RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17763
(136 letters)
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 168 bits (428), Expect = 2e-56
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 42 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 101
YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 60
Query: 102 VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 61 VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 95
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 50.9 bits (122), Expect = 1e-09
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 40 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 99
+ + + + L + +R+++ R S AV +
Sbjct: 57 EEHLKALADVLMVEGVEDYDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICR 111
Query: 100 YLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
L E A R T+ +D++ A
Sbjct: 112 ATEELGEKAAEYADEDGRKTVQGEDVEKA 140
Score = 30.1 bits (68), Expect = 0.044
Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
+R+ R+ + R A + + + + + T+M + ++
Sbjct: 6 AIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 127 LARRIRGER 135
+
Sbjct: 62 ALADVLMVE 70
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 36.7 bits (85), Expect = 6e-05
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 66 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 125
LP + R I + R A L E E Y + + + A HA R T+ +DI
Sbjct: 3 LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60
Query: 126 QLA 128
+LA
Sbjct: 61 KLA 63
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 37.8 bits (88), Expect = 1e-04
Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 48 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED 107
A I + ++ L + L++E+ + + + E + +
Sbjct: 85 AQSAIEKRKRRNPLSLPVEKIHPLLKEVLGY-----KIDHQVSVYIVAVLEYISADILKL 139
Query: 108 TNLCAIHAKRVTIMPKDIQLARR 130
+ + I +DI++A
Sbjct: 140 AGNYVRNIRHYEITKQDIKVAMC 162
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 34.3 bits (79), Expect = 5e-04
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 84 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
R A +AL + E + + A HA R TI +DI+LA
Sbjct: 20 RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 64
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 34.0 bits (78), Expect = 8e-04
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 66 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 125
LP + R + + A +QE ++ + + + KR TI +DI
Sbjct: 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62
Query: 126 QLA 128
A
Sbjct: 63 LFA 65
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 32.2 bits (73), Expect = 0.008
Identities = 8/63 (12%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 66 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 125
+P + ++ ++ ++R + A + ++ + + N +++ TI P+ +
Sbjct: 5 IPRAA-INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 63
Query: 126 QLA 128
A
Sbjct: 64 IQA 66
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 30.5 bits (69), Expect = 0.016
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 84 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134
R + + +L + D HAKR T+ D+ A + +G
Sbjct: 26 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 76
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 68
Score = 28.9 bits (65), Expect = 0.044
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 70 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
+++ I ++ ++ V L E + Y+ + +D + A HA++ TI D++LA
Sbjct: 5 QVIMSILKELNVQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLA 62
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 28.6 bits (64), Expect = 0.080
Identities = 12/62 (19%), Positives = 20/62 (32%)
Query: 67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
P + R I + A A+ A+ + + + + A TI KDI
Sbjct: 1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDIL 60
Query: 127 LA 128
Sbjct: 61 QT 62
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 28.2 bits (63), Expect = 0.10
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124
+ P R +++I Q + + ++ + + A E +L L + T+
Sbjct: 2 RFPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSH 60
Query: 125 IQLA 128
++
Sbjct: 61 LKQC 64
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 70
Score = 22.7 bits (49), Expect = 8.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 89 AVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131
A L E L + +D HAKR + +DI ++ ++
Sbjct: 28 AAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.131 0.361
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 463,135
Number of extensions: 19322
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 15
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)