Query psy17762
Match_columns 124
No_of_seqs 108 out of 606
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:13:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nqb_C Histone H2A; nucleosome 100.0 3.1E-50 1.1E-54 284.6 9.4 123 2-124 1-123 (123)
2 1tzy_A Histone H2A-IV; histone 100.0 7.1E-50 2.4E-54 284.8 9.4 123 1-123 1-124 (129)
3 2f8n_G Core histone macro-H2A. 100.0 2.6E-49 9.1E-54 278.8 9.0 119 1-121 1-119 (120)
4 2f8n_K Histone H2A type 1; nuc 100.0 7E-49 2.4E-53 285.1 9.4 123 1-123 20-143 (149)
5 1id3_C Histone H2A.1; nucleoso 100.0 7.3E-48 2.5E-52 275.0 12.4 119 5-123 6-124 (131)
6 1f66_C Histone H2A.Z; nucleoso 100.0 2.2E-47 7.6E-52 271.6 9.0 122 1-123 1-126 (128)
7 2jss_A Chimera of histone H2B. 100.0 1.3E-36 4.4E-41 228.8 8.7 98 13-111 94-192 (192)
8 1jfi_A Transcription regulator 99.9 1.1E-24 3.8E-29 148.2 7.0 81 17-97 4-84 (98)
9 3ksy_A SOS-1, SON of sevenless 99.9 3.9E-25 1.3E-29 198.1 6.2 102 13-116 93-194 (1049)
10 1n1j_B NF-YC; histone-like PAI 99.8 9.2E-21 3.2E-25 128.5 8.4 80 18-97 13-92 (97)
11 1tzy_D Histone H4-VI; histone- 99.8 8.9E-21 3E-25 129.9 8.2 88 1-91 1-95 (103)
12 2yfw_B Histone H4, H4; cell cy 99.8 7.8E-21 2.7E-25 130.2 7.5 88 1-91 1-95 (103)
13 4g92_C HAPE; transcription fac 99.8 6.1E-20 2.1E-24 128.7 8.3 76 22-97 39-114 (119)
14 2byk_A Chrac-16; nucleosome sl 99.8 5.7E-19 2E-23 126.9 6.0 85 13-97 8-93 (140)
15 1f1e_A Histone fold protein; a 99.6 2.7E-15 9.1E-20 109.2 6.5 71 19-90 77-147 (154)
16 1id3_B Histone H4; nucleosome 99.5 5.2E-14 1.8E-18 96.1 8.2 81 7-90 13-93 (102)
17 1ku5_A HPHA, archaeal histon; 99.4 2.5E-13 8.6E-18 86.5 6.7 66 23-89 5-70 (70)
18 1b67_A Protein (histone HMFA); 99.4 6.7E-13 2.3E-17 83.9 6.7 64 24-88 2-65 (68)
19 2hue_C Histone H4; mini beta s 99.3 2.1E-11 7.1E-16 80.3 8.5 73 15-90 3-75 (84)
20 1n1j_A NF-YB; histone-like PAI 99.2 3E-11 1E-15 80.7 6.7 68 21-88 5-73 (93)
21 3b0c_W CENP-W, centromere prot 99.1 3.5E-10 1.2E-14 73.0 6.8 66 23-88 3-68 (76)
22 1f1e_A Histone fold protein; a 99.1 3E-10 1E-14 82.6 6.7 63 24-87 4-67 (154)
23 2byk_B Chrac-14; nucleosome sl 99.0 2.1E-10 7.2E-15 81.0 5.5 75 22-96 7-82 (128)
24 1taf_B TFIID TBP associated fa 99.0 5.9E-10 2E-14 71.2 6.6 65 23-88 5-69 (70)
25 3b0c_T CENP-T, centromere prot 98.9 6.1E-10 2.1E-14 76.9 4.4 71 22-93 5-75 (111)
26 1taf_A TFIID TBP associated fa 98.8 9.8E-09 3.3E-13 65.2 6.8 60 29-89 6-65 (68)
27 1jfi_B DR1 protein, transcript 98.7 2.3E-08 7.8E-13 74.2 6.6 79 18-97 9-87 (179)
28 2hue_B Histone H3; mini beta s 98.5 2.3E-07 7.8E-12 60.2 6.2 65 23-88 2-71 (77)
29 3v9r_A MHF1, uncharacterized p 98.5 3.1E-07 1.1E-11 61.2 6.1 77 21-99 12-89 (90)
30 4dra_A Centromere protein S; D 98.5 1.9E-07 6.4E-12 64.6 5.2 74 21-98 27-103 (113)
31 2l5a_A Histone H3-like centrom 98.4 1.8E-07 6.1E-12 71.8 5.0 59 30-89 167-225 (235)
32 2ly8_A Budding yeast chaperone 98.4 7.8E-07 2.7E-11 62.2 6.7 54 35-89 58-111 (121)
33 3nqj_A Histone H3-like centrom 98.4 5.2E-07 1.8E-11 59.1 5.4 66 23-88 2-73 (82)
34 3b0b_B CENP-S, centromere prot 98.3 6.8E-07 2.3E-11 61.2 5.5 74 22-98 20-95 (107)
35 3nqu_A Histone H3-like centrom 98.2 2E-06 6.9E-11 61.4 5.7 69 21-89 58-132 (140)
36 2yfv_A Histone H3-like centrom 98.2 1.8E-06 6E-11 58.5 5.1 68 21-88 24-98 (100)
37 1tzy_C Histone H3; histone-fol 98.2 3E-06 1E-10 60.3 6.4 66 22-88 60-130 (136)
38 3r45_A Histone H3-like centrom 98.2 1.7E-06 5.9E-11 62.7 5.0 70 21-90 74-149 (156)
39 3vh5_A CENP-S; histone fold, c 98.1 2E-06 6.7E-11 61.4 4.4 78 21-99 19-96 (140)
40 2nqb_D Histone H2B; nucleosome 98.1 6E-06 2.1E-10 57.7 5.8 64 24-88 34-97 (123)
41 1tzy_B Histone H2B; histone-fo 98.0 8.8E-06 3E-10 57.1 5.8 65 23-88 36-100 (126)
42 2jss_A Chimera of histone H2B. 97.6 0.00011 3.8E-09 54.6 5.6 61 28-88 7-67 (192)
43 1bh9_B TAFII28; histone fold, 96.9 0.0021 7.1E-08 42.4 5.5 64 24-88 16-80 (89)
44 3b0b_C CENP-X, centromere prot 96.7 0.0067 2.3E-07 39.3 6.6 65 22-86 6-72 (81)
45 4dra_E Centromere protein X; D 96.6 0.0078 2.7E-07 39.3 6.7 67 20-86 8-76 (84)
46 1h3o_B Transcription initiatio 95.9 0.022 7.4E-07 36.5 5.6 67 24-90 5-71 (76)
47 2l5a_A Histone H3-like centrom 94.3 0.046 1.6E-06 41.8 4.3 67 22-88 9-82 (235)
48 1wwi_A Hypothetical protein TT 90.6 0.54 1.9E-05 33.5 5.5 61 24-85 2-62 (148)
49 1k6k_A ATP-dependent CLP prote 87.4 0.68 2.3E-05 31.1 4.1 40 59-98 6-45 (143)
50 1khy_A CLPB protein; alpha hel 83.2 1.3 4.6E-05 29.7 4.0 33 59-91 10-42 (148)
51 1r4v_A Hypothetical protein AQ 82.9 0.8 2.8E-05 33.3 2.8 61 24-85 26-86 (171)
52 3fes_A ATP-dependent CLP endop 82.4 1 3.4E-05 30.7 3.1 39 59-97 12-52 (145)
53 2y1q_A CLPC N-domain, negative 80.9 1.3 4.6E-05 29.9 3.3 34 59-92 10-43 (150)
54 3fh2_A Probable ATP-dependent 80.2 1.2 4.1E-05 30.3 2.8 40 59-98 11-52 (146)
55 3fes_A ATP-dependent CLP endop 77.7 1.7 5.9E-05 29.5 3.0 40 59-98 86-127 (145)
56 3zri_A CLPB protein, CLPV; cha 77.5 2.3 8E-05 30.2 3.8 41 51-91 18-61 (171)
57 3fh2_A Probable ATP-dependent 75.5 2 6.8E-05 29.2 2.8 40 59-98 86-127 (146)
58 3v9r_B MHF2, uncharacterized p 75.5 14 0.00047 24.0 6.6 48 25-72 2-51 (88)
59 1k6k_A ATP-dependent CLP prote 74.7 3.4 0.00012 27.5 3.8 34 59-92 84-117 (143)
60 3zri_A CLPB protein, CLPV; cha 70.5 4.2 0.00014 28.9 3.6 32 60-91 104-136 (171)
61 1khy_A CLPB protein; alpha hel 69.4 5.9 0.0002 26.4 4.1 40 59-98 87-127 (148)
62 2y1q_A CLPC N-domain, negative 67.5 3.9 0.00013 27.4 2.8 33 59-91 84-116 (150)
63 2v1u_A Cell division control p 61.4 28 0.00096 25.9 6.9 66 23-88 196-274 (387)
64 1r6b_X CLPA protein; AAA+, N-t 59.2 10 0.00036 32.1 4.5 40 59-98 6-45 (758)
65 2vxz_A Pyrsv_GP04; viral prote 58.4 20 0.0007 25.6 5.2 43 58-100 75-117 (165)
66 3kw6_A 26S protease regulatory 53.6 20 0.0007 21.4 4.1 23 66-88 49-71 (78)
67 3uk6_A RUVB-like 2; hexameric 50.3 43 0.0015 25.1 6.3 49 41-89 277-329 (368)
68 3fwb_A Cell division control p 48.6 49 0.0017 21.0 6.9 49 60-108 95-149 (161)
69 1g8p_A Magnesium-chelatase 38 47.7 32 0.0011 25.5 5.2 47 42-88 267-320 (350)
70 2dzn_B 26S protease regulatory 45.8 33 0.0011 20.7 4.2 45 41-89 23-67 (82)
71 3pxg_A Negative regulator of g 44.8 16 0.00054 29.4 3.2 32 59-90 10-41 (468)
72 3pxg_A Negative regulator of g 44.5 14 0.00049 29.7 2.9 34 59-92 84-117 (468)
73 2qby_A CDC6 homolog 1, cell di 44.4 44 0.0015 24.8 5.5 62 28-89 200-271 (386)
74 3k1j_A LON protease, ATP-depen 41.5 50 0.0017 27.4 5.9 30 60-89 345-374 (604)
75 3f9v_A Minichromosome maintena 39.8 17 0.00058 30.4 2.7 64 25-88 502-585 (595)
76 4gqb_C Histone H4 peptide; TIM 39.4 14 0.00048 18.2 1.3 12 2-13 2-13 (26)
77 3pxi_A Negative regulator of g 38.9 21 0.00072 30.4 3.2 32 59-90 10-41 (758)
78 3f4m_A Tumor necrosis factor, 35.4 15 0.0005 26.3 1.4 62 53-115 31-92 (161)
79 3pxi_A Negative regulator of g 34.9 24 0.00081 30.1 2.9 34 59-92 84-117 (758)
80 1qvr_A CLPB protein; coiled co 34.7 33 0.0011 29.7 3.8 33 59-91 10-42 (854)
81 1r6b_X CLPA protein; AAA+, N-t 33.8 32 0.0011 29.1 3.5 34 59-92 84-117 (758)
82 3f8t_A Predicted ATPase involv 33.5 73 0.0025 26.7 5.5 83 24-108 393-499 (506)
83 1lv7_A FTSH; alpha/beta domain 33.1 46 0.0016 23.7 3.9 27 62-88 224-250 (257)
84 2krk_A 26S protease regulatory 32.8 65 0.0022 19.8 4.1 36 49-88 44-79 (86)
85 3n22_A Protein S100-A2; EF-han 32.6 45 0.0015 20.9 3.4 54 55-108 6-71 (98)
86 1f6v_A DNA transposition prote 32.4 8 0.00027 25.2 -0.4 29 59-88 49-77 (91)
87 3vlf_B 26S protease regulatory 29.9 56 0.0019 20.0 3.4 17 72-88 53-69 (88)
88 3aji_B S6C, proteasome (prosom 29.6 45 0.0015 20.0 2.9 19 70-88 51-69 (83)
89 1iy2_A ATP-dependent metallopr 29.4 54 0.0018 23.8 3.8 26 62-87 252-277 (278)
90 3bos_A Putative DNA replicatio 29.1 88 0.003 21.3 4.7 47 42-89 193-242 (242)
91 1ixz_A ATP-dependent metallopr 29.1 56 0.0019 23.2 3.8 26 62-87 228-253 (254)
92 2ly8_A Budding yeast chaperone 28.9 87 0.003 21.2 4.4 42 40-81 24-68 (121)
93 3h4m_A Proteasome-activating n 28.6 60 0.0021 23.3 3.9 30 60-89 228-257 (285)
94 1top_A Troponin C; contractIle 27.7 1.2E+02 0.004 19.1 5.6 50 59-108 94-149 (162)
95 3nso_A Protein S100-A3; EF-han 27.1 51 0.0018 20.9 2.9 53 55-107 5-69 (101)
96 2r2i_A Guanylyl cyclase-activa 26.2 98 0.0034 20.7 4.5 39 60-98 130-168 (198)
97 1jba_A GCAP-2, protein (guanyl 26.1 1.3E+02 0.0043 20.2 5.0 40 59-98 146-185 (204)
98 1bjf_A Neurocalcin delta; calc 26.0 54 0.0019 21.7 3.1 44 62-106 148-191 (193)
99 4gxh_A Pyrrolidone-carboxylate 25.7 39 0.0013 24.8 2.4 43 23-65 115-157 (216)
100 2qby_B CDC6 homolog 3, cell di 24.5 1.8E+02 0.0063 21.5 6.1 60 28-89 200-269 (384)
101 3ro0_A Pyrrolidone-carboxylate 24.2 49 0.0017 24.5 2.7 42 23-64 115-156 (223)
102 3giu_A Pyrrolidone-carboxylate 22.7 54 0.0019 24.0 2.7 42 23-64 115-156 (215)
103 2r44_A Uncharacterized protein 22.1 93 0.0032 23.0 4.0 28 61-88 268-295 (331)
104 3ox6_A Calcium-binding protein 22.0 1.5E+02 0.005 18.3 5.2 49 61-109 88-143 (153)
105 2ggz_A Guanylyl cyclase-activa 20.8 1.2E+02 0.0042 20.6 4.1 39 60-98 134-172 (211)
106 3qrx_A Centrin; calcium-bindin 20.8 1.7E+02 0.0058 18.5 6.2 50 60-109 100-155 (169)
107 1x10_A Pyrrolidone-carboxylate 20.7 52 0.0018 23.9 2.2 43 22-64 112-154 (208)
108 2c9o_A RUVB-like 1; hexameric 20.6 78 0.0027 25.1 3.4 62 27-88 368-435 (456)
109 4hps_A Pyrrolidone-carboxylate 20.3 53 0.0018 24.4 2.2 42 23-64 136-177 (228)
110 3tl4_X Glutaminyl-tRNA synthet 20.2 77 0.0026 22.9 3.0 41 47-88 84-127 (187)
111 1qvr_A CLPB protein; coiled co 20.1 62 0.0021 28.0 2.9 34 59-92 87-120 (854)
No 1
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=3.1e-50 Score=284.64 Aligned_cols=123 Identities=96% Similarity=1.346 Sum_probs=105.3
Q ss_pred CCCCCCCCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechh
Q psy17762 2 SGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 81 (124)
Q Consensus 2 ~~~gk~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~ 81 (124)
||+||+|+.+++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+|+||||++||+|+|+++|.++++++|+|+
T Consensus 1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~ 80 (123)
T 2nqb_C 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 80 (123)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 47788888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhCchHHhhhhcCceeccCccCCCccccccCcccccCC
Q psy17762 82 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA 124 (124)
Q Consensus 82 ~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~~~ 124 (124)
||++||+||+|||+||+++||++|||+|+||++|++||+++|+
T Consensus 81 hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~~~ 123 (123)
T 2nqb_C 81 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA 123 (123)
T ss_dssp HHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC-----
T ss_pred HHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCcccccCC
Confidence 9999999999999999999999999999999999999998875
No 2
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=7.1e-50 Score=284.78 Aligned_cols=123 Identities=90% Similarity=1.309 Sum_probs=105.0
Q ss_pred CCCCCC-CCCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceec
Q psy17762 1 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79 (124)
Q Consensus 1 m~~~gk-~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~ 79 (124)
|||+|| +++.+++.+|+|+|+||+|||+||+|||+++.+++||+++|+|||+|+||||++||+|+|+++|.++++++|+
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 899888 7777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhCchHHhhhhcCceeccCccCCCccccccCcccccC
Q psy17762 80 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123 (124)
Q Consensus 80 p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~~ 123 (124)
|+||++||+||+|||+||+++||++|||+|+||++|++||+++|
T Consensus 81 p~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (129)
T 1tzy_A 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 124 (129)
T ss_dssp HHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred HHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCcccccc
Confidence 99999999999999999999999999999999999999998764
No 3
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=2.6e-49 Score=278.85 Aligned_cols=119 Identities=64% Similarity=0.992 Sum_probs=106.7
Q ss_pred CCCCCCCCCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceech
Q psy17762 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 80 (124)
Q Consensus 1 m~~~gk~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p 80 (124)
|||+| |+.+++.+|+|+|+||+|||+||+|||++++|++||+++|+|||+|+||||++||+|+|+++|+++++++|+|
T Consensus 1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp 78 (120)
T 2f8n_G 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTP 78 (120)
T ss_dssp -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcH
Confidence 88765 6777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhCchHHhhhhcCceeccCccCCCccccccCcccc
Q psy17762 81 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121 (124)
Q Consensus 81 ~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~ 121 (124)
+||++||+||+|||+||+++||++|||+|+||++|++||++
T Consensus 79 ~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 79 RHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp HHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred HHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 99999999999999999999999999999999999999875
No 4
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=7e-49 Score=285.09 Aligned_cols=123 Identities=90% Similarity=1.290 Sum_probs=104.2
Q ss_pred CCCCCCC-CCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceec
Q psy17762 1 MSGRGKG-GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79 (124)
Q Consensus 1 m~~~gk~-~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~ 79 (124)
|+|+||+ |+.+++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+||||||++||+|+|+++|.++++++|+
T Consensus 20 ~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrIt 99 (149)
T 2f8n_K 20 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 99 (149)
T ss_dssp --------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 8888885 777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhCchHHhhhhcCceeccCccCCCccccccCcccccC
Q psy17762 80 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123 (124)
Q Consensus 80 p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~~ 123 (124)
|+||++||+||+|||+||+++||++|||+|+||++|++||++++
T Consensus 100 prhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~ 143 (149)
T 2f8n_K 100 PRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESH 143 (149)
T ss_dssp HHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred HHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCcccccc
Confidence 99999999999999999999999999999999999999998764
No 5
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=7.3e-48 Score=275.03 Aligned_cols=119 Identities=77% Similarity=1.192 Sum_probs=107.2
Q ss_pred CCCCCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHH
Q psy17762 5 GKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 84 (124)
Q Consensus 5 gk~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~ 84 (124)
||+++.+++.+|+|+|+||+|||+||+|||+++.+++||+++|+|||+|+||||++||+|+|+++|.++++++|+|+||+
T Consensus 6 ~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~ 85 (131)
T 1id3_C 6 GKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 85 (131)
T ss_dssp ----------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred CCCCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHH
Confidence 44566677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCchHHhhhhcCceeccCccCCCccccccCcccccC
Q psy17762 85 LAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123 (124)
Q Consensus 85 ~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~~ 123 (124)
+||+||+|||+||+++||++|||+|+||++|++||++++
T Consensus 86 lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (131)
T 1id3_C 86 LAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKA 124 (131)
T ss_dssp HHHHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSC
T ss_pred HHHhccHHHHHHhcCceecCCccCCCccHHHcCcccccc
Confidence 999999999999999999999999999999999998865
No 6
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=2.2e-47 Score=271.59 Aligned_cols=122 Identities=63% Similarity=0.939 Sum_probs=99.5
Q ss_pred CCCC--CC-CCCCCCccCCCCcccccccchhhhhHHHhcCCcc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy17762 1 MSGR--GK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 76 (124)
Q Consensus 1 m~~~--gk-~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~-~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k 76 (124)
|||. |+ +++.+++.+|+|+|+||+|||+||+|||++++|+ +||+++|+|||+||||||++||+|+|+++|++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k 80 (128)
T 1f66_C 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80 (128)
T ss_dssp ----------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6742 22 4455667899999999999999999999999977 599999999999999999999999999999999999
Q ss_pred eechhhHHHhhhCchHHhhhhcCceeccCccCCCccccccCcccccC
Q psy17762 77 RIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123 (124)
Q Consensus 77 ~I~p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~~~~k~~~~ 123 (124)
+|+|+||++||+||+|||+||+ .||++|||+|+||++|++||+++|
T Consensus 81 rItprhi~lAI~nDeEL~~Ll~-~tia~ggv~P~i~~~l~~k~~~~~ 126 (128)
T 1f66_C 81 RITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126 (128)
T ss_dssp EECHHHHHHHHHHSHHHHHHCC-SEETTCCCCCCCCGGGC-------
T ss_pred eEcHHHHHHHHhccHHHhhhhc-ceecCCccCCCCCHHhcCcccccC
Confidence 9999999999999999999996 599999999999999999998775
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=1.3e-36 Score=228.83 Aligned_cols=98 Identities=63% Similarity=0.989 Sum_probs=94.0
Q ss_pred ccCCCCcccccccchhhhhHHHhcCCcc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCch
Q psy17762 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 13 ~~~s~s~ragl~fPv~ri~R~lk~~~~~-~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~ 91 (124)
+..|+|+|+||+|||+||+|||++++++ .||+++|+|||+|+||||++||+|+|+++|+++++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 5679999999999999999999998776 799999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCceeccCccCCCc
Q psy17762 92 ELNKLLSGVTIAQGGVLPNI 111 (124)
Q Consensus 92 eL~~L~~~~~i~~gg~~p~~ 111 (124)
|||+||+ .+|++|||+|||
T Consensus 174 eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHh-hhhcCCCcCCCC
Confidence 9999996 699999999997
No 8
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.91 E-value=1.1e-24 Score=148.18 Aligned_cols=81 Identities=17% Similarity=0.345 Sum_probs=62.5
Q ss_pred CCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhh
Q psy17762 17 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96 (124)
Q Consensus 17 ~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L 96 (124)
++.+++++||++||+|+||.+.+..|||.+|++|+++++|||+.||+++|++.|.++++++|+|+||..||++|++|++|
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h
Q psy17762 97 L 97 (124)
Q Consensus 97 ~ 97 (124)
+
T Consensus 84 ~ 84 (98)
T 1jfi_A 84 K 84 (98)
T ss_dssp -
T ss_pred H
Confidence 9
No 9
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.91 E-value=3.9e-25 Score=198.10 Aligned_cols=102 Identities=26% Similarity=0.438 Sum_probs=82.1
Q ss_pred ccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 13 ~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
.-.|+|+||||+|||+||+|+| ++.|++||+.+|||||+||||||++||||+|+|+|++.++.+|+|+||++|+++|+|
T Consensus 93 ~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~e 171 (1049)
T 3ksy_A 93 AIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKV 171 (1049)
T ss_dssp HHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSS
T ss_pred hhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHH
Confidence 3478999999999999999999 778999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCceeccCccCCCcccccc
Q psy17762 93 LNKLLSGVTIAQGGVLPNIQAVLL 116 (124)
Q Consensus 93 L~~L~~~~~i~~gg~~p~~~~~~~ 116 (124)
|..||++. ...+|++|+......
T Consensus 172 L~~l~~~d-ee~~~~lp~~~~~~~ 194 (1049)
T 3ksy_A 172 LMDMFHQD-VEDINILSLTDEEPS 194 (1049)
T ss_dssp HHHHCC------------------
T ss_pred HHHHHhhc-cccccCCCCccccCc
Confidence 99999764 456788887665433
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.83 E-value=9.2e-21 Score=128.48 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=72.0
Q ss_pred CcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhh
Q psy17762 18 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97 (124)
Q Consensus 18 s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~ 97 (124)
..-.+++||++||+|+||.+.+..+||.+|++|+++++|||+.++++.|++.|.++++++|+++||..||.+|++|++|.
T Consensus 13 ~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp -------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 34457899999999999999988999999999999999999999999999999999999999999999999999999998
No 11
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.83 E-value=8.9e-21 Score=129.87 Aligned_cols=88 Identities=25% Similarity=0.378 Sum_probs=71.1
Q ss_pred CCCCCCCCCC-------CCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy17762 1 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (124)
Q Consensus 1 m~~~gk~~~~-------~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~ 73 (124)
|||+||+||. +++++++++.++ ||++.|+|+++..++ .|||.+|.++|+.+|||++.+|++.|.++|+|+
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp --------------------CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8887775553 566779999998 899999999999984 899999999999999999999999999999999
Q ss_pred CCceechhhHHHhhhCch
Q psy17762 74 KKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 74 ~~k~I~p~~i~~AI~~d~ 91 (124)
++++|+++||.+|+++..
T Consensus 78 kRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 78 KRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp TCSEECHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHcC
Confidence 999999999999998653
No 12
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.83 E-value=7.8e-21 Score=130.19 Aligned_cols=88 Identities=25% Similarity=0.378 Sum_probs=63.2
Q ss_pred CCCCCCCCCC-------CCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy17762 1 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (124)
Q Consensus 1 m~~~gk~~~~-------~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~ 73 (124)
|||+||+||. +++++++++.++ ||++.|+|+++..++ .|||.+|.++|+.+|||++.+|++.|.++|+|+
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888776663 566777999998 999999999999985 899999999999999999999999999999999
Q ss_pred CCceechhhHHHhhhCch
Q psy17762 74 KKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 74 ~~k~I~p~~i~~AI~~d~ 91 (124)
++++|+++||.+|+++..
T Consensus 78 kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 78 KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp TCSEECHHHHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHHHcC
Confidence 999999999999998654
No 13
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.81 E-value=6.1e-20 Score=128.68 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=73.4
Q ss_pred ccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhh
Q psy17762 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~ 97 (124)
..+||++||+|+||.+.+..+||.+|++|+++++|||+.+|++.|++.|..+++++|+|+||..||.+|++|++|.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 4579999999999999899999999999999999999999999999999999999999999999999999999887
No 14
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.76 E-value=5.7e-19 Score=126.89 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=62.8
Q ss_pred ccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHH-HhCCCceechhhHHHhhhCch
Q psy17762 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 13 ~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a-~~~~~k~I~p~~i~~AI~~d~ 91 (124)
+..+++.+..++||++||+|+||.+....+|+..|+++++.++|||+.+|++.|++.| ...++++|++.||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 4577888899999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHhhhh
Q psy17762 92 ELNKLL 97 (124)
Q Consensus 92 eL~~L~ 97 (124)
+|+||.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 999998
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.57 E-value=2.7e-15 Score=109.25 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=67.9
Q ss_pred cccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 19 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 19 ~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
.+.++.||++.|.|+||+++ +.|||++|.++|+.+||+|+.+|+..|.++|+|++|+||+++||.+|++++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~g-~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHTT-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 47889999999999999984 899999999999999999999999999999999999999999999999875
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.51 E-value=5.2e-14 Score=96.10 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=65.8
Q ss_pred CCCCCCccCCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHh
Q psy17762 7 GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 86 (124)
Q Consensus 7 ~~~~~~~~~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~A 86 (124)
+|.++++++.+.+..+ +|.+.|.|+++..+ ..|||.++...|+.+|||++.+|+..|..+|+|+++++|+++||.+|
T Consensus 13 ~g~kr~~k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~A 89 (102)
T 1id3_B 13 GGAKRHRKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYA 89 (102)
T ss_dssp -----------CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CccchHHHHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHH
Confidence 3445777888888777 67888999999987 79999999999999999999999999999999999999999999999
Q ss_pred hhCc
Q psy17762 87 IRND 90 (124)
Q Consensus 87 I~~d 90 (124)
++..
T Consensus 90 Lkr~ 93 (102)
T 1id3_B 90 LKRQ 93 (102)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9854
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.44 E-value=2.5e-13 Score=86.51 Aligned_cols=66 Identities=32% Similarity=0.439 Sum_probs=63.0
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
..||.+.|.|++++.+ ..|+|.++...|..++|+++.+|++.|..+|.|.+|++|+++||.+|+++
T Consensus 5 ~~lp~a~v~Rl~r~~g-~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHHHcC-cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 3689999999999986 89999999999999999999999999999999999999999999999874
No 18
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.40 E-value=6.7e-13 Score=83.88 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=61.5
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.||.++|.|+||+. ...||+++|...|..++|+|+.+|.+.|...|.+++|++|+|+||..|++
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 58999999999998 58999999999999999999999999999999999999999999999985
No 19
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.27 E-value=2.1e-11 Score=80.31 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCCCcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 15 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 15 ~s~s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
+-+.+..+ +|.+.|.|+++..+ ..|||.++...|+.++||++.+|+..|..+|+|.+|++|+++||.+|++..
T Consensus 3 ~~r~~~~~--ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 3 VLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CGGGGCCS--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred cccccCCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34555666 67788999999988 799999999999999999999999999999999999999999999999865
No 20
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.21 E-value=3e-11 Score=80.70 Aligned_cols=68 Identities=10% Similarity=0.248 Sum_probs=63.2
Q ss_pred cccccchhhhhHHHhcCC-cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 21 AGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~-~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..+.||.++|.|+||+.. ...|||.+|...|+.++|.|+.+|...|...|.+.+|++|+++||..|++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 367899999999999984 46899999999999999999999999999999999999999999999997
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.07 E-value=3.5e-10 Score=73.03 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=60.9
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..||.+.|.|+|++.--..+||.+|...+..++|.|+.+|...|...|.++++++|+++||..|++
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 369999999999975336899999999999999999999999999999999999999999999985
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.06 E-value=3e-10 Score=82.55 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=61.0
Q ss_pred ccchhhhhHHHhcC-CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhh
Q psy17762 24 QFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 87 (124)
Q Consensus 24 ~fPv~ri~R~lk~~-~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI 87 (124)
.||.+.|.|+||+. + ..|||.+|...|+.++|.|+.+|...|.++|.|.+||+|+++||..|+
T Consensus 4 ~LP~a~V~Riik~~lg-~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIG-ERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTST-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 58999999999998 6 599999999999999999999999999999999999999999999999
No 23
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.05 E-value=2.1e-10 Score=81.01 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=64.3
Q ss_pred ccccchhhhhHHHhc-CCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhh
Q psy17762 22 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96 (124)
Q Consensus 22 gl~fPv~ri~R~lk~-~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L 96 (124)
.+.||+++|.|+|++ .....+||.+|...|+.++|.|+.+|...|...|.+.+|++|+++||..|+....-+++|
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 578999999999996 345799999999999999999999999999999999999999999999999876544443
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.03 E-value=5.9e-10 Score=71.23 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=62.5
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
-.||+..|+++.+..| ..+||++|...|+.-+||-+.||++.|.+.++|.+|++++.+||+.|++
T Consensus 5 s~lp~~~v~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4799999999999998 7999999999999999999999999999999999999999999999975
No 25
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.94 E-value=6.1e-10 Score=76.87 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=62.2
Q ss_pred ccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHH
Q psy17762 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 93 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL 93 (124)
.+.+|.+-|.|++++.+ ..|||.++...|..+++.++.+|...|..+|+|.+|++|+++||.+|++.+..+
T Consensus 5 d~~lP~a~I~Ri~r~~g-~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHYV-KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHHH-CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 46789999999999985 899999999999999999999999999999999999999999999999965544
No 26
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.84 E-value=9.8e-09 Score=65.19 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=57.5
Q ss_pred hhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 29 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 29 ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
.|+|+|++.+ +.+++..++..|.-.+|-++.+|++.|..+|.|.|+++|+.+||++||+.
T Consensus 6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 5899999998 89999999999999999999999999999999999999999999999974
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.72 E-value=2.3e-08 Score=74.18 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=68.4
Q ss_pred CcccccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhh
Q psy17762 18 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97 (124)
Q Consensus 18 s~ragl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~ 97 (124)
.....+.||++.|.|+||+..-..+|+.+|...|..+++-|+..|...|...|.+.+|++|+++||..|+. +-+|..+.
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 34456889999999999997436899999999999999999999999999999999999999999999997 55555544
No 28
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.52 E-value=2.3e-07 Score=60.18 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=59.6
Q ss_pred cccchhhhhHHHhcC-----CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 23 LQFPVGRIHRLLRKG-----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 23 l~fPv~ri~R~lk~~-----~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
|-+|..++.|++++- + ..|++++|...|.-+.|.++-+++|.+...|.|.++.+|+|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~-~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKT-DLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCS-SCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 567888888988875 3 5899999999999999999999999999999999999999999999975
No 29
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.1e-07 Score=61.16 Aligned_cols=77 Identities=14% Similarity=0.041 Sum_probs=63.8
Q ss_pred cccccchhhhhHHH-hcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcC
Q psy17762 21 AGLQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 99 (124)
Q Consensus 21 agl~fPv~ri~R~l-k~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~ 99 (124)
+.|.+-|++|-.-. +.. ...||..+...|+..++..+.+|.+-+...|+|+||++|+++||.++++.++.|..++.+
T Consensus 12 aal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 12 ARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 34566666665333 222 356999999999999999999999999999999999999999999999999999988754
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.47 E-value=1.9e-07 Score=64.57 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=62.5
Q ss_pred cccccchhhhhHHHhcCCcccc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhh
Q psy17762 21 AGLQFPVGRIHRLLRKGNYAER---VGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~~~~r---vs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~ 97 (124)
+.|.+.|++ ++++.+ ..| ||..+...|+.+++.++.+|.+.+...|+|.||++|+++||.++++.++.|..++
T Consensus 27 aal~y~V~r---Ivke~g-aer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l 102 (113)
T 4dra_A 27 AAVHYTVGC---LCEEVA-LDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYI 102 (113)
T ss_dssp HHHHHHHHH---HHHHHH-HHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHH---HHHHHH-HHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHH
Confidence 345566544 455543 344 9999999999999999999999999999999999999999999999999998876
Q ss_pred c
Q psy17762 98 S 98 (124)
Q Consensus 98 ~ 98 (124)
+
T Consensus 103 ~ 103 (113)
T 4dra_A 103 T 103 (113)
T ss_dssp H
T ss_pred H
Confidence 5
No 31
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.8e-07 Score=71.82 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=56.4
Q ss_pred hhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 30 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 30 i~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
+.|+++.++ +.|||.++...+..+||.++.+|+..|..+|+|+++++|+++||.+|++.
T Consensus 167 ~~RlaRrgG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 167 DEEDGDKGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp CCTTSCCTT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHHHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 569999998 89999999999999999999999999999999999999999999999974
No 32
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=7.8e-07 Score=62.16 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=50.2
Q ss_pred hcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 35 RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 35 k~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
+.++ +.|||.++...+..+||.++.+|+..|..+++|.+||+|+++||.+|++.
T Consensus 58 ~~gG-vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 58 VPRG-SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp CCCC-SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred CccC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 3445 79999999999999999999999999999999999999999999999873
No 33
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.39 E-value=5.2e-07 Score=59.11 Aligned_cols=66 Identities=23% Similarity=0.138 Sum_probs=59.1
Q ss_pred cccchhhhhHHHhcCC------cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 23 LQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~------~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
|-+|..++.|+.++-. ...|++++|...|.-+.|.++-+++|.+...|.|.++.+|.|+||++|.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 4467888888888754 35799999999999999999999999999999999999999999999975
No 34
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.35 E-value=6.8e-07 Score=61.24 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=61.5
Q ss_pred ccccchhhhhHHHhcCC--cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 22 GLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~--~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
.|.+-|++| .++.+ ...+++..+...|+-+++.++.+|..-+..+|+|.||++|+++||.++++.++.|...+.
T Consensus 20 al~~~V~rI---~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 20 AVHYTTGCL---CQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHH---HHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHH---HHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 345555444 44432 237999999999999999999999999999999999999999999999999998876654
No 35
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.22 E-value=2e-06 Score=61.38 Aligned_cols=69 Identities=22% Similarity=0.115 Sum_probs=62.1
Q ss_pred cccccchhhhhHHHhcCC------cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 21 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~------~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
.+|-+|...|.|++++-. ...|++++|...|.-+.|.++-+++|.+...|.|.++.+|+|+||++|.+-
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArri 132 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 132 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHh
Confidence 468899999999998854 357999999999999999999999999999999999999999999999763
No 36
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.21 E-value=1.8e-06 Score=58.51 Aligned_cols=68 Identities=24% Similarity=0.184 Sum_probs=58.3
Q ss_pred cccccchhhhhHHHhcCC-------cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 21 AGLQFPVGRIHRLLRKGN-------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~-------~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.+|-+|..+|.|+.++-. ...|++++|...|.-+.|.++-+++|.+...|.|.++.+|.|.||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 478899999999998854 15799999999999999999999999999999999999999999999964
No 37
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.20 E-value=3e-06 Score=60.25 Aligned_cols=66 Identities=26% Similarity=0.267 Sum_probs=61.2
Q ss_pred ccccchhhhhHHHhcC-----CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 22 GLQFPVGRIHRLLRKG-----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~-----~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+|-+|...|.|+.++- + ..|++++|...|.-+.|.++-+++|.+...|.|.++.+|.|.||++|.+
T Consensus 60 ~lLIpk~PF~RLVREI~~~~~~-~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 60 ELLIRKLPFQRLVREIAQDFKT-DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp SCCSCHHHHHHHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHHhhh-hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 5778999999999885 3 5899999999999999999999999999999999999999999999975
No 38
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.19 E-value=1.7e-06 Score=62.65 Aligned_cols=70 Identities=21% Similarity=0.112 Sum_probs=62.6
Q ss_pred cccccchhhhhHHHhcCC------cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 21 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~------~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
.+|-+|...|.|++++-. ...|++++|...|.-+.|.++-+++|.|...|.|.++.+|+|+||++|.+--
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 468899999999998853 2579999999999999999999999999999999999999999999998643
No 39
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.15 E-value=2e-06 Score=61.41 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=64.1
Q ss_pred cccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcC
Q psy17762 21 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 99 (124)
Q Consensus 21 agl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~ 99 (124)
+.|.+-|++|-.-.-.. ....||..+...|+.+++.++.+|..-+..+|+|.||++|+++||.++++.++.|..++.+
T Consensus 19 aAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 19 AAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 34566666655422111 2367999999999999999999999999999999999999999999999999999888763
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.09 E-value=6e-06 Score=57.69 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=58.0
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.|. ..|+|+|++-.-...||+.|...|...++.+.+.|...|.+.+..+++++|++++|+.|++
T Consensus 34 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 34 SYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred hHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 344 5789999996655689999999999999999999999999999999999999999999996
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.03 E-value=8.8e-06 Score=57.07 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=59.0
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
-.|.+ .|+|+|++-.-...||+.|...|...++.+.+.|...|...+..+++++|++++|+.|++
T Consensus 36 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45555 799999996545689999999999999999999999999999999999999999999996
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.57 E-value=0.00011 Score=54.62 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=56.5
Q ss_pred hhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 28 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 28 ~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
..|+|.|++-.-...||..|..+|...++.++..|...|.+.+..+++++|+++||+.|++
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3689999997656789999999999999999999999999999999999999999999997
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.88 E-value=0.0021 Score=42.39 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=54.7
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC-CceechhhHHHhhh
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIR 88 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~-~k~I~p~~i~~AI~ 88 (124)
.||-..|+|++..- ....|+.+..+.++++--.|+.||+|.|.......+ ...|.|.||..|.+
T Consensus 16 ~f~k~~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 46667799999774 478999999999999999999999999998776654 55799999999975
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.66 E-value=0.0067 Score=39.28 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=57.2
Q ss_pred ccccchhhhhHHHhcCC--cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHh
Q psy17762 22 GLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 86 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~--~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~A 86 (124)
+..||..-|.|+|+..- ..-||+.+|...++..|+-|+.|-+.+|...|...+...|..+||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 56899999999998832 358999999999999999999999999999998888889999999873
No 45
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.61 E-value=0.0078 Score=39.28 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=57.1
Q ss_pred ccccccchhhhhHHHhcCC--cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHh
Q psy17762 20 RAGLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 86 (124)
Q Consensus 20 ragl~fPv~ri~R~lk~~~--~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~A 86 (124)
.++..||..-|.|+|+..- ..-||+.+|...++..|+-|+.|-+-.|...|...+...|..+||+..
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 3567899999999999642 358999999999999999999999999999888888888999999874
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.85 E-value=0.022 Score=36.45 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=58.8
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
.++-.++..++++-.-...+..++-..|..+.+-|+..++..|+..|+|.+..++.+.||++.++.+
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 4566778888887555688999999999999999999999999999999999999999999987654
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.046 Score=41.81 Aligned_cols=67 Identities=24% Similarity=0.212 Sum_probs=54.2
Q ss_pred ccccchhhhhHHHhcCC--c-----ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 22 GLQFPVGRIHRLLRKGN--Y-----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~--~-----~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.|-+|-.++.|+.++-- + ..|..++|...|.-+-|.++-.++|.+.-.|.|.++-+|.|.|+++|-+
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarr 82 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARR 82 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHT
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHH
Confidence 45566666666665521 1 3689999999999999999999999999999999999999999999953
No 48
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=90.58 E-value=0.54 Score=33.49 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=53.2
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHH
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 85 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~ 85 (124)
.+++.+++|+++... .--|..+-.--+..++|--+.+++..|...|+.|||..|.|.|+-.
T Consensus 2 vm~~~~~e~lFR~aa-~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI 62 (148)
T 1wwi_A 2 LMKVAEFERLFRQAA-GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI 62 (148)
T ss_dssp CSCHHHHHHHHHHHH-CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC
T ss_pred cCCHHHHHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 467889999999964 5667778888889999999999999999999999999999999754
No 49
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=87.43 E-value=0.68 Score=31.10 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
+.++++.|...|...+...|+|+||-+|+-.+++...++.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 4578899999999999999999999999988776555554
No 50
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=83.24 E-value=1.3 Score=29.71 Aligned_cols=33 Identities=30% Similarity=0.208 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCch
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~ 91 (124)
+.++++.|...|...+...|+|+||-+|+-.++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 356889999999999999999999999997665
No 51
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=82.92 E-value=0.8 Score=33.29 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=53.6
Q ss_pred ccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHH
Q psy17762 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 85 (124)
Q Consensus 24 ~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~ 85 (124)
.+++.+++|+++... .--|..+-.--+..++|--+.+++..|...|+.++|..|.|.||-+
T Consensus 26 vmg~~kferlFR~aa-gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPI 86 (171)
T 1r4v_A 26 PKGFDKLDHYFRTEL-DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNI 86 (171)
T ss_dssp CTTHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCC
T ss_pred cCChHHHHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 789999999999964 5667777778888999999999999999999999999999999754
No 52
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=82.43 E-value=1 Score=30.73 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCch--HHhhhh
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLL 97 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~--eL~~L~ 97 (124)
+.++++.|...|...+...|+|+||-+|+-.++ ....++
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL 52 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVL 52 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHH
Confidence 457889999999999999999999999997654 334444
No 53
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=80.94 E-value=1.3 Score=29.85 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
+.++++.|...|...+...|+|+||-+|+-.+++
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~ 43 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGE 43 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 3568899999999999999999999999976543
No 54
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=80.19 E-value=1.2 Score=30.30 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCc--hHHhhhhc
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND--EELNKLLS 98 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d--~eL~~L~~ 98 (124)
+.++++.|...|...+...|+|+||-+|+-.| .....++.
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 35688999999999999999999999999765 33444443
No 55
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=77.73 E-value=1.7 Score=29.50 Aligned_cols=40 Identities=38% Similarity=0.479 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchH--Hhhhhc
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 98 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e--L~~L~~ 98 (124)
+..+++.|..+|...+...|+++||-+|+-.|++ ...++.
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 4567889999999999999999999999986543 445554
No 56
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=77.54 E-value=2.3 Score=30.22 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=32.5
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhCCCceechhhHHHhhhCch
Q psy17762 51 LAAVMEYLA---AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 51 LaavLEyl~---~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~ 91 (124)
+..+++.|+ .++++.|...|...+...|.|+||-+|+-.|+
T Consensus 18 l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 18 LPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 444445443 45788999999999999999999999998764
No 57
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=75.55 E-value=2 Score=29.16 Aligned_cols=40 Identities=23% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCch--HHhhhhc
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 98 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~--eL~~L~~ 98 (124)
+..+++.|..+|...+...|+++||-+|+-.|+ ....++.
T Consensus 86 ~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 86 AKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 357888899999999999999999999997554 4555554
No 58
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=75.49 E-value=14 Score=23.98 Aligned_cols=48 Identities=6% Similarity=0.153 Sum_probs=39.2
Q ss_pred cchhhhhHHHhcC--CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17762 25 FPVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72 (124)
Q Consensus 25 fPv~ri~R~lk~~--~~~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~ 72 (124)
+|..-+-|+|+.. +..-||+.+|...++..++-|+.|-+-.|......
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777788888853 23589999999999999999999999999765544
No 59
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=74.73 E-value=3.4 Score=27.53 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
+..+++.|..+|...+...|.++||-+|+-.+.+
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~ 117 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcC
Confidence 4568899999999999999999999999987653
No 60
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=70.48 E-value=4.2 Score=28.85 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHH-hCCCceechhhHHHhhhCch
Q psy17762 60 AEVLELAGNAAR-DNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 60 ~eIlelA~~~a~-~~~~k~I~p~~i~~AI~~d~ 91 (124)
.++|+.|..+|. ..+...|..+||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 468899999999 89999999999999998777
No 61
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=69.43 E-value=5.9 Score=26.38 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhC-chHHhhhhc
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRN-DEELNKLLS 98 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~-d~eL~~L~~ 98 (124)
+..+++.|..+|...+...|+++||-+|+-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 4567889999998888889999999999984 333444443
No 62
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=67.47 E-value=3.9 Score=27.44 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCch
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~ 91 (124)
+..+++.|..+|...+...|.++||-+|+-.+.
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 456888999999999999999999999997554
No 63
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=61.42 E-value=28 Score=25.92 Aligned_cols=66 Identities=21% Similarity=0.277 Sum_probs=47.2
Q ss_pred cccc---hhhhhHHHhcC----CcccccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 23 LQFP---VGRIHRLLRKG----NYAERVGAGAPVYLAAVME------YLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 23 l~fP---v~ri~R~lk~~----~~~~rvs~~A~v~LaavLE------yl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+.|| ...+..+++.. .....++.++..+++.... ..+..+++.+...|...+...|+.+|++.++.
T Consensus 196 i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 196 LVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp CCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred EeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 4454 34555555542 1134678888888888777 55668888888888887888999999998875
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=59.22 E-value=10 Score=32.13 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
+.+++..|...|...+...|+++||-+|+-.|++...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4578899999999999999999999999988877666554
No 65
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=58.40 E-value=20 Score=25.63 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcCc
Q psy17762 58 LAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGV 100 (124)
Q Consensus 58 l~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~~ 100 (124)
.+.++++.-...-...|.+-|+|.++..-|..|.+-..+|...
T Consensus 75 kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~~ 117 (165)
T 2vxz_A 75 LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSSI 117 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHHh
Confidence 6777888777777788999999999999999999999999753
No 66
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=53.65 E-value=20 Score=21.36 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=16.9
Q ss_pred HHHHHHhCCCceechhhHHHhhh
Q psy17762 66 AGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 66 A~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
|...|-..+...|+.+|+..|+.
T Consensus 49 A~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 49 AGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHH
Confidence 33444455677899999999985
No 67
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=50.28 E-value=43 Score=25.10 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=35.8
Q ss_pred cccCCChHHHHHHHHH-H---HHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 41 ERVGAGAPVYLAAVME-Y---LAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 41 ~rvs~~A~v~LaavLE-y---l~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
..++.++..+|+...+ . .+..+++.|...|...+...|+.+|++.++..
T Consensus 277 ~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 277 VEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4577777777777666 2 23456777777777778889999999999863
No 68
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=48.61 E-value=49 Score=20.98 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHhhh------CchHHhhhhcCceeccCccC
Q psy17762 60 AEVLELAGNAARDNKKTRIIPRHLQLAIR------NDEELNKLLSGVTIAQGGVL 108 (124)
Q Consensus 60 ~eIlelA~~~a~~~~~k~I~p~~i~~AI~------~d~eL~~L~~~~~i~~gg~~ 108 (124)
.+-+..+.+....++...|+.+++..++. .++++..+|........|.+
T Consensus 95 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i 149 (161)
T 3fwb_A 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEI 149 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSSE
T ss_pred HHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC
Confidence 34556666666666777899999999886 66788888876655555544
No 69
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=47.71 E-value=32 Score=25.50 Aligned_cols=47 Identities=19% Similarity=-0.024 Sum_probs=34.3
Q ss_pred ccCCChHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 42 RVGAGAPVYLAAVMEY-------LAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 42 rvs~~A~v~LaavLEy-------l~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.++.++..||+....- -+..+++.|...|...++..|+++|+..|+.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 5677676666655443 2345777788888878888899999998874
No 70
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=45.85 E-value=33 Score=20.71 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=28.8
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 41 ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 41 ~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
..+...+.-|-.|=|+.++.|-...|. ..++..|+.+|+..|+..
T Consensus 23 ~~lA~~t~G~SGADi~~l~~eAa~~ai----~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 23 DSLIIRNDSLSGAVIAAIMQEAGLRAV----RKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp TTTTTSSCCCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH----HhccCCcCHHHHHHHHHH
Confidence 444444445556666666665444443 345678999999999864
No 71
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=44.80 E-value=16 Score=29.44 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
+.++++.|...|...+...|+|+||-+|+-.+
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~ 41 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhc
Confidence 45678999999999999999999999999754
No 72
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=44.51 E-value=14 Score=29.73 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
+.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 84 ~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 3467889999999889999999999999986653
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.43 E-value=44 Score=24.76 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=40.3
Q ss_pred hhhhHHHhc----CCcccccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 28 GRIHRLLRK----GNYAERVGAGAPVYLAAVME------YLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 28 ~ri~R~lk~----~~~~~rvs~~A~v~LaavLE------yl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
..+..+++. ......++.++..+++.... ..+.+++..+...|...+...|+.+|++.|+..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 445555554 11123566667777766665 234457777877777778888999999988754
No 74
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=41.47 E-value=50 Score=27.36 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 60 ~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
..+++.|...|...++..|+++|++.|+..
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 357788888888888999999999999964
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=39.77 E-value=17 Score=30.45 Aligned_cols=64 Identities=8% Similarity=0.172 Sum_probs=43.8
Q ss_pred cchhhhhHHHhcCC--cccccCCChHHHHHHHHHHH------------------HHHHHHHHHHHHHhCCCceechhhHH
Q psy17762 25 FPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYL------------------AAEVLELAGNAARDNKKTRIIPRHLQ 84 (124)
Q Consensus 25 fPv~ri~R~lk~~~--~~~rvs~~A~v~LaavLEyl------------------~~eIlelA~~~a~~~~~k~I~p~~i~ 84 (124)
++...+.+++...+ ....++..|..+|......+ +..++.+|...|.-.++..|+++|+.
T Consensus 502 l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 581 (595)
T 3f9v_A 502 IDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAE 581 (595)
T ss_dssp TCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHH
Confidence 44444555543322 13478888877776553321 34688888888988899999999999
Q ss_pred Hhhh
Q psy17762 85 LAIR 88 (124)
Q Consensus 85 ~AI~ 88 (124)
.|+.
T Consensus 582 ~Ai~ 585 (595)
T 3f9v_A 582 RAIN 585 (595)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
No 76
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=39.38 E-value=14 Score=18.17 Aligned_cols=12 Identities=75% Similarity=1.160 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCc
Q psy17762 2 SGRGKGGKAKAK 13 (124)
Q Consensus 2 ~~~gk~~~~~~~ 13 (124)
||+||+||.-.+
T Consensus 2 sgrgkggkglgk 13 (26)
T 4gqb_C 2 SGRGKGGKGLGK 13 (26)
T ss_pred CCCCcCCcccCc
Confidence 677777765433
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.94 E-value=21 Score=30.37 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCc
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d 90 (124)
+.++++.|..+|...+...|+|+||-+|+-.+
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhc
Confidence 34678999999999999999999999999754
No 78
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=35.37 E-value=15 Score=26.33 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcCceeccCccCCCccccc
Q psy17762 53 AVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115 (124)
Q Consensus 53 avLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~~~i~~gg~~p~~~~~~ 115 (124)
.-.|.++..|++.+.+.+--.....++++++..+=.--..+..+- -..|+.++|.+++....
T Consensus 31 keA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~~~a-mt~iSF~eVdfTfD~~~ 92 (161)
T 3f4m_A 31 PQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGA-MTALSFGEVDFTFEAAV 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH-HHHHHHTSTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHHHHH-HHHhhhhccCccccHHH
Confidence 345788899999999988776777899999998865444444443 45688999999887643
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.90 E-value=24 Score=30.06 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
+.++++.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 3567889999999999999999999999976653
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.74 E-value=33 Score=29.73 Aligned_cols=33 Identities=33% Similarity=0.238 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCch
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~ 91 (124)
+.++++.|...|...+...|+|+||-+|+-.++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~ 42 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDE 42 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 356889999999999999999999999997654
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=33.83 E-value=32 Score=29.09 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
+..+++.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4568899999998889889999999999987653
No 82
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=33.49 E-value=73 Score=26.67 Aligned_cols=83 Identities=19% Similarity=0.111 Sum_probs=48.0
Q ss_pred ccchhhhhHHHhcC---CcccccCCChHHHHHHHHHHHH---------------------HHHHHHHHHHHHhCCCceec
Q psy17762 24 QFPVGRIHRLLRKG---NYAERVGAGAPVYLAAVMEYLA---------------------AEVLELAGNAARDNKKTRII 79 (124)
Q Consensus 24 ~fPv~ri~R~lk~~---~~~~rvs~~A~v~LaavLEyl~---------------------~eIlelA~~~a~~~~~k~I~ 79 (124)
.++...+.++.... .....++..+..||......+= ..++.+|-..|.-.++..++
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 34555555544332 2356788888888776644431 12566777788888999999
Q ss_pred hhhHHHhhhCchHHhhhhcCceeccCccC
Q psy17762 80 PRHLQLAIRNDEELNKLLSGVTIAQGGVL 108 (124)
Q Consensus 80 p~~i~~AI~~d~eL~~L~~~~~i~~gg~~ 108 (124)
|+|++.|+.-=+ .+|..-.+-+.+|.+
T Consensus 473 ~eDV~~Ai~L~~--~Sl~~~a~dp~tg~i 499 (506)
T 3f8t_A 473 PEDVDIAAELVD--WYLETAMQIPGGDEI 499 (506)
T ss_dssp HHHHHHHHHHHH--HHHHHTTC-------
T ss_pred HHHHHHHHHHHH--HHHHHhcCCCCCCeE
Confidence 999999996321 344444445555543
No 83
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=33.08 E-value=46 Score=23.72 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 62 VLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 62 IlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
++..|...|...++..|+.+|++.|+.
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 445555566666777899999999885
No 84
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=32.80 E-value=65 Score=19.77 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 49 VYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 49 v~LaavLEyl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
-|-.|=|+.|+.|-...| -..+...|+.+|+..|+.
T Consensus 44 G~SGADL~~l~~eAa~~a----lr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 44 GASGAEVKGVCTEAGMYA----LRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp SCCHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----HHHcCCCCCHHHHHHHHH
Confidence 344444555554443333 333467899999999885
No 85
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=32.60 E-value=45 Score=20.87 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc-eechhhHHHhhhC-----------chHHhhhhcCceeccCccC
Q psy17762 55 MEYLAAEVLELAGNAARDNKKT-RIIPRHLQLAIRN-----------DEELNKLLSGVTIAQGGVL 108 (124)
Q Consensus 55 LEyl~~eIlelA~~~a~~~~~k-~I~p~~i~~AI~~-----------d~eL~~L~~~~~i~~gg~~ 108 (124)
||.-+.++.+.=-.+....|.. .|+.+.+...+.. +.+++.+++.+-.-..|.+
T Consensus 6 le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~I 71 (98)
T 3n22_A 6 LEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQV 71 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSB
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCC
Confidence 4555555555444455344544 8999999988763 6778888875555444543
No 86
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=32.45 E-value=8 Score=25.24 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+...|.+|...|..++.. |+..||..|-.
T Consensus 49 ltktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 49 LNHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp HHHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 455678888888777775 99999999986
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=29.92 E-value=56 Score=20.04 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=13.4
Q ss_pred hCCCceechhhHHHhhh
Q psy17762 72 DNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 72 ~~~~k~I~p~~i~~AI~ 88 (124)
..+...|+.+|+..|+.
T Consensus 53 r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 53 RARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHSCSSBCHHHHHHHHH
T ss_pred HhccccCCHHHHHHHHH
Confidence 33556799999999985
No 88
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=29.64 E-value=45 Score=19.96 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=14.0
Q ss_pred HHhCCCceechhhHHHhhh
Q psy17762 70 ARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 70 a~~~~~k~I~p~~i~~AI~ 88 (124)
|-..+...|+.+|+..|+.
T Consensus 51 a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 51 AVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp GGTSCCSSBCHHHHHHHHH
T ss_pred HHHhccCCcCHHHHHHHHH
Confidence 3344556799999998875
No 89
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=29.44 E-value=54 Score=23.81 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCceechhhHHHhh
Q psy17762 62 VLELAGNAARDNKKTRIIPRHLQLAI 87 (124)
Q Consensus 62 IlelA~~~a~~~~~k~I~p~~i~~AI 87 (124)
+++.|...|...+...|+.+|++.|+
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 44555555556666789999999886
No 90
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=29.11 E-value=88 Score=21.27 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=26.6
Q ss_pred ccCCChHHHHHHHHHHH---HHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 42 RVGAGAPVYLAAVMEYL---AAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 42 rvs~~A~v~LaavLEyl---~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
.++.++..+|+...+-= +..+++.+...|...+ ..|+.+|++.++.+
T Consensus 193 ~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~~ 242 (242)
T 3bos_A 193 QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLRL 242 (242)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhhC
Confidence 45555555555443321 2234455555554444 46999999988753
No 91
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=29.11 E-value=56 Score=23.19 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCceechhhHHHhh
Q psy17762 62 VLELAGNAARDNKKTRIIPRHLQLAI 87 (124)
Q Consensus 62 IlelA~~~a~~~~~k~I~p~~i~~AI 87 (124)
++..|...|...+...|+.+|++.|+
T Consensus 228 ~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 228 LLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 44455555556666789999999876
No 92
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=28.89 E-value=87 Score=21.17 Aligned_cols=42 Identities=21% Similarity=0.010 Sum_probs=35.0
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhC---CCceechh
Q psy17762 40 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN---KKTRIIPR 81 (124)
Q Consensus 40 ~~rvs~~A~v~LaavLEyl~~eIlelA~~~a~~~---~~k~I~p~ 81 (124)
..|..++|...|--+-|.++-.++|.+.-.|.|. |.++|+..
T Consensus 24 ~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~ 68 (121)
T 2ly8_A 24 DLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL 68 (121)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH
Confidence 4699999999999999999999999997777665 55677654
No 93
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=28.62 E-value=60 Score=23.33 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 60 ~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
..++..|...|...++..|+.+|++.|+..
T Consensus 228 ~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 228 KAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 345566666666777888999999999853
No 94
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=27.72 E-value=1.2e+02 Score=19.10 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhh------CchHHhhhhcCceeccCccC
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIR------NDEELNKLLSGVTIAQGGVL 108 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~------~d~eL~~L~~~~~i~~gg~~ 108 (124)
..+.+..+.+....++...|+.+++..++. .++++..+|........|.+
T Consensus 94 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i 149 (162)
T 1top_A 94 SEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRI 149 (162)
T ss_dssp HHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSB
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC
Confidence 344566666666666777899999998874 45677777765434444444
No 95
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=27.15 E-value=51 Score=20.90 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-ceechhhHHHhhhC-----------chHHhhhhcCceeccCcc
Q psy17762 55 MEYLAAEVLELAGNAARDNKK-TRIIPRHLQLAIRN-----------DEELNKLLSGVTIAQGGV 107 (124)
Q Consensus 55 LEyl~~eIlelA~~~a~~~~~-k~I~p~~i~~AI~~-----------d~eL~~L~~~~~i~~gg~ 107 (124)
||.-+.++.+.=-.++...|. -.|+...+...+.. ++|++.+++.+-.-..|.
T Consensus 5 le~~i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~ 69 (101)
T 3nso_A 5 LEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCC
Confidence 555566665544445534443 68999999988864 677888887554444443
No 96
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=26.25 E-value=98 Score=20.66 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 60 ~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
.+.++........++...|+.+++...+.+++++..++.
T Consensus 130 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~ 168 (198)
T 2r2i_A 130 EEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILT 168 (198)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCHHHHHHHh
Confidence 355666667776677778999999999999999999886
No 97
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=26.13 E-value=1.3e+02 Score=20.21 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
..+.++........++...|+.+++...+.+++++..++.
T Consensus 146 ~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~ 185 (204)
T 1jba_A 146 PEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQ 185 (204)
T ss_dssp HHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTTTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHcChHHHHHHH
Confidence 3456666677776777778999999999999999999886
No 98
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=26.03 E-value=54 Score=21.68 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhcCceeccCc
Q psy17762 62 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGG 106 (124)
Q Consensus 62 IlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~~~~i~~gg 106 (124)
.+..+......++...|+.+++...+..++++..+| .......|
T Consensus 148 ~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~-~~D~~~dG 191 (193)
T 1bjf_A 148 RTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLL-QCDPSSAG 191 (193)
T ss_dssp HHHHHHHHSCTTCSSEECHHHHHHHHHHCTHHHHTT-CC------
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHhcCHHHHHHh-ccCCCCCC
Confidence 345555555666777899999999999999999998 65444434
No 99
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=25.72 E-value=39 Score=24.84 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=36.5
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLEL 65 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIlel 65 (124)
-++|+..+-+-|++.++--++|.+|--||+-.+=|-....+..
T Consensus 115 t~Lpv~~iv~~l~~~gipa~vS~dAG~ylCN~i~Y~sL~~~~~ 157 (216)
T 4gxh_A 115 SRLPIKTMVNALNTAGIPASVSQTAGTFVCNHVMYGLLHYLAQ 157 (216)
T ss_dssp CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHCCCCEEEeCCCcccHHHHHHHHHHHHHHH
Confidence 5689999999999988888999999999998888877665543
No 100
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=24.54 E-value=1.8e+02 Score=21.46 Aligned_cols=60 Identities=22% Similarity=0.161 Sum_probs=36.8
Q ss_pred hhhhHHHhcC---C-cccccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhCCCceechhhHHHhhhC
Q psy17762 28 GRIHRLLRKG---N-YAERVGAGAPVYLAAVME------YLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (124)
Q Consensus 28 ~ri~R~lk~~---~-~~~rvs~~A~v~LaavLE------yl~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~ 89 (124)
..+..+++.. . ....++.++..+++.... ..+.++++.|+..|. +...|+.+|+..++..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHH
Confidence 4555566542 1 123566666666666554 123467777777665 5568999999988753
No 101
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=24.25 E-value=49 Score=24.51 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=36.2
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLE 64 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIle 64 (124)
-++|+..+-+-|++.++--++|.+|--|++..+=|.....+.
T Consensus 115 stLpv~~~v~~l~~~gipa~vS~dAG~yvCN~iyY~sL~~~~ 156 (223)
T 3ro0_A 115 TGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEIS 156 (223)
T ss_dssp CCSCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHCCCCEEEeCCCCcccchHHHHHHHHHHH
Confidence 468999999999998888999999999999988888776654
No 102
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=22.73 E-value=54 Score=24.04 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=35.8
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLE 64 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIle 64 (124)
-++|+..+-+-|++.++--++|.+|--|++..+=|.....+.
T Consensus 115 stLpv~~iv~~l~~~gipa~vS~dAG~yvCN~i~Y~sL~~~~ 156 (215)
T 3giu_A 115 SNLPVKAMTQSIINQGLPGALSNSAGTFVCNHTLYHLGYLQD 156 (215)
T ss_dssp CCSCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCEEEeCCCCccccHHHHHHHHHHHH
Confidence 469999999999998888899999999999888887766554
No 103
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=22.14 E-value=93 Score=22.98 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 61 EVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 61 eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
.++..|...|.-.++..|+++|+..++.
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3566777778788888899999998774
No 104
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=22.05 E-value=1.5e+02 Score=18.27 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCceechhhHHHhhhC-------chHHhhhhcCceeccCccCC
Q psy17762 61 EVLELAGNAARDNKKTRIIPRHLQLAIRN-------DEELNKLLSGVTIAQGGVLP 109 (124)
Q Consensus 61 eIlelA~~~a~~~~~k~I~p~~i~~AI~~-------d~eL~~L~~~~~i~~gg~~p 109 (124)
+-+..+......++...|+.+++..++.. ++++..+|........|.+.
T Consensus 88 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~dg~i~ 143 (153)
T 3ox6_A 88 KELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVD 143 (153)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHCSSSSSSBC
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCeEe
Confidence 44566667666667778999999887643 56777888755444555543
No 105
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=20.79 E-value=1.2e+02 Score=20.61 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHhhhCchHHhhhhc
Q psy17762 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 98 (124)
Q Consensus 60 ~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~eL~~L~~ 98 (124)
.+.++........++...|+-+++...+.+++++..+|.
T Consensus 134 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~ 172 (211)
T 2ggz_A 134 EEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLEIVY 172 (211)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHhCHHHHHHHh
Confidence 355666667776677778999999999999999988886
No 106
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=20.78 E-value=1.7e+02 Score=18.53 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCceechhhHHHhhh------CchHHhhhhcCceeccCccCC
Q psy17762 60 AEVLELAGNAARDNKKTRIIPRHLQLAIR------NDEELNKLLSGVTIAQGGVLP 109 (124)
Q Consensus 60 ~eIlelA~~~a~~~~~k~I~p~~i~~AI~------~d~eL~~L~~~~~i~~gg~~p 109 (124)
.+-+..+.+....++...|+.+++...+. .++++..+|........|.+.
T Consensus 100 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~ 155 (169)
T 3qrx_A 100 REEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEID 155 (169)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSCBC
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCEe
Confidence 34455566666666777899999988875 457788888755455555543
No 107
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=20.71 E-value=52 Score=23.92 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=36.2
Q ss_pred ccccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHH
Q psy17762 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLE 64 (124)
Q Consensus 22 gl~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIle 64 (124)
.-++|+..+-+-|++.++--.+|.+|--|++.-+=|-....++
T Consensus 112 ~ttlpi~~iv~~l~~~gi~~~vS~~AG~ylCN~i~Y~sL~~~~ 154 (208)
T 1x10_A 112 FSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSA 154 (208)
T ss_dssp ECCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHhCCCCEEEecCCCcchhhHHHHHHHHHHH
Confidence 3579999999999988888999999999998888887766554
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=20.59 E-value=78 Score=25.08 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=40.0
Q ss_pred hhhhhHHHhcCC--cccccCCChHHHHHHHH-HH---HHHHHHHHHHHHHHhCCCceechhhHHHhhh
Q psy17762 27 VGRIHRLLRKGN--YAERVGAGAPVYLAAVM-EY---LAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 27 v~ri~R~lk~~~--~~~rvs~~A~v~LaavL-Ey---l~~eIlelA~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
...+..+|+..- ....++.++..+++..- +- ....+++.|...|...++..|+++|++.++.
T Consensus 368 ~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 368 PQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 355666665421 11235666666666544 21 3445677777788888888999999999875
No 109
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=20.31 E-value=53 Score=24.40 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=35.9
Q ss_pred cccchhhhhHHHhcCCcccccCCChHHHHHHHHHHHHHHHHH
Q psy17762 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLE 64 (124)
Q Consensus 23 l~fPv~ri~R~lk~~~~~~rvs~~A~v~LaavLEyl~~eIle 64 (124)
-++|+..+-+-|++.++--+||.+|--|++..+=|.....+.
T Consensus 136 stLpvk~~v~~l~~~Gipa~vS~dAGtYvCN~iyY~sL~~~~ 177 (228)
T 4hps_A 136 SRLPIKTMVNALNTAGIPASVSQTAGTFVCNHVMYGLLHYLA 177 (228)
T ss_dssp CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHHHH
Confidence 479999999999998888999999999999888887766544
No 110
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=20.18 E-value=77 Score=22.89 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHH--HHHHH-HHHHHhCCCceechhhHHHhhh
Q psy17762 47 APVYLAAVMEYLAAE--VLELA-GNAARDNKKTRIIPRHLQLAIR 88 (124)
Q Consensus 47 A~v~LaavLEyl~~e--IlelA-~~~a~~~~~k~I~p~~i~~AI~ 88 (124)
+..=+.|+++|+... -++.+ .+.+..=| -.|||++|+.+|.
T Consensus 84 t~~Qv~AAl~yl~~~~~~id~~~Fe~~cGVG-V~VT~EqI~~~V~ 127 (187)
T 3tl4_X 84 TSLQVDAAFKYVKANGEASTKMGMNENSGVG-IEITEDQVRNYVM 127 (187)
T ss_dssp SHHHHHHHHHHHHHHGGGCCHHHHHHTTTTT-CCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHCCCC-eEeCHHHHHHHHH
Confidence 456688999999763 12222 23333323 3799999999885
No 111
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.11 E-value=62 Score=28.00 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCCceechhhHHHhhhCchH
Q psy17762 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (124)
Q Consensus 59 ~~eIlelA~~~a~~~~~k~I~p~~i~~AI~~d~e 92 (124)
+..+|+.|..+|...+...|..+||-+|+-.+.+
T Consensus 87 ~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~ 120 (854)
T 1qvr_A 87 LSGALNRAEGLMEELKDRYVAVDTLVLALAEATP 120 (854)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhccc
Confidence 4567899999999889999999999999986543
Done!