RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17762
(124 letters)
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Length = 123
Score = 164 bits (415), Expect = 5e-54
Identities = 118/123 (95%), Positives = 121/123 (98%)
Query: 2 SGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 61
SGRGKGGK K K+K+RS+RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE
Sbjct: 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 60
Query: 62 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE
Sbjct: 61 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 120
Query: 122 KKA 124
KKA
Sbjct: 121 KKA 123
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant,
chromatin, X- RAY structure, crystallography, structural
protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Length = 149
Score = 164 bits (416), Expect = 1e-53
Identities = 112/125 (89%), Positives = 118/125 (94%), Gaps = 1/125 (0%)
Query: 1 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 59
MSGRGK GGKA+AK+KTRSSRAGLQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL
Sbjct: 20 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 79
Query: 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL VTIAQGGVLPNIQAVLLPKK
Sbjct: 80 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 139
Query: 120 TEKKA 124
TE
Sbjct: 140 TESHH 144
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C
3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C
3azj_C 3azk_C 3azl_C 3azm_C ...
Length = 129
Score = 163 bits (413), Expect = 1e-53
Identities = 111/125 (88%), Positives = 118/125 (94%), Gaps = 1/125 (0%)
Query: 1 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 59
MSGRGK GGKA+AK+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119
AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL VTIAQGGVLPNIQAVLLPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 120 TEKKA 124
T+
Sbjct: 121 TDSHK 125
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone
variant, chromatin, X- RAY structure, crystallography,
structural protein/DNA complex; 2.90A {Homo sapiens}
SCOP: a.22.1.1 PDB: 1u35_C
Length = 120
Score = 156 bits (396), Expect = 5e-51
Identities = 76/121 (62%), Positives = 93/121 (76%), Gaps = 2/121 (1%)
Query: 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 60
MS RG GK K+ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL A
Sbjct: 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTA 58
Query: 61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
E+LELA NAARDNKK R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK
Sbjct: 59 EILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118
Query: 121 E 121
Sbjct: 119 G 119
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 131
Score = 148 bits (373), Expect = 2e-47
Identities = 93/124 (75%), Positives = 107/124 (86%), Gaps = 1/124 (0%)
Query: 2 SGRG-KGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 60
G+G K G A S++RS++AGL FPVGR+HRLLR+GNYA+R+G+GAPVYL AV+EYLAA
Sbjct: 2 GGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAA 61
Query: 61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
E+LELAGNAARDNKKTRIIPRHLQLAIRND+ELNKLL VTIAQGGVLPNI LLPKK+
Sbjct: 62 EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS 121
Query: 121 EKKA 124
K
Sbjct: 122 AKAT 125
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA
interaction, nucleoprotein, supercoiled DNA, complex
(nucleosome core/DNA); 2.60A {Homo sapiens} SCOP:
a.22.1.1
Length = 128
Score = 139 bits (350), Expect = 5e-44
Identities = 75/128 (58%), Positives = 91/128 (71%), Gaps = 5/128 (3%)
Query: 1 MSGRGKG---GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAER-VGAGAPVYLAAVME 56
M+G G GKAK K+ +RS RAGLQFPVGRIHR L+ + VGA A VY AA++E
Sbjct: 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE 60
Query: 57 YLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLL 116
YL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I L+
Sbjct: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI 119
Query: 117 PKKTEKKA 124
KK ++K
Sbjct: 120 GKKGQQKT 127
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone
complex, intrinsically unfolded protein,
chaperone/structural protein complex; NMR {Saccharomyces
cerevisiae} SCOP: a.22.1.1 a.22.1.1
Length = 192
Score = 104 bits (258), Expect = 2e-29
Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Query: 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAER-VGAGAPVYLAAVMEYLAAEVLELAGNAAR 71
++++ S+RAGLQFPVGRI R L++ VG+ A +YL AV+EYL AEVLELAGNAA+
Sbjct: 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAK 153
Query: 72 DNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNI 111
D K RI PRHLQLAIR D+EL+ L+ TIA GGVLP+I
Sbjct: 154 DLKVKRITPRHLQLAIRGDDELDSLI-RATIASGGVLPHI 192
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B,
tata-DNA, transcription initiation, NC2, negative
cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 98
Score = 83.0 bits (205), Expect = 3e-22
Identities = 14/77 (18%), Positives = 33/77 (42%)
Query: 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 75
++ + +FP RI ++++ +V A PV ++ +E +L+ A +
Sbjct: 3 SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNA 62
Query: 76 TRIIPRHLQLAIRNDEE 92
+ HL+ I + +
Sbjct: 63 KTMTTSHLKQCIELEGD 79
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo
sapiens} SCOP: a.22.1.3
Length = 97
Score = 52.3 bits (125), Expect = 3e-10
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83
+ P+ RI ++++ + + A APV A + E+ A DNK+ + +
Sbjct: 19 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78
Query: 84 QLAIRNDEEL 93
+AI ++
Sbjct: 79 AMAITKFDQF 88
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 55.2 bits (132), Expect = 3e-10
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 10 AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNA 69
A++ + R R L PV +IH LL++ ++ VY+ AV+EY++A++L+L GN
Sbjct: 90 AQSAIEKRKRRNPLSLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNY 148
Query: 70 ARDNKKTRIIPRHLQLAIRNDEEL 93
R+ + I + +++A+ D+ L
Sbjct: 149 VRNIRHYEITKQDIKVAMCADKVL 172
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_A
Length = 140
Score = 40.1 bits (93), Expect = 2e-05
Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 1/88 (1%)
Query: 7 GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELA 66
G R A P+ R+ +++ + + E + A
Sbjct: 2 GEPRSQPPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAA 61
Query: 67 GNAARDNKKTRII-PRHLQLAIRNDEEL 93
+ + HL + ++ L
Sbjct: 62 YTEEFGQRPGEALKYEHLSQVVNKNKNL 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.033
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72
+ K R ++ L + Y + P Y V L + L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLIC 561
Query: 73 NKKTRIIPRHLQLAIRNDEE 92
+K T + L++A+ ++E
Sbjct: 562 SKYTDL----LRIALMAEDE 577
Score = 30.6 bits (68), Expect = 0.12
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 29/87 (33%)
Query: 26 PVGRIHRLLRKGNYAERV------GAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79
P ++ + L + A+ V G+G +A +V K +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTW--------VALDVC-------LSYKVQCKM 180
Query: 80 PRH---LQLAIRNDEE-----LNKLLS 98
L L N E L KLL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLY 207
>1pzw_A Transcription factor grauzone; dimerization, transcription
regulation, treble-CLEF zinc FIN transcription; 2.00A
{Drosophila melanogaster} SCOP: g.39.1.10
Length = 80
Score = 29.5 bits (66), Expect = 0.073
Identities = 6/39 (15%), Positives = 21/39 (53%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97
A L++ + ++K ++ +H + ++E++K++
Sbjct: 13 AQMCLQIFDVDSGESKVAEVLRQHFWFEVLPNDEISKVI 51
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone
chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl
y-1140}
Length = 103
Score = 28.9 bits (64), Expect = 0.20
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 1 MSGRGKGGKAKAKSKTRSSRAGLQ-----FPVGRIHRLLRKGNYAERVGAGAPVYLAAVM 55
MSGRGKGGK K + R L+ I RL R+G +R+ + V+
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGG-VKRISGLIYEEVRNVL 59
Query: 56 EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88
+ V+ A K+ + + A++
Sbjct: 60 KTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B
3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B
3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Length = 103
Score = 27.6 bits (61), Expect = 0.65
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 1 MSGRGKGGKAKAKS----KTRSSRAGLQF-PVGRIHRLLRKGNYAERVGAGAPVYLAAVM 55
MSGRGKGGK K + R +Q I RL R+G +R+ V+
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGG-VKRISGLIYEETRGVL 59
Query: 56 EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88
+ V+ A K+ + + A++
Sbjct: 60 KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 27.7 bits (60), Expect = 0.90
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 20 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79
+ V + + R + A + L E +LE A K+ I+
Sbjct: 14 KIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIM 73
Query: 80 PRHLQLAIRNDEE 92
+ +QLA R +
Sbjct: 74 KKDMQLARRIRGQ 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.1
Identities = 30/144 (20%), Positives = 43/144 (29%), Gaps = 49/144 (34%)
Query: 9 KAKAKSKTRSSRA---------GLQF-PVG-------------RIHRLLRKGNYAERVGA 45
KAKA S SR +F PV I++ L K N +
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 46 -GAPVYL-----------AAVMEYLAAEVLELAGN--AARDNKKTRII---P----RHLQ 84
PVY ++ E + ++ L K T I+ P
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 85 LAIRNDEELNKLLSGVTIAQGGVL 108
L RN + +GV + G L
Sbjct: 515 LTHRNKD-----GTGVRVIVAGTL 533
Score = 26.2 bits (57), Expect = 3.8
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 14/108 (12%)
Query: 4 RGK--GGKAKAKSKTRSSRAGLQFPVGRIHRLLRK---GNYAERVGAGAPVYLAAV---- 54
RG RS+ + GR+ + ERVG + V
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 55 --MEYLAA---EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 97
+Y+AA L+ N K +I LQ ++ +E L
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 26.8 bits (60), Expect = 2.4
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +V+EL+ + AR + + H+ L + + E
Sbjct: 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC;
transcription, proteolysis; 1.50A {Bacillus subtilis}
PDB: 2y1r_A* 2k77_A
Length = 150
Score = 26.1 bits (58), Expect = 2.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +V+EL+ + AR + + H+ L + + E
Sbjct: 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +V+EL+ + AR + + H+ L + + E
Sbjct: 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 102
Score = 25.0 bits (54), Expect = 5.5
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 2 SGRGKGGKAKAKSKTRSSRAGLQ-----FPVGRIHRLLRKGNYAERVGAGAPVYLAAVME 56
SGRGKGGK K + R L+ I RL R+G +R+ + AV++
Sbjct: 1 SGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGG-VKRISGLIYEEVRAVLK 59
Query: 57 YLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88
V+ + K+ + + A++
Sbjct: 60 SFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 91
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural
genomics, PSI-2, protein structure initiative; 2.40A
{Acinetobacter calcoaceticus}
Length = 182
Score = 24.9 bits (55), Expect = 6.9
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 51 LAAVMEYLAAEVLELAGNAARDNKKTRIIP 80
+ + E A +V+ + + + R+IP
Sbjct: 129 IHELFETGANDVMVVRATPDSIDSEERMIP 158
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics,
PSI2, MCSG, protein structure initiative; 1.60A
{Corynebacterium glutamicum}
Length = 146
Score = 24.6 bits (54), Expect = 9.7
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +VLEL+ I L L + + E
Sbjct: 86 AKKVLELSLREGLQMGHKYIGTEFLLLGLIREGE 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.362
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,856,966
Number of extensions: 111659
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 39
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)