888886553 444555666667 77778999999998 9999999999999999999999999999999999
Q ss_pred CCceechhhHHHhhhC
Q psy17762 74 KKTRIIPRHLQLAIRN 89 (124)
Q Consensus 74 ~~k~I~p~~i~~AI~~ 89 (124)
++++|+++||.+|++.
T Consensus 78 ~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 78 RRKTVTAMDVVYALKR 93 (103)
T ss_pred CCCcCcHHHHHHHHHH
Confidence 9999999999999864
No 15
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=99.54 E-value=1.2e-14 Score=99.60 Aligned_cols=86 Identities=21% Similarity=0.386 Sum_probs=78.9
Q ss_pred cccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcCc
Q psy17762 21 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGV 100 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~~ 100 (124)
-.-.||++|++++|+.+.+..+|+..+||..+..||+|+.+|+.++++.|+..+.+|+|.++|..|+.+|+.|++|-...
T Consensus 20 ~ktrFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~~~ 99 (113)
T COG5247 20 KKTRFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKNME 99 (113)
T ss_pred hhhcCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred eeccCc
Q psy17762 101 TIAQGG 106 (124)
Q Consensus 101 ~i~~gg 106 (124)
.+..+-
T Consensus 100 ~~~~~~ 105 (113)
T COG5247 100 QFKNRE 105 (113)
T ss_pred HhcCCC
Confidence 554443
No 16
>PTZ00015 histone H4; Provisional
Probab=99.47 E-value=9.9e-14 Score=95.64 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=71.7
Q ss_pred CCCCCCCCC--------CCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17762 1 MSGRGKGGK--------AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72 (124)
Q Consensus 1 m~~~gk~~~--------~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~ 72 (124)
|+++||+++ .++++..+++-.+++. +.|.|+++.++ +.|||.++...+..+||.++.+|+..|..+|+|
T Consensus 1 ~~~~~k~~~~~~~~g~~kr~rk~~r~~i~gI~k--~~IrRLarr~G-vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeH 77 (102)
T PTZ00015 1 MSGMGKGKKSLGAKGGQKRQKKVLRDNIRGITK--GAIRRLARRGG-VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEY 77 (102)
T ss_pred CCCcccCCCccccccchhhHHHHHhhcccCCCH--HHHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 676666433 2444555666666555 56999999998 999999999999999999999999999999999
Q ss_pred CCCceechhhHHHhhh
Q psy17762 73 NKKTRIIPRHLQLAIR 88 (124)
Q Consensus 73 ~~~k~I~p~~i~~AI~ 88 (124)
+++++|+++||.+|++
T Consensus 78 A~RKTVt~~DV~~AlK 93 (102)
T PTZ00015 78 ARRKTVTAMDVVYALK 93 (102)
T ss_pred cCCCcccHHHHHHHHH
Confidence 9999999999999986
No 17
>KOG1659|consensus
Probab=99.32 E-value=2.9e-12 Score=97.87 Aligned_cols=77 Identities=19% Similarity=0.387 Sum_probs=74.1
Q ss_pred ccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
.-.||++||+++|+.+.+..+|...+||.+...||.|+.+|+..++..++..+.++++++||..||.+|+.|+||-.
T Consensus 11 ~trfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdFLk~ 87 (224)
T KOG1659|consen 11 KTRFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDFLKE 87 (224)
T ss_pred hccCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999974
No 18
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=99.27 E-value=1.4e-11 Score=77.90 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=58.3
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhh
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 87 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI 87 (124)
.||+++|+|+||......+||.+|...++.+.|.|+.+|...|...|.+.++++|+++||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5999999999999866889999999999999999999999999999999999999999999885
No 19
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=99.24 E-value=1e-11 Score=83.18 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=67.5
Q ss_pred CCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 11 KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 11 ~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
+++++-+++-+| +|.+.|.|+++.++ +.|||.++...+..+||.++.+|+..|..+|+|+++++|+++||.+|++.
T Consensus 2 r~r~~~~~~~~g--i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 2 RHRKVLRDNIKG--ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred chhHHHHHhhcc--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 344555666777 55566999999998 99999999999999999999999999999999999999999999999874
No 20
>smart00417 H4 Histone H4.
Probab=99.21 E-value=1.3e-11 Score=80.70 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=64.3
Q ss_pred CCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHh
Q psy17762 11 KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 86 (124)
Q Consensus 11 ~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~A 86 (124)
+++++-+.+-.|++ .+.|.|+++.++ +.|||.++...+..+||.++.+|+..|..+|+|.++++|+.+||..|
T Consensus 2 r~~~~~~d~i~gI~--k~~IrRLaRr~G-vkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 2 RHKKVLRDNIQGIT--KPAIRRLARRGG-VKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred chhHHHHhhhcCCC--HHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 34456666777755 456999999998 99999999999999999999999999999999999999999999764
No 21
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=99.21 E-value=2.3e-11 Score=82.37 Aligned_cols=67 Identities=30% Similarity=0.415 Sum_probs=63.1
Q ss_pred cccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 21 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..+.||+..|.|+|++.+ ..|||.+|...|..++|-++.+|.+.|...|.|.+|+||+++||++|+.
T Consensus 16 ~~~~Lp~apv~Ri~r~~~-~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~ 82 (91)
T COG2036 16 TDLLLPKAPVRRILRKAG-AERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALK 82 (91)
T ss_pred hhhhcCchHHHHHHHHHh-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 356789999999999987 7799999999999999999999999999999999999999999999985
No 22
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=99.18 E-value=7.4e-11 Score=75.28 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=61.1
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.+|.+.|.|+.+..| ..|||.++...|+..+||.+.+|+..|.++++|.+|++++++||+.|++
T Consensus 2 ~~p~~~i~ria~~~G-i~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAESLG-IGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHHCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 479999999999998 8899999999999999999999999999999999999999999999874
No 23
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=98.79 E-value=1e-08 Score=79.25 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=72.6
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhh
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~ 97 (124)
+.+|++||+++||.+....-|++.||+.++.+.|-|++|+.-.|+-.|+.++|.++.-.||..|+...+-|++|+
T Consensus 108 h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLi 182 (286)
T COG5208 108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLI 182 (286)
T ss_pred ccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHh
Confidence 459999999999999989999999999999999999999999999999999999999999999999999999999
No 24
>KOG3467|consensus
Probab=98.76 E-value=1.8e-08 Score=67.64 Aligned_cols=86 Identities=27% Similarity=0.430 Sum_probs=76.7
Q ss_pred CCCCCCCCCC-------CCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy17762 1 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (124)
Q Consensus 1 m~~~gk~~~~-------~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~ 73 (124)
|+++|+++|+ +++++-+++-+|++-|. |.|+.+.++ ..||+...-.....++.-++++++-.|..++.|.
T Consensus 1 Ms~r~~g~KG~~KG~AKrHRK~LsDnIqgitKpa--IRRlARr~G-VkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HA 77 (103)
T KOG3467|consen 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPA--IRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCcCccccccccchHHHHHHHHHhhccccchHH--HHHHHHhcC-cchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7888775554 55667778889999998 999999988 8999999999999999999999999999999999
Q ss_pred CCceechhhHHHhhhC
Q psy17762 74 KKTRIIPRHLQLAIRN 89 (124)
Q Consensus 74 ~~k~I~p~~i~~AI~~ 89 (124)
++++||..|+-.+++.
T Consensus 78 KRKTvT~~dvv~~LKR 93 (103)
T KOG3467|consen 78 KRKTVTAMDVVYALKR 93 (103)
T ss_pred hhceeeHHHHHHHHHH
Confidence 9999999999988763
No 25
>KOG1657|consensus
Probab=98.63 E-value=3.5e-08 Score=77.12 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhh
Q psy17762 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 95 (124)
Q Consensus 16 s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~ 95 (124)
....-....||++||+++||.+.....|+.+|||.++.++|+|+.|+...++..+..++++++.-.||..++.++.-|++
T Consensus 66 ~~~d~~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fdF 145 (236)
T KOG1657|consen 66 GQLDFKNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFDF 145 (236)
T ss_pred cccchhhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCccc
Confidence 33344467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCc
Q psy17762 96 LLSGV 100 (124)
Q Consensus 96 L~~~~ 100 (124)
|...+
T Consensus 146 L~Div 150 (236)
T KOG1657|consen 146 LRDIV 150 (236)
T ss_pred eeccc
Confidence 99643
No 26
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=98.37 E-value=1.1e-06 Score=61.92 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=57.1
Q ss_pred hhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 29 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 29 ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
-|+++|++.+ +.+++..++..|.-.++-++.+|+..|..+|+|+++++|+.+||++||..
T Consensus 6 ~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~ 65 (117)
T cd07979 6 VIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQS 65 (117)
T ss_pred HHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4899999987 88999999999999999999999999999999999999999999999974
No 27
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.36 E-value=1.5e-06 Score=56.21 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=57.9
Q ss_pred chhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 26 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 26 Pv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
+-..+..++++-.-..|++.+|...|..++|-|+.+|++.|...|+|.++++|.++||+++++.+
T Consensus 3 ~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 3 TKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred cHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 34456777777554689999999999999999999999999999999999999999999999865
No 28
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=98.08 E-value=1.2e-05 Score=52.40 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=55.3
Q ss_pred hhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 30 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 30 i~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
|.++++..| +.+++.+|...|+.++|-++.+|...+.++|++.+|+..++.||..|+.+
T Consensus 12 Vaqil~~~G-f~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 12 VAQILESAG-FDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 567888988 89999999999999999999999999999999999999999999999854
No 29
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=97.85 E-value=6.3e-05 Score=48.15 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=50.7
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.||..-|+-+...-| ...++.++.-.|+.=+||-+.||+..|.+..+|.+|++++++||+.|++
T Consensus 3 ~~~~esvk~iAes~G-i~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAESLG-ISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 477778888887777 5679999999999999999999999999999999999999999999974
No 30
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=97.78 E-value=5.8e-05 Score=61.68 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=54.9
Q ss_pred hhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 28 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 28 ~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.-|+-+++..+ ..+++.+|...|+..+||.+.+|++.|.+.++|.+|++++++||+.|++
T Consensus 3 ~~i~~ia~~~G-i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~ 62 (343)
T cd08050 3 ESIKLIAESLG-IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALR 62 (343)
T ss_pred hHHHHHHHHcC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 34566677766 7899999999999999999999999999999999999999999999987
No 31
>smart00428 H3 Histone H3.
Probab=97.75 E-value=7.3e-05 Score=51.91 Aligned_cols=67 Identities=25% Similarity=0.305 Sum_probs=57.9
Q ss_pred ccccchhhhhHHHhcCC--c----ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 22 GLQFPVGRIHRLLRKGN--Y----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~--~----~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+|-+|-.++.|+.++-. + ..|++++|...|..+.|.++.++++.|...|.|.++.+|+|+|+++|.+
T Consensus 27 ~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~r 99 (105)
T smart00428 27 DLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARR 99 (105)
T ss_pred ccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHH
Confidence 56777777777776521 1 4599999999999999999999999999999999999999999999854
No 32
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=97.41 E-value=0.00077 Score=45.06 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=55.2
Q ss_pred cchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCC---ceechhhHHHhhh
Q psy17762 25 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK---TRIIPRHLQLAIR 88 (124)
Q Consensus 25 fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~---k~I~p~~i~~AI~ 88 (124)
||-..++|++..- ....++.+..+.++++...|+.||+|.|.......+. ..|.|.||..|.+
T Consensus 17 f~k~~iKr~~~~~-~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 17 FPKAAIKRLIQSV-TGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred ccHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 7777799999985 4699999999999999999999999999987766544 6899999999875
No 33
>KOG0869|consensus
Probab=97.35 E-value=0.00062 Score=50.32 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=60.5
Q ss_pred cccchhhhhHHHhcCC-cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 23 LQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~-~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
--+|++-|-||||..- -..+|+.+|..-+--+.--|++-|.-.|...|...+||+|+.+||-+|+.
T Consensus 31 r~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~ 97 (168)
T KOG0869|consen 31 RFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMS 97 (168)
T ss_pred hhccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4599999999999964 35899999999999999999999999999999999999999999999986
No 34
>smart00427 H2B Histone H2B.
Probab=97.25 E-value=0.0011 Score=44.80 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=54.8
Q ss_pred hhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 28 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 28 ~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..|+|.|++-.-..-||+.|.-.+...+..+.+.|...|.+.++.+++.+|++++|+.|++
T Consensus 5 ~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr 65 (89)
T smart00427 5 IYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR 65 (89)
T ss_pred HHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 3588999987656788899999999999999999999999999999999999999999986
No 35
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=97.23 E-value=0.00048 Score=57.75 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=46.3
Q ss_pred CCccCCCCcccccccchhhhhHHHhcC----Cc-ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhh
Q psy17762 11 KAKSKTRSSRAGLQFPVGRIHRLLRKG----NY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82 (124)
Q Consensus 11 ~~~~~s~s~ragl~fPv~ri~R~lk~~----~~-~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~ 82 (124)
+.+++|+-......+|.+.|++++..- .+ ..+|+.+|.-.|..++|||...+-+--..||.|+|||+|.+.|
T Consensus 338 k~~k~Skhgi~~P~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 338 KQKKVSKHGIPYPSLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp --------------S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 556777777778889999999988663 22 3899999999999999999999999888999999999999876
No 36
>PLN00158 histone H2B; Provisional
Probab=97.16 E-value=0.0014 Score=46.14 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=55.3
Q ss_pred hhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 28 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 28 ~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..|+|.|++-.-..-||..|.-.+...+..+.+.|...|...++.+++.+|++++|+.|++
T Consensus 31 ~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvr 91 (116)
T PLN00158 31 IYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVR 91 (116)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 4699999996656778888999999999999999999999999999999999999999987
No 37
>PTZ00463 histone H2B; Provisional
Probab=97.02 E-value=0.0023 Score=45.18 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=54.6
Q ss_pred hhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 28 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 28 ~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..|++.|++-.-..-||..|.-.+...+.-+.+.|...|...|+.+++.+|++++|+.|++
T Consensus 32 ~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvr 92 (117)
T PTZ00463 32 LYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIR 92 (117)
T ss_pred HHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 3699999996656778888998899999999999999999999999999999999999997
No 38
>KOG3219|consensus
Probab=96.83 E-value=0.0014 Score=49.95 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=56.3
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC-CceechhhHHHhhhC
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIRN 89 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~-~k~I~p~~i~~AI~~ 89 (124)
.-||-+.|+++|..-. ..-|+..+.++++++-.-|+-||+|.|.......+ ...+.|.||..|.+.
T Consensus 111 s~f~Ka~iKkL~~~it-g~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rr 177 (195)
T KOG3219|consen 111 SAFPKAQIKKLMSSIT-GQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRR 177 (195)
T ss_pred hcCCHHHHHHHHHHHh-CCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 4599999999999853 55599999999999999999999999998776554 446999999999863
No 39
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=96.81 E-value=0.0064 Score=39.85 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHhCCCceechhhHHHhhhCchHH
Q psy17762 46 GAPVYLAAVMEYLAAEVLELAG---NAARDNKKTRIIPRHLQLAIRNDEEL 93 (124)
Q Consensus 46 ~A~v~LaavLEyl~~eIlelA~---~~a~~~~~k~I~p~~i~~AI~~d~eL 93 (124)
-++.|++++.|..-..+-.++. ..|+|.||++|+++|+.+..+.++.|
T Consensus 26 ~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~~L 76 (76)
T PF15630_consen 26 VSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNPSL 76 (76)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-HHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCCCC
Confidence 4688889988888888777765 47899999999999999999999876
No 40
>KOG0871|consensus
Probab=96.78 E-value=0.0046 Score=45.32 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=63.7
Q ss_pred cccccccchhhhhHHHhcCCc-ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 19 SRAGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 19 ~ragl~fPv~ri~R~lk~~~~-~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
+.-.+.+|-+-|..++++.-. .-||..+|-..|-.+.=+|+.-|.-.|...|+...+++|.|+|+..|+.+
T Consensus 7 ~dde~sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~ 78 (156)
T KOG0871|consen 7 EDDELSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALEN 78 (156)
T ss_pred ccccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHH
Confidence 344789999999999999764 58999999999999999999999999999999999999999999999864
No 41
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=96.74 E-value=0.0033 Score=42.53 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=47.5
Q ss_pred ccchhhhhHHHhcCCcc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC-CceechhhHHHhhh
Q psy17762 24 QFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIR 88 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~-~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~-~k~I~p~~i~~AI~ 88 (124)
.||-+.|++++..- .. .-|+....+.++++--.|+.||+|.|.......+ ...|+|.||..|.+
T Consensus 23 ~~~k~~ikkli~~~-~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~r 88 (90)
T PF04719_consen 23 SFNKAAIKKLINQV-LGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYR 88 (90)
T ss_dssp ---HHHHHHHHHHH-HS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 37778899999984 35 8999999999999999999999999998775544 45799999998864
No 42
>PLN00163 histone H4; Provisional
Probab=96.68 E-value=0.00049 Score=42.91 Aligned_cols=45 Identities=40% Similarity=0.673 Sum_probs=35.4
Q ss_pred CCCCCCCCC-------CCCccCCCCcccccccchhhhhHHHhcCCcccccCCChH
Q psy17762 1 MSGRGKGGK-------AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAP 48 (124)
Q Consensus 1 m~~~gk~~~-------~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~ 48 (124)
|+++||+++ .+++++.+.+-.+++-|. |.|+.+.++ ..|||...-
T Consensus 1 m~g~gkggkglGkggaKRhrk~lrd~i~gItKpa--IrRLARRgG-VKRIs~~iY 52 (59)
T PLN00163 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPA--IRRLARRGG-VKRISGLIY 52 (59)
T ss_pred CCCCCCCCCccCCccchhHHHHHHHhhcccchHH--HHHHHHhcC-ceeecchhh
Confidence 888877544 355566777788999998 999999988 899998643
No 43
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=96.57 E-value=0.0091 Score=38.51 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=52.7
Q ss_pred hhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 30 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 30 i~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
|.++++..+ +..++.+|...|+.+++.++.+|...+-.+|++.+|...++.|+..|+.
T Consensus 12 va~il~~~G-F~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 12 VAQILKHAG-FDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred HHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 456777777 7899999999999999999999999999999999999999999998874
No 44
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=96.49 E-value=0.011 Score=42.35 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=42.1
Q ss_pred hhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 27 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 27 v~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+--|+-+|++.+. ......++.-|.-..--++.+||+.|..+|.|.++..|+..||++||.
T Consensus 15 a~~i~~iL~~~Gv-~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~ 75 (129)
T PF02291_consen 15 ARVIHLILKSMGV-TEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQ 75 (129)
T ss_dssp HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH
T ss_pred HHHHHHHHHHcCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHH
Confidence 3457889999872 223333333343444446888999999999999999999999999998
No 45
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=96.40 E-value=0.012 Score=37.70 Aligned_cols=62 Identities=15% Similarity=0.314 Sum_probs=48.9
Q ss_pred hhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 29 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 29 ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
++..++++-.-...+..++...|..+.+-|+..++..|+..|+|.+..++.+.||++.++.+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler~ 65 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLERN 65 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhh
Confidence 45667777656789999999999999999999999999999999999999999999988654
No 46
>PLN00161 histone H3; Provisional
Probab=96.30 E-value=0.0092 Score=43.15 Aligned_cols=67 Identities=27% Similarity=0.241 Sum_probs=57.2
Q ss_pred ccccchhhhhHHHhcCC-----cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 22 GLQFPVGRIHRLLRKGN-----YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~-----~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+|-+|-..+.|+.++-- ...|+..+|...|--+-|.++-.++|.|.-.|.|.++-+|.|.|++++.+
T Consensus 53 ~lLIpklPF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~r 124 (135)
T PLN00161 53 ELLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARR 124 (135)
T ss_pred ccccccccHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHH
Confidence 56677777777776531 23789999999999999999999999999999999999999999999865
No 47
>PLN00160 histone H3; Provisional
Probab=96.21 E-value=0.01 Score=40.71 Aligned_cols=67 Identities=27% Similarity=0.237 Sum_probs=57.1
Q ss_pred ccccchhhhhHHHhcC-----CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 22 GLQFPVGRIHRLLRKG-----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~-----~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+|-+|-.++.|+.++- ....|+..+|...|--+-|.++-.++|.+...|.|.++-+|.|.|++++.+
T Consensus 19 ~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~r 90 (97)
T PLN00160 19 DLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARR 90 (97)
T ss_pred hhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHH
Confidence 5667777777777653 123799999999999999999999999999999999999999999999854
No 48
>KOG1658|consensus
Probab=96.13 E-value=0.0045 Score=45.67 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=68.9
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
.++|++||+.+++-.....-....+...++...|-++.++-..++..+....++++.-+++..||..-+|+.+|..
T Consensus 58 ~rLpL~rik~vvkl~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~de~~fle~ 133 (162)
T KOG1658|consen 58 SRLPLARIKQVVKLDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVDEFAFLEG 133 (162)
T ss_pred hhccHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchHHHHHHhh
Confidence 6899999999999987667777778888889999999999999999999999999999999999999999988874
No 49
>PTZ00018 histone H3; Provisional
Probab=96.08 E-value=0.012 Score=42.66 Aligned_cols=67 Identities=25% Similarity=0.260 Sum_probs=57.5
Q ss_pred ccccchhhhhHHHhcC----CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 22 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~----~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+|-+|-..|.|+.++- ....|+..+|...|--+-|.++-.++|.+...|.|.++-+|.+.|++++.+
T Consensus 60 ~lLI~k~pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~r 130 (136)
T PTZ00018 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_pred hhccccccHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHH
Confidence 5567777788877763 124799999999999999999999999999999999999999999999853
No 50
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=96.03 E-value=0.042 Score=35.59 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=47.9
Q ss_pred chhhhhHHHhcC--CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCce-echhhHHHh
Q psy17762 26 PVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR-IIPRHLQLA 86 (124)
Q Consensus 26 Pv~ri~R~lk~~--~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~-I~p~~i~~A 86 (124)
|..-|.|+|+.. ...-||+.+|-..++..|+-|+.|-+-.|...+...+... |..+||+..
T Consensus 1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki 64 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKI 64 (72)
T ss_dssp -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 445577888752 2468999999999999999999999999999999988888 999999874
No 51
>PLN00121 histone H3; Provisional
Probab=95.87 E-value=0.012 Score=42.66 Aligned_cols=67 Identities=25% Similarity=0.254 Sum_probs=57.5
Q ss_pred ccccchhhhhHHHhcCC----cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 22 GLQFPVGRIHRLLRKGN----YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~----~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+|-+|-..+.|+.++-. ...|+..+|...|--+-|.++-.++|.+.-.|.|.++-+|.+.|++++.+
T Consensus 60 ~lLI~k~pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~r 130 (136)
T PLN00121 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_pred ccccccccHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHH
Confidence 56677777777776621 24799999999999999999999999999999999999999999999853
No 52
>KOG1744|consensus
Probab=95.31 E-value=0.099 Score=37.45 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=52.8
Q ss_pred cccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 19 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 19 ~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..-...++|-+ .|++---.--|+..|.-.+.+.+-.+.+.|+..|+..|+.+++.+|+.++|+.|++
T Consensus 35 ~~e~~s~yv~k---vlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~r 101 (127)
T KOG1744|consen 35 RKESYSEYVYK---VLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVR 101 (127)
T ss_pred ccCceeeehhh---hhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHH
Confidence 33345666544 66664322348888998899988888999999999999999999999999999885
No 53
>KOG0870|consensus
Probab=95.17 E-value=0.068 Score=39.92 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=58.1
Q ss_pred cccccchhhhhHHHhcCCcc---cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 21 AGLQFPVGRIHRLLRKGNYA---ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~~~---~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.-|-||.+=|.|+.++- +- --|+.+|...|+-.---|+..+.-.|...|..+++++|++.|+-.|+.
T Consensus 7 ~dl~lP~AiI~rlvke~-l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEV-LPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHhhccHHHHHHHHHHh-CccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 35789999999988884 33 447888999998888889999999999999999999999999999985
No 54
>KOG1745|consensus
Probab=93.95 E-value=0.054 Score=39.26 Aligned_cols=64 Identities=25% Similarity=0.243 Sum_probs=52.3
Q ss_pred cchhhhhHHHh----cCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 25 FPVGRIHRLLR----KGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 25 fPv~ri~R~lk----~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
++-.++.|+.+ +..-.-|+.++|...|--..|.++-.++|.+.-.|.|.++-+|.|.||++|.+
T Consensus 64 I~K~PFqRlvrei~q~f~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArr 131 (137)
T KOG1745|consen 64 IRKLPFQRLVREIAQDFKTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 131 (137)
T ss_pred hhcCcHHHHhHHHHhcccccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhh
Confidence 33344455544 33345899999999999999999999999999999999999999999999865
No 55
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=93.94 E-value=0.059 Score=36.34 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=18.1
Q ss_pred hHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHH
Q psy17762 31 HRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 93 (124)
Q Consensus 31 ~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL 93 (124)
..+|---|+...-..++...+-.++--.+.+++..|...|...|+++|+.+|+..++++|+.-
T Consensus 8 ~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~K 70 (93)
T PF02269_consen 8 RQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKK 70 (93)
T ss_dssp HHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHH
Confidence 344444444444444455555544444455556666677777788899999999999999753
No 56
>KOG1142|consensus
Probab=93.86 E-value=0.081 Score=42.02 Aligned_cols=68 Identities=10% Similarity=0.207 Sum_probs=59.7
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCch
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~ 91 (124)
.+-.-.++-++++-.-...+..++-.+|.-+.+-|++.|+..|+..|+|.+..+|..+||++.++++.
T Consensus 154 il~k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~ 221 (258)
T KOG1142|consen 154 ILSKRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNF 221 (258)
T ss_pred cccccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccc
Confidence 34455677888875546889999999999999999999999999999999999999999999998874
No 57
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=93.70 E-value=0.39 Score=32.41 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=36.5
Q ss_pred hhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 30 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 30 i~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
|..+|---|+...-...+...+-.++--++.+++-.|...|. .++.+++++|+..++++|+.
T Consensus 8 i~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 8 IRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHH
Confidence 445555444444433344444443333334444445555555 46667899999999999975
No 58
>KOG3334|consensus
Probab=92.84 E-value=0.47 Score=34.74 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=46.3
Q ss_pred hhHHHhcCCcccccCCChHHHHHHHHHH---HHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 30 IHRLLRKGNYAERVGAGAPVYLAAVMEY---LAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 30 i~R~lk~~~~~~rvs~~A~v~LaavLEy---l~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
|.-+|++-+ |.+.-+-.+.-.||+ .+..||+.|.=+++|.++.+|..+|+++|+..
T Consensus 19 i~~iL~s~G----I~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~ 77 (148)
T KOG3334|consen 19 IASILKSLG----IQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQM 77 (148)
T ss_pred HHHHHHHcC----ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 777888866 556666667777776 56779999999999999999999999999964
No 59
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.89 E-value=2.6 Score=30.33 Aligned_cols=61 Identities=25% Similarity=0.275 Sum_probs=48.5
Q ss_pred hhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceech---hhHHHhhhCc
Q psy17762 29 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP---RHLQLAIRND 90 (124)
Q Consensus 29 ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p---~~i~~AI~~d 90 (124)
-|+-+|+.-+ ..-.+...+.-|-..---.+..+++-|.-+|++.|+..|++ +|+++|+..-
T Consensus 19 lihliL~Slg-i~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~ 82 (145)
T COG5094 19 LIHLILRSLG-IEEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATK 82 (145)
T ss_pred HHHHHHHhcC-chhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHH
Confidence 3777777755 45556667777777777788999999999999999988887 9999999753
No 60
>PF15510 CENP-W: Centromere kinetochore component W
Probab=86.30 E-value=2.3 Score=28.99 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=46.2
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHH--------------HHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVY--------------LAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~--------------LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.-|-+.++|++++..-.-|+..++-.. +.--.=.|+..+.|.|-..|..++-..|.++|+..|-+
T Consensus 16 kaPrgfLkrv~Kr~KphlRl~~~~Dllv~~~~f~~~~~~~~vhLncLLFvhrLAEEaRtnA~EnK~~~Ik~~Hv~AaaK 94 (102)
T PF15510_consen 16 KAPRGFLKRVFKRQKPHLRLETSGDLLVRFCPFSGWQWGGEVHLNCLLFVHRLAEEARTNACENKCGTIKKEHVLAAAK 94 (102)
T ss_pred hCchHHHHHHHHhcCCceeecccccHHHhhcccccccccceeehhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 468899999999766677777655433 11111235667888888777777888999999987753
No 61
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=85.29 E-value=3.4 Score=29.79 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=43.4
Q ss_pred ccccchhhhhHHHhcCCc-ccccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 22 GLQFPVGRIHRLLRKGNY-AERVGAGA-PVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~~-~~rvs~~A-~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
++.+|-+-|....-+.-. .--+..+| -+++.+++||+- -+.-.|...|.+..+++|.++||-.|+.|
T Consensus 9 e~sLPKATVqKMvS~iLp~dl~ftKearei~in~cieFi~-~lsseAne~ce~EaKKTIa~EHviKALen 77 (148)
T COG5150 9 ENSLPKATVQKMVSSILPKDLVFTKEAREIFINACIEFIN-MLSSEANEACEEEAKKTIAYEHVIKALEN 77 (148)
T ss_pred cccCcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 567777777766554321 12334444 456666666553 34445667778888899999999999865
No 62
>KOG2549|consensus
Probab=79.51 E-value=6 Score=34.84 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=52.8
Q ss_pred hhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 27 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 27 v~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
-..++-+.+.-+ ...++.+++-.|+-=+||=+.||...|.+.-.+.+|.+.|-.||+.|++
T Consensus 14 ~Es~k~vAEslG-i~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr 74 (576)
T KOG2549|consen 14 KESVKVVAESLG-ITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALR 74 (576)
T ss_pred HHHHHHHHHHhC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHh
Confidence 344444445545 6789999999999999999999999999999999999999999999997
No 63
>COG5251 TAF40 Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=79.32 E-value=2.6 Score=31.92 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=53.1
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhC-CCceechhhHHHhhhC
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIRN 89 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~-~~k~I~p~~i~~AI~~ 89 (124)
-||-..|+.+.-. ...+-|+....++|+++-.-|+-||+|+|...-+.- ......|.|+..|++-
T Consensus 115 ~lnKt~VKKlast-V~nQtVspNi~I~l~g~~KVfvGEiIElA~~Vq~~w~~sgpl~p~h~reayr~ 180 (199)
T COG5251 115 SLNKTQVKKLAST-VANQTVSPNIRIFLQGVGKVFVGEIIELAMIVQNKWLTSGPLIPFHKREAYRY 180 (199)
T ss_pred CCCHHHHHHHHHH-HhccccCCCeeeeeechhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Confidence 4777888887776 357899999999999999999999999997755443 3346899999999863
No 64
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=78.39 E-value=2 Score=24.70 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=25.2
Q ss_pred HHHHHHhCCCceechhhHHHhhhCch--HHhhhhc
Q psy17762 66 AGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 98 (124)
Q Consensus 66 A~~~a~~~~~k~I~p~~i~~AI~~d~--eL~~L~~ 98 (124)
|-..|...+...|+++||-+|+-.|+ ....+|+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~ 35 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILK 35 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHH
Confidence 45678888889999999999987665 6666665
No 65
>KOG4336|consensus
Probab=77.59 E-value=9.5 Score=31.26 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=67.3
Q ss_pred hhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC----chHHhhhhcCceec--
Q psy17762 30 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN----DEELNKLLSGVTIA-- 103 (124)
Q Consensus 30 i~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~----d~eL~~L~~~~~i~-- 103 (124)
|.-++++.+ +.-|+..|-.-|.-++.-.+.+|...+-++|.+.||.--|+-||.+...+ =..|...|++-.++
T Consensus 11 V~~Ll~~~g-fd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI~v~sL~~~~q~~~~sl~ 89 (323)
T KOG4336|consen 11 VSNLLKTKG-FDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNIKVSSLYAYFQKQEFSLW 89 (323)
T ss_pred HHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCCChhhhHHHHHhccchhh
Confidence 566777766 77799999999999999999999999999999999999999999887652 35778888877774
Q ss_pred -cCccCCCcccc
Q psy17762 104 -QGGVLPNIQAV 114 (124)
Q Consensus 104 -~gg~~p~~~~~ 114 (124)
..-.+|+....
T Consensus 90 ~~~~~aP~~~~q 101 (323)
T KOG4336|consen 90 SVLIAAPENQEQ 101 (323)
T ss_pred hccccCCCcCCc
Confidence 45556665554
No 66
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=73.46 E-value=4.6 Score=27.15 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=39.2
Q ss_pred cccCCChHHHHHHHHHHHH------HHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 41 ERVGAGAPVYLAAVMEYLA------AEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 41 ~rvs~~A~v~LaavLEyl~------~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..++..+..+|..+++-+. .-||.+|...|.-.+...|++.||..|+.
T Consensus 41 ~~l~~~~~~~l~~~~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 41 CPLSSEAKKLLEQAAEKLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred cCCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 4566677777777777653 45999999999999999999999999974
No 67
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=66.90 E-value=20 Score=20.86 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCceechhhHHHh
Q psy17762 61 EVLELAGNAARDNKKTRIIPRHLQLA 86 (124)
Q Consensus 61 eIlelA~~~a~~~~~k~I~p~~i~~A 86 (124)
.+=..+-.+|...|...||++++..|
T Consensus 19 ~~r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 19 KLRDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp HHHHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeECHHHHHhh
Confidence 33445557899999999999999865
No 68
>KOG3901|consensus
Probab=65.52 E-value=12 Score=26.15 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCceechhhHHHhhhCchH
Q psy17762 51 LAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 51 LaavLEyl~~eIlelA~~~a~~~-~~k~I~p~~i~~AI~~d~e 92 (124)
+...=++++..|.++ .+.|... ++-++.-+|+..+|+.|+-
T Consensus 33 v~~Le~iV~~Yi~el-t~~a~~~g~rgk~~veD~~f~lRkDpk 74 (109)
T KOG3901|consen 33 VDLLEDIVLEYITEL-THAAMEIGKRGKVKVEDFKFLLRKDPK 74 (109)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhcccCceeHHHHHHHHHhChH
Confidence 333334444555555 4445444 4456899999999999974
No 69
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.08 E-value=26 Score=29.28 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=45.8
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 40 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 40 ~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
...|..++.-.|+-=|||=+.||.+.|.+.-.|.+|..+|-.||..|.+
T Consensus 20 i~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr 68 (450)
T COG5095 20 ISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALR 68 (450)
T ss_pred CcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHH
Confidence 4678889999999999999999999999999999999999999999987
No 70
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=16 Score=30.31 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=54.2
Q ss_pred cccccccch---hhhhHHHhcCC----cccccCCChHHHHHHHHHHHH------HHHHHHHHHHHHhCCCceechhhHHH
Q psy17762 19 SRAGLQFPV---GRIHRLLRKGN----YAERVGAGAPVYLAAVMEYLA------AEVLELAGNAARDNKKTRIIPRHLQL 85 (124)
Q Consensus 19 ~ragl~fPv---~ri~R~lk~~~----~~~rvs~~A~v~LaavLEyl~------~eIlelA~~~a~~~~~k~I~p~~i~~ 85 (124)
...++.||. ..++-+|++.. ....++.++..+.++.-.+-. .+++..|++.|...+..++++.|+..
T Consensus 181 ~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~ 260 (366)
T COG1474 181 GPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVRE 260 (366)
T ss_pred CcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Confidence 334577886 67777776642 236677777777776655544 67999999999999999999999999
Q ss_pred hhhCchHH
Q psy17762 86 AIRNDEEL 93 (124)
Q Consensus 86 AI~~d~eL 93 (124)
| ..+.|.
T Consensus 261 a-~~~~~~ 267 (366)
T COG1474 261 A-QEEIER 267 (366)
T ss_pred H-HHHhhH
Confidence 9 334343
No 71
>KOG1658|consensus
Probab=62.69 E-value=15 Score=27.31 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=55.0
Q ss_pred cccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcC
Q psy17762 21 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 99 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~ 99 (124)
+..-||++.++++-+.+-...--+..|-+..+...|.|+.-...++. ..-.+..-.-|+..+..|++|..+-..
T Consensus 8 ~~p~~p~ekvkkiak~dPey~~te~~a~~etafatE~fvq~lv~~p~-----a~l~rLpL~rik~vvkl~pdl~l~~de 81 (162)
T KOG1658|consen 8 CSPKLPMEKVKKIAKNDPEYMDTEDDAFVETAFATEQFVQVLVHLPQ-----ASLSRLPLARIKQVVKLDPDLTLLNDE 81 (162)
T ss_pred hCccccHHHHHHhhcCCchhhhcccchHHHHHHHHHHHHhhhhhhhh-----hhhhhccHHHHHhhccCCcchhhhhhH
Confidence 35679999999999997644445677777889999999888777554 233466777788888888887766543
No 72
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=60.64 E-value=5.3 Score=24.25 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=17.8
Q ss_pred CchHHhhhhcCceeccCccCCCccc
Q psy17762 89 NDEELNKLLSGVTIAQGGVLPNIQA 113 (124)
Q Consensus 89 ~d~eL~~L~~~~~i~~gg~~p~~~~ 113 (124)
.|+||+.+++.. .+||++.|-+
T Consensus 16 s~eELd~ilGg~---g~Gv~~Tis~ 37 (51)
T PF04604_consen 16 SDEELDQILGGA---GNGVIKTISH 37 (51)
T ss_pred CHHHHHHHhCCC---CCCceeeccc
Confidence 799999999865 7788887654
No 73
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=59.96 E-value=15 Score=28.58 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=36.0
Q ss_pred hhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy17762 28 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNA 69 (124)
Q Consensus 28 ~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~ 69 (124)
.|+..+..+.++ .=|+.+|+.+|...||+++.+|++-+...
T Consensus 210 ~Rm~~ia~e~GL-~gvs~~~a~ll~~ale~~LK~lI~s~l~~ 250 (252)
T PF12767_consen 210 KRMEQIAWEHGL-GGVSDDCANLLNLALEVHLKNLIKSCLDL 250 (252)
T ss_pred HHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777888787 78999999999999999999999988764
No 74
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=58.05 E-value=45 Score=26.53 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=42.0
Q ss_pred cccch---hhhhHHHhcCC----cccccCCChHHHHHHHHHH------HHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 23 LQFPV---GRIHRLLRKGN----YAERVGAGAPVYLAAVMEY------LAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 23 l~fPv---~ri~R~lk~~~----~~~rvs~~A~v~LaavLEy------l~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+.||. ..+..+|+..- ...-++.++..+++...+. .+..++..|...|...+...|+++|++.|+.
T Consensus 194 i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~ 272 (365)
T TIGR02928 194 IIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQE 272 (365)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45553 33555565421 1123566666676666552 3445777888888777888899999998764
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=57.30 E-value=45 Score=26.87 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=42.7
Q ss_pred ccccc---hhhhhHHHhcC---C-cccccCCChHHHHHHHHHHH------HHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 22 GLQFP---VGRIHRLLRKG---N-YAERVGAGAPVYLAAVMEYL------AAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 22 gl~fP---v~ri~R~lk~~---~-~~~rvs~~A~v~LaavLEyl------~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.+.|| ...+..+|+.. . ...-++.++..+++...... +..++..|...|...+...|+.+|++.|+.
T Consensus 201 ~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 201 EIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 35554 35555555542 1 11245666666666655431 235567777778777888999999999886
Q ss_pred C
Q psy17762 89 N 89 (124)
Q Consensus 89 ~ 89 (124)
.
T Consensus 281 ~ 281 (394)
T PRK00411 281 K 281 (394)
T ss_pred H
Confidence 3
No 76
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=54.99 E-value=16 Score=31.63 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
+.+||..|..+|...+...|+.+||+.||+.
T Consensus 475 l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 475 LADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 4778888999999999999999999999963
No 77
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=53.13 E-value=49 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 60 AEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 60 ~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..|+..|...|...+...|+++|++.|++
T Consensus 361 ~~llR~A~~iA~~~~~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 361 GGLVRAAGDIAKSSGKVYVTAEHVLKAKK 389 (608)
T ss_pred HHHHHHHHHHHHhcCCceecHHHHHHHHH
Confidence 45777777778788888999999999876
No 78
>KOG0787|consensus
Probab=52.68 E-value=6.8 Score=33.13 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCceechhhHHHhhh-CchHHhhhhcCceeccCccCCC
Q psy17762 47 APVYLAAVMEYLAAEVLELAGNAARD-NKKTRIIPRHLQLAIR-NDEELNKLLSGVTIAQGGVLPN 110 (124)
Q Consensus 47 A~v~LaavLEyl~~eIlelA~~~a~~-~~~k~I~p~~i~~AI~-~d~eL~~L~~~~~i~~gg~~p~ 110 (124)
..||+-..|+|++-||++-|.++.-. .+....-+.+|+..|. +|+++...+.| .||.+|+
T Consensus 253 ~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISD----rGGGV~~ 314 (414)
T KOG0787|consen 253 FTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISD----RGGGVPH 314 (414)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEec----CCCCcCh
Confidence 33689999999999999999886633 3443333667777766 55554443333 6666664
No 79
>PHA02669 hypothetical protein; Provisional
Probab=49.35 E-value=31 Score=26.11 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy17762 47 APVYLAAVMEYLAAEVLEL 65 (124)
Q Consensus 47 A~v~LaavLEyl~~eIlel 65 (124)
|.+||+++.=||+-||--.
T Consensus 12 avi~LTgAaiYlLiEiGLA 30 (210)
T PHA02669 12 AVIYLTGAAIYLLIEIGLA 30 (210)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6789999999999997433
No 80
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=48.66 E-value=19 Score=24.83 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHHHHHHH-------HHHHHHHHHhCCCceechhhHHHhhh--CchHHhhhhc
Q psy17762 45 AGAPVYLAAVMEYLAAEV-------LELAGNAARDNKKTRIIPRHLQLAIR--NDEELNKLLS 98 (124)
Q Consensus 45 ~~A~v~LaavLEyl~~eI-------lelA~~~a~~~~~k~I~p~~i~~AI~--~d~eL~~L~~ 98 (124)
+.+.+||.++||---.+. +..+...++-..+..++-++|-.+.+ .|+.|+.++.
T Consensus 21 e~ia~yL~~~le~~d~a~i~~alg~var~~GMsqvA~~aGlsRe~LYkaLS~~GNPtf~Til~ 83 (100)
T COG3636 21 EAIAAYLNAALEEGDPALIAAALGVVARSRGMSQVARKAGLSREGLYKALSPGGNPTFDTILA 83 (100)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCHHHHHHHhCccHHHHHHHhCCCCCCcHHHHHH
Confidence 457788888887432222 33333344444455689999999998 5688887773
No 81
>PF09123 DUF1931: Domain of unknown function (DUF1931); InterPro: IPR015207 This entry represents a set of hypothetical bacterial proteins containing a core of six alpha-helices, where one central helix is surrounded by the other five. The exact function of this family has not, as yet, been determined []. ; PDB: 1WWS_A 1WWI_A 1R4V_A.
Probab=48.16 E-value=7.9 Score=28.14 Aligned_cols=54 Identities=26% Similarity=0.331 Sum_probs=35.1
Q ss_pred hHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHH
Q psy17762 31 HRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 85 (124)
Q Consensus 31 ~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~ 85 (124)
+|+++... .--|..+-.--+..++|--+.+++..|...|+.+||..|.|.|+-+
T Consensus 2 e~lFR~aa-~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~ngRdvI~~~DLPI 55 (138)
T PF09123_consen 2 ERLFRKAA-GLDVDKNDAKRYSDFVEKKLYDLLLVAQENAKANGRDVIEPRDLPI 55 (138)
T ss_dssp HHHHHHHH-S----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTT-SEE-GGGS--
T ss_pred hHHHHHHh-ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeccccCCc
Confidence 34555432 3334455555677788888888999999999999999999999754
No 82
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.26 E-value=50 Score=29.68 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCceechhhHHHhhhCchHH
Q psy17762 61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 93 (124)
Q Consensus 61 eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL 93 (124)
.|+..|+..|...+++-|+++|++.|+++....
T Consensus 370 ~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~ 402 (647)
T COG1067 370 NLVREAGDIAVSEGRKLITAEDVEEALQKRELR 402 (647)
T ss_pred HHHHHhhHHHhcCCcccCcHHHHHHHHHhhhhH
Confidence 456688899999899999999999999985433
No 83
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=44.61 E-value=61 Score=24.54 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=41.7
Q ss_pred CCcccccccchhhhh----HHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy17762 17 RSSRAGLQFPVGRIH----RLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (124)
Q Consensus 17 ~s~ragl~fPv~ri~----R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~ 73 (124)
++....+.|....+. +++.+.++. -++.+...+|+.++|-.+..|++.+...+.|-
T Consensus 37 ~~~~~~~fl~~~~l~~~~~~i~~~~g~~-~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR 96 (212)
T cd08045 37 RSQKDPSFLNPSPLAKKIRKIAKKHGLK-EVDEDVLDLISLALEERLRNLLEKLIEVSEHR 96 (212)
T ss_pred cccchhhccCHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445666665555 445555533 78999999999999999999999999888774
No 84
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=43.20 E-value=62 Score=24.85 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=39.0
Q ss_pred hhhhhHHHhcC--CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 27 VGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 27 v~ri~R~lk~~--~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
...+.+|+++. .....|+.+|..+|...++.=+..+.-..-+.+...+.+.|+.+||+..+..+.+
T Consensus 113 ~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~ 180 (302)
T TIGR01128 113 EQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSAR 180 (302)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhc
Confidence 34444555442 1346799999999988876433333222223332333346999999988875554
No 85
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=42.78 E-value=84 Score=22.17 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=37.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC-CceechhhHHHhhhCchHH
Q psy17762 42 RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIRNDEEL 93 (124)
Q Consensus 42 rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~-~k~I~p~~i~~AI~~d~eL 93 (124)
-+-.-++.-..+.=||++..+.+++.+.++.++ +-.+.-+|...|.+.|+.=
T Consensus 24 Dvv~P~~dt~~~L~e~V~dY~~~~ctna~~~Aq~rnK~k~eDfkfaLr~DpkK 76 (126)
T COG5248 24 DVVAPRYDTAEALHEYVLDYMSILCTNAHNMAQVRNKTKTEDFKFALRRDPKK 76 (126)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhChHH
Confidence 344455666667778888888888877665543 3356889999999999753
No 86
>smart00350 MCM minichromosome maintenance proteins.
Probab=42.76 E-value=55 Score=28.09 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=48.7
Q ss_pred cccchhhhhHHHhcCC--cccccCCChHHHHHHHHHHHH-------------------HHHHHHHHHHHHhCCCceechh
Q psy17762 23 LQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLA-------------------AEVLELAGNAARDNKKTRIIPR 81 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~--~~~rvs~~A~v~LaavLEyl~-------------------~eIlelA~~~a~~~~~k~I~p~ 81 (124)
..++...+.+++.-.+ ....++..+..||......+= ..++.+|-..|.-..+..++++
T Consensus 416 ~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~ 495 (509)
T smart00350 416 VPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEA 495 (509)
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 3577777887776654 236788888888866544432 4467778788888899999999
Q ss_pred hHHHhhh
Q psy17762 82 HLQLAIR 88 (124)
Q Consensus 82 ~i~~AI~ 88 (124)
|++.||.
T Consensus 496 Dv~~ai~ 502 (509)
T smart00350 496 DVEEAIR 502 (509)
T ss_pred HHHHHHH
Confidence 9999985
No 87
>COG4430 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.09 E-value=25 Score=27.08 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHH--HHHHH-HhCCCceechhhHHHhhhCchHHhhhhcCc
Q psy17762 53 AVMEYLAAEVLEL--AGNAA-RDNKKTRIIPRHLQLAIRNDEELNKLLSGV 100 (124)
Q Consensus 53 avLEyl~~eIlel--A~~~a-~~~~~k~I~p~~i~~AI~~d~eL~~L~~~~ 100 (124)
-++++.++|+.+. +|..+ -......+.|++|+.|+..++.|...|...
T Consensus 109 ~mi~ayL~e~~~a~~aG~~~~~~~~~e~~IPeeLq~alda~palk~~f~~L 159 (200)
T COG4430 109 RMIKAYLAEAIAAEKAGRWVALKKNEELIIPEELQDALDANPALKTAFEAL 159 (200)
T ss_pred HHHHHHHHHHHHHHhcCCccCCCcccccCCcHHHHHHHhcCHHHHHHHHhc
Confidence 3455555555433 33332 122344689999999999999999999754
No 88
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=40.26 E-value=24 Score=23.68 Aligned_cols=55 Identities=31% Similarity=0.411 Sum_probs=35.1
Q ss_pred hhhhHHHhcCCcc---cccCCChHHHHHHHHHHHHHHH-HHHHHHHHHhCCCceechhhHHHhh
Q psy17762 28 GRIHRLLRKGNYA---ERVGAGAPVYLAAVMEYLAAEV-LELAGNAARDNKKTRIIPRHLQLAI 87 (124)
Q Consensus 28 ~ri~R~lk~~~~~---~rvs~~A~v~LaavLEyl~~eI-lelA~~~a~~~~~k~I~p~~i~~AI 87 (124)
.++.|.|-..+.. -|-...-|.||.+||+|++.+= .-++.. .. ..|.|+.+..|-
T Consensus 22 e~l~rFLa~TG~~p~~LR~~a~dp~FL~~VLdFl~~de~~l~af~--~a---~~~~p~~v~~Ar 80 (88)
T PF12096_consen 22 ERLPRFLALTGLSPDDLRAAAGDPAFLAAVLDFLLMDEAWLLAFC--DA---AGIPPEAVAAAR 80 (88)
T ss_pred HHHHHHHHHhCCCHHHHHHHccChHHHHHHHHHHHcchHHHHHHH--HH---cCcChhHHHHHH
Confidence 3556667666543 5667788999999999998762 222222 22 246777776653
No 89
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=39.61 E-value=39 Score=30.83 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcC
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 99 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~ 99 (124)
+.++++.|...|...+...|+++|+-+++-.+.++..+|..
T Consensus 6 ~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~ 46 (758)
T PRK11034 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (758)
T ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHH
Confidence 45678889999999999999999999999988777776654
No 90
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=39.38 E-value=92 Score=20.21 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CceechhhHHHhhh---------CchHHhhhhcCceeccCccCC
Q psy17762 55 MEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIR---------NDEELNKLLSGVTIAQGGVLP 109 (124)
Q Consensus 55 LEyl~~eIlelA~~~a~~~~-~k~I~p~~i~~AI~---------~d~eL~~L~~~~~i~~gg~~p 109 (124)
||--+..|++.=-.++.++| .-.|+..++...+. .++|++.+++....-..|.+-
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Id 69 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVN 69 (88)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCc
Confidence 55566667777777887666 66899999998884 457788888766555555543
No 91
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=38.70 E-value=56 Score=26.95 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 54 VMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 54 vLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
.++|+..|+-++.-..-+..|+ +|+.+.|..||+.-.+...+++
T Consensus 136 ~~~Y~~~el~~l~~~LE~~~G~-~it~e~L~~aI~~~N~~R~~~~ 179 (380)
T TIGR02263 136 GGEFYTAELNELCEGLEHLSGK-KITDDAIRASIAVFNDNRKLIQ 179 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 3889999988888777777777 6999999999986665555543
No 92
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=38.53 E-value=76 Score=24.88 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=34.4
Q ss_pred hhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 30 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 30 i~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
|...+++. ...|+.+|..+|...+..=+..+.-..-+.+.-.+...||.++|+..+..+.+
T Consensus 155 i~~~~~~~--g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~ 215 (340)
T PRK05574 155 IQQRLKQQ--GLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSAR 215 (340)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhc
Confidence 34444543 36788899988887765422222222222222222223999999988776554
No 93
>PHA02943 hypothetical protein; Provisional
Probab=37.94 E-value=73 Score=23.78 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcC
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 99 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~ 99 (124)
+.+++..-+..-+.++.+-|+|.++-.-|..|.|-..+|..
T Consensus 76 v~~~~Relwrlv~s~~~kfi~p~~l~~li~kd~~a~~~~ak 116 (165)
T PHA02943 76 VFEIKRELWRLVCNSRLKFITPSRLLRLIAKDTEAHNIFAK 116 (165)
T ss_pred HHHHHHHHHHHHHhccccccChHHHHHHHHhCHHHHHHHHH
Confidence 67777777888888899999999999999999999999964
No 94
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=37.61 E-value=42 Score=25.66 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=35.0
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 62 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eI 62 (124)
-++|+..+-+-|++.++--.+|.+|--||+..+-|.....
T Consensus 113 ttlp~~~l~~~l~~~gip~~~S~dAG~ylCN~iyY~sL~~ 152 (208)
T PRK13194 113 ATLPTREIVEELKKNGIPAVLSYSAGTYLCNYVMYLTLHH 152 (208)
T ss_pred CCCCHHHHHHHHHhcCCCcEEeCCCccchhHHHHHHHHHH
Confidence 4699999999999988889999999999999999976543
No 95
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=37.20 E-value=95 Score=18.71 Aligned_cols=48 Identities=6% Similarity=0.039 Sum_probs=36.6
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~ 72 (124)
.+|=+-+..+|...| ...-.....-.++=+.+=|+++|+.-|..+++.
T Consensus 2 ~IPD~v~~~yL~~~G-~~~~D~rv~RLvSLaaQKFisdI~~dA~q~~k~ 49 (51)
T PF03540_consen 2 TIPDEVTDYYLERSG-FQTSDPRVKRLVSLAAQKFISDIANDAMQYCKI 49 (51)
T ss_pred CCCHHHHHHHHHHCC-CCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777888999988 444555556667778899999999999887753
No 96
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=37.16 E-value=84 Score=24.56 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=31.3
Q ss_pred CcccccccchhhhhHHHhc----CCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy17762 18 SSRAGLQFPVGRIHRLLRK----GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (124)
Q Consensus 18 s~ragl~fPv~ri~R~lk~----~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~ 73 (124)
+....+-|....+.+.|++ .+ ...+..+...+|+.++|.-+.+|++-+...|.|-
T Consensus 37 ~~~~~~fL~~~~L~~~i~~i~~~~g-~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR 95 (264)
T PF05236_consen 37 SEKEEPFLNPSPLQKRIQKIAKKHG-LKSVDEDVLELLSLATEERLRNLIEKAIVLSRHR 95 (264)
T ss_dssp -------S-HHHHHHHHHHHHHCTT---EE-TCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred ccccccccCHHHHHHHHHHHHHHcC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566666666655543 33 4679999999999999999999999999888764
No 97
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=35.70 E-value=77 Score=23.01 Aligned_cols=48 Identities=15% Similarity=0.349 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcCceeccCccCCCcccccc
Q psy17762 47 APVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLL 116 (124)
Q Consensus 47 A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~ 116 (124)
-.+++++++-++++++++.-.+.-.+ + ..++..+| +.|.||+.|.++.
T Consensus 4 N~~l~~a~~a~~~AQ~iK~~~~~~~~---r-------------~~d~~~~~------~sGGMPSSHSA~V 51 (141)
T PF02681_consen 4 NKVLIAALIAWFIAQFIKVFINYLKE---R-------------KWDWRRFF------SSGGMPSSHSATV 51 (141)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh---C-------------cccHHHHh------hcCCCCchHHHHH
Confidence 35789999999999999998886655 1 11223444 5688999887753
No 98
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=35.46 E-value=66 Score=27.83 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=35.6
Q ss_pred cCCChHHHHHHHHHHH------HHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 43 VGAGAPVYLAAVMEYL------AAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 43 vs~~A~v~LaavLEyl------~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
++..+..+|..+.+-+ ..-|+.+|...|.-.+...|+++||..|+.
T Consensus 446 l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 446 LSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 4555666665555554 345899999999999999999999999985
No 99
>KOG1051|consensus
Probab=35.20 E-value=29 Score=32.40 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=38.6
Q ss_pred HHHHHH---HHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcCceeccC
Q psy17762 55 MEYLAA---EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQG 105 (124)
Q Consensus 55 LEyl~~---eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~~~i~~g 105 (124)
-|.||+ .+|..|..+|...+.-.+||.|+-.++-.++ ..++..+.++.+
T Consensus 9 ~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~--t~~lr~ac~~~~ 60 (898)
T KOG1051|consen 9 QQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSP--TGILRRACIKSH 60 (898)
T ss_pred HhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCC--chHHHHHHHhcC
Confidence 344544 4899999999999999999999999998776 566666665555
No 100
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=34.88 E-value=1e+02 Score=19.67 Aligned_cols=53 Identities=9% Similarity=0.208 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHH-hCCCc-eechhhHHHhhhC-----------chHHhhhhcCceeccCccC
Q psy17762 55 MEYLAAEVLELAGNAAR-DNKKT-RIIPRHLQLAIRN-----------DEELNKLLSGVTIAQGGVL 108 (124)
Q Consensus 55 LEyl~~eIlelA~~~a~-~~~~k-~I~p~~i~~AI~~-----------d~eL~~L~~~~~i~~gg~~ 108 (124)
||+-+.++. .+...-. ..+.. .|+..++..++.. ++++..+|........|.+
T Consensus 4 ~e~~~~~l~-~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I 69 (92)
T cd05025 4 LETAMETLI-NVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEV 69 (92)
T ss_pred HHHHHHHHH-HHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcC
Confidence 666665544 4666553 55666 6999999999852 4667888875544444444
No 101
>PRK09862 putative ATP-dependent protease; Provisional
Probab=34.47 E-value=44 Score=29.06 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 61 EVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 61 eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.|+..|...|.-.++..|+++||..|+.
T Consensus 463 rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 463 RLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4888999999999999999999999997
No 102
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=33.69 E-value=1.2e+02 Score=19.73 Aligned_cols=54 Identities=7% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc-eechhhHHHhhhC-----------chHHhhhhcCceeccCccC
Q psy17762 55 MEYLAAEVLELAGNAARDNKKT-RIIPRHLQLAIRN-----------DEELNKLLSGVTIAQGGVL 108 (124)
Q Consensus 55 LEyl~~eIlelA~~~a~~~~~k-~I~p~~i~~AI~~-----------d~eL~~L~~~~~i~~gg~~ 108 (124)
||.-+.++.+.=-.++...+.. +|+..++...+.+ +.+++.++..+-....|.+
T Consensus 5 le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~I 70 (93)
T cd05026 5 LEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEV 70 (93)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCC
Confidence 5666666666555666555554 7999999999843 3478888887655555544
No 103
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=33.52 E-value=56 Score=24.11 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHHhCCCceechhhHHHhhh
Q psy17762 47 APVYLAAVMEYLAAEVL----ELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 47 A~v~LaavLEyl~~eIl----elA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+..=+.|+++|+-..-- +...+.+..=|- .|||++|+.+|.
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV-~VT~E~I~~~V~ 127 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACGVGV-VVTPEQIEAAVE 127 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT-----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCe-EECHHHHHHHHH
Confidence 46678899999988633 333443333333 799999999986
No 104
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=32.89 E-value=91 Score=21.76 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=21.8
Q ss_pred ccccccchhhhhHHHhcCCcccccCCChHH
Q psy17762 20 RAGLQFPVGRIHRLLRKGNYAERVGAGAPV 49 (124)
Q Consensus 20 ragl~fPv~ri~R~lk~~~~~~rvs~~A~v 49 (124)
+.+..+|+++|++.|++.+++-....+|-.
T Consensus 18 ~T~rP~p~~~IE~Am~e~~~~v~p~ksak~ 47 (125)
T PF09377_consen 18 RTNRPYPPTRIEKAMKEAHFSVDPNKSAKQ 47 (125)
T ss_dssp TTTBTT-HHHHHHHHHHTTS-SSTTS-HHH
T ss_pred CCCCCCCHHHHHHHHHhCCcccCCCCCHHH
Confidence 457899999999999998877666666664
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=31.98 E-value=62 Score=29.10 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 60 ~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
..++..|..+|...+...|+++||-+|+-.+++...++.
T Consensus 6 ~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~ 44 (731)
T TIGR02639 6 ERILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILE 44 (731)
T ss_pred HHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHH
Confidence 456788889999999999999999999987766545444
No 106
>PRK05629 hypothetical protein; Validated
Probab=29.98 E-value=1.1e+02 Score=24.26 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=37.9
Q ss_pred hhhhHHHhcC--CcccccCCChHHHHHHHHHH----HHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHH
Q psy17762 28 GRIHRLLRKG--NYAERVGAGAPVYLAAVMEY----LAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 93 (124)
Q Consensus 28 ~ri~R~lk~~--~~~~rvs~~A~v~LaavLEy----l~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL 93 (124)
..+.+|+++. .....|+.+|..||...++. +-.||=.++. ..+ ..||.+||+..+....|.
T Consensus 129 ~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~----~~~-~~It~e~V~~~v~~~~~~ 195 (318)
T PRK05629 129 RERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVE----DTQ-GNVTVEKVRAYYVGVAEV 195 (318)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHh----cCC-CCcCHHHHHHHhCCCccc
Confidence 3444454432 13478999999888876543 4444444432 223 469999999988766653
No 107
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=29.69 E-value=53 Score=24.77 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=30.5
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLEL 65 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlel 65 (124)
-++|+..+-+-|++.++--.+|.+|--||+-.+=|......+.
T Consensus 113 t~lp~~~l~~~l~~~gip~~~S~dAG~YlCN~~~Y~sl~~~~~ 155 (202)
T PF01470_consen 113 TTLPVRALVEALREAGIPVEISNDAGRYLCNYIYYRSLHHAER 155 (202)
T ss_dssp -BS-HHHHHHHHHHTT--EEEES---SSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCCcccCChhhhHHHHHHHHHHHHHhh
Confidence 4599999999999988889999999999999888887765544
No 108
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=27.55 E-value=1.4e+02 Score=23.56 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=36.3
Q ss_pred hhHHHhcC--CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHh--CCCceechhhHHHhhhCc
Q psy17762 30 IHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD--NKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 30 i~R~lk~~--~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~--~~~k~I~p~~i~~AI~~d 90 (124)
+.+|+++. .....++.+|..+|+..+..=+..+.-.--+.+-. .+..+|+++||+..+...
T Consensus 135 l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~ 199 (326)
T PRK07452 135 LKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT 199 (326)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC
Confidence 44455442 13467889998888887665333322222233333 345679999999987654
No 109
>KOG3423|consensus
Probab=27.41 E-value=2.7e+02 Score=20.99 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=48.4
Q ss_pred ccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CceechhhHHHhh
Q psy17762 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK--------------KTRIIPRHLQLAI 87 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~--------------~k~I~p~~i~~AI 87 (124)
-+++|=+-+..+|..++ +....--..-.++-.-+-|+.+|..-|..+++-.. +.++|-+||.-|+
T Consensus 84 tP~IPDavt~~yL~~aG-f~~~D~rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK~tLtmeDL~~AL 162 (176)
T KOG3423|consen 84 TPTIPDAVTDHYLKKAG-FQTSDPRVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKKYTLTMEDLSPAL 162 (176)
T ss_pred CCCCcHHHHHHHHHhcC-CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceeeeHHHHHHHH
Confidence 35677788888998887 55555555556666778999999999988875443 3468888888776
Q ss_pred h
Q psy17762 88 R 88 (124)
Q Consensus 88 ~ 88 (124)
.
T Consensus 163 ~ 163 (176)
T KOG3423|consen 163 A 163 (176)
T ss_pred H
Confidence 4
No 110
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=27.34 E-value=1.1e+02 Score=24.24 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=37.8
Q ss_pred hhHHHhcCCcccccCCChHHHHHHHHHH----HHHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 30 IHRLLRKGNYAERVGAGAPVYLAAVMEY----LAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 30 i~R~lk~~~~~~rvs~~A~v~LaavLEy----l~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
|...+++. ...|+.+|..+|+..++. +..||-+++.- + .+...||.+||+..+....|
T Consensus 151 i~~~~~~~--g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly-~--~~~~~It~edV~~lv~~~~e 212 (343)
T PRK06585 151 IDDELAEA--GLRITPDARALLVALLGGDRLASRNEIEKLALY-A--HGKGEITLDDVRAVVGDASA 212 (343)
T ss_pred HHHHHHHC--CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHh-c--CCCCCCCHHHHHHHhCCccc
Confidence 44444443 478999999999988775 33344444432 2 23457999999998876655
No 111
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=27.15 E-value=44 Score=20.37 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=20.8
Q ss_pred eechhhHHHhhhCchHHhhhhcCc
Q psy17762 77 RIIPRHLQLAIRNDEELNKLLSGV 100 (124)
Q Consensus 77 ~I~p~~i~~AI~~d~eL~~L~~~~ 100 (124)
...|.||..++..|++.+..|...
T Consensus 4 ~~vP~dl~~aL~~~p~a~~~f~~l 27 (63)
T PF13376_consen 4 VEVPEDLEAALEANPEAKEFFESL 27 (63)
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHC
Confidence 467999999999999999998653
No 112
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=27.12 E-value=32 Score=26.13 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcCceeccCccCCCcccccc
Q psy17762 53 AVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLL 116 (124)
Q Consensus 53 avLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~ 116 (124)
.--|.++..|++.+.+..--.....++++++..+-.--..++.+- -..|+.+.|.+.++...+
T Consensus 54 keA~ki~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~~~a-mt~iSF~eV~fTfD~~~L 116 (186)
T PF05527_consen 54 KEAEKIIKNIIKIVVKIGVLYRNNQFSDEELALAEKFRKKFHQLA-MTAISFYEVDFTFDRNYL 116 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH-HHHHHHTSTTS---HHHH
T ss_pred HHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHHHHH-HHHhhhcccchhhhHHHH
Confidence 445778888888888887776677899999998876555555444 456888888888776443
No 113
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.94 E-value=1.2e+02 Score=25.04 Aligned_cols=45 Identities=22% Similarity=0.073 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhh
Q psy17762 52 AAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97 (124)
Q Consensus 52 aavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~ 97 (124)
...++|+..|+-++.-..-+..|+ +|+.+.|+.||..-.+...++
T Consensus 130 ~~~~~y~~~el~~l~~~LE~~~G~-~i~~e~L~~ai~~~n~~r~~~ 174 (377)
T TIGR03190 130 PHARKAHYAEVQRFRVFLQTLTGK-EITDDMLRDALAVCDENRRLL 174 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 456788888888887776666666 799999999998765554444
No 114
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=26.85 E-value=1.8e+02 Score=18.67 Aligned_cols=54 Identities=9% Similarity=0.187 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHh-CC-CceechhhHHHhhh-----------CchHHhhhhcCceeccCccCC
Q psy17762 55 MEYLAAEVLELAGNAARD-NK-KTRIIPRHLQLAIR-----------NDEELNKLLSGVTIAQGGVLP 109 (124)
Q Consensus 55 LEyl~~eIlelA~~~a~~-~~-~k~I~p~~i~~AI~-----------~d~eL~~L~~~~~i~~gg~~p 109 (124)
||+...++.+ +...-.. ++ ...|+..++..++. .++++..++........|.+.
T Consensus 3 ~~~~~~~l~~-~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~ 69 (94)
T cd05031 3 LEHAMESLIL-TFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVN 69 (94)
T ss_pred HHHHHHHHHH-HHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCc
Confidence 4555555444 4443433 44 46899999998764 346788888765555555443
No 115
>COG4905 Predicted membrane protein [Function unknown]
Probab=26.83 E-value=70 Score=24.88 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy17762 47 APVYLAAVMEYLAAEVLELAGN 68 (124)
Q Consensus 47 A~v~LaavLEyl~~eIlelA~~ 68 (124)
-+++++.++||++.-|||.-.|
T Consensus 70 fsi~ivTv~Eyvt~~ILEa~Fn 91 (243)
T COG4905 70 FSIFIVTVLEYVTGFILEAIFN 91 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3578999999999999998754
No 116
>PRK05907 hypothetical protein; Provisional
Probab=26.47 E-value=1.2e+02 Score=24.47 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=39.9
Q ss_pred hhhhHHHhcC--CcccccCCChHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHH
Q psy17762 28 GRIHRLLRKG--NYAERVGAGAPVYLAAVM-----EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 93 (124)
Q Consensus 28 ~ri~R~lk~~--~~~~rvs~~A~v~LaavL-----Eyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL 93 (124)
..+.+|+.+. .....++.+|..+|.... ..+..||=+++.- + ..+.+|+.+||+..+....|.
T Consensus 137 ~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly-~--g~~~~It~e~V~~lv~~s~e~ 206 (311)
T PRK05907 137 KRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQ-M--GKKESLEASDIQSFVVKKEAA 206 (311)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHh-c--CCCCeECHHHHHHHhcCcccc
Confidence 4455666542 134788888887777644 2344444444432 1 346689999999999877763
No 117
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=25.09 E-value=85 Score=27.80 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=33.3
Q ss_pred ccCCChHHHHHHHHHHHHH-------HHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 42 RVGAGAPVYLAAVMEYLAA-------EVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 42 rvs~~A~v~LaavLEyl~~-------eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.|+..+..||+....-+-. -++..|...|.-.++..|+++||+.|+.
T Consensus 249 ~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~ 302 (633)
T TIGR02442 249 RISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAE 302 (633)
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 4555566666655544322 2567777788889999999999998874
No 118
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.95 E-value=1.2e+02 Score=25.63 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 52 AAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 52 aavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
...++|+..|+-++.-..-+..|+ +|+.+.|+.||+|...
T Consensus 154 ~~~~~Y~~~ql~~l~~~LEe~tG~-kit~e~L~eaI~n~nr 193 (430)
T TIGR03191 154 DARLDYVANQLHDGIEFVEKASGR-KCDDELFIKAIKNEMR 193 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 456788888887777665555566 6999999999996543
No 119
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=24.15 E-value=61 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=36.7
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLE 64 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIle 64 (124)
-++|+.++-+.|++.++--.+|.+|--|++..+-|.....++
T Consensus 117 stLpv~~iv~~l~~~gipa~vS~~AGtYvCN~v~Y~sL~~~~ 158 (222)
T PRK13195 117 ATVPVRAMVLAMRKAGVPADVSDAAGTFVCNHLMYGVLHHLA 158 (222)
T ss_pred cCCCHHHHHHHHHhcCCCceEecCCCcceehHHHHHHHHHHh
Confidence 569999999999999888899999999999999997766554
No 120
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=24.02 E-value=1.6e+02 Score=23.52 Aligned_cols=56 Identities=16% Similarity=0.039 Sum_probs=36.7
Q ss_pred hhhHHHhcCCcccccCCChHHHHHHHHH----HHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 29 RIHRLLRKGNYAERVGAGAPVYLAAVME----YLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 29 ri~R~lk~~~~~~rvs~~A~v~LaavLE----yl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
+|...+++. ...|+.+|..+|+..++ .+..||=+++.- .+ .||++||+..+....|
T Consensus 143 ~i~~~~~~~--g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly----~~--~It~edV~~~v~~~~e 202 (328)
T PRK08487 143 LLQERAKEL--GLDIDQNALNHLYFIHNEDLALAANELEKLAIL----NE--PITLKDIQELVFGLGS 202 (328)
T ss_pred HHHHHHHHh--CCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHh----cC--CCCHHHHHHHhccccc
Confidence 344444443 47899999999988755 344445444432 22 6999999999865555
No 121
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.95 E-value=1e+02 Score=23.54 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=35.7
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVL 63 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIl 63 (124)
-++|+..+-.-|++.++--.+|.+|--|++..+-|......
T Consensus 113 t~lp~~~l~~~l~~~Gip~~~S~~AG~yvCN~vyY~sl~~~ 153 (209)
T PRK13193 113 TNIPVEDLVDLLNENGIPAELSLSAGSYLCNNAMYIIIREA 153 (209)
T ss_pred cCCCHHHHHHHHHhcCCCceEecCCccchhHHHHHHHHHHH
Confidence 56999999999999998899999999999999999776543
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.82 E-value=98 Score=27.82 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
+.++++.|..+|...+...|.++||-+|+-.|.+
T Consensus 82 lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~ 115 (731)
T TIGR02639 82 VQRVLQRALLHVKSAGKKEIGIGDILVALFDEED 115 (731)
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcc
Confidence 4568888888998889889999999999876643
No 123
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=23.80 E-value=64 Score=24.68 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=35.3
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLE 64 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIle 64 (124)
-+||+..+-..|++.++--.+|.+|--||+..+-|.....++
T Consensus 111 ttLpv~~l~~~l~~~gip~~~S~dAG~ylCN~i~Y~sL~~~~ 152 (212)
T TIGR00504 111 ATLPVRAMVLAMKKAGIPADVSYTAGTFVCNHLMYGLLHHLA 152 (212)
T ss_pred cCCCHHHHHHHHHHcCCCeeEeCCCCceeeHHHHHHHHHHHH
Confidence 468998888888888877899999999999999997765543
No 124
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=23.79 E-value=1.2e+02 Score=23.48 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=38.4
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELA 66 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA 66 (124)
-++||-.+-..|++.+.---||.+|-.|++.-+-|.+...+..=
T Consensus 113 stlPvkamv~~~~~~GiPA~vS~sAGTyvCNhvmY~~l~~~~~~ 156 (207)
T COG2039 113 STLPVKAMVQAIREAGIPASVSNSAGTYVCNHVMYGLLHHLAKK 156 (207)
T ss_pred hcCcHHHHHHHHHHcCCChhhhcccchhhhHHHHHHHHHHHHHh
Confidence 46999999999999998899999999999999999887766543
No 125
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [].
Probab=23.43 E-value=65 Score=23.65 Aligned_cols=83 Identities=23% Similarity=0.337 Sum_probs=45.0
Q ss_pred cccccchhhhhHHHhcCCcccccCCChHHHHH-HHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcC
Q psy17762 21 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLA-AVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 99 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~~~~rvs~~A~v~La-avLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~ 99 (124)
.++..|+..+-++++.- ...+++...+.++. ..-|.|..-..-+.-.. .....|.-|..|..-
T Consensus 23 ~~l~~~iEdlN~lv~~~-i~~~~~~~~~~~~~~dl~elL~tg~~~L~~~l---------------~~~~~~~~l~rL~ei 86 (158)
T PF08539_consen 23 ERLRLPIEDLNELVRFH-IKLCIQSFPPSYFLEDLEELLTTGMYILENQL---------------NEVPDNRLLKRLVEI 86 (158)
T ss_pred CCCCcCHHHHHHHHHHH-HHHhhcccchHHHHHHHHHHHHHHHHHHHHHH---------------hhcchhHHHHHHHHH
Confidence 35667887777777552 23455555444322 22333333222222211 122344455556666
Q ss_pred ceeccCccCCCccccccCcc
Q psy17762 100 VTIAQGGVLPNIQAVLLPKK 119 (124)
Q Consensus 100 ~~i~~gg~~p~~~~~~~~~k 119 (124)
|.+..+.|.|+++.+++|=.
T Consensus 87 W~~Ff~~VlP~lqavFlPLq 106 (158)
T PF08539_consen 87 WQFFFTQVLPYLQAVFLPLQ 106 (158)
T ss_pred HHHHhcchHHHHHHHHhhhH
Confidence 66668999999998888754
No 126
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=23.29 E-value=1.3e+02 Score=22.64 Aligned_cols=46 Identities=15% Similarity=-0.025 Sum_probs=29.7
Q ss_pred cCCChHHHHHHHHH---HHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 43 VGAGAPVYLAAVME---YLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 43 vs~~A~v~LaavLE---yl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
++..+...|..... +.+..+...+...|...+...|++++|+.++.
T Consensus 216 ~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 216 FSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred cCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45555544444433 13444566666666667778999999999986
No 127
>KOG3902|consensus
Probab=23.22 E-value=2.9e+02 Score=22.93 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=41.8
Q ss_pred HHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCch
Q psy17762 32 RLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 32 R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~ 91 (124)
.+|=..+...+-.-.+.+....++-==+.|++-.|...+...+..-|||+|+-.-|..|.
T Consensus 32 qmmf~sGei~~P~pett~Lved~V~gqvie~l~qa~eia~lrgsr~Itpedliflir~Dr 91 (352)
T KOG3902|consen 32 QMMFQSGEIPDPLPETTNLVEDNVRGQVIESLVQANEIADLRGSRSITPEDLIFLIRHDR 91 (352)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCccccChHHHHHHhhccH
Confidence 344333445554445555544444445567788888889889999999999999999884
No 128
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=22.94 E-value=1.2e+02 Score=26.85 Aligned_cols=48 Identities=27% Similarity=0.131 Sum_probs=34.9
Q ss_pred cccCCChHHHHHHHHHHHHH-------HHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 41 ERVGAGAPVYLAAVMEYLAA-------EVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 41 ~rvs~~A~v~LaavLEyl~~-------eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
-.|+....-|++.+...+.. -++..|...|..+++..|+++||..|+.
T Consensus 194 v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 194 VGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34555555565555555442 3677888899999999999999999984
No 129
>CHL00095 clpC Clp protease ATP binding subunit
Probab=22.75 E-value=97 Score=28.28 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 60 ~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
.+++..|..+|...+...|+++||-+++-.+++
T Consensus 10 ~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~ 42 (821)
T CHL00095 10 IKVIMLSQEEARRLGHNFVGTEQILLGLIGEGT 42 (821)
T ss_pred HHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCC
Confidence 346778889999999999999999999876643
No 130
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=22.67 E-value=70 Score=24.45 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=35.4
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLE 64 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIle 64 (124)
-+||+.++-..+++.++--.+|.+|--||+..+-|.....+.
T Consensus 116 stLpv~~l~~~l~~~gip~~iS~~AG~YlCN~v~Y~sL~~~~ 157 (211)
T PRK13196 116 STLPLRAILAAWHDAGIPGHISNTAGLYVCNFVLYHALHQLH 157 (211)
T ss_pred cCCCHHHHHHHHHhcCCCceEccCCCceeehHHHHHHHHHHH
Confidence 468999999999998888899999999999988886655443
No 131
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=22.33 E-value=1.7e+02 Score=23.51 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=44.8
Q ss_pred hhhhHHHhcC--CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHh
Q psy17762 28 GRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELN 94 (124)
Q Consensus 28 ~ri~R~lk~~--~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~ 94 (124)
..+.+|++.. ...-+|+.+|..||+..++.=+.+|.-.-.+.+-....+.|+-+||+..|....+.+
T Consensus 143 ~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~ 211 (334)
T COG1466 143 AELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFN 211 (334)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCC
Confidence 3455555442 135899999999999998855444444334444444444999999999998776643
No 132
>PRK07914 hypothetical protein; Reviewed
Probab=21.90 E-value=1.5e+02 Score=23.50 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=38.5
Q ss_pred chhhhhHHHhcC--CcccccCCChHHHHHHHHH----HHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHH
Q psy17762 26 PVGRIHRLLRKG--NYAERVGAGAPVYLAAVME----YLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 93 (124)
Q Consensus 26 Pv~ri~R~lk~~--~~~~rvs~~A~v~LaavLE----yl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL 93 (124)
+-..+.+|+++. .....|+.+|..+|...++ .+..|+-.+ +-..+ ..||.++|+..+....|.
T Consensus 129 ~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL----~~~~~-~~It~e~V~~~v~~~~~~ 197 (320)
T PRK07914 129 KAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQL----VADTG-GAVDAAAVRRYHSGKAEV 197 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHH----hcCCC-CCcCHHHHHHHcCCCeec
Confidence 344545555542 1346788888888887664 333333333 22223 469999999998876663
No 133
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=21.89 E-value=1.2e+02 Score=25.88 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 61 EVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 61 eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
.|+..|+..|...++..|+.+|+..|+..
T Consensus 395 ~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 395 AICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 34555666677778889999999999865
No 134
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=21.84 E-value=1.1e+02 Score=28.19 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCch
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~ 91 (124)
+..+++.|..+|...+...|+++||-+|+-.++
T Consensus 5 a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~ 37 (852)
T TIGR03346 5 FQEALQAAQSLALGRDHQQIEPEHLLKALLDQE 37 (852)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 346778888999999999999999999987665
No 135
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=21.52 E-value=1.2e+02 Score=24.90 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=30.6
Q ss_pred cCCChHHHHHHHHHHHHHH-------HHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 43 VGAGAPVYLAAVMEYLAAE-------VLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 43 vs~~A~v~LaavLEyl~~e-------IlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
|++....|++.+...+-.+ ++..|-..|--+|+..++|+||+.++.
T Consensus 255 v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~ 307 (337)
T TIGR02030 255 IPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAV 307 (337)
T ss_pred CCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4455555666555544321 445566677788999999999998763
No 136
>PF09077 Phage-MuB_C: Mu B transposition protein, C terminal ; InterPro: IPR009084 Bacteriophage Mu can integrate into the host bacterial genome and replicate via transposition. Mu requires the activity of four proteins for DNA transposition. Two of these proteins are the phage-encoded A and B transposition proteins, while the other two are host-specified accessory factors HU and IHF. These four proteins can form nucleoprotein complexes (transposomes), which enable strand transfer. The stable protein-DNA intermediate is subsequently disassembled prior to DNA replication by host proteins. The Mu B transposition protein is an ATP-dependent, DNA-binding protein required for target capture and immunity, as well as for activating transpososome function []. The C-terminal domain of the B transposition protein is believed to be involved in both DNA-binding and protein-protein contacts with the Mu A transposition protein. The structure of the C-terminal domain consists of four helices in an irregular array [].; GO: 0003677 DNA binding, 0006313 transposition, DNA-mediated; PDB: 1F6V_A.
Probab=21.39 E-value=44 Score=21.90 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+...|.+|...|..++.. |+..||..|-.
T Consensus 48 l~ktLrlA~m~A~g~g~~-i~~~~i~~A~~ 76 (78)
T PF09077_consen 48 LTKTLRLAAMFAKGEGEA-ITADHIRAAWK 76 (78)
T ss_dssp HHHHHGGGT-TT-TTS---SSHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 455678888888887775 99999998864
No 137
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=20.69 E-value=1.4e+02 Score=24.20 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 61 EVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 61 eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.+...|+..|...++..|+.+|+..|+.
T Consensus 334 ~l~~~A~~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 334 AICTEAGMFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 3445555666666778899999999985
No 138
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.24 E-value=2.4e+02 Score=20.87 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcCceeccCccCCCcccccc
Q psy17762 48 PVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLL 116 (124)
Q Consensus 48 ~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~ 116 (124)
-++++|+.-++.+++++.....-.+.+.. .+ .+-+-|.||+.|.++.
T Consensus 11 ~~llsal~a~~~AQvIKv~I~~~~~rk~~-~~---------------------~~~sTGGMPSsHSA~V 57 (153)
T COG1963 11 TPLLSALVAILLAQVIKVLIELIRTRKLN-VT---------------------LLFSTGGMPSSHSALV 57 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccc-ce---------------------eeeecCCCCchHHHHH
Confidence 36889999999999988887655443221 11 3346677899887754
Done!