RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17763
(136 letters)
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A
3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A*
1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Length = 136
Score = 149 bits (377), Expect = 9e-48
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding
prote; 1.70A {Xenopus laevis}
Length = 77
Score = 127 bits (320), Expect = 9e-40
Identities = 74/76 (97%), Positives = 74/76 (97%)
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTI
Sbjct: 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTI 61
Query: 121 MPKDIQLARRIRGERA 136
MPKDIQLARRIRGERA
Sbjct: 62 MPKDIQLARRIRGERA 77
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore,
centromere, histone chaperone, BUDD; 2.32A
{Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Length = 100
Score = 123 bits (309), Expect = 6e-38
Identities = 63/99 (63%), Positives = 79/99 (79%), Gaps = 3/99 (3%)
Query: 37 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMAL 93
+ RY+P +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+MAL
Sbjct: 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMAL 61
Query: 94 QEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
QEASEAYLVGL E TNL A+HAKR+TIM KD+QLARRIR
Sbjct: 62 QEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIR 100
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold,
centromere, DNA binding protein; 2.50A {Homo sapiens}
PDB: 3an2_A
Length = 140
Score = 120 bits (301), Expect = 3e-36
Identities = 65/135 (48%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 8 ARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63
R+S +APR++ T + P+ G H R L+EIR+ QKST LLI
Sbjct: 4 RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQH-SRRRQGWLKEIRKLQKSTHLLI 62
Query: 64 RKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RVT+
Sbjct: 63 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
Query: 122 PKDIQLARRIRGERA 136
PKD+QLARRIRG
Sbjct: 123 PKDVQLARRIRGLEE 137
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere,
CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Length = 156
Score = 114 bits (286), Expect = 9e-34
Identities = 65/142 (45%), Positives = 83/142 (58%), Gaps = 7/142 (4%)
Query: 1 MARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ 56
+ R+S +APR++ T + P+ G H R L+EIR+ Q
Sbjct: 13 DPNSMGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHS-RRRQGWLKEIRKLQ 71
Query: 57 KSTELLIRKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 114
KST LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +H
Sbjct: 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLH 131
Query: 115 AKRVTIMPKDIQLARRIRGERA 136
A RVT+ PKD+QLARRIRG
Sbjct: 132 AGRVTLFPKDVQLARRIRGLEE 153
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold,
centromere, DNA binding protein; 2.10A {Homo sapiens}
Length = 82
Score = 109 bits (274), Expect = 1e-32
Identities = 47/77 (61%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 61 LLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 118
LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA RV
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 119 TIMPKDIQLARRIRGER 135
T+ PKD+QLARRIRG
Sbjct: 62 TLFPKDVQLARRIRGLE 78
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 102 bits (254), Expect = 4e-28
Identities = 54/88 (61%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Query: 52 IRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDT 108
+ + +LLI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E T
Sbjct: 1 MHHHHHHKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHT 60
Query: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
NL A+HAKR+TIM KD+QLARRIRG+
Sbjct: 61 NLLALHAKRITIMKKDMQLARRIRGQFL 88
Score = 44.2 bits (103), Expect = 2e-06
Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 2/133 (1%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
+ RK + + + TG + + + + A + +
Sbjct: 97 HKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYT 156
Query: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
++R + E D R ++ +++L + D+ HAKR T+
Sbjct: 157 SVLRD--IIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTV 214
Query: 121 MPKDIQLARRIRG 133
D+ A + +G
Sbjct: 215 TSLDVVYALKRQG 227
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger,
chromatin regulator, transcription regulation; HET:
M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Length = 26
Score = 39.9 bits (92), Expect = 6e-06
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 23 TKAARKSAPATGGVKKPHRYR 43
TKAARKSAPATGGV KPHRYR
Sbjct: 1 TKAARKSAPATGGVXKPHRYR 21
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase,
oxidoredu structural protein complex; HET: M3L OGA EDO;
1.80A {Homo sapiens}
Length = 26
Score = 35.6 bits (81), Expect = 2e-04
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 18 RKQLATKAARKSAPATGGVKKP 39
RKQLATKAAR SAPATGGVKKP
Sbjct: 1 RKQLATKAARXSAPATGGVKKP 22
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
{Pyrococcus horikoshii} SCOP: a.22.1.2
Length = 70
Score = 33.9 bits (78), Expect = 0.002
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 84 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130
R A L E E Y + + + A HA R T+ +DI+LA +
Sbjct: 23 RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair,
histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB:
4drb_A
Length = 113
Score = 34.3 bits (78), Expect = 0.003
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 69 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
L E+A D + +F + A+ E + +D + A HAKR TI +D++L
Sbjct: 34 GCLCEEVALDKEM--QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLL 91
Query: 129 RR 130
R
Sbjct: 92 AR 93
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus
fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A
1bfm_A
Length = 68
Score = 33.4 bits (77), Expect = 0.003
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 84 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
R A +AL + E + + A HA R TI +DI+LA
Sbjct: 19 RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 63
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi
anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces
cerevisiae}
Length = 90
Score = 33.0 bits (75), Expect = 0.006
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 70 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129
++++ D+++ + +L E + L + D A HA R + D+ L
Sbjct: 20 ERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYL 77
Query: 130 R 130
R
Sbjct: 78 R 78
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone
fold, complex (TWO transcr factors); 2.00A {Drosophila
melanogaster} SCOP: a.22.1.3
Length = 68
Score = 32.5 bits (74), Expect = 0.007
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 70 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
+++ I ++ ++ V L E + Y+ + +D + A HA++ TI D++LA
Sbjct: 5 QVIMSILKELNVQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLA 62
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA,
nucleus, DNA binding protein; 2.15A {Gallus gallus}
Length = 107
Score = 32.7 bits (74), Expect = 0.010
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 70 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129
L +++A+D F V A+ E + D + A HAKR TI +D++L
Sbjct: 27 CLCQDVAEDKGV--LFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLA 84
Query: 130 R 130
R
Sbjct: 85 R 85
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA
binding protein; HET: CIT; 2.20A {Gallus gallus} PDB:
3b0d_T* 3vh5_T 3vh6_T
Length = 111
Score = 31.9 bits (72), Expect = 0.024
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 72 VREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA-RR 130
+++I + A +++ SE Y + D + HA R T+ D++L RR
Sbjct: 13 IKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71
Query: 131 IR 132
Sbjct: 72 QG 73
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus,
binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Length = 140
Score = 30.9 bits (69), Expect = 0.070
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 69 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
L +++A+D + F V A+ E + D + A HAKR TI +D++L
Sbjct: 26 GALAQDVAEDK--GVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLL 83
Query: 129 RR 130
R
Sbjct: 84 AR 85
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens}
SCOP: a.22.1.3
Length = 93
Score = 30.2 bits (68), Expect = 0.080
Identities = 13/65 (20%), Positives = 23/65 (35%)
Query: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123
LP + R + + A +QE ++ + + + KR TI +
Sbjct: 7 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 66
Query: 124 DIQLA 128
DI A
Sbjct: 67 DILFA 71
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding
prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B
1aoi_B 3kwq_B* 1hio_D 2yfv_B
Length = 84
Score = 28.6 bits (64), Expect = 0.25
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 84 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
R + + +L + D HAKR T+ D+ A + +G
Sbjct: 27 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 76
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B
3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B
3azf_B 3afa_B 3azh_B 3azk_B ...
Length = 103
Score = 28.4 bits (63), Expect = 0.33
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 53 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA 112
R+ + I K +RL R R + + +L + D
Sbjct: 20 RKVLRDNIQGITKPAIRRLARRGGVK-----RISGLIYEETRGVLKVFLENVIRDAVTYT 74
Query: 113 IHAKRVTIMPKDIQLARRIRG 133
HAKR T+ D+ A + +G
Sbjct: 75 EHAKRKTVTAMDVVYALKRQG 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.50
Identities = 3/77 (3%), Positives = 18/77 (23%), Gaps = 14/77 (18%)
Query: 55 YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 114
+ E + ++ ++ F + + + + +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD---------VQDMPKSILSKEEI---- 51
Query: 115 AKRVTIMPKDIQLARRI 131
+ + + R+
Sbjct: 52 -DHIIMSKDAVSGTLRL 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.64
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 13/31 (41%)
Query: 5 KQTARKSTGG-K--APRKQLATKAARKSAPA 32
KQ +K K A SAPA
Sbjct: 19 KQALKKLQASLKLYAD----------DSAPA 39
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo
sapiens} PDB: 3a1a_A*
Length = 159
Score = 27.8 bits (61), Expect = 1.0
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARK 28
ARTKQTARKSTGGKAPRKQL + +
Sbjct: 1 ARTKQTARKSTGGKAPRKQLRERLVYE 27
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone
chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl
y-1140}
Length = 103
Score = 26.5 bits (58), Expect = 1.9
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 45 GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 104
G + R+ + I K +RL R R ++ + +L +
Sbjct: 12 GKGGAKRHRKILRDNIQGITKPAIRRLARRGGVK-----RISGLIYEEVRNVLKTFLESV 66
Query: 105 FEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
D HAKR T+ D+ A + +G
Sbjct: 67 IRDAVTYTEHAKRKTVTSLDVVYALKRQG 95
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_B
Length = 128
Score = 26.1 bits (57), Expect = 2.9
Identities = 13/65 (20%), Positives = 21/65 (32%)
Query: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123
LP + R I + A A+ A+ + + + + A TI K
Sbjct: 8 LNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAK 67
Query: 124 DIQLA 128
DI
Sbjct: 68 DILQT 72
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
H2A/H2B, tata-DNA, transcription initiation, NC2,
negative cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 179
Score = 25.5 bits (55), Expect = 5.0
Identities = 8/65 (12%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123
+P + + + ++ ++R + A + ++ + + N +++ TI P+
Sbjct: 14 LTIPRAAINK-MIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPE 72
Query: 124 DIQLA 128
+ A
Sbjct: 73 HVIQA 77
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2,
protein structure initiative; 1.70A {Bacteroides
thetaiotaomicron}
Length = 240
Score = 25.8 bits (57), Expect = 5.0
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 40 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS----AVMALQE 95
Y G V E+ R + L + + L ++DF + +S A L+
Sbjct: 59 LEYGEGKVTKEELNRQRFFYPLQAVGVEDEALAERFSEDFFAIIPTKSGLMPHAKEVLEY 118
Query: 96 ASEAYLVGLFEDTN 109
+ Y + + +N
Sbjct: 119 LAPQYNLYIL--SN 130
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 102
Score = 25.0 bits (54), Expect = 5.4
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 53 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA 112
R+ + I K +RL R R ++ +++L + D+
Sbjct: 19 RKILRDNIQGITKPAIRRLARRGGVK-----RISGLIYEEVRAVLKSFLESVIRDSVTYT 73
Query: 113 IHAKRVTIMPKDIQLARRIRG 133
HAKR T+ D+ A + +G
Sbjct: 74 EHAKRKTVTSLDVVYALKRQG 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.131 0.361
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,008,897
Number of extensions: 111807
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 38
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)