Query psy17763
Match_columns 136
No_of_seqs 141 out of 607
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:14:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 1.2E-62 4.1E-67 367.4 6.4 136 1-136 1-136 (136)
2 2yfv_A Histone H3-like centrom 100.0 4.9E-51 1.7E-55 291.0 5.3 96 37-132 2-100 (100)
3 3nqu_A Histone H3-like centrom 100.0 1.8E-50 6.3E-55 302.5 6.3 110 24-135 24-136 (140)
4 3r45_A Histone H3-like centrom 100.0 1.4E-50 4.8E-55 307.1 5.1 112 22-135 38-152 (156)
5 2hue_B Histone H3; mini beta s 100.0 1.2E-39 4.1E-44 222.6 6.2 77 60-136 1-77 (77)
6 3nqj_A Histone H3-like centrom 100.0 2.1E-39 7E-44 223.7 6.0 75 61-135 2-78 (82)
7 2l5a_A Histone H3-like centrom 100.0 1.8E-36 6.3E-41 242.5 6.6 76 60-135 9-87 (235)
8 2ly8_A Budding yeast chaperone 99.9 3.6E-28 1.2E-32 178.1 7.0 73 62-134 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.8 2.5E-21 8.4E-26 127.6 4.1 64 63-131 3-66 (68)
10 1ku5_A HPHA, archaeal histon; 99.7 1.1E-17 3.6E-22 111.0 4.5 64 62-130 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.6 1.5E-15 5.1E-20 105.6 4.6 74 57-133 3-76 (93)
12 1tzy_B Histone H2B; histone-fo 99.2 2.8E-11 9.7E-16 88.8 6.7 69 64-132 34-102 (126)
13 2nqb_D Histone H2B; nucleosome 99.2 2.9E-11 1E-15 88.4 6.7 69 64-132 31-99 (123)
14 1tzy_D Histone H4-VI; histone- 98.9 1.9E-09 6.4E-14 76.2 4.6 72 58-134 25-96 (103)
15 2yfw_B Histone H4, H4; cell cy 98.9 1.7E-09 5.9E-14 76.4 4.4 72 58-134 25-96 (103)
16 1id3_B Histone H4; nucleosome 98.8 2.6E-09 8.9E-14 75.6 4.9 71 59-134 25-95 (102)
17 3b0c_W CENP-W, centromere prot 98.8 3.7E-09 1.3E-13 70.8 4.1 66 62-131 4-69 (76)
18 2hue_C Histone H4; mini beta s 98.8 3.4E-09 1.2E-13 72.4 3.1 70 60-134 8-77 (84)
19 3b0c_T CENP-T, centromere prot 98.7 1.9E-08 6.7E-13 72.1 6.1 70 60-134 5-74 (111)
20 2jss_A Chimera of histone H2B. 98.7 2.8E-08 9.6E-13 77.1 7.2 69 64-132 1-69 (192)
21 1f1e_A Histone fold protein; a 98.7 1.2E-08 4E-13 77.2 4.7 69 58-131 78-146 (154)
22 1taf_A TFIID TBP associated fa 98.6 1.6E-07 5.6E-12 62.1 6.7 62 70-132 5-66 (68)
23 3v9r_A MHF1, uncharacterized p 98.6 8.8E-08 3E-12 66.6 5.3 66 65-130 11-78 (90)
24 4dra_A Centromere protein S; D 98.5 1.4E-07 4.9E-12 68.0 5.6 59 70-130 35-93 (113)
25 3b0b_B CENP-S, centromere prot 98.5 1.4E-07 4.8E-12 67.4 4.5 66 65-130 18-85 (107)
26 2r10_A Chromatin structure-rem 98.5 2.1E-08 7.3E-13 83.9 0.0 50 3-52 3-52 (361)
27 1f1e_A Histone fold protein; a 98.5 1.5E-07 5.1E-12 71.1 4.7 68 63-134 5-72 (154)
28 1taf_B TFIID TBP associated fa 98.4 2.5E-07 8.4E-12 61.6 4.6 64 63-131 7-70 (70)
29 3vh5_A CENP-S; histone fold, c 98.4 2.5E-07 8.6E-12 68.9 5.0 66 65-130 18-85 (140)
30 2byk_B Chrac-14; nucleosome sl 98.3 7.2E-07 2.5E-11 65.3 5.9 72 59-133 6-77 (128)
31 1jfi_B DR1 protein, transcript 98.3 7.5E-07 2.6E-11 68.8 5.5 73 57-133 10-82 (179)
32 4g92_C HAPE; transcription fac 98.2 1.9E-06 6.6E-11 62.1 5.5 70 60-130 36-105 (119)
33 1n1j_B NF-YC; histone-like PAI 98.2 2.8E-06 9.4E-11 59.1 5.2 81 48-130 3-83 (97)
34 1h3o_B Transcription initiatio 97.8 5.3E-05 1.8E-09 51.0 6.4 65 62-130 5-69 (76)
35 1jfi_A Transcription regulator 97.7 2.4E-05 8E-10 54.6 3.8 66 64-130 10-75 (98)
36 2nqb_C Histone H2A; nucleosome 97.4 0.00018 6E-09 52.3 5.0 67 60-130 21-87 (123)
37 2byk_A Chrac-16; nucleosome sl 97.4 0.00015 5E-09 53.8 4.5 66 64-130 18-84 (140)
38 1tzy_A Histone H2A-IV; histone 97.4 0.00021 7E-09 52.3 5.0 67 60-130 23-89 (129)
39 2f8n_G Core histone macro-H2A. 97.3 0.00021 7E-09 51.7 4.5 67 60-130 20-86 (120)
40 2x4w_B Histone H3.2; transcrip 97.3 8.4E-05 2.9E-09 39.6 1.6 23 26-48 4-26 (26)
41 2f8n_K Histone H2A type 1; nuc 97.3 0.00024 8.4E-09 53.2 4.5 67 60-130 42-108 (149)
42 1f66_C Histone H2A.Z; nucleoso 97.3 0.00018 6.2E-09 52.5 3.6 68 60-130 25-92 (128)
43 2l5a_A Histone H3-like centrom 97.2 0.00035 1.2E-08 55.8 4.7 54 81-134 175-228 (235)
44 1id3_C Histone H2A.1; nucleoso 97.0 0.00099 3.4E-08 48.8 4.8 67 60-130 23-89 (131)
45 2jss_A Chimera of histone H2B. 96.9 0.0007 2.4E-08 52.2 3.9 68 60-130 103-170 (192)
46 3avr_B Histone H3; cupin super 91.0 0.11 3.6E-06 27.3 1.6 24 19-42 2-25 (26)
47 3a1b_A DNA (cytosine-5)-methyl 90.0 0.059 2E-06 40.6 0.0 20 2-21 1-20 (159)
48 4dra_E Centromere protein X; D 68.8 15 0.00051 24.6 5.9 57 70-126 16-74 (84)
49 1r4v_A Hypothetical protein AQ 64.1 8.9 0.0003 29.0 4.4 71 55-130 17-89 (171)
50 3b0b_C CENP-X, centromere prot 64.0 20 0.00069 23.7 5.7 57 70-126 12-70 (81)
51 3uk6_A RUVB-like 2; hexameric 53.8 34 0.0012 26.5 6.4 51 81-131 275-329 (368)
52 1wwi_A Hypothetical protein TT 52.9 13 0.00045 27.4 3.6 63 63-130 3-65 (148)
53 1g8p_A Magnesium-chelatase 38 42.6 53 0.0018 25.0 5.8 51 81-131 264-321 (350)
54 3k1j_A LON protease, ATP-depen 42.0 75 0.0026 27.2 7.2 51 81-131 311-374 (604)
55 3qb5_K Translin-associated pro 39.9 53 0.0018 26.2 5.6 36 71-106 100-137 (290)
56 1h3o_A Transcription initiatio 33.6 40 0.0014 22.0 3.2 52 63-115 3-54 (75)
57 3ksy_A SOS-1, SON of sevenless 30.8 93 0.0032 28.9 6.4 48 83-130 120-167 (1049)
58 2ly8_A Budding yeast chaperone 29.7 36 0.0012 24.1 2.7 31 81-111 61-91 (121)
59 3kw6_A 26S protease regulatory 28.8 35 0.0012 21.0 2.3 32 99-130 40-71 (78)
60 1njg_A DNA polymerase III subu 23.4 59 0.002 22.4 2.9 47 81-128 201-247 (250)
61 3v9r_B MHF2, uncharacterized p 21.6 84 0.0029 21.2 3.2 46 80-129 17-73 (88)
62 2dzn_B 26S protease regulatory 21.0 60 0.0021 20.3 2.3 30 101-130 37-66 (82)
63 3axj_B TRAX, translin associat 20.9 2.2E+02 0.0074 22.7 6.1 23 83-105 111-133 (298)
64 1kn1_B Allophycocyanin; helix- 20.8 93 0.0032 22.6 3.6 58 46-103 79-143 (161)
65 3vlf_B 26S protease regulatory 20.6 58 0.002 20.8 2.2 31 100-130 39-69 (88)
66 3bos_A Putative DNA replicatio 20.4 1.5E+02 0.0053 20.6 4.7 48 81-129 190-240 (242)
67 2v1u_A Cell division control p 20.3 2.1E+02 0.0073 21.5 5.8 48 82-129 220-273 (387)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=1.2e-62 Score=367.37 Aligned_cols=136 Identities=100% Similarity=1.353 Sum_probs=93.7
Q ss_pred CCCccccccccCCCCCCccchhhhhcccCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhhhccchhHHHHHHHhhhc
Q psy17763 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
Q Consensus 1 MartK~ta~ks~g~kaprk~~~~k~~~~~~p~~~~~k~~~r~~pg~~alrEIr~~Qkst~lli~k~pF~rlVreI~~~~~ 80 (136)
||||||+|++++||++|++++++++++++.|..+++++++||+||+++|+|||+||+||+|||||+||+||||||+++|.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhcccC
Q psy17763 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~~~ 136 (136)
+++|||++||+|||||+|+|||+||||+|+||+|+||||||++|||||++|||+++
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=4.9e-51 Score=291.01 Aligned_cols=96 Identities=66% Similarity=1.011 Sum_probs=67.1
Q ss_pred CCCCcCCCCchhhHHHHhhhhhhhhhhhccchhHHHHHHHhhhcc---CccccHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q psy17763 37 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAI 113 (136)
Q Consensus 37 k~~~r~~pg~~alrEIr~~Qkst~lli~k~pF~rlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~ 113 (136)
++++||+||+++|+|||+||+||+|||||+||+||||||++++.+ ++|||++||+|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999976 89999999999999999999999999999999
Q ss_pred hcCccccCcccHHHHHHHh
Q psy17763 114 HAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 114 HakRvTi~~kDi~La~rir 132 (136)
||||||||++|||||++||
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999986
No 3
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=1.8e-50 Score=302.48 Aligned_cols=110 Identities=55% Similarity=0.842 Sum_probs=72.9
Q ss_pred hhcccCCCCCCCCCCC-CcCCCCchhhHHHHhhhhhhhhhhhccchhHHHHHHHhhhc--cCccccHHHHHHHHHHHHHH
Q psy17763 24 KAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAY 100 (136)
Q Consensus 24 k~~~~~~p~~~~~k~~-~r~~pg~~alrEIr~~Qkst~lli~k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~ 100 (136)
+++++++|.+|+++++ +||+||+ |+|||+||+||+|||||+||+||||||+++|. .++|||++||+|||||+|+|
T Consensus 24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay 101 (140)
T 3nqu_A 24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF 101 (140)
T ss_dssp -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence 5577888888877655 5899998 99999999999999999999999999999997 58999999999999999999
Q ss_pred HHHhhhhhhHhhhhcCccccCcccHHHHHHHhccc
Q psy17763 101 LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 101 Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~~ 135 (136)
||+||||+|+||+||||||||++|||||++|||+.
T Consensus 102 Lv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 102 LVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999975
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=307.15 Aligned_cols=112 Identities=54% Similarity=0.835 Sum_probs=74.1
Q ss_pred hhhhcccCCCCCCCCCCC-CcCCCCchhhHHHHhhhhhhhhhhhccchhHHHHHHHhhhc--cCccccHHHHHHHHHHHH
Q psy17763 22 ATKAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASE 98 (136)
Q Consensus 22 ~~k~~~~~~p~~~~~k~~-~r~~pg~~alrEIr~~Qkst~lli~k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE 98 (136)
+++++++++|.+|+++++ +||+||+ |+|||+||+||+|||||+||+||||||+++|. .++|||++||+|||||+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE 115 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE 115 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence 466778889988888766 7899998 99999999999999999999999999999997 589999999999999999
Q ss_pred HHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhccc
Q psy17763 99 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 99 ~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~~ 135 (136)
+|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 116 ayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 116 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999974
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=1.2e-39 Score=222.59 Aligned_cols=77 Identities=96% Similarity=1.295 Sum_probs=73.9
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhcccC
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~~~ 136 (136)
++||||+||+||||||+++|.+++|||++|++|||||+|+|||+||||+|+||+|+||||||++|||||++|||+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999863
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=223.74 Aligned_cols=75 Identities=63% Similarity=0.968 Sum_probs=71.6
Q ss_pred hhhhccchhHHHHHHHhhhc--cCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhccc
Q psy17763 61 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 61 lli~k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~~ 135 (136)
|||||+||+||||||.+++. .++|||++|++|||||+|+|||+||||+|+||+||||||||++|||||+||||++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 78999999999999999997 6899999999999999999999999999999999999999999999999999985
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=242.46 Aligned_cols=76 Identities=71% Similarity=1.053 Sum_probs=72.3
Q ss_pred hhhhhccchhHHHHHHHhhhcc---CccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhccc
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~~ 135 (136)
.+||||+||+||||||+++|.+ ++|||++||.|||||+|+|||+||||+|+||+|||||||||+|||||+||||+.
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 4999999999999999999975 899999999999999999999999999999999999999999999999999975
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-28 Score=178.11 Aligned_cols=73 Identities=59% Similarity=0.879 Sum_probs=68.5
Q ss_pred hhhccchhHHHHHHHhhhcc---CccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhc-----------------------
Q psy17763 62 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHA----------------------- 115 (136)
Q Consensus 62 li~k~pF~rlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~Ha----------------------- 115 (136)
||||+||+||||||++++.+ ++|||++||.|||||+|+|||+||||+|+||+||
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 79999999999999999987 8999999999999999999999999999999875
Q ss_pred ---------------CccccCcccHHHHHHHhcc
Q psy17763 116 ---------------KRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 116 ---------------kRvTi~~kDi~La~rirg~ 134 (136)
+|.||+..||.++.+-.|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 7889999999999988875
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.83 E-value=2.5e-21 Score=127.64 Aligned_cols=64 Identities=28% Similarity=0.356 Sum_probs=61.4
Q ss_pred hhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHH
Q psy17763 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~ri 131 (136)
||++||.|+++++ ++.+|+.+|+.+||+++|.|++.||+|||.||.|+||+||+++||++|++.
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7999999999998 579999999999999999999999999999999999999999999999764
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.69 E-value=1.1e-17 Score=111.01 Aligned_cols=64 Identities=30% Similarity=0.351 Sum_probs=60.7
Q ss_pred hhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 62 li~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
.||+.||.||+|+. +..+|+++|+++|||++|.|++.+++||+.+|.|+||.||+++||+|+.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 48999999999985 57899999999999999999999999999999999999999999999975
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.57 E-value=1.5e-15 Score=105.59 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=64.9
Q ss_pred hhhhhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhc
Q psy17763 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 57 kst~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg 133 (136)
+++++.+|++++.|+++++.. ++.+|+.+|..+||+++|.|+..|+++|+.||.|++|.||+++||..|.+=.|
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 76 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 356789999999999999854 46899999999999999999999999999999999999999999999987433
No 12
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.20 E-value=2.8e-11 Score=88.85 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=67.0
Q ss_pred hccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHh
Q psy17763 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rir 132 (136)
++..|..+|+.|+.++++|+++++.|+..|....+|++.++-.+|..++.|++|.||+++|||+|.||.
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 678899999999999999999999999999999999999999999999999999999999999999985
No 13
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.19 E-value=2.9e-11 Score=88.43 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=66.8
Q ss_pred hccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHh
Q psy17763 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rir 132 (136)
++..|..+|+.|+.++++|.+++..|+..|....+|++.++-.+|..++.|++|.||+++|||+|.||.
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999999999999999999999999985
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.86 E-value=1.9e-09 Score=76.19 Aligned_cols=72 Identities=22% Similarity=0.214 Sum_probs=63.1
Q ss_pred hhhhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q psy17763 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 58 st~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~ 134 (136)
+...-||+.+..||.+.. ..-|++.+|.+.|++..|.|+..+.+||..+|-|++|.||++.||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp CGGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hhcccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 334458999988887654 236999999999999999999999999999999999999999999999997775
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.86 E-value=1.7e-09 Score=76.43 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=60.5
Q ss_pred hhhhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q psy17763 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 58 st~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~ 134 (136)
+...-||+.+..||.+.. ..-|++.+|.+.|++..|.|+..+.+||..+|-|++|.||++.||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp -----CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred hhhccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 333448999988887653 236999999999999999999999999999999999999999999999997775
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.85 E-value=2.6e-09 Score=75.61 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=63.6
Q ss_pred hhhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q psy17763 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 59 t~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~ 134 (136)
...-||+.+..||++.. ...+++.+|.++|+++.|.|+..+.+||..++-|++|-||+..||.+|++-.|+
T Consensus 25 ~i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 25 NIQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp CGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred ccCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 33458999988888764 357999999999999999999999999999999999999999999999997775
No 17
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.80 E-value=3.7e-09 Score=70.79 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=59.8
Q ss_pred hhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHH
Q psy17763 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 62 li~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~ri 131 (136)
.+|+++..|+++++. ++.+++.+|.++|++++|.|+..|-.+|+..+.|.+|-||+++||+.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 478888888877764 478999999999999999999999999999999999999999999999875
No 18
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.76 E-value=3.4e-09 Score=72.36 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=62.3
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~ 134 (136)
..-||+.+..||.+.. ...+++.+|.++|++..|.|+..+.+||..++-|++|.||+..||.+|.+-.|+
T Consensus 8 ~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 8 IQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp CCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred CCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 3458999988887653 457999999999999999999999999999999999999999999999887664
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.72 E-value=1.9e-08 Score=72.06 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=58.8
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~ 134 (136)
++-||+..-.||+++- +..+++.+|.++|+++++.|+..+..||+..|-|++|.||+..|+.++.+=.|.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4668888777776665 568999999999999999999999999999999999999999999999887654
No 20
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.71 E-value=2.8e-08 Score=77.06 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=66.0
Q ss_pred hccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHh
Q psy17763 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rir 132 (136)
++..|..+++.|+.++++|.+++.+||..|....++++.++-.+|..++.|++|.||+++|||.+.+|-
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 367899999999999999999999999999999999999999999999999999999999999999874
No 21
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.70 E-value=1.2e-08 Score=77.19 Aligned_cols=69 Identities=19% Similarity=0.064 Sum_probs=64.1
Q ss_pred hhhhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHH
Q psy17763 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 58 st~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~ri 131 (136)
.-++.||+.|..|+.|+- +..|++.+|-++|+++.|.|+..+.++|+..|.|++|.||++.||+++.+.
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 456789999999999886 567999999999999999999999999999999999999999999999865
No 22
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.57 E-value=1.6e-07 Score=62.09 Aligned_cols=62 Identities=23% Similarity=0.428 Sum_probs=56.2
Q ss_pred HHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHh
Q psy17763 70 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 70 rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rir 132 (136)
++|..|+.+.+- -++++.+...|-|.+|.|...+..||..++-||+|.||...||+||...+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 567777776654 49999999999999999999999999999999999999999999998765
No 23
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=8.8e-08 Score=66.59 Aligned_cols=66 Identities=24% Similarity=0.185 Sum_probs=56.2
Q ss_pred ccchhHHHHHHHhhhc--cCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 65 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
|..+.--|-.|+++.. .+..++++++.+|-|.++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4445555666666653 24789999999999999999999999999999999999999999999865
No 24
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.51 E-value=1.4e-07 Score=68.02 Aligned_cols=59 Identities=31% Similarity=0.438 Sum_probs=51.0
Q ss_pred HHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 70 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 70 rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
|+|++...+ .+..++++++.+|-|+++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus 35 rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 35 CLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 444444332 35779999999999999999999999999999999999999999999965
No 25
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.46 E-value=1.4e-07 Score=67.44 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=55.0
Q ss_pred ccchhHHHHHHHhhhc--cCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 65 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
|..+.--|-.|+.+.. .+.+++++++.+|-|.++.|+..+..|+...|-||+|.||...|+.|+.|
T Consensus 18 Kaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 3344444555555443 35799999999999999999999999999999999999999999999876
No 26
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.45 E-value=2.1e-08 Score=83.86 Aligned_cols=50 Identities=42% Similarity=0.525 Sum_probs=12.5
Q ss_pred CccccccccCCCCCCccchhhhhcccCCCCCCCCCCCCcCCCCchhhHHH
Q psy17763 3 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREI 52 (136)
Q Consensus 3 rtK~ta~ks~g~kaprk~~~~k~~~~~~p~~~~~k~~~r~~pg~~alrEI 52 (136)
||||+|++++||++|++++++++++++.|.++++++++||+||++++.|-
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 79999999999999999999998888888788889999999999997665
No 27
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.45 E-value=1.5e-07 Score=71.13 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=61.1
Q ss_pred hhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q psy17763 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~ 134 (136)
+|+.|..|++|+-+ ++.|++.+|-++|+++.|.|+..+-.+|+..|.|++|.||++.|+..+..=+|.
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~ 72 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 72 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 68888888887754 459999999999999999999999999999999999999999999999866653
No 28
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.42 E-value=2.5e-07 Score=61.59 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=53.7
Q ss_pred hhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHH
Q psy17763 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~ri 131 (136)
+|..|..++. ++.+ --+.+.+|..+|-+-+|.++-.+.++|..++.|+||-||+..||.+|.++
T Consensus 7 lp~~~v~~ia----es~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 7 ISAESMKVIA----ESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp CCHHHHHHHH----HHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred CCHHHHHHHH----HHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 5566655554 4443 24899999999999999999999999999999999999999999999764
No 29
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.41 E-value=2.5e-07 Score=68.92 Aligned_cols=66 Identities=27% Similarity=0.345 Sum_probs=56.0
Q ss_pred ccchhHHHHHHHhhhc--cCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 65 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
|...+--|-.|+++.. .++.++++++.+|-++++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus 18 KaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3344445556666552 46889999999999999999999999999999999999999999999976
No 30
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.34 E-value=7.2e-07 Score=65.29 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=60.5
Q ss_pred hhhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhc
Q psy17763 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 59 t~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg 133 (136)
.++.+|.++..|++++... ...+++.+|..+|++++|.|+..|-..|+..+.|.+|-||...||..|..-.|
T Consensus 6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 3567899988888887653 46899999999999999999999999999999999999999999999876554
No 31
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.30 E-value=7.5e-07 Score=68.76 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=65.3
Q ss_pred hhhhhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhc
Q psy17763 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 57 kst~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg 133 (136)
...++.+|+++..|++++++. +.+++.+|.++|+++++.|+.-|-..||..+.|.+|.||...||..|..=.|
T Consensus 10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 455788999999999999864 6899999999999999999999999999999999999999999999876444
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.21 E-value=1.9e-06 Score=62.13 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=62.2
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
+.-.+.+|.+| |+.|++.-....+++.+|..+|..|+|.|+..|.+.|+.+|...+|.||+++||..|.+
T Consensus 36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 34457789988 68888865566799999999999999999999999999999999999999999999874
No 33
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.15 E-value=2.8e-06 Score=59.15 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=56.0
Q ss_pred hhHHHHhhhhhhhhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHH
Q psy17763 48 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127 (136)
Q Consensus 48 alrEIr~~Qkst~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~L 127 (136)
.+.||+..- ..+.--..+|-+|+ +.|++.-...-+++.+|..+|..|+|.|+..|.+.|+.+|.+.||.||+++||++
T Consensus 3 ~~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~ 80 (97)
T 1n1j_B 3 HMEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 80 (97)
T ss_dssp ------------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHH
Confidence 345666542 12233356677664 6677755444689999999999999999999999999999999999999999999
Q ss_pred HHH
Q psy17763 128 ARR 130 (136)
Q Consensus 128 a~r 130 (136)
|.+
T Consensus 81 Av~ 83 (97)
T 1n1j_B 81 AIT 83 (97)
T ss_dssp HHT
T ss_pred HHh
Confidence 865
No 34
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.81 E-value=5.3e-05 Score=50.99 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=58.1
Q ss_pred hhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 62 li~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
+++|.-.+.||++| .+...+.+++-++|.+.|++|+.+..+.|..+|.|.+--||.++|+||...
T Consensus 5 vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 5 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 45676777777777 467899999999999999999999999999999999999999999999864
No 35
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.73 E-value=2.4e-05 Score=54.57 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=52.9
Q ss_pred hccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
..+|.+|+ +.|++.-...-+++.+|...|-.+.|.|+..|.+.|+.+|.+.+|-||+++||+++.+
T Consensus 10 ~~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 10 ARFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred CCCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 34566664 6666654444699999999999999999999999999999999999999999998754
No 36
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.42 E-value=0.00018 Score=52.28 Aligned_cols=67 Identities=25% Similarity=0.255 Sum_probs=58.8
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
+|.+|-.+|.|+.++- ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 4778888888887652 223499999999999999999999999999999999999999999999976
No 37
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.41 E-value=0.00015 Score=53.77 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=50.3
Q ss_pred hccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhh-hhcCccccCcccHHHHHH
Q psy17763 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a-~HakRvTi~~kDi~La~r 130 (136)
..+|.+|+ +.|++.-...-.++.+|..++..|+|-|+..|.+.|+.+| ...+|-||+.+||..|..
T Consensus 18 ~~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 18 TFLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 45666664 7777755445689999999999999999999999999999 999999999999999875
No 38
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.39 E-value=0.00021 Score=52.34 Aligned_cols=67 Identities=25% Similarity=0.252 Sum_probs=58.9
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
+|.+|-.++.|+.++- ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4778888888887652 223499999999999999999999999999999999999999999999976
No 39
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.34 E-value=0.00021 Score=51.71 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=59.4
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
.|.+|-.++.|+.++- ....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus 20 gLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4778888888888763 223599999999999999999999999999999999999999999999976
No 40
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=97.31 E-value=8.4e-05 Score=39.59 Aligned_cols=23 Identities=74% Similarity=1.066 Sum_probs=18.1
Q ss_pred cccCCCCCCCCCCCCcCCCCchh
Q psy17763 26 ARKSAPATGGVKKPHRYRPGTVA 48 (136)
Q Consensus 26 ~~~~~p~~~~~k~~~r~~pg~~a 48 (136)
++++.|..++.++++||+||++|
T Consensus 4 ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 4 ARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred cccCCCCCCccccccccccccCC
Confidence 34556667778889999999985
No 41
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.28 E-value=0.00024 Score=53.22 Aligned_cols=67 Identities=25% Similarity=0.256 Sum_probs=58.7
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
.|.+|-.+|.|+.++- ....|+..+|-..|-..-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 42 gLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 5778888888887552 223499999999999999999999999999999999999999999999976
No 42
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.27 E-value=0.00018 Score=52.55 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=58.6
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
+|.+|-.++.|+.++-. ....|+..+|-..|-..-|.+...++|.|...|.|.++.+|+|+||+||.+
T Consensus 25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 47788888888876521 123589999999999999999999999999999999999999999999976
No 43
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00035 Score=55.85 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=50.7
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q psy17763 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~rirg~ 134 (136)
+--|++.++.+.+-++.|.||..+..||...|-||+|.||++.|+.+|.+-.|.
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 456999999999999999999999999999999999999999999999987764
No 44
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.95 E-value=0.00099 Score=48.79 Aligned_cols=67 Identities=27% Similarity=0.263 Sum_probs=58.0
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
+|.+|-.++.|+.++ -....|+..+|-..|-.+-|.+...++|.|...|.|+++.+|+|+||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~----~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRR----GNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHT----TCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHc----cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 467788888887654 2233499999999999999999999999999999999999999999999976
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.91 E-value=0.0007 Score=52.18 Aligned_cols=68 Identities=25% Similarity=0.216 Sum_probs=58.8
Q ss_pred hhhhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~lli~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
+|.+|-.++.|+.++-. ....|+..+|-..|=..-|.+...++|.|...|.|+++.+|+|+||++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 57788888888876521 123689999999999999999999999999999999999999999999976
No 46
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=91.00 E-value=0.11 Score=27.27 Aligned_cols=24 Identities=83% Similarity=1.020 Sum_probs=17.3
Q ss_pred cchhhhhcccCCCCCCCCCCCCcC
Q psy17763 19 KQLATKAARKSAPATGGVKKPHRY 42 (136)
Q Consensus 19 k~~~~k~~~~~~p~~~~~k~~~r~ 42 (136)
++++++++++++|..++++++||.
T Consensus 2 K~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 2 KQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred cccccccccCCCCCCccccccCCC
Confidence 566677777777777787777763
No 47
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=89.98 E-value=0.059 Score=40.64 Aligned_cols=20 Identities=100% Similarity=1.232 Sum_probs=12.1
Q ss_pred CCccccccccCCCCCCccch
Q psy17763 2 ARTKQTARKSTGGKAPRKQL 21 (136)
Q Consensus 2 artK~ta~ks~g~kaprk~~ 21 (136)
|||+++|+|++|+|++.+++
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~ 20 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQL 20 (159)
T ss_dssp CEEEECCCC-------CHHH
T ss_pred CccccccccccCCCcchHHH
Confidence 79999999999999999887
No 48
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=68.80 E-value=15 Score=24.59 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=39.4
Q ss_pred HHHHHHHhhh--ccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHH
Q psy17763 70 RLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126 (136)
Q Consensus 70 rlVreI~~~~--~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~ 126 (136)
.+|.+|++.. +..++++.+|+.++.+-.+-|...-+.-|..-+---.-.+|.+.|++
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LE 74 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLE 74 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 4566666643 36899999999999998888877666655554433335567777765
No 49
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=64.08 E-value=8.9 Score=29.04 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=56.6
Q ss_pred hhhhhhh--hhhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 55 YQKSTEL--LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 55 ~Qkst~l--li~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
|.+-.+. +|+-.-|.++.|+-+ ++-...+-+.-+-+.+|.-|..||+-|+.-|-..+|-.|.+.|+-+-..
T Consensus 17 ~~~~~~Mm~vmg~~kferlFR~aa-----gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKG 89 (171)
T 1r4v_A 17 YSKIETMLRPKGFDKLDHYFRTEL-----DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKA 89 (171)
T ss_dssp ----CCTTSCTTHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHh-----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 3343344 778888999988875 3666788888999999999999999999999999999999999755443
No 50
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=64.03 E-value=20 Score=23.67 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHHHHhhh--ccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHH
Q psy17763 70 RLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126 (136)
Q Consensus 70 rlVreI~~~~--~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~ 126 (136)
.|+..|.+.. ....+++.+|+.++.+--+-|.+.-+.-|..-+---.-..|.+.|++
T Consensus 12 ~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LE 70 (81)
T 3b0b_C 12 ETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVE 70 (81)
T ss_dssp HHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHH
Confidence 4555565553 25789999999999988888877766665555433344466777665
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=53.84 E-value=34 Score=26.47 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=44.0
Q ss_pred cCccccHHHHHHHHHHHH----HHHHHhhhhhhHhhhhcCccccCcccHHHHHHH
Q psy17763 81 TDLRFQSSAVMALQEASE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE----~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~ri 131 (136)
.+..|+.+++..|-+.++ .++..+++.+...|...++.+|+..|++-+...
T Consensus 275 ~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 275 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 457799999999998887 478899999999988889999999999887765
No 52
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=52.94 E-value=13 Score=27.45 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=50.4
Q ss_pred hhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
|+-.-|.++.|+-+. +-...+-+.-+-+.+|.-|..||+-|+.-|...+|-.|.+.|+-+-..
T Consensus 3 m~~~~~e~lFR~aa~-----LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkG 65 (148)
T 1wwi_A 3 MKVAEFERLFRQAAG-----LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKG 65 (148)
T ss_dssp SCHHHHHHHHHHHHC-----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHH
T ss_pred CCHHHHHHHHHHHhc-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 344457788777653 555567777888999999999999999999999999999999754433
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.56 E-value=53 Score=25.02 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=41.9
Q ss_pred cCccccHHHHHHHHHHHHH-------HHHHhhhhhhHhhhhcCccccCcccHHHHHHH
Q psy17763 81 TDLRFQSSAVMALQEASEA-------YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~-------~Lv~lfe~a~l~a~HakRvTi~~kDi~La~ri 131 (136)
.++.|+.+++..|.+.+.. .+..+.+.|...|.-.++-+|+..|+.-+..+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4568999999999888764 57788888888888888889999999877654
No 54
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=41.98 E-value=75 Score=27.18 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=41.8
Q ss_pred cCccccHHHHHHHHHHH-------------HHHHHHhhhhhhHhhhhcCccccCcccHHHHHHH
Q psy17763 81 TDLRFQSSAVMALQEAS-------------EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaa-------------E~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~ri 131 (136)
....|+.+|+..|.+.+ ...|.++.+.|...|....+-.|+..|++-|...
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 34689999999988754 5678889999988888888889999999888754
No 55
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=39.87 E-value=53 Score=26.20 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=22.9
Q ss_pred HHHHHHhhhc--cCccccHHHHHHHHHHHHHHHHHhhh
Q psy17763 71 LVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFE 106 (136)
Q Consensus 71 lVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe 106 (136)
++.+|+..+. ..++|...--.+|||.+|++.-.-|=
T Consensus 100 ~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL 137 (290)
T 3qb5_K 100 KIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFI 137 (290)
T ss_dssp HHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444432 34778765557999999988665543
No 56
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=33.59 E-value=40 Score=22.05 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=38.2
Q ss_pred hhccchhHHHHHHHhhhccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhc
Q psy17763 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHA 115 (136)
Q Consensus 63 i~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~Ha 115 (136)
+...|.++=+.||+..++ ---+.+++...+--|+|..|-+|+|.-...|-|.
T Consensus 3 L~~~~Lqkri~~I~~k~g-l~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 3 LLQAPLQRRILEIGKKHG-ITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp SCHHHHHHHHHHHHHTTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccHHHHHHHHHHHHhcC-CCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677888889988653 2357889999999999999999999877776663
No 57
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=30.78 E-value=93 Score=28.87 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=42.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 83 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 83 ~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
.|+.+.|-.-|--.-|.....++|-|.-.+...++..|+|+|+++|.+
T Consensus 120 ~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 120 YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 488888887787788888889999999999999999999999999874
No 58
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=29.68 E-value=36 Score=24.13 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=27.6
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhhhhhHh
Q psy17763 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLC 111 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~ 111 (136)
+--|++.++.+.+.++.|.||..+..||...
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav~y 91 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTY 91 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999998654
No 59
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=28.80 E-value=35 Score=21.04 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=24.9
Q ss_pred HHHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 99 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 99 ~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
+-|..+..+|.+.++...+..|+..|+.-|..
T Consensus 40 ADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 40 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 33667777777888888889999999987754
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=23.38 E-value=59 Score=22.44 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=29.0
Q ss_pred cCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCccccCcccHHHH
Q psy17763 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~kDi~La 128 (136)
....++.+++..|.+.++-..-.+..-+..+...+.. +|+..|++-+
T Consensus 201 ~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~ 247 (250)
T 1njg_A 201 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAM 247 (250)
T ss_dssp TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHH
Confidence 3567888888888888764433333333333444443 7888887654
No 61
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=21.58 E-value=84 Score=21.18 Aligned_cols=46 Identities=11% Similarity=0.325 Sum_probs=28.2
Q ss_pred ccCccccHHHHHHHHHHHHHHHHHhhhhhhHhhhhcCc-----------cccCcccHHHHH
Q psy17763 80 KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR-----------VTIMPKDIQLAR 129 (136)
Q Consensus 80 ~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakR-----------vTi~~kDi~La~ 129 (136)
..++|++.+|+.++++-.+-| -.+|..=+++.|. ..|...|+.=+.
T Consensus 17 ~~kTrIt~da~~lv~kY~diF----VrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 17 GNDMKIADEVVPMIQKYLDIF----IDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp SSCCEECTTTHHHHHHHHHHH----HHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCCceecHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 478999999998877654444 3444444455444 366777766433
No 62
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=20.98 E-value=60 Score=20.26 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 101 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 101 Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
|..+..+|.+.++...+..|+..|+.-+..
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 344455566666666777889999876653
No 63
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=20.92 E-value=2.2e+02 Score=22.68 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=16.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHhh
Q psy17763 83 LRFQSSAVMALQEASEAYLVGLF 105 (136)
Q Consensus 83 ~r~~~~Al~aLQeaaE~~Lv~lf 105 (136)
++|...-=.+|||.+|++.-.-|
T Consensus 111 y~y~~~~s~~lQE~VEA~~f~~y 133 (298)
T 3axj_B 111 YQFRSSYSPGLQEFIQAYTYMEY 133 (298)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 56754444899999998776655
No 64
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=20.82 E-value=93 Score=22.56 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=38.2
Q ss_pred chhhHHHHhhhhhh--hhhhhccchhH-----HHHHHHhhhccCccccHHHHHHHHHHHHHHHHH
Q psy17763 46 TVALREIRRYQKST--ELLIRKLPFQR-----LVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 103 (136)
Q Consensus 46 ~~alrEIr~~Qkst--~lli~k~pF~r-----lVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~ 103 (136)
..++|.+..|=+-. .++.--..+-+ =++||...+..+.-+...+|..|++++..+|..
T Consensus 79 ~~ClRD~~~~LR~itYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~~~~~mk~~~~~~l~~ 143 (161)
T 1kn1_B 79 AACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIGATIQAIQAMKEVTSGLVGP 143 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTHHHHHHTSTTHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCH
Confidence 35677777765432 22222222222 247888877778888899999999998877755
No 65
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=20.60 E-value=58 Score=20.78 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHHHhhhhhhHhhhhcCccccCcccHHHHHH
Q psy17763 100 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 100 ~Lv~lfe~a~l~a~HakRvTi~~kDi~La~r 130 (136)
=|..|..+|.+.|++..+..|+..|+.-|..
T Consensus 39 Dl~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 39 ELRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 3666777777788888888999999987764
No 66
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=20.42 E-value=1.5e+02 Score=20.58 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=32.9
Q ss_pred cCccccHHHHHHHHHHHH---HHHHHhhhhhhHhhhhcCccccCcccHHHHH
Q psy17763 81 TDLRFQSSAVMALQEASE---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE---~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~ 129 (136)
.++.++.++++.|.+.++ ..|..+++.+...+...++ +|+..|+.-+.
T Consensus 190 ~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l 240 (242)
T 3bos_A 190 RGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEML 240 (242)
T ss_dssp TTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHh
Confidence 356789999998888777 4556666666655544443 58888877654
No 67
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=20.30 E-value=2.1e+02 Score=21.54 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=34.8
Q ss_pred CccccHHHHHHHHHHHH------HHHHHhhhhhhHhhhhcCccccCcccHHHHH
Q psy17763 82 DLRFQSSAVMALQEASE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 82 ~~r~~~~Al~aLQeaaE------~~Lv~lfe~a~l~a~HakRvTi~~kDi~La~ 129 (136)
+..|+.+++..+.+.+. -++..+++.+...+...+.-+|+..|+.-+.
T Consensus 220 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~ 273 (387)
T 2v1u_A 220 PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSAR 273 (387)
T ss_dssp TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 46788888888888887 4566777777766666566778888876554
Done!