Query psy17765
Match_columns 475
No_of_seqs 364 out of 1023
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:17:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jss_A Chimera of histone H2B. 100.0 2.3E-63 7.7E-68 470.6 19.1 191 32-231 1-192 (192)
2 3ksy_A SOS-1, SON of sevenless 100.0 1.1E-44 3.9E-49 412.6 14.9 266 28-357 15-301 (1049)
3 2nqb_C Histone H2A; nucleosome 100.0 3.6E-40 1.2E-44 292.3 8.8 117 124-240 3-119 (123)
4 2f8n_G Core histone macro-H2A. 100.0 4.4E-40 1.5E-44 290.6 8.7 115 126-240 4-118 (120)
5 2nqb_D Histone H2B; nucleosome 100.0 7.4E-40 2.5E-44 288.1 8.9 120 4-123 1-122 (123)
6 1id3_C Histone H2A.1; nucleoso 100.0 2.4E-39 8.2E-44 289.8 11.2 115 126-240 7-121 (131)
7 1tzy_A Histone H2A-IV; histone 100.0 2.7E-39 9.1E-44 288.8 8.9 114 127-240 8-121 (129)
8 1tzy_B Histone H2B; histone-fo 100.0 3.7E-39 1.3E-43 284.7 8.6 101 23-123 25-125 (126)
9 2f8n_K Histone H2A type 1; nuc 100.0 1.5E-38 5.1E-43 289.6 8.9 113 128-240 28-140 (149)
10 1f66_C Histone H2A.Z; nucleoso 100.0 3.1E-38 1.1E-42 281.6 8.8 112 128-240 11-123 (128)
11 1tzy_B Histone H2B; histone-fo 100.0 2.2E-35 7.4E-40 260.7 0.9 77 377-453 25-102 (126)
12 2nqb_D Histone H2B; nucleosome 100.0 2.7E-35 9.1E-40 259.2 1.1 92 362-453 7-99 (123)
13 2jss_A Chimera of histone H2B. 99.9 7.8E-23 2.7E-27 193.4 2.7 68 386-453 1-69 (192)
14 1jfi_A Transcription regulator 99.7 4.2E-18 1.4E-22 145.3 6.4 82 137-218 4-85 (98)
15 1f1e_A Histone fold protein; a 99.6 5.7E-15 2E-19 135.4 13.7 140 38-210 8-147 (154)
16 1n1j_B NF-YC; histone-like PAI 99.5 5.2E-14 1.8E-18 119.7 8.6 78 141-218 16-93 (97)
17 4g92_C HAPE; transcription fac 99.4 1.3E-13 4.4E-18 121.4 8.1 76 142-217 39-114 (119)
18 2byk_A Chrac-16; nucleosome sl 99.3 2.3E-12 7.9E-17 116.4 5.5 84 134-217 9-93 (140)
19 1tzy_D Histone H4-VI; histone- 99.1 8.8E-11 3E-15 100.8 8.0 78 131-211 18-95 (103)
20 2yfw_B Histone H4, H4; cell cy 99.1 1.3E-10 4.5E-15 99.7 7.5 79 131-212 18-96 (103)
21 3b0c_W CENP-W, centromere prot 99.1 9.8E-11 3.4E-15 95.2 6.1 66 37-102 7-72 (76)
22 3b0c_W CENP-W, centromere prot 99.0 2.3E-11 7.8E-16 99.0 0.5 61 392-452 8-69 (76)
23 1f1e_A Histone fold protein; a 98.4 4.9E-07 1.7E-11 82.9 8.5 64 144-207 4-67 (154)
24 1b67_A Protein (histone HMFA); 98.2 2E-06 6.8E-11 67.9 6.9 65 144-209 2-66 (68)
25 1ku5_A HPHA, archaeal histon; 98.2 2E-06 6.9E-11 68.5 6.8 66 143-209 5-70 (70)
26 1b67_A Protein (histone HMFA); 98.2 2.2E-06 7.7E-11 67.6 5.7 62 38-100 6-67 (68)
27 1tzy_D Histone H4-VI; histone- 97.7 5E-05 1.7E-09 65.0 6.7 66 34-100 29-94 (103)
28 2yfw_B Histone H4, H4; cell cy 97.7 5.2E-05 1.8E-09 64.9 6.3 64 36-100 31-94 (103)
29 1id3_B Histone H4; nucleosome 97.6 0.0002 6.8E-09 61.3 7.9 72 136-210 22-93 (102)
30 1n1j_A NF-YB; histone-like PAI 97.5 0.0002 6.8E-09 59.9 7.1 67 142-208 6-73 (93)
31 1id3_B Histone H4; nucleosome 97.3 0.00044 1.5E-08 59.2 6.5 64 36-100 30-93 (102)
32 1dbh_A Protein (human SOS 1); 97.3 2.7E-05 9.1E-10 77.8 -1.4 72 286-357 28-104 (354)
33 1ku5_A HPHA, archaeal histon; 97.2 0.00065 2.2E-08 53.8 6.5 60 38-98 10-69 (70)
34 2hue_C Histone H4; mini beta s 97.2 0.0011 3.8E-08 54.5 7.6 65 145-210 11-75 (84)
35 2byk_B Chrac-14; nucleosome sl 97.1 0.00055 1.9E-08 60.8 5.7 71 142-212 7-78 (128)
36 1n1j_A NF-YB; histone-like PAI 97.0 0.0017 5.7E-08 54.2 7.6 66 38-103 12-79 (93)
37 2l5a_A Histone H3-like centrom 97.0 0.015 5.1E-07 56.5 14.5 175 32-210 13-226 (235)
38 1jfi_B DR1 protein, transcript 96.8 0.0025 8.5E-08 59.7 7.8 69 37-105 18-87 (179)
39 1id3_C Histone H2A.1; nucleoso 96.8 0.002 6.8E-08 57.5 6.7 69 37-107 28-96 (131)
40 1taf_B TFIID TBP associated fa 96.8 0.0032 1.1E-07 50.5 7.0 65 143-208 5-69 (70)
41 2hue_C Histone H4; mini beta s 96.8 0.0017 5.8E-08 53.5 5.4 65 35-100 11-75 (84)
42 2nqb_C Histone H2A; nucleosome 96.6 0.0029 9.8E-08 55.9 6.1 69 37-107 26-94 (123)
43 3b0c_T CENP-T, centromere prot 96.5 0.0033 1.1E-07 54.5 5.8 62 38-100 11-72 (111)
44 2byk_B Chrac-14; nucleosome sl 96.4 0.007 2.4E-07 53.6 7.3 65 39-103 14-80 (128)
45 2f8n_G Core histone macro-H2A. 96.2 0.0063 2.1E-07 53.5 5.8 69 37-107 25-93 (120)
46 3b0c_T CENP-T, centromere prot 96.1 0.0053 1.8E-07 53.2 4.8 72 142-214 5-76 (111)
47 1f66_C Histone H2A.Z; nucleoso 96.0 0.012 4E-07 52.3 6.7 70 37-108 30-100 (128)
48 1n1j_B NF-YC; histone-like PAI 96.0 0.014 4.8E-07 49.1 6.8 62 37-99 22-84 (97)
49 4g92_C HAPE; transcription fac 96.0 0.011 3.7E-07 51.7 6.3 63 37-99 44-106 (119)
50 1tzy_A Histone H2A-IV; histone 96.0 0.011 3.9E-07 52.5 6.4 69 37-107 28-96 (129)
51 2f8n_K Histone H2A type 1; nuc 95.9 0.015 5.2E-07 52.9 7.2 69 37-107 47-115 (149)
52 1taf_B TFIID TBP associated fa 95.9 0.021 7.1E-07 45.8 6.8 61 38-99 10-70 (70)
53 1taf_A TFIID TBP associated fa 95.8 0.023 7.8E-07 45.3 7.0 60 149-209 6-65 (68)
54 1jfi_B DR1 protein, transcript 95.8 0.017 5.9E-07 54.0 7.1 76 141-217 12-87 (179)
55 2hue_B Histone H3; mini beta s 95.8 0.028 9.4E-07 45.9 7.3 67 33-99 6-72 (77)
56 3v9r_A MHF1, uncharacterized p 95.7 0.016 5.6E-07 48.5 5.8 78 141-219 12-89 (90)
57 1h3o_B Transcription initiatio 95.6 0.036 1.2E-06 45.2 7.3 62 39-100 10-71 (76)
58 1taf_A TFIID TBP associated fa 95.5 0.047 1.6E-06 43.5 7.6 63 38-101 5-67 (68)
59 1jfi_A Transcription regulator 95.3 0.018 6E-07 48.7 4.8 62 37-99 14-76 (98)
60 1tzy_C Histone H3; histone-fol 95.0 0.05 1.7E-06 48.8 6.9 64 36-99 68-131 (136)
61 3v9r_A MHF1, uncharacterized p 94.9 0.048 1.6E-06 45.7 6.2 64 36-99 14-79 (90)
62 4dra_A Centromere protein S; D 94.7 0.031 1.1E-06 48.7 4.8 79 140-219 26-104 (113)
63 3b0b_B CENP-S, centromere prot 94.6 0.033 1.1E-06 48.1 4.6 78 140-218 18-95 (107)
64 3nqj_A Histone H3-like centrom 94.5 0.098 3.4E-06 43.1 7.0 67 34-100 7-75 (82)
65 2yfv_A Histone H3-like centrom 94.4 0.085 2.9E-06 45.0 6.7 67 33-99 30-99 (100)
66 3b0b_B CENP-S, centromere prot 94.4 0.035 1.2E-06 47.9 4.3 65 36-100 21-87 (107)
67 3vh5_A CENP-S; histone fold, c 94.1 0.1 3.6E-06 46.9 7.0 68 39-108 24-93 (140)
68 4dra_A Centromere protein S; D 93.9 0.061 2.1E-06 46.9 4.9 63 37-99 30-94 (113)
69 2byk_A Chrac-16; nucleosome sl 93.7 0.11 3.9E-06 46.6 6.4 62 37-99 22-85 (140)
70 3nqj_A Histone H3-like centrom 93.6 0.14 4.9E-06 42.2 6.3 67 143-209 2-74 (82)
71 3jv3_A Intersectin-1; SH3 doma 93.5 0.011 3.9E-07 56.5 -0.5 70 286-357 107-180 (283)
72 2hue_B Histone H3; mini beta s 93.4 0.18 6.2E-06 41.1 6.5 66 143-208 2-71 (77)
73 2ly8_A Budding yeast chaperone 93.3 0.12 3.9E-06 45.6 5.7 48 52-99 64-111 (121)
74 3vh5_A CENP-S; histone fold, c 93.2 0.089 3.1E-06 47.4 4.8 79 140-219 18-96 (140)
75 2dfk_A Collybistin II; DH doma 92.9 0.012 4.2E-07 60.0 -1.4 68 286-357 66-138 (402)
76 3nqu_A Histone H3-like centrom 92.8 0.21 7.2E-06 45.0 6.6 65 36-100 67-133 (140)
77 3r45_A Histone H3-like centrom 92.6 0.21 7.1E-06 45.8 6.5 64 36-99 83-148 (156)
78 3nqu_A Histone H3-like centrom 92.5 0.2 7E-06 45.1 6.1 69 141-209 58-132 (140)
79 3r45_A Histone H3-like centrom 92.5 0.17 5.7E-06 46.4 5.6 72 141-212 74-151 (156)
80 1txd_A RHO guanine nucleotide 92.4 0.019 6.4E-07 57.9 -0.7 70 286-357 49-127 (385)
81 3jzy_A Intersectin 2; C2 domai 92.4 0.024 8.3E-07 58.7 0.0 137 286-424 52-212 (510)
82 2yfv_A Histone H3-like centrom 92.1 0.22 7.4E-06 42.5 5.6 68 141-208 24-98 (100)
83 1tzy_C Histone H3; histone-fol 91.5 0.36 1.2E-05 43.3 6.6 67 142-208 60-130 (136)
84 2z0q_A XPLN, RHO guanine nucle 91.3 0.036 1.2E-06 54.9 -0.2 67 286-357 44-114 (346)
85 1bh9_B TAFII28; histone fold, 89.9 0.63 2.2E-05 38.8 6.2 64 144-208 16-80 (89)
86 2l5a_A Histone H3-like centrom 89.8 0.49 1.7E-05 45.9 6.3 49 52-100 178-226 (235)
87 2ly8_A Budding yeast chaperone 89.7 0.68 2.3E-05 40.7 6.6 49 161-209 63-111 (121)
88 1foe_A T-lymphoma invasion and 89.2 0.035 1.2E-06 55.8 -2.3 71 286-358 36-120 (377)
89 2pz1_A RHO guanine nucleotide 89.1 0.045 1.5E-06 56.6 -1.6 68 286-357 143-215 (466)
90 1h3o_B Transcription initiatio 86.8 0.33 1.1E-05 39.4 2.5 55 394-448 11-65 (76)
91 2vrw_B P95VAV, VAV1, proto-onc 85.9 0.086 2.9E-06 53.5 -1.8 63 286-357 50-117 (406)
92 1by1_A Protein (PIX); RHO-GTPa 85.6 0.078 2.7E-06 49.0 -2.1 135 286-425 38-193 (209)
93 1nty_A Triple functional domai 85.5 0.14 4.7E-06 50.1 -0.5 64 286-357 34-106 (311)
94 3p6a_A RHO guanine nucleotide 84.9 0.12 4.1E-06 51.5 -1.2 70 286-357 52-129 (377)
95 3b0b_C CENP-X, centromere prot 83.9 2.6 8.8E-05 34.5 6.5 64 142-205 6-71 (81)
96 4dra_E Centromere protein X; D 83.6 3.3 0.00011 34.2 7.1 66 140-205 8-75 (84)
97 2rgn_B RHOA/RAC/CDC42 exchange 83.3 0.17 5.9E-06 50.5 -0.9 65 286-358 37-108 (354)
98 3mpx_A FYVE, rhogef and PH dom 82.8 0.16 5.3E-06 51.8 -1.5 52 301-357 75-126 (434)
99 1xcg_A PDZ-rhogef, RHO guanine 82.0 0.21 7.3E-06 49.6 -0.8 68 286-357 46-122 (368)
100 3odw_A RHO guanine nucleotide 80.3 0.24 8.2E-06 52.7 -1.2 69 286-357 205-282 (536)
101 1kz7_A Guanine nucleotide exch 79.9 0.14 4.8E-06 51.1 -2.9 49 301-357 61-110 (353)
102 3t06_A PDZ-rhogef, RHO guanine 78.0 0.37 1.3E-05 48.8 -0.5 68 286-357 88-164 (418)
103 3ky9_A Proto-oncogene VAV; cal 75.0 0.4 1.4E-05 51.3 -1.4 66 286-357 222-289 (587)
104 1k6k_A ATP-dependent CLP prote 69.9 4.6 0.00016 34.4 4.5 41 179-219 6-46 (143)
105 1khy_A CLPB protein; alpha hel 59.4 8 0.00027 33.0 4.0 39 180-218 11-51 (148)
106 1bh9_B TAFII28; histone fold, 58.4 32 0.0011 28.4 7.2 63 37-100 19-82 (89)
107 3fes_A ATP-dependent CLP endop 58.1 6.1 0.00021 34.2 3.0 40 179-218 12-53 (145)
108 2y1q_A CLPC N-domain, negative 57.6 7.4 0.00025 33.4 3.5 40 179-218 10-51 (150)
109 3fh2_A Probable ATP-dependent 56.3 9.9 0.00034 32.8 4.1 41 179-219 11-53 (146)
110 4dra_E Centromere protein X; D 51.5 46 0.0016 27.3 7.0 60 38-97 16-77 (84)
111 3aji_B S6C, proteasome (prosom 47.6 24 0.00081 27.5 4.7 35 69-103 40-74 (83)
112 3b0b_C CENP-X, centromere prot 47.2 39 0.0013 27.5 5.9 59 38-96 12-72 (81)
113 3zri_A CLPB protein, CLPV; cha 47.1 14 0.00047 33.6 3.6 51 169-219 16-71 (171)
114 3fes_A ATP-dependent CLP endop 45.2 16 0.00053 31.6 3.5 40 179-218 86-127 (145)
115 3fh2_A Probable ATP-dependent 44.4 20 0.00067 30.9 4.0 39 180-218 87-127 (146)
116 3vlf_B 26S protease regulatory 42.7 20 0.00067 28.7 3.5 39 69-107 40-78 (88)
117 2dzn_B 26S protease regulatory 40.7 20 0.0007 28.0 3.3 37 69-105 37-73 (82)
118 2krk_A 26S protease regulatory 38.4 19 0.00065 28.9 2.7 35 69-103 50-84 (86)
119 3ksy_A SOS-1, SON of sevenless 35.8 42 0.0014 38.6 6.1 62 37-99 107-168 (1049)
120 3iz6_V 40S ribosomal protein S 34.8 37 0.0013 29.2 4.1 51 55-113 34-84 (108)
121 1k6k_A ATP-dependent CLP prote 33.6 34 0.0012 28.8 3.8 40 179-218 84-125 (143)
122 1g8p_A Magnesium-chelatase 38 33.0 62 0.0021 30.7 5.9 57 49-105 264-327 (350)
123 1khy_A CLPB protein; alpha hel 32.6 50 0.0017 27.9 4.7 40 179-218 87-127 (148)
124 3zri_A CLPB protein, CLPV; cha 31.1 43 0.0015 30.2 4.2 32 180-211 104-136 (171)
125 3kw6_A 26S protease regulatory 30.9 34 0.0012 26.3 3.0 35 68-102 41-75 (78)
126 2y1q_A CLPC N-domain, negative 29.4 34 0.0012 29.1 3.1 34 179-212 84-117 (150)
127 3uk6_A RUVB-like 2; hexameric 28.9 2.1E+02 0.0071 27.3 9.0 74 36-111 264-341 (368)
128 1r6b_X CLPA protein; AAA+, N-t 27.4 52 0.0018 35.7 4.7 40 179-218 6-45 (758)
129 1wwi_A Hypothetical protein TT 27.0 1E+02 0.0034 27.9 5.7 60 144-204 2-61 (148)
130 3f9v_A Minichromosome maintena 25.3 48 0.0016 35.5 3.9 63 36-100 507-587 (595)
131 2qby_A CDC6 homolog 1, cell di 25.1 2.2E+02 0.0075 26.8 8.3 69 36-104 202-276 (386)
132 2v1u_A Cell division control p 23.0 2E+02 0.0069 27.1 7.6 68 36-103 206-279 (387)
133 3k1j_A LON protease, ATP-depen 22.4 2E+02 0.0068 30.5 8.0 64 36-99 295-374 (604)
134 2r44_A Uncharacterized protein 21.8 98 0.0033 29.4 5.1 56 50-105 224-302 (331)
No 1
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=2.3e-63 Score=470.61 Aligned_cols=191 Identities=71% Similarity=1.070 Sum_probs=184.1
Q ss_pred CchhHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHHHHHH
Q psy17765 32 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS 111 (475)
Q Consensus 32 ~~~sf~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaKhAvs 111 (475)
++++|++||||||||||||++||++||++||+|++|+|+||+.||++|+.+++++|||++|||+||+++|||+|+|||++
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~ 80 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS 80 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhccccCCCCCCCCCCccCcCCCCCcccchhHHHHHHhhcCcc-cccCCChhHHHHHHHHHHHHHHHHHHhHHH
Q psy17765 112 EGTKAVTKYTSSKGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAA 190 (475)
Q Consensus 112 eG~kAV~ky~sSkg~~~k~~~~~~srSsRagL~FPVsRi~r~Lke~~~~-~RI~~~A~VYLaAVLEYLtaEILELAgn~A 190 (475)
+|++|+++|++++ +.+++|+|+||||||+||+|||++++++ +||+++|+|||+||||||++||||+|||+|
T Consensus 81 eG~kAv~k~~~sk--------~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a 152 (192)
T 2jss_A 81 EGTRAVTKYSSST--------QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAA 152 (192)
T ss_dssp HHHHHHHHHHHHC--------SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--------ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998874 2458999999999999999999999886 799999999999999999999999999999
Q ss_pred HhcCCcccchhHHHHHHhccHHHHhhhcCceecCCcccCCc
Q psy17765 191 RDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNI 231 (475)
Q Consensus 191 ~~~k~~rItP~hI~lAI~nD~EL~~Lf~~~tIa~gGV~p~i 231 (475)
+++++++|+|+||++||+||+|||.||+ +||++|||+|+|
T Consensus 153 ~~~~~~~I~p~~i~lAi~nD~eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 153 KDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHTCSSCCHHHHHHHHHTSHHHHHHHC-SCCTTTCCSSCC
T ss_pred HhcCCCccCHHHHHHHHhccHHHHHHHh-hhhcCCCcCCCC
Confidence 9999999999999999999999999996 699999999997
No 2
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=1.1e-44 Score=412.63 Aligned_cols=266 Identities=21% Similarity=0.306 Sum_probs=228.2
Q ss_pred ccccCchhHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHH
Q psy17765 28 KKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 107 (475)
Q Consensus 28 ~~~k~~~sf~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaK 107 (475)
-..||++.|...|+||+.||||++++..+|+.++++++.+++..||. . .+.|+.||+.+|..+||++|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~ 84 (1049)
T 3ksy_A 15 NAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ-------A---QPRSASDVEERVQKSFPHPIDK 84 (1049)
T ss_dssp CCTTSSSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH-------T---CCCSHHHHHHHHHHHSCTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc-------C---CCccHHHHHHHHHHhCCCchHH
Confidence 36799999999999999999999999999999999999988877653 3 3459999999999999999999
Q ss_pred HHHHHhhhhhhhccccCCCCCCCCCCccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHh
Q psy17765 108 HAVSEGTKAVTKYTSSKGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAG 187 (475)
Q Consensus 108 hAvseG~kAV~ky~sSkg~~~k~~~~~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAg 187 (475)
||+.++..++.. +|+|||||||||||||+| +|+|++||+++||||||||||||++|||||||
T Consensus 85 ~~~~~~~~~~~~-----------------~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~ 146 (1049)
T 3ksy_A 85 WAIADAQSAIEK-----------------RKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVG 146 (1049)
T ss_dssp HHHHHHHHHHTT-----------------CCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc-----------------ccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHH
Confidence 999999888764 788999999999999999 89999999999999999999999999999999
Q ss_pred HHHHhcCCcccchhHHHHHHhccHHHHhhhcCceecCCcccCCccccccccccccccccccccCCCCCccccccccccCC
Q psy17765 188 NAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVRVLEQTHQVGLASLLQGHHGRALEAQRVDDVHG 267 (475)
Q Consensus 188 n~A~~~k~~rItP~hI~lAI~nD~EL~~Lf~~~tIa~gGV~p~i~~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (475)
|+|+++++.+|+|+||++||+||+||+.||++.. ..+|++|...
T Consensus 147 ~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~~~de-e~~~~lp~~~----------------------------------- 190 (1049)
T 3ksy_A 147 NYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDV-EDINILSLTD----------------------------------- 190 (1049)
T ss_dssp HHHHHTTCCBCCHHHHHHHHHHCSSHHHHCC-------------------------------------------------
T ss_pred HHHHHcCCceecCccccccccCCHHHHHHHhhcc-ccccCCCCcc-----------------------------------
Confidence 9999999999999999999999999999997542 3445555311
Q ss_pred CCCCcccccccccchhhh----------------hhHHHHHHhcccccc-----ccccccccccccccccCCcchhhhhc
Q psy17765 268 GDGLSLGVLGVGDGVADH----------------VLEEHLENATGLLVD-----ESGNTLDSTSTRQTTDGGLGDSLDVV 326 (475)
Q Consensus 268 ~~~~~~g~l~~~~~v~d~----------------Vfre~l~~~~~l~~~-----~f~n~ld~~e~~~~~~g~leD~le~~ 326 (475)
+++.+.+.++|.++|.++ +|.++|....+++.+ ||+||-+|+++.+.|+..|++.+++.
T Consensus 191 ~~~~~~~~~~~revI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~~l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~~~ 270 (1049)
T 3ksy_A 191 EEPSTSGEQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMT 270 (1049)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCTTTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 123345678888888776 788888876555554 99999999999999999999999998
Q ss_pred cccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 327 TEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 327 ~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
+++.+.+.+|.||.++++...|++|+.|...
T Consensus 271 ~~~~~~~~IgdiFl~~~~~~~F~~Y~~Yc~n 301 (1049)
T 3ksy_A 271 DEGSPHPLVGSCFEDLAEELAFDPYESYARD 301 (1049)
T ss_dssp CSSSSSCCCHHHHHHHHHTTTTSHHHHHHHH
T ss_pred ccCCchhhHHHHHHHHHHHhhhhHHHHHHHh
Confidence 8877889999999999998899999999765
No 3
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=3.6e-40 Score=292.30 Aligned_cols=117 Identities=91% Similarity=1.282 Sum_probs=105.1
Q ss_pred CCCCCCCCCCccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHH
Q psy17765 124 KGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 203 (475)
Q Consensus 124 kg~~~k~~~~~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI 203 (475)
+|+|+|.+++.+|+|+||||||||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||
T Consensus 3 ~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi 82 (123)
T 2nqb_C 3 RGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 82 (123)
T ss_dssp ----------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred CCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHH
Confidence 35667777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHhhhcCceecCCcccCCcccccccccc
Q psy17765 204 QLAIRNDEELNKLLSGVTIAQGGVLPNIQAVRVLEQT 240 (475)
Q Consensus 204 ~lAI~nD~EL~~Lf~~~tIa~gGV~p~i~~~ll~~~~ 240 (475)
++||+||+|||.||+++||++|||+|+||++|+|+++
T Consensus 83 ~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~ 119 (123)
T 2nqb_C 83 QLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 119 (123)
T ss_dssp HHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC-
T ss_pred HHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCccc
Confidence 9999999999999999999999999999999999987
No 4
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=4.4e-40 Score=290.62 Aligned_cols=115 Identities=60% Similarity=0.964 Sum_probs=106.5
Q ss_pred CCCCCCCCccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHH
Q psy17765 126 KGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 205 (475)
Q Consensus 126 ~~~k~~~~~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~l 205 (475)
+|||++++.+|+|+||||||||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++
T Consensus 4 ~~~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~l 83 (120)
T 2f8n_G 4 RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILL 83 (120)
T ss_dssp ------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHH
Confidence 34666677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHhhhcCceecCCcccCCcccccccccc
Q psy17765 206 AIRNDEELNKLLSGVTIAQGGVLPNIQAVRVLEQT 240 (475)
Q Consensus 206 AI~nD~EL~~Lf~~~tIa~gGV~p~i~~~ll~~~~ 240 (475)
||+||+|||.||+++||++|||+|+||++|+|+++
T Consensus 84 AI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~ 118 (120)
T 2f8n_G 84 AVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118 (120)
T ss_dssp HHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC-
T ss_pred HHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCcc
Confidence 99999999999999999999999999999999986
No 5
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=7.4e-40 Score=288.14 Aligned_cols=120 Identities=90% Similarity=1.169 Sum_probs=92.7
Q ss_pred CCCC--cchhhhhhccccccccccccccccCchhHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17765 4 GKSS--GKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAH 81 (475)
Q Consensus 4 m~~k--~~~~~k~gka~~~~~~~~kk~~~k~~~sf~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~ 81 (475)
|||+ .+++++.+|+..+..++++|++++++++|+.||||||||||||++||++||++||+||+||||||+.||++|++
T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~ 80 (123)
T 2nqb_D 1 IPPKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAH 80 (123)
T ss_dssp ----------------------------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccccccccccccCCCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6776 34444555554444456677788899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHhCcHHHHHHHHHHhhhhhhhcccc
Q psy17765 82 YNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123 (475)
Q Consensus 82 ~~kr~TlT~rdIqtAVrllLPgeLaKhAvseG~kAV~ky~sS 123 (475)
+|+|+|||+||||+||||+|||||+|||++||++||++|+++
T Consensus 81 ~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ss 122 (123)
T 2nqb_D 81 YNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122 (123)
T ss_dssp HTTCCEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCCcCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999999999876
No 6
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=2.4e-39 Score=289.81 Aligned_cols=115 Identities=74% Similarity=1.144 Sum_probs=105.1
Q ss_pred CCCCCCCCccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHH
Q psy17765 126 KGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 205 (475)
Q Consensus 126 ~~~k~~~~~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~l 205 (475)
++++.+++.+|+|+||||||||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++
T Consensus 7 ~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~l 86 (131)
T 1id3_C 7 KAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQL 86 (131)
T ss_dssp ---------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHH
Confidence 34555667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHhhhcCceecCCcccCCcccccccccc
Q psy17765 206 AIRNDEELNKLLSGVTIAQGGVLPNIQAVRVLEQT 240 (475)
Q Consensus 206 AI~nD~EL~~Lf~~~tIa~gGV~p~i~~~ll~~~~ 240 (475)
||+||+|||.||+++||++|||+|+||++|+|+++
T Consensus 87 AI~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~ 121 (131)
T 1id3_C 87 AIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS 121 (131)
T ss_dssp HHHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSC
T ss_pred HHhccHHHHHHhcCceecCCccCCCccHHHcCccc
Confidence 99999999999999999999999999999999988
No 7
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=2.7e-39 Score=288.81 Aligned_cols=114 Identities=87% Similarity=1.252 Sum_probs=104.9
Q ss_pred CCCCCCCccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHH
Q psy17765 127 GGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 206 (475)
Q Consensus 127 ~~k~~~~~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lA 206 (475)
+++.+++.+|+|+|+||||||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++|
T Consensus 8 ~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lA 87 (129)
T 1tzy_A 8 GGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLA 87 (129)
T ss_dssp ------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHH
Confidence 45666678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHhhhcCceecCCcccCCcccccccccc
Q psy17765 207 IRNDEELNKLLSGVTIAQGGVLPNIQAVRVLEQT 240 (475)
Q Consensus 207 I~nD~EL~~Lf~~~tIa~gGV~p~i~~~ll~~~~ 240 (475)
|+||+|||.||+++||++|||+|+||++|+|+++
T Consensus 88 I~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~ 121 (129)
T 1tzy_A 88 IRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121 (129)
T ss_dssp HHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC--
T ss_pred HhccHHHHHHhCCCeecCCCcCCCCCHHHcCccc
Confidence 9999999999999999999999999999999987
No 8
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=3.7e-39 Score=284.74 Aligned_cols=101 Identities=90% Similarity=1.223 Sum_probs=91.0
Q ss_pred cccccccccCchhHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCc
Q psy17765 23 KSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 102 (475)
Q Consensus 23 ~~~kk~~~k~~~sf~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLP 102 (475)
++++|++++++++|++||||||||||||++||++||++|||||+||||||+.||++|+++|+|+|||+||||+||||+||
T Consensus 25 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 104 (126)
T 1tzy_B 25 KGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLP 104 (126)
T ss_dssp ---------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSC
T ss_pred CCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 45567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccc
Q psy17765 103 GELAKHAVSEGTKAVTKYTSS 123 (475)
Q Consensus 103 geLaKhAvseG~kAV~ky~sS 123 (475)
|||+|||++||++||++|+++
T Consensus 105 GELaKhAvseGtkAV~ky~ss 125 (126)
T 1tzy_B 105 GELAKHAVSEGTKAVTKYTSS 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999876
No 9
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=1.5e-38 Score=289.63 Aligned_cols=113 Identities=87% Similarity=1.243 Sum_probs=104.2
Q ss_pred CCCCCCccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHH
Q psy17765 128 GKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 207 (475)
Q Consensus 128 ~k~~~~~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI 207 (475)
+|.+++.+|+|+||||||||+||+||||+++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++||
T Consensus 28 ~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI 107 (149)
T 2f8n_K 28 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAI 107 (149)
T ss_dssp ------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHH
Confidence 56666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHhhhcCceecCCcccCCcccccccccc
Q psy17765 208 RNDEELNKLLSGVTIAQGGVLPNIQAVRVLEQT 240 (475)
Q Consensus 208 ~nD~EL~~Lf~~~tIa~gGV~p~i~~~ll~~~~ 240 (475)
+||+|||.||+++||++|||+|+||++|+|+++
T Consensus 108 ~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~ 140 (149)
T 2f8n_K 108 RNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 140 (149)
T ss_dssp HHSHHHHHHTTTEEETTCCCCCCCCGGGSCC--
T ss_pred hccHHHHHHhcCceEcCCCCCCCccHHHcCccc
Confidence 999999999999999999999999999999987
No 10
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=3.1e-38 Score=281.62 Aligned_cols=112 Identities=63% Similarity=0.910 Sum_probs=99.5
Q ss_pred CCCCCCccCcCCCCCcccchhHHHHHHhhcCcc-cccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHH
Q psy17765 128 GKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 206 (475)
Q Consensus 128 ~k~~~~~~srSsRagL~FPVsRi~r~Lke~~~~-~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lA 206 (475)
++.+++.+|+|+||||||||+||||||++++|+ +||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++|
T Consensus 11 ~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lA 90 (128)
T 1f66_C 11 GKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 90 (128)
T ss_dssp ------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred CCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHH
Confidence 344556789999999999999999999999987 5999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHhhhcCceecCCcccCCcccccccccc
Q psy17765 207 IRNDEELNKLLSGVTIAQGGVLPNIQAVRVLEQT 240 (475)
Q Consensus 207 I~nD~EL~~Lf~~~tIa~gGV~p~i~~~ll~~~~ 240 (475)
|+||+||+.||+ +||++|||+|+||++|+|+++
T Consensus 91 I~nDeEL~~Ll~-~tia~ggv~P~i~~~l~~k~~ 123 (128)
T 1f66_C 91 IRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKG 123 (128)
T ss_dssp HHHSHHHHHHCC-SEETTCCCCCCCCGGGC----
T ss_pred HhccHHHhhhhc-ceecCCccCCCCCHHhcCccc
Confidence 999999999996 599999999999999999987
No 11
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=2.2e-35 Score=260.73 Aligned_cols=77 Identities=77% Similarity=1.061 Sum_probs=66.0
Q ss_pred ccCCccCcCCCccceeehhhhhccccCCCCCchHHHHHHhhHHHHHHhHhHHhhhcccccCCCcCCCCCc-hhheehc
Q psy17765 377 KSDKKKKPRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITKDL-CPSVCLY 453 (475)
Q Consensus 377 ~~~~k~~~~~~esy~~Yi~kvLkqvhp~~giS~kam~imnsfv~Diferia~Eas~L~~~~kr~Tltsr~-~~~~~~~ 453 (475)
+.++|++++|+|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+|| |+||+|+
T Consensus 25 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 25 KGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp ---------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4456677889999999999999999999999999999999999999999999999999999999999986 8899884
No 12
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=2.7e-35 Score=259.21 Aligned_cols=92 Identities=84% Similarity=1.092 Sum_probs=67.7
Q ss_pred ccchhccccccccccccCCccCcCCCccceeehhhhhccccCCCCCchHHHHHHhhHHHHHHhHhHHhhhcccccCCCcC
Q psy17765 362 GKAVKKAGKAQKNITKSDKKKKPRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRST 441 (475)
Q Consensus 362 ~k~~~~~~~~~~~~~~~~~k~~~~~~esy~~Yi~kvLkqvhp~~giS~kam~imnsfv~Diferia~Eas~L~~~~kr~T 441 (475)
.+++++.++......+.++|++++|+|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|
T Consensus 7 ~~~~k~~~~~~~~~~~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~T 86 (123)
T 2nqb_D 7 GKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRST 86 (123)
T ss_dssp ----------------------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CcccccccccccccCCCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34444443333222345567778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc-hhheehc
Q psy17765 442 ITKDL-CPSVCLY 453 (475)
Q Consensus 442 ltsr~-~~~~~~~ 453 (475)
||+|| |+||+|+
T Consensus 87 itsreIqtAvrLl 99 (123)
T 2nqb_D 87 ITSREIQTAVRLL 99 (123)
T ss_dssp ECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 99986 8899884
No 13
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.85 E-value=7.8e-23 Score=193.39 Aligned_cols=68 Identities=68% Similarity=0.982 Sum_probs=65.1
Q ss_pred CCccceeehhhhhccccCCCCCchHHHHHHhhHHHHHHhHhHHhhhcccccCCCcCCCCCc-hhheehc
Q psy17765 386 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITKDL-CPSVCLY 453 (475)
Q Consensus 386 ~~esy~~Yi~kvLkqvhp~~giS~kam~imnsfv~Diferia~Eas~L~~~~kr~Tltsr~-~~~~~~~ 453 (475)
|+|+|+.||||||||||||+|||++||.+|||||+|+|||||.||++|++||+|+|||+|| |+||+|+
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999999999999999999999987 7898874
No 14
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.72 E-value=4.2e-18 Score=145.27 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=62.5
Q ss_pred cCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhh
Q psy17765 137 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 216 (475)
Q Consensus 137 rSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~L 216 (475)
++.+++++||++||+|+||.+.+..||+..|++|+++++|||+.||+++|++.|+++++++|+|+||..||++|++|+.|
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy17765 217 LS 218 (475)
Q Consensus 217 f~ 218 (475)
+.
T Consensus 84 ~d 85 (98)
T 1jfi_A 84 KA 85 (98)
T ss_dssp --
T ss_pred Hh
Confidence 85
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.61 E-value=5.7e-15 Score=135.36 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=126.2
Q ss_pred HHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHHHHHHHhhhhh
Q psy17765 38 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 117 (475)
Q Consensus 38 ~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaKhAvseG~kAV 117 (475)
.-|.|++|+.-|...||.+|-.-+...+..+...|+.+|..++...+|+|++..||..|+..+ | +
T Consensus 8 a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l------------g---~ 72 (154)
T 1f1e_A 8 AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL------------M---V 72 (154)
T ss_dssp HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH------------T---C
T ss_pred cHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc------------c---c
Confidence 458899999888899999999999999999999999999999999999999999998887432 1 1
Q ss_pred hhccccCCCCCCCCCCccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcc
Q psy17765 118 TKYTSSKGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 197 (475)
Q Consensus 118 ~ky~sSkg~~~k~~~~~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~r 197 (475)
..| -.+.++.||++.|.|+||++ ...||++.|..+|+.+||+++.+|.+.|.++|++.++++
T Consensus 73 ~~v-----------------~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKT 134 (154)
T 1f1e_A 73 EGV-----------------EDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKT 134 (154)
T ss_dssp TTS-----------------TTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred ccC-----------------CccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 111 13568999999999999998 788999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhcc
Q psy17765 198 IIPRHLQLAIRND 210 (475)
Q Consensus 198 ItP~hI~lAI~nD 210 (475)
|+++||.+|+.++
T Consensus 135 It~eDV~~Al~~~ 147 (154)
T 1f1e_A 135 VQGEDVEKAITYS 147 (154)
T ss_dssp ECHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999876
No 16
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.49 E-value=5.2e-14 Score=119.65 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=72.2
Q ss_pred CCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhhhc
Q psy17765 141 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 218 (475)
Q Consensus 141 agL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~Lf~ 218 (475)
.+++||++||+|+||.+.+..||+..|++|++.++||++.++++.|++.|++.++++|+++||..||++|++|+.|..
T Consensus 16 ~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp ----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred CCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 368999999999999999989999999999999999999999999999999999999999999999999999999884
No 17
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.45 E-value=1.3e-13 Score=121.36 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=72.8
Q ss_pred CcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhhh
Q psy17765 142 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 217 (475)
Q Consensus 142 gL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~Lf 217 (475)
..+||++||+|+||.+.+..+|+..|++|+++++||++.+|++.|++.|++.++++|+|+||..||++|++|+.|-
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999998665
No 18
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.28 E-value=2.3e-12 Score=116.45 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=62.4
Q ss_pred ccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHH-HhcCCcccchhHHHHHHhccHH
Q psy17765 134 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTRIIPRHLQLAIRNDEE 212 (475)
Q Consensus 134 ~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A-~~~k~~rItP~hI~lAI~nD~E 212 (475)
..+++.+.+++||++||+|+||.+....+|+..|+++++.++|||+.++.+.|++.| ...++++|+++||..||.++++
T Consensus 9 ~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~ 88 (140)
T 2byk_A 9 PVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKN 88 (140)
T ss_dssp --------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCST
T ss_pred CCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCch
Confidence 356788899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHhhh
Q psy17765 213 LNKLL 217 (475)
Q Consensus 213 L~~Lf 217 (475)
|..|.
T Consensus 89 ~dFL~ 93 (140)
T 2byk_A 89 LEFLL 93 (140)
T ss_dssp TGGGT
T ss_pred hhhHh
Confidence 99988
No 19
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.13 E-value=8.8e-11 Score=100.78 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=70.4
Q ss_pred CCCccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhcc
Q psy17765 131 KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 210 (475)
Q Consensus 131 ~~~~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD 210 (475)
+.+..++++.++ ||+..|+|+++.+.+ .||+..+..+|+.+|||++.+|++.|.+++++.++++|+|+||.+|+++.
T Consensus 18 r~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 18 RHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp ---CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred ccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 345568888888 999999999999876 79999999999999999999999999999999999999999999999976
Q ss_pred H
Q psy17765 211 E 211 (475)
Q Consensus 211 ~ 211 (475)
.
T Consensus 95 g 95 (103)
T 1tzy_D 95 G 95 (103)
T ss_dssp T
T ss_pred C
Confidence 4
No 20
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.10 E-value=1.3e-10 Score=99.75 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=63.4
Q ss_pred CCCccCcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhcc
Q psy17765 131 KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 210 (475)
Q Consensus 131 ~~~~~srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD 210 (475)
+.+..++++.++ ||+..|+|+++.+.+ .||+..+..+|+.+|||++.+|++.|.+++++.++++|+|+||.+|+++.
T Consensus 18 r~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 18 RHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp --------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred chhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 334556888888 999999999999877 79999999999999999999999999999999999999999999999976
Q ss_pred HH
Q psy17765 211 EE 212 (475)
Q Consensus 211 ~E 212 (475)
.+
T Consensus 95 g~ 96 (103)
T 2yfw_B 95 GR 96 (103)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.09 E-value=9.8e-11 Score=95.21 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=63.0
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCc
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 102 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLP 102 (475)
...|+|++|+++|+..||.+|+..|+.++.+++++|+.||..+|..++|+||+.+||+.|++.+|-
T Consensus 7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999999999999999863
No 22
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.05 E-value=2.3e-11 Score=98.96 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=56.4
Q ss_pred eehhhhhccccCCCCCchHHHHHHhhHHHHHHhHhHHhhhcccccCCCcCCCCCc-hhheeh
Q psy17765 392 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITKDL-CPSVCL 452 (475)
Q Consensus 392 ~Yi~kvLkqvhp~~giS~kam~imnsfv~Diferia~Eas~L~~~~kr~Tltsr~-~~~~~~ 452 (475)
.+|+|++||+|||.+||++|+.+|+.++++++++||.||+.+|++++|.||++++ +.|+..
T Consensus 8 A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 8 GTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp HHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999987 555543
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.43 E-value=4.9e-07 Score=82.90 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=60.5
Q ss_pred ccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHH
Q psy17765 144 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 207 (475)
Q Consensus 144 ~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI 207 (475)
-+|..-|.|++|++--..||+..|...|+.++|.+..+|...|.++|.+.+++.|+++||..|+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 4899999999999855699999999999999999999999999999999999999999999887
No 24
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.24 E-value=2e-06 Score=67.93 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=61.4
Q ss_pred ccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhc
Q psy17765 144 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 209 (475)
Q Consensus 144 ~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~n 209 (475)
.||..+|.|+||+. ...||++.|...|.-++|++..+|.+-|...|.+.+++.|+|+||+.|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 48999999999998 678999999999999999999999999999999999999999999999863
No 25
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.24 E-value=2e-06 Score=68.47 Aligned_cols=66 Identities=32% Similarity=0.417 Sum_probs=62.0
Q ss_pred cccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhc
Q psy17765 143 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 209 (475)
Q Consensus 143 L~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~n 209 (475)
..||.+.|+|++|++ -..|++..+...|..++|+++.+|++-|..+|.+.+++.|+++||++|+++
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 368999999999986 468999999999999999999999999999999999999999999999875
No 26
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.17 E-value=2.2e-06 Score=67.61 Aligned_cols=62 Identities=26% Similarity=0.351 Sum_probs=58.3
Q ss_pred HHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 38 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 38 ~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
.-|.|++|++ ++..||++|+..|...+..+++.|+.+|...+...+|+||+.+||+.|++.+
T Consensus 6 a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 6 APIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred cHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4588999999 8899999999999999999999999999999999999999999999998864
No 27
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.74 E-value=5e-05 Score=64.96 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=60.7
Q ss_pred hhHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 34 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 34 ~sf~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
+--...|.|+++..-. ..||.++...|...+..+++.|+.+|..++.+++|+|+|.+||+.|++.+
T Consensus 29 gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 29 GITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp GSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 3346889999999876 57999999999999999999999999999999999999999999999975
No 28
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.70 E-value=5.2e-05 Score=64.89 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=59.7
Q ss_pred HHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 36 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 36 f~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
=...|.|+++..-. ..||.++.+.|...+..+++.|+.+|..++.+++|+|+|.+||+.|++.+
T Consensus 31 p~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 31 TKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp CHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 46789999999876 57999999999999999999999999999999999999999999999976
No 29
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.56 E-value=0.0002 Score=61.32 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=63.1
Q ss_pred CcCCCCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhcc
Q psy17765 136 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 210 (475)
Q Consensus 136 srSsRagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD 210 (475)
.+-+-.+ +|..-|.|+++.+. ..||+..+..-|..++||+..+|+.-|..+++..+++.|+++||..|+...
T Consensus 22 ~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 22 LRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp --CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3443433 89999999999864 489999999999999999999999999999999999999999999999855
No 30
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.51 E-value=0.0002 Score=59.85 Aligned_cols=67 Identities=10% Similarity=0.262 Sum_probs=62.3
Q ss_pred CcccchhHHHHHHhhc-CcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHh
Q psy17765 142 GLQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 208 (475)
Q Consensus 142 gL~FPVsRi~r~Lke~-~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~ 208 (475)
.+.||.++|.|+||+. ....||+..|...|+-+.|.+..+|.+-|...|.+.+++.|+++||..|+.
T Consensus 6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 5899999999999987 345799999999999999999999999999999999999999999999997
No 31
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.27 E-value=0.00044 Score=59.19 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=58.7
Q ss_pred HHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 36 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 36 f~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
=...|.|+.+..-+ ..||.++.+.+...+..+++.|+.+|..++.+.+|+|+|..||..|++.+
T Consensus 30 p~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 30 TKPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp CHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 36789999998744 56999999999999999999999999999999999999999999999875
No 32
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=97.26 E-value=2.7e-05 Score=77.82 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=63.0
Q ss_pred hhHHHHHHhcccccc-----ccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 286 VLEEHLENATGLLVD-----ESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 286 Vfre~l~~~~~l~~~-----~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
+|.++|.....++.+ ||+||-+|+++...|+..|++.+++.+++.+++.+|.||.++++...|++|+.|...
T Consensus 28 ~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~~~f~~Y~~Y~~n 104 (354)
T 1dbh_A 28 VFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARD 104 (354)
T ss_dssp TTTHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCTTSSSCCCHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHhHHhhhhHHHHHHHh
Confidence 788888876555554 999999999999999999999999988877889999999999987679999999775
No 33
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.21 E-value=0.00065 Score=53.85 Aligned_cols=60 Identities=17% Similarity=0.330 Sum_probs=55.1
Q ss_pred HHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHH
Q psy17765 38 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 98 (475)
Q Consensus 38 ~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVr 98 (475)
..|.|++|.. ....+|.++...+..++..+++.|+.+|...+.+.+|+|++.+||+.|++
T Consensus 10 a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 10 APVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3588888886 46789999999999999999999999999999999999999999999875
No 34
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.15 E-value=0.0011 Score=54.54 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=61.1
Q ss_pred cchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhcc
Q psy17765 145 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 210 (475)
Q Consensus 145 FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD 210 (475)
+|..-|.|+++.+. ..||+..+.--|..++||...+|+.-|..++++.+++.|+++||..|+...
T Consensus 11 ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 11 ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 78999999999875 489999999999999999999999999999999999999999999999865
No 35
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.11 E-value=0.00055 Score=60.80 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=61.5
Q ss_pred CcccchhHHHHHHhh-cCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHH
Q psy17765 142 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 212 (475)
Q Consensus 142 gL~FPVsRi~r~Lke-~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~E 212 (475)
.+.||.++|.|+|++ ..-..+|+..|...|+-+.|.+..+|-..|...|.+.+++.|+++||..|+...+-
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f 78 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDF 78 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 578999999999996 44468999999999999999999999999999999999999999999999997653
No 36
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.03 E-value=0.0017 Score=54.20 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=59.6
Q ss_pred HHHHHHhhccCCC-CCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh-CcH
Q psy17765 38 IYIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL-LPG 103 (475)
Q Consensus 38 ~yI~KVLKQVhPd-~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll-LPg 103 (475)
..|.|+.|..-|+ ..||.+|...|...+..++..|+.+|...|...+|+||+..||..|++.+ |..
T Consensus 12 a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~ 79 (93)
T 1n1j_A 12 ANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDS 79 (93)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGG
T ss_pred hHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHh
Confidence 4689999999775 67999999999999999999999999999999999999999999999865 443
No 37
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.015 Score=56.46 Aligned_cols=175 Identities=18% Similarity=0.223 Sum_probs=117.2
Q ss_pred CchhHHHHHHHHhhccCC---CCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh----CcHH
Q psy17765 32 RKESYAIYIYKVLKQVHP---DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL----LPGE 104 (475)
Q Consensus 32 ~~~sf~~yI~KVLKQVhP---d~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll----LPge 104 (475)
++-.|+..++.+.....+ ++.+++.|+.-|..-....+..+-+.+.-.+...+|-||.++|||-|-|+- -|.+
T Consensus 13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~~~p~e 92 (235)
T 2l5a_A 13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFLVPRG 92 (235)
T ss_dssp SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSCCCCSS
T ss_pred cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhccCCchh
Confidence 466799999999888765 789999999888776666666665566666678899999999999998874 2332
Q ss_pred HH-HHHH-----HHhh-hhhhhccccCCC--------------CCCCCCCccCcCCC-----------CCcccchhHHHH
Q psy17765 105 LA-KHAV-----SEGT-KAVTKYTSSKGK--------------GGKAKTKSKTRSSR-----------AGLQFPVGRIHR 152 (475)
Q Consensus 105 La-KhAv-----seG~-kAV~ky~sSkg~--------------~~k~~~~~~srSsR-----------agL~FPVsRi~r 152 (475)
+. +++- ..-. .-+.||.+-.+. -|.-+....-.+.+ .-++ ++ +.|
T Consensus 93 vme~~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~tG~iv~dnGh~~~l~~~~~~~~~~~r~~~vLrD~i~--i~-~~R 169 (235)
T 2l5a_A 93 SMERHKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRDIID--IS-DEE 169 (235)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSSSCCCCCCCCCCCSCCCCCGGGCCSSTHHHHHHHHHH--HT-CCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCCceeeeCcHHHHhhcCCCCCccchhHHHHHHHhhc--cc-HHH
Confidence 22 2221 1111 223466442211 11111111000000 0011 11 224
Q ss_pred HHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhcc
Q psy17765 153 LLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 210 (475)
Q Consensus 153 ~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD 210 (475)
+.+.+. ..||+..+..-+..+||.+..+|+.-|..++...+++.|++.||..|+..-
T Consensus 170 laRrgG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 170 DGDKGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp TSCCTT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 444433 379999999999999999999999999999999999999999999998744
No 38
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.84 E-value=0.0025 Score=59.71 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=63.1
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh-CcHHH
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL-LPGEL 105 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll-LPgeL 105 (475)
..-|.|+.|++-|+..||.+|...|...+..+...|+.+|..+|...+|+||+..||..|+.-+ |++-+
T Consensus 18 ~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 18 RAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp HHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred HHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 4568999999999889999999999999999999999999999999999999999999999987 66533
No 39
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.82 E-value=0.002 Score=57.51 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=60.7
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHH
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 107 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaK 107 (475)
...|+|+|++..---.|+..|..+|...+..+...|.+.|...++.+++++|+++|||.||+- ..||.+
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n--DeEL~~ 96 (131)
T 1id3_C 28 VGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN--DDELNK 96 (131)
T ss_dssp HHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT--CHHHHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc--cHHHHH
Confidence 578999999975555899999999999999999999999999999999999999999999995 445543
No 40
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.79 E-value=0.0032 Score=50.54 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=59.9
Q ss_pred cccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHh
Q psy17765 143 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 208 (475)
Q Consensus 143 L~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~ 208 (475)
-.||+.-|.++.+.-. ..+++..+..-|+--+||-..||++-|.+.+++.++++++.+||..|++
T Consensus 5 s~lp~~~v~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4789999999998644 4799999999999999999999999999999999999999999999975
No 41
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.76 E-value=0.0017 Score=53.46 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=58.3
Q ss_pred hHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 35 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 35 sf~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
-=...|.|+.+..-. ..||.++.+.+...+...++.|+.+|..++.+.+|+|+|..||..|++..
T Consensus 11 ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 11 ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 345679999998754 56999999999999999999999999999999999999999999998864
No 42
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=96.61 E-value=0.0029 Score=55.88 Aligned_cols=69 Identities=22% Similarity=0.235 Sum_probs=61.1
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHH
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 107 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaK 107 (475)
...|+|+|++..---.|+..|..+|...+..+...|.+.|...+..+++++||++|||.||+- ..||..
T Consensus 26 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n--DeEL~~ 94 (123)
T 2nqb_C 26 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN--DEELNK 94 (123)
T ss_dssp HHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT--SHHHHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc--cHHHHH
Confidence 578999999985556899999999999999999999999999999999999999999999996 555543
No 43
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.52 E-value=0.0033 Score=54.46 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=56.8
Q ss_pred HHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 38 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 38 ~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
..|+|+.+.. ....||.++...+..++..+++.|+.+|..++.+.+|+|++..||..|++..
T Consensus 11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~ 72 (111)
T 3b0c_T 11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQ 72 (111)
T ss_dssp HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHC
Confidence 4678877776 6778999999999999999999999999999999999999999999999873
No 44
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.40 E-value=0.007 Score=53.65 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=59.1
Q ss_pred HHHHHhhccCCC-CCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh-CcH
Q psy17765 39 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL-LPG 103 (475)
Q Consensus 39 yI~KVLKQVhPd-~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll-LPg 103 (475)
.|.|+.|+.-|+ ..||.+|...|...+.-+...|+.+|..+|...+|+||+..||..|+..+ |..
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~ 80 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFES 80 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHH
Confidence 589999987775 57999999999999999999999999999999999999999999999988 443
No 45
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=96.21 E-value=0.0063 Score=53.50 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=60.9
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHH
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 107 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaK 107 (475)
...|+|.|+...--..|+..|-.+|...+..+...|.+.|...++.+++++||+++||.||+- ..||.+
T Consensus 25 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n--DeEL~~ 93 (120)
T 2f8n_G 25 VGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN--DEELNQ 93 (120)
T ss_dssp HHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT--SHHHHH
T ss_pred hHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc--CHHHHH
Confidence 568999999987666899999999999999999999999999999999999999999999996 555544
No 46
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.12 E-value=0.0053 Score=53.21 Aligned_cols=72 Identities=8% Similarity=0.046 Sum_probs=61.7
Q ss_pred CcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHH
Q psy17765 142 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELN 214 (475)
Q Consensus 142 gL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~ 214 (475)
.+.+|-+-|.|+++.+ -..||+..+..-|..+++.++.+|..-|..+|++.+++.|+++||.+|++.+..+.
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~ 76 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVT 76 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSB
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcc
Confidence 4689999999999986 45799999999999999999999999999999999999999999999999876553
No 47
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=96.03 E-value=0.012 Score=52.30 Aligned_cols=70 Identities=20% Similarity=0.140 Sum_probs=60.7
Q ss_pred HHHHHHHhhccCCC-CCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHHH
Q psy17765 37 AIYIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKH 108 (475)
Q Consensus 37 ~~yI~KVLKQVhPd-~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaKh 108 (475)
...|+|.|+....- ..|+..|-.+|...+..+...|.+.|...+..+++++||+++||.||+- ..||..-
T Consensus 30 V~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n--DeEL~~L 100 (128)
T 1f66_C 30 VGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG--DEELDSL 100 (128)
T ss_dssp HHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH--SHHHHHH
T ss_pred hHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc--cHHHhhh
Confidence 56899999987643 4799999999999999999999999999999999999999999999997 5666543
No 48
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.01 E-value=0.014 Score=49.14 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=56.2
Q ss_pred HHHHHHHhhccCCCC-CcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 37 AIYIYKVLKQVHPDT-GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~-~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
...|+|++|.- |+. .||.+|...|.-.+..+...|+.+|...+..++|+||+.+||+.||+-
T Consensus 22 ~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~ 84 (97)
T 1n1j_B 22 LARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK 84 (97)
T ss_dssp HHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhc
Confidence 46799999986 774 599999999999999999999999999999999999999999999875
No 49
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=96.01 E-value=0.011 Score=51.73 Aligned_cols=63 Identities=21% Similarity=0.151 Sum_probs=56.1
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
...|+|++|.......||.+|..++.--+.-+...|+.+|...|..++|+||+.+||..||+-
T Consensus 44 vaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 44 LARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSK 106 (119)
T ss_dssp HHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence 567999999863334699999999999999999999999999999999999999999999975
No 50
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=95.97 E-value=0.011 Score=52.46 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=60.8
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHH
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 107 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaK 107 (475)
...|+|+|++..---.|+..|-.+|...+..+...|.+.|...+..+++++||++|||.||+- ..||..
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n--DeEL~~ 96 (129)
T 1tzy_A 28 VGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN--DEELNK 96 (129)
T ss_dssp HHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT--SHHHHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc--cHHHHH
Confidence 568999999975556899999999999999999999999999999999999999999999995 445543
No 51
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=95.95 E-value=0.015 Score=52.91 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=61.1
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHH
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 107 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaK 107 (475)
...|+|+|++..---.|+..|-.+|...+..+...|.+.|...++.+++++|++++||.||+- ..||.+
T Consensus 47 VgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n--DeEL~~ 115 (149)
T 2f8n_K 47 VGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN--DEELNK 115 (149)
T ss_dssp HHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH--SHHHHH
T ss_pred HHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc--cHHHHH
Confidence 568999999986666899999999999999999999999999999999999999999999996 555544
No 52
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.85 E-value=0.021 Score=45.82 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=53.1
Q ss_pred HHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 38 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 38 ~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
..|.++.+++-= ..+|.++...|-.-+..-+..|++||.++++..+|+|+|..||..|+++
T Consensus 10 ~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 10 ESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 357777777742 3689999999999999999999999999999999999999999998763
No 53
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.85 E-value=0.023 Score=45.34 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=55.1
Q ss_pred HHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhc
Q psy17765 149 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 209 (475)
Q Consensus 149 Ri~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~n 209 (475)
-|+++|++.. ..+++..++.-|.-.+|-.+.+|++-|..+|.+.+++.|+.+||++||..
T Consensus 6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 5788998744 47999999999999999999999999999999999999999999999974
No 54
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.81 E-value=0.017 Score=54.00 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=65.0
Q ss_pred CCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhhh
Q psy17765 141 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 217 (475)
Q Consensus 141 agL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~Lf 217 (475)
..+.||.+.|.|+|++..-..||+..|...|+-+.+-+...|-..|...|.+.+++.|+++||..|+. +-++..+.
T Consensus 12 eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 12 DDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred hhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 46899999999999986435799999999999999999999988888889999999999999999998 44444433
No 55
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=95.75 E-value=0.028 Score=45.92 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=59.8
Q ss_pred chhHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 33 KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 33 ~~sf~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
+-.|+.-++.+.....++..+++.|+.-|..-....+..+.+++..++.+.+|.|+.++|||-|.++
T Consensus 6 k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 6 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 3457777888877777889999999999999999999999999999999999999999999999886
No 56
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.016 Score=48.54 Aligned_cols=78 Identities=14% Similarity=0.028 Sum_probs=59.6
Q ss_pred CCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhhhcC
Q psy17765 141 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 219 (475)
Q Consensus 141 agL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~Lf~~ 219 (475)
+.|.+-|++|=.-.-+ ..+..++..+..-|+.+++..+.+|.+=+...|++.+++.|++.||.++++.++.|..++.+
T Consensus 12 aal~~~V~ki~~e~~~-~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 12 ARLWIRVEERLQQVLS-SEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHHHHHHHHSC-SSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH-hcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 4577777776543311 11245777777777777777777778777888999999999999999999999999998764
No 57
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.59 E-value=0.036 Score=45.16 Aligned_cols=62 Identities=16% Similarity=0.355 Sum_probs=57.2
Q ss_pred HHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 39 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 39 yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
-|...++||-|+..+..++-+.|-.+..++.+.++..|++|+.+.+..|+.++|||......
T Consensus 10 ~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 10 KLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 37788899999999999999999999999999999999999999999999999999887653
No 58
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.51 E-value=0.047 Score=43.51 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=55.3
Q ss_pred HHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhC
Q psy17765 38 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 101 (475)
Q Consensus 38 ~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllL 101 (475)
..|.++||..-= ...+..+...|-.|+.+....|+.+|..++.+.+|+|++..||+.|++..+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 457888887532 367999999999999999999999999999999999999999999998653
No 59
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.31 E-value=0.018 Score=48.71 Aligned_cols=62 Identities=13% Similarity=0.278 Sum_probs=52.1
Q ss_pred HHHHHHHhhccCCC-CCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 37 AIYIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 37 ~~yI~KVLKQVhPd-~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
...|+|++|. .|+ ..||.+|.-++.-.+..+...|+.+|...+..++++||+.+||+.||+-
T Consensus 14 vaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 14 PARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp HHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred hHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 5679999997 556 5699999999999999999999999999999999999999999988865
No 60
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=94.96 E-value=0.05 Score=48.82 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=56.6
Q ss_pred HHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 36 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 36 f~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
|+-.++.+.....+++.++++|+.-|..-..+.+..|.+++..++.+.++.||.++|||-|.++
T Consensus 68 F~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 68 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 6666666666666889999999999999999999999999999999999999999999999887
No 61
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.048 Score=45.72 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=54.7
Q ss_pred HHHHHHHHhhccCC--CCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 36 YAIYIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 36 f~~yI~KVLKQVhP--d~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
.--.+-|+..++-+ +..+|.+++.-|..++.+.++.|+.++..++...+|+||+..||..++|.
T Consensus 14 l~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 14 LWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 33445566666644 35699999999999999999999999999999999999999999998887
No 62
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=94.71 E-value=0.031 Score=48.70 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=64.5
Q ss_pred CCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhhhcC
Q psy17765 140 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 219 (475)
Q Consensus 140 RagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~Lf~~ 219 (475)
++.|.+.|+||-+---..+ ...++..+..-|+-+++..+.+|.+-+...|+..+++.|++.||.++++.++.|..+++.
T Consensus 26 Kaal~y~V~rIvke~gaer-~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~ 104 (113)
T 4dra_A 26 KAAVHYTVGCLCEEVALDK-EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITD 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 4668999998865432211 234888888888888888888888888889999999999999999999999999988763
No 63
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=94.58 E-value=0.033 Score=48.12 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=65.0
Q ss_pred CCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhhhc
Q psy17765 140 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 218 (475)
Q Consensus 140 RagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~Lf~ 218 (475)
++.|.+-|+||-+---. ....|++..+..-|+-+++..+.+|.+-+..+|++.+++.|+++||.++++.++.|.+.++
T Consensus 18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 34588888887654322 1235899999999999998889999999999999999999999999999999999987765
No 64
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=94.46 E-value=0.098 Score=43.14 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=57.0
Q ss_pred hhHHHHHHHHhhccC--CCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 34 ESYAIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 34 ~sf~~yI~KVLKQVh--Pd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
-.|+.-++.+-.+.. .+..++++|+.-+..-..+.+..+.+++...+.+.+|.|+.++|||-|.|+-
T Consensus 7 lPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir 75 (82)
T 3nqj_A 7 LPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 75 (82)
T ss_dssp HHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence 446777777766555 3678999999999999999999999999988999999999999999998873
No 65
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=94.40 E-value=0.085 Score=45.02 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=57.6
Q ss_pred chhHHHHHHHHhhccCC---CCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 33 KESYAIYIYKVLKQVHP---DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 33 ~~sf~~yI~KVLKQVhP---d~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
+-.|+--++.+.....+ +..+++.|+.-|..-..+.+..+.+++..++.+.+|.|+.++|||-|.++
T Consensus 30 k~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 30 RMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 44588888888877766 78899999999999999999999999999999999999999999999875
No 66
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=94.36 E-value=0.035 Score=47.92 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=56.1
Q ss_pred HHHHHHHHhhccCC--CCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 36 YAIYIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 36 f~~yI~KVLKQVhP--d~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
.-..+-|+.++.-- +..+|.+++..|..++.+.++.|+.++..++.+.+|+||+..||..|+|..
T Consensus 21 l~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 21 VHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 44456677766632 467999999999999999999999999999999999999999999999873
No 67
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=94.12 E-value=0.1 Score=46.95 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=56.7
Q ss_pred HHHHHhhcc--CCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHHH
Q psy17765 39 YIYKVLKQV--HPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKH 108 (475)
Q Consensus 39 yI~KVLKQV--hPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaKh 108 (475)
.+-|+.+++ ..++.+|.+++..|..++.+.++.|+.++..++...+|+||+..||..++|. -..|..+
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr--n~~L~~~ 93 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR--SNSLLKY 93 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT--SHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh--CHHHHHH
Confidence 344555555 2356799999999999999999999999999999999999999999999998 4455444
No 68
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=93.91 E-value=0.061 Score=46.88 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=55.1
Q ss_pred HHHHHHHhhccC--CCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 37 AIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 37 ~~yI~KVLKQVh--Pd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
--.+.|+++++- .+..+|.+++.-|..++.+.++.|+.++..++...+|+||+..||..++|.
T Consensus 30 ~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 30 HYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 344667776663 246799999999999999999999999999999999999999999999887
No 69
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=93.68 E-value=0.11 Score=46.60 Aligned_cols=62 Identities=10% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHHHhhccCCCC-CcChHHHHHHHHHHHHHHHHHHHHHhhhh-hcCCCCCCChHHHHHHHHH
Q psy17765 37 AIYIYKVLKQVHPDT-GVSSKAMSIMNSFVNDIFERIAAESSRLA-HYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~-~IS~~Am~imns~v~diferIa~EA~~L~-~~~kr~TlT~rdIqtAVrl 99 (475)
...|+|++|.- |+. .||.+|.-+|.--+--++..|+.+|...+ ..++|+||+.+||..||..
T Consensus 22 laRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~ 85 (140)
T 2byk_A 22 LSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK 85 (140)
T ss_dssp -------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred HHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhc
Confidence 56799999986 775 59999999999988888999999999999 9999999999999999974
No 70
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=93.56 E-value=0.14 Score=42.18 Aligned_cols=67 Identities=22% Similarity=0.123 Sum_probs=55.7
Q ss_pred cccchhHHHHHHhhcC------cccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhc
Q psy17765 143 LQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 209 (475)
Q Consensus 143 L~FPVsRi~r~Lke~~------~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~n 209 (475)
|.+|.--|.|+.|+-. ...|+.++|..-|--..|....++.|-+...|.+.++..|.|+||++|.+-
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri 74 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 74 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence 3455555666666532 356999999999999999999999999999999999999999999999763
No 71
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=93.46 E-value=0.011 Score=56.54 Aligned_cols=70 Identities=10% Similarity=-0.073 Sum_probs=55.3
Q ss_pred hhHHHHHHhccccc----cccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 286 VLEEHLENATGLLV----DESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 286 Vfre~l~~~~~l~~----~~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
+|.++|.....+.. .||+|+-+|+++.+.|+..|++.+....++.++..+|.||..+++. +++|..|...
T Consensus 107 ~y~~~l~~~~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~--~~~Y~~Y~~~ 180 (283)
T 3jv3_A 107 IFQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH--MQPYIRFCSC 180 (283)
T ss_dssp HTTHHHHTTCSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHHHGGG--GTHHHHHHHH
T ss_pred HHHhhccccCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccccCCchhHHHHHHHHHHhh--chhHHHHHcC
Confidence 56666654332222 2999999999999999999999998877777889999999887764 7899988654
No 72
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=93.38 E-value=0.18 Score=41.07 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=55.4
Q ss_pred cccchhHHHHHHhhc----CcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHh
Q psy17765 143 LQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 208 (475)
Q Consensus 143 L~FPVsRi~r~Lke~----~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~ 208 (475)
|.+|.-=|.|++|+- .-..|+.++|..-|--..|....++.|-+...|.+.++..|.|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 455666666666653 124799999999999999999999999999999999999999999999975
No 73
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=93.34 E-value=0.12 Score=45.63 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=45.7
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 52 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 52 ~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
.||..+.+-+...+.+.++.|+.+|..++.+.+|+|+|..||.-|++.
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 499999999999999999999999999999999999999999998876
No 74
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=93.15 E-value=0.089 Score=47.40 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=64.4
Q ss_pred CCCcccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhhhcC
Q psy17765 140 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 219 (475)
Q Consensus 140 RagL~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~Lf~~ 219 (475)
++.|.+-|++|-.-.-. .....++..+..-|+-+++..+.+|..=+-.+|++.+++.|++.||.++++.++.|..++..
T Consensus 18 KaAl~y~VgkIvee~~~-~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAE-DKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 35588888887654311 12346888888888888888888888888889999999999999999999999999988764
No 75
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=92.89 E-value=0.012 Score=60.01 Aligned_cols=68 Identities=9% Similarity=-0.120 Sum_probs=51.2
Q ss_pred hhHHHHHHhcccccc-----ccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 286 VLEEHLENATGLLVD-----ESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 286 Vfre~l~~~~~l~~~-----~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
+|.++|.....++.+ ||+||-+|+++...|+..|++.++- .+...+.+|.||.++++ .|++|+.|...
T Consensus 66 ~y~~pl~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~--~~~~~~~ig~ifl~~~~--~f~~Y~~Y~~n 138 (402)
T 2dfk_A 66 GYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNN--DDPHLSEIGPCFLEHQD--GFWIYSEYCNN 138 (402)
T ss_dssp HTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCS--SCGGGCCCHHHHHHTTT--GGGHHHHHHHH
T ss_pred HHHHHHHhCcCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHcc--CCCchhhHHHHHHHHHh--hhHHHHHHHHh
Confidence 566666554444443 9999999999999999999887643 12224689999999875 58999999765
No 76
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=92.75 E-value=0.21 Score=45.01 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=54.6
Q ss_pred HHHHHHHHhhccC--CCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 36 YAIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 36 f~~yI~KVLKQVh--Pd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
|+-.++.+-.+.. -++.++.+|+..|..-..+.+..|.+++..++.+.++.||..+|||-|.++-
T Consensus 67 F~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 67 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp HHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 6666666655444 3678999999999999999999999999988899999999999999999873
No 77
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=92.63 E-value=0.21 Score=45.75 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=54.7
Q ss_pred HHHHHHHHhhccCC--CCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 36 YAIYIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 36 f~~yI~KVLKQVhP--d~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
|+-.++.+..+..+ ++.++.+|+..|..-..+.+..|.++|..++...++.||..+|||-|.++
T Consensus 83 F~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 83 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 66666666655553 57899999999999999999999999988888899999999999999988
No 78
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=92.45 E-value=0.2 Score=45.10 Aligned_cols=69 Identities=22% Similarity=0.115 Sum_probs=60.3
Q ss_pred CCcccchhHHHHHHhhcC------cccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhc
Q psy17765 141 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 209 (475)
Q Consensus 141 agL~FPVsRi~r~Lke~~------~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~n 209 (475)
.+|.+|.--|.|+++|-. ...|+.++|..-|--+.|....++.|-+...|.+.++..|.|+||++|.+=
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArri 132 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 132 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHh
Confidence 468899888888888733 257999999999999999999999999999999999999999999999763
No 79
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=92.45 E-value=0.17 Score=46.40 Aligned_cols=72 Identities=21% Similarity=0.092 Sum_probs=61.8
Q ss_pred CCcccchhHHHHHHhhcC------cccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhccHH
Q psy17765 141 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 212 (475)
Q Consensus 141 agL~FPVsRi~r~Lke~~------~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~nD~E 212 (475)
.+|.+|.--|.|+++|-. ...|+.++|..-|--+.|..+.++.|-|...|...++..|.|+||++|.+=-.|
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 468999999999988732 246999999999999999999999999988899999999999999999864333
No 80
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=92.43 E-value=0.019 Score=57.89 Aligned_cols=70 Identities=9% Similarity=-0.121 Sum_probs=55.7
Q ss_pred hhHHHHHHhccccc-----cccccccccccccccccCCcchhhhhccccCCCCcccchhhhccc---cccc-hhhhhhhc
Q psy17765 286 VLEEHLENATGLLV-----DESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSS---LTTA-DLLSITMA 356 (475)
Q Consensus 286 Vfre~l~~~~~l~~-----~~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~---~~~~-~~~~~~m~ 356 (475)
+|.++|.... ++. .||+|+-+|+++. .++..|++.++..+++...+.+|.||.++.+ .+.| ++|+.|..
T Consensus 49 ~f~~~l~~~~-~l~~~~~~~iF~ni~~I~~~h-~fL~~l~~~~~~~~~~~~~~~ig~~fl~~~~~~~~~~f~~~Y~~Y~~ 126 (385)
T 1txd_A 49 VFYQRVSREG-ILSPSELRKIFSNLEDILQLH-IGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCS 126 (385)
T ss_dssp HTHHHHHHHT-CSCHHHHHHHHTTHHHHHHHH-HHHHHHHHHHHTTCTTCCCCCCHHHHHHHHSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC-CCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHhhcCCCcccHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 7788887633 333 2999999999999 9999999988776776678899999999875 3566 89998866
Q ss_pred c
Q psy17765 357 A 357 (475)
Q Consensus 357 ~ 357 (475)
.
T Consensus 127 n 127 (385)
T 1txd_A 127 N 127 (385)
T ss_dssp T
T ss_pred c
Confidence 5
No 81
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=92.37 E-value=0.024 Score=58.68 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhHHHHHHhccc----cccccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhccCCcC
Q psy17765 286 VLEEHLENATGL----LVDESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAAGKSS 361 (475)
Q Consensus 286 Vfre~l~~~~~l----~~~~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~~~~~ 361 (475)
+|.++|.....+ ...||+|+-+|+++.+.|+..|++.+....++.++..+|.||..+++ .+++|..|......+
T Consensus 52 ~y~~~l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~--~~~~Y~~Y~~~~~~a 129 (510)
T 3jzy_A 52 VFQKRMAESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELS--HMQAYIRFCSCQLNG 129 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhcCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHhH--HHHHHHHHHHhHHHH
Confidence 666777653222 22399999999999999999999998877777778899999988764 578999887653211
Q ss_pred ccchhccccccccc---cccCCccCc--------------CCCccceeehhhhhcc---ccCCCCCchHHHHHHhhHHHH
Q psy17765 362 GKAVKKAGKAQKNI---TKSDKKKKP--------------RRKESYAIYIYKVLKQ---VHPDTGVSSKAMSIMNSFVND 421 (475)
Q Consensus 362 ~k~~~~~~~~~~~~---~~~~~k~~~--------------~~~esy~~Yi~kvLkq---vhp~~giS~kam~imnsfv~D 421 (475)
...-....+..+.- -+....... .|-..|...+-.+||. -|||..-=.+|...|..++..
T Consensus 130 ~~~l~~~~~~~~~f~~~~~~~~~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~ 209 (510)
T 3jzy_A 130 AALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQ 209 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhChhhhhhcCcHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 11111100000000 000000011 1223455555555664 378877778888888877765
Q ss_pred HHh
Q psy17765 422 IFE 424 (475)
Q Consensus 422 ife 424 (475)
+=+
T Consensus 210 in~ 212 (510)
T 3jzy_A 210 VNE 212 (510)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 82
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=92.13 E-value=0.22 Score=42.50 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCcccchhHHHHHHhhcC--c-----ccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHh
Q psy17765 141 AGLQFPVGRIHRLLRKGN--Y-----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 208 (475)
Q Consensus 141 agL~FPVsRi~r~Lke~~--~-----~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~ 208 (475)
.+|.+|.--|.|+.++-. + ..|+.++|..-|--..|....++.|-+...|...++..|.|.||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 368999999999888742 1 4799999999999999999999999999999999999999999999974
No 83
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=91.52 E-value=0.36 Score=43.26 Aligned_cols=67 Identities=25% Similarity=0.250 Sum_probs=59.8
Q ss_pred CcccchhHHHHHHhhcC----cccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHh
Q psy17765 142 GLQFPVGRIHRLLRKGN----YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 208 (475)
Q Consensus 142 gL~FPVsRi~r~Lke~~----~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~ 208 (475)
+|.+|.--|.|++++-. -..|+.++|..-|.-..|....++.|-+...|.+.++..|.|.||++|.+
T Consensus 60 ~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp SCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 58999999999888741 24799999999999999999999999999999999999999999999975
No 84
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=91.27 E-value=0.036 Score=54.91 Aligned_cols=67 Identities=4% Similarity=-0.157 Sum_probs=52.5
Q ss_pred hhHHHHHHhccccc----cccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 286 VLEEHLENATGLLV----DESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 286 Vfre~l~~~~~l~~----~~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
+|.++|....-+.. .||+|+-+|+++...|+..|++.+.- +...+.+|.||.++++ .|++|+.|...
T Consensus 44 ~y~~~l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~---~~~~~~ig~~f~~~~~--~~~~Y~~Y~~n 114 (346)
T 2z0q_A 44 AYHDPMLKLSIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKP---DGSTEHVGPILVGWLP--CLSSYDSYCSN 114 (346)
T ss_dssp HTHHHHHHTTSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCT---TSCCSCCHHHHHHHGG--GGGHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHhcc---CCccchHHHHHHHHhh--HHHHHHHHHHC
Confidence 67777776532222 29999999999999999999987653 3457889999999876 47899999765
No 85
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=89.88 E-value=0.63 Score=38.75 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=53.5
Q ss_pred ccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcC-CcccchhHHHHHHh
Q psy17765 144 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIR 208 (475)
Q Consensus 144 ~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k-~~rItP~hI~lAI~ 208 (475)
.||=..+.|+++. ...+.++....+-++++---++.||.|.|.......+ ...|.|.||..|.+
T Consensus 16 ~f~k~~vKrl~~~-~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQS-ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 4667778888864 5678999999999999999999999999988876553 55899999998865
No 86
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=89.79 E-value=0.49 Score=45.90 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=46.8
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHh
Q psy17765 52 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 100 (475)
Q Consensus 52 ~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrll 100 (475)
.||..+.+-+...+..+++.|+.+|..++.+.+|+|+|+.||.-|++..
T Consensus 178 RIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 178 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 4999999999999999999999999999999999999999999999864
No 87
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=89.73 E-value=0.68 Score=40.73 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=46.6
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHHHHhc
Q psy17765 161 ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 209 (475)
Q Consensus 161 ~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~lAI~n 209 (475)
.||+..+..-+..+||.+..+|+.-|..++...+++.|+..||..|+..
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999999864
No 88
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=89.22 E-value=0.035 Score=55.76 Aligned_cols=71 Identities=15% Similarity=-0.048 Sum_probs=53.3
Q ss_pred hhHHHHHHhccccc----cccccccccccccccccCCcchhhhhcccc----------CCCCcccchhhhccccccchhh
Q psy17765 286 VLEEHLENATGLLV----DESGNTLDSTSTRQTTDGGLGDSLDVVTEY----------FPVPLGASFSESLSSLTTADLL 351 (475)
Q Consensus 286 Vfre~l~~~~~l~~----~~f~n~ld~~e~~~~~~g~leD~le~~~e~----------~~~p~~gs~fe~la~~~~~~~~ 351 (475)
+|.++|....-+.. .||+||-+|+++...|+..|++.++..++. ..++.+|.||.++++ .|++|
T Consensus 36 ~y~~pl~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~~~~~~ig~~f~~~~~--~f~~Y 113 (377)
T 1foe_A 36 RYLKPLQKETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYAD--RFKLY 113 (377)
T ss_dssp HTHHHHHTSSSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSSCGGGCCSGGGGHHHHHHHHHHHHHHTT--GGGGH
T ss_pred HHHHHHHhcCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhHHHHHHHHHHHHHH--HHHHH
Confidence 67788876432222 299999999999999999999988754321 123579999999976 58999
Q ss_pred hhhhccC
Q psy17765 352 SITMAAG 358 (475)
Q Consensus 352 ~~~m~~~ 358 (475)
+.|....
T Consensus 114 ~~Y~~n~ 120 (377)
T 1foe_A 114 SAFCASH 120 (377)
T ss_dssp HHHHHHT
T ss_pred HHHHHhH
Confidence 9997653
No 89
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=89.10 E-value=0.045 Score=56.59 Aligned_cols=68 Identities=9% Similarity=-0.033 Sum_probs=51.4
Q ss_pred hhHHHHHHhcccccc-----ccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 286 VLEEHLENATGLLVD-----ESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 286 Vfre~l~~~~~l~~~-----~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
+|.++|.....++.+ ||+||-+|+++...|+..|++.++- ++.....+|.||..+++ .|++|+.|...
T Consensus 143 ~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~--~~~~~~~ig~~fl~~~~--~f~~Y~~Y~~n 215 (466)
T 2pz1_A 143 GYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNR--ERPHLSELGACFLEHQA--DFQIYSEYCNN 215 (466)
T ss_dssp HTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCS--SCGGGCCCHHHHHHTHH--HHTTHHHHHHH
T ss_pred HHHHHHhhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcc--CCCccchHHHHHHHhhH--HHHHHHHHHHh
Confidence 556666554445543 9999999999999999999887653 22224689999999874 68999999765
No 90
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=86.79 E-value=0.33 Score=39.43 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=49.1
Q ss_pred hhhhhccccCCCCCchHHHHHHhhHHHHHHhHhHHhhhcccccCCCcCCCCCchh
Q psy17765 394 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITKDLCP 448 (475)
Q Consensus 394 i~kvLkqvhp~~giS~kam~imnsfv~Diferia~Eas~L~~~~kr~Tltsr~~~ 448 (475)
+-..++||-|...|...+...+-.+.+|.-+.+..-|++||++.+-.||..++++
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvq 65 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQ 65 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 5567899999999999999988888888888889999999999999999998864
No 91
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=85.90 E-value=0.086 Score=53.50 Aligned_cols=63 Identities=11% Similarity=-0.127 Sum_probs=50.6
Q ss_pred hhHHHHHHhccccc-----cccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 286 VLEEHLENATGLLV-----DESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 286 Vfre~l~~~~~l~~-----~~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
+|.++|.. .+. .||+||-+|+++...|+..|++.++. ...+.+|.||.++++ .|++|+.|...
T Consensus 50 ~f~~~l~~---~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~----~~~~~ig~~f~~~~~--~~~~Y~~Y~~n 117 (406)
T 2vrw_B 50 HFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFLKELKDALAG----PGATTLYQVFIKYKE--RFLVYGRYCSQ 117 (406)
T ss_dssp HTHHHHTT---TSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS----GGGTTHHHHHHHHTT--GGGHHHHHHHH
T ss_pred HHHHHHHH---hCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcC----CCccHHHHHHHHHHH--HHHHHHHHHHh
Confidence 66677754 233 29999999999999999999998874 235789999999976 48999999765
No 92
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=85.63 E-value=0.078 Score=49.05 Aligned_cols=135 Identities=15% Similarity=0.070 Sum_probs=79.6
Q ss_pred hhHHHHHHhccc----cccccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccch-hhhhhhccCCc
Q psy17765 286 VLEEHLENATGL----LVDESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTAD-LLSITMAAGKS 360 (475)
Q Consensus 286 Vfre~l~~~~~l----~~~~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~-~~~~~m~~~~~ 360 (475)
+|.++|....-+ ...+|+|+-+|+++...|+..|++.++. ......+|.||.++++ .|. +|+.|......
T Consensus 38 ~y~~pl~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~---~~~~~~ig~~f~~~~~--~f~~~Y~~Y~~n~~~ 112 (209)
T 1by1_A 38 TYLRPLQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKL---PEAQQRVGGCFLNLMP--QMKTLYLTYCANHPS 112 (209)
T ss_dssp HHHHHHTTTSSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHT---TCSSCCHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcC---CcchhhHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 677777653212 2239999999999999999999998764 2346789999999875 474 99888665311
Q ss_pred Cccchhccc----cccccc-cccCCc--------cCcCCCccceeehhhhhcc---ccCCCCCchHHHHHHhhHHHHHHh
Q psy17765 361 SGKAVKKAG----KAQKNI-TKSDKK--------KKPRRKESYAIYIYKVLKQ---VHPDTGVSSKAMSIMNSFVNDIFE 424 (475)
Q Consensus 361 ~~k~~~~~~----~~~~~~-~~~~~k--------~~~~~~esy~~Yi~kvLkq---vhp~~giS~kam~imnsfv~Dife 424 (475)
+...-.+.. +--+.. ....++ +--.|--.|...+-.+||. -|||..-=.+|...|..+++.|=|
T Consensus 113 a~~~l~~~~~~f~~fl~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~h~d~~~l~~Al~~i~~v~~~iNe 192 (209)
T 1by1_A 113 AVNVLTEHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQE 192 (209)
T ss_dssp HHHHHHHHTTTHHHHTTTTCCCSSTTTHHHHHTTSTTTGGGTHHHHHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHhcCCCCCcCCHHHHhhHHHHHHhHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 111100000 000000 000000 0011233455555556664 377777778888888888776654
Q ss_pred H
Q psy17765 425 R 425 (475)
Q Consensus 425 r 425 (475)
.
T Consensus 193 ~ 193 (209)
T 1by1_A 193 V 193 (209)
T ss_dssp H
T ss_pred H
Confidence 3
No 93
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=85.47 E-value=0.14 Score=50.06 Aligned_cols=64 Identities=5% Similarity=-0.137 Sum_probs=49.1
Q ss_pred hhHHHHHHhcc-cc-------ccccccccccccccc-cccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhc
Q psy17765 286 VLEEHLENATG-LL-------VDESGNTLDSTSTRQ-TTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMA 356 (475)
Q Consensus 286 Vfre~l~~~~~-l~-------~~~f~n~ld~~e~~~-~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~ 356 (475)
+|.++|..... +. ..||+|+-+|+++.. .|+..|++..+. .+.+|.||..+++ .|++|+.|..
T Consensus 34 ~y~~~l~~~~~~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~~------~~~ig~~f~~~~~--~~~~Y~~Y~~ 105 (311)
T 1nty_A 34 TYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQL------PEDVGHCFVTWAD--KFQMYVTYCK 105 (311)
T ss_dssp HHHHHHHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTTC------GGGTHHHHHHTTT--TTHHHHHHHH
T ss_pred HHHHHHHhhccCCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHH--HhHHHHHHHh
Confidence 78888876332 11 239999999999998 499988886532 3689999999886 5799998866
Q ss_pred c
Q psy17765 357 A 357 (475)
Q Consensus 357 ~ 357 (475)
.
T Consensus 106 n 106 (311)
T 1nty_A 106 N 106 (311)
T ss_dssp H
T ss_pred C
Confidence 5
No 94
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=84.94 E-value=0.12 Score=51.52 Aligned_cols=70 Identities=3% Similarity=-0.195 Sum_probs=50.0
Q ss_pred hhHHHHHHhccccc----cccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccc---cc-hhhhhhhcc
Q psy17765 286 VLEEHLENATGLLV----DESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLT---TA-DLLSITMAA 357 (475)
Q Consensus 286 Vfre~l~~~~~l~~----~~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~---~~-~~~~~~m~~ 357 (475)
+|.++|....-+.. .||+|+-+|+++.+.++..|++.+. +.+..++.+|.||...++-. .| ++|+.|...
T Consensus 52 ~y~~~l~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~--~~~~~~~~ig~~fl~~~~~~~~~~~~~~Y~~Y~~n 129 (377)
T 3p6a_A 52 LFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQ--ESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSR 129 (377)
T ss_dssp HTHHHHHHHTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHH--HC--CCCCCHHHHHHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhcCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHh--ccCCCCCcHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 67777765432222 2999999999999999988887654 23345789999999987642 23 788888665
No 95
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=83.93 E-value=2.6 Score=34.54 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=55.8
Q ss_pred CcccchhHHHHHHhhcC--cccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHH
Q psy17765 142 GLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 205 (475)
Q Consensus 142 gL~FPVsRi~r~Lke~~--~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~l 205 (475)
+..||..-|+++|+..- -..||+..|-.-++..|+-++.|.+..|...|+..+...|..+||+.
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 46899999999998732 23699999999999999999999999999998888888999999986
No 96
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=83.64 E-value=3.3 Score=34.23 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=55.2
Q ss_pred CCCcccchhHHHHHHhhcC--cccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHHH
Q psy17765 140 RAGLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 205 (475)
Q Consensus 140 RagL~FPVsRi~r~Lke~~--~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~l 205 (475)
.++..||..-|.|+|+..- -..||+..|---++..|+-++.|.+-.|...|...+...|..+||+.
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 4578999999999999432 23699999999999999999999999999888877777899999985
No 97
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=83.29 E-value=0.17 Score=50.53 Aligned_cols=65 Identities=9% Similarity=-0.120 Sum_probs=50.7
Q ss_pred hhHHHHHHhc--ccc----cccccccccccccccc-ccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhccC
Q psy17765 286 VLEEHLENAT--GLL----VDESGNTLDSTSTRQT-TDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAAG 358 (475)
Q Consensus 286 Vfre~l~~~~--~l~----~~~f~n~ld~~e~~~~-~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~~ 358 (475)
+|.++|.... ..+ ..||+||-+|+++... |+..|++.++- .+.+|.||.++++ .|++|+.|....
T Consensus 37 ~y~~~l~~~~~p~~l~~~~~~iF~ni~~I~~~h~~~fl~~L~~~~~~------~~~ig~~fl~~~~--~f~~Y~~Y~~n~ 108 (354)
T 2rgn_B 37 GYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKD------PDWLAQLFIKHER--RLHMYVVYCQNK 108 (354)
T ss_dssp THHHHHHHHCCCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHHHSC------GGGHHHHHHHTTT--TTHHHHHHHHTS
T ss_pred HHHHHHHhcCCchhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHcC------HHHHHHHHHHhHH--HHHHHHHHHhCc
Confidence 6788887642 112 2399999999999998 89999887642 3689999999976 589999997764
No 98
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=82.76 E-value=0.16 Score=51.81 Aligned_cols=52 Identities=10% Similarity=-0.160 Sum_probs=45.0
Q ss_pred ccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 301 ESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 301 ~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
||+||.+|+++.+.|+..|++.++.- ...+.+|.||..+++. +++|..|...
T Consensus 75 iF~ni~~I~~~h~~fL~~L~~~~~~~---~~~~~ig~ifl~~~~~--~~~Y~~Y~~n 126 (434)
T 3mpx_A 75 GLSELPAIHDLHQGILEELEERLSNW---ESQQKVADVFLAREQG--FDHHATHILQ 126 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---TTCCCCTHHHHTTTTT--HHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhc---cCcccHHHHHHHhhHH--HHHHHHHHHh
Confidence 99999999999999999999988753 3468999999999875 8899988664
No 99
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=82.02 E-value=0.21 Score=49.65 Aligned_cols=68 Identities=4% Similarity=-0.094 Sum_probs=50.4
Q ss_pred hhHHHHHHhccccc-----cccccccccccccccccCCcchhhhhccccCCCCcccchhhhccc----cccchhhhhhhc
Q psy17765 286 VLEEHLENATGLLV-----DESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSS----LTTADLLSITMA 356 (475)
Q Consensus 286 Vfre~l~~~~~l~~-----~~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~----~~~~~~~~~~m~ 356 (475)
+|.++|.... ++. .||+|+-+|+++...++..|++.++ ++..++.+|.||.+... ..-+++|..|..
T Consensus 46 ~f~~~l~~~~-~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~---~~~~~~~ig~~f~~~~~~~~~~~~~~~Y~~Y~~ 121 (368)
T 1xcg_A 46 IFYQRMKKEN-LMPREELARLFPNLPELIEIHNSWCEAMKKLRE---EGPIIKEISDLMLARFDGPAREELQQVAAQFCS 121 (368)
T ss_dssp HTHHHHHHTT-SSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHH---TCSSCCCCHHHHHHHHSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh---cCCCcCcHHHHHHHHccchhHHHHHHHHHHHHh
Confidence 6777777643 332 2999999999999999998887654 44456789999988543 124788888865
Q ss_pred c
Q psy17765 357 A 357 (475)
Q Consensus 357 ~ 357 (475)
.
T Consensus 122 ~ 122 (368)
T 1xcg_A 122 Y 122 (368)
T ss_dssp T
T ss_pred h
Confidence 4
No 100
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=80.28 E-value=0.24 Score=52.71 Aligned_cols=69 Identities=3% Similarity=-0.195 Sum_probs=48.4
Q ss_pred hhHHHHHHhcccccc-----ccccccccccccccccCCcchhhhhccccCCCCcccchhhhcccc---ccc-hhhhhhhc
Q psy17765 286 VLEEHLENATGLLVD-----ESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSL---TTA-DLLSITMA 356 (475)
Q Consensus 286 Vfre~l~~~~~l~~~-----~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~---~~~-~~~~~~m~ 356 (475)
+|.++|.... ++.+ ||+||.+|+++.+.|+..|++.+. +.+..++.+|.||..+++- +.| ++|..|..
T Consensus 205 ~y~~pl~~~~-~l~~~~~~~IF~nie~I~~~h~~fL~~L~~~~~--~~~~~~~~Igdifl~~~~~~~~~~f~~~Y~~Y~~ 281 (536)
T 3odw_A 205 LFFQPMAECL-FFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQ--ESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS 281 (536)
T ss_dssp HTHHHHHHTT-SSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHH--TC---CCCCHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--hcCcccccHHHHHHHHcchhhhHHHHHHHHHHHh
Confidence 5666666532 2332 999999999999999988887543 2234578999999998763 224 78888876
Q ss_pred c
Q psy17765 357 A 357 (475)
Q Consensus 357 ~ 357 (475)
.
T Consensus 282 n 282 (536)
T 3odw_A 282 R 282 (536)
T ss_dssp T
T ss_pred h
Confidence 5
No 101
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=79.93 E-value=0.14 Score=51.14 Aligned_cols=49 Identities=10% Similarity=-0.084 Sum_probs=41.6
Q ss_pred ccccccccccccc-cccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 301 ESGNTLDSTSTRQ-TTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 301 ~f~n~ld~~e~~~-~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
||+||-+|+++.. .|+..|++.++- .+.+|.||.++++ .|++|+.|...
T Consensus 61 iF~ni~~I~~~h~~~fl~~Le~~~~~------~~~ig~~fl~~~~--~f~~Y~~Y~~n 110 (353)
T 1kz7_A 61 LFGNMEEIYHFHNRIFLRELESCIDC------PELVGRCFLERME--EFQIYEKYCQN 110 (353)
T ss_dssp HHTTHHHHHHHHHHTHHHHHHTTTTC------GGGHHHHHHTTTT--GGGHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHhhH--HHHHHHHHHhC
Confidence 9999999999985 899999888752 2689999999875 68999999765
No 102
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=77.98 E-value=0.37 Score=48.80 Aligned_cols=68 Identities=4% Similarity=-0.116 Sum_probs=49.5
Q ss_pred hhHHHHHHhcccccc-----ccccccccccccccccCCcchhhhhccccCCCCcccchhhhcccc----ccchhhhhhhc
Q psy17765 286 VLEEHLENATGLLVD-----ESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSL----TTADLLSITMA 356 (475)
Q Consensus 286 Vfre~l~~~~~l~~~-----~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~----~~~~~~~~~m~ 356 (475)
+|.++|... .++.+ ||+|+.+|+++.+.|+..|++.+ +++...+.+|.||.+..+. .-+++|..|..
T Consensus 88 ~y~~~l~~~-~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~---~~~~~~~~ig~ifl~~~~~~~~~~~~~~Y~~Y~~ 163 (418)
T 3t06_A 88 IFYQRMKKE-NLMPREELARLFPNLPELIEIHNSWCEAMKKLR---EEGPIIKEISDLMLARFDGPAREELQQVAAQFCS 163 (418)
T ss_dssp HTHHHHHHT-TSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHG---GGCSSCCCCHHHHHHHHSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-CCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHH---hcCCCcCcHHHHHHHhcchhhhHHHhhhhHHHhh
Confidence 666777653 33332 99999999999999998888765 3455678999999885432 23578888866
Q ss_pred c
Q psy17765 357 A 357 (475)
Q Consensus 357 ~ 357 (475)
.
T Consensus 164 n 164 (418)
T 3t06_A 164 Y 164 (418)
T ss_dssp T
T ss_pred h
Confidence 4
No 103
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=74.98 E-value=0.4 Score=51.28 Aligned_cols=66 Identities=6% Similarity=-0.206 Sum_probs=50.5
Q ss_pred hhHHHHHHh--ccccccccccccccccccccccCCcchhhhhccccCCCCcccchhhhccccccchhhhhhhcc
Q psy17765 286 VLEEHLENA--TGLLVDESGNTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGASFSESLSSLTTADLLSITMAA 357 (475)
Q Consensus 286 Vfre~l~~~--~~l~~~~f~n~ld~~e~~~~~~g~leD~le~~~e~~~~p~~gs~fe~la~~~~~~~~~~~m~~ 357 (475)
+|.++|... ......||+|+-+|+++.+.|+..|++.++- ...+.+|.||..+++ .|++|..|...
T Consensus 222 ~y~~~L~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~----~~~~~ig~if~~~~~--~f~~Y~~Y~~n 289 (587)
T 3ky9_A 222 HFLKPLQRFLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGT----PGAANLYQVFIKYKE--RFLVYGRYCSQ 289 (587)
T ss_dssp HTHHHHHTTSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHS----STTCSHHHHHHHTTT--GGGHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhc----cCccHHHHHHHHHHH--hcchHHHHHhC
Confidence 566666641 1112239999999999999999999988764 246889999999986 47999999765
No 104
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=69.91 E-value=4.6 Score=34.38 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=36.1
Q ss_pred HHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhhhcC
Q psy17765 179 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 219 (475)
Q Consensus 179 taEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~Lf~~ 219 (475)
+.++|+.|-+.|+..++..|+|+||-+|+-.+++...+|..
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~ 46 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHH
Confidence 35789999999999999999999999999988887777764
No 105
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=59.38 E-value=8 Score=32.98 Aligned_cols=39 Identities=31% Similarity=0.296 Sum_probs=32.7
Q ss_pred HHHHHHHhHHHHhcCCcccchhHHHHHHhccH--HHHhhhc
Q psy17765 180 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 218 (475)
Q Consensus 180 aEILELAgn~A~~~k~~rItP~hI~lAI~nD~--EL~~Lf~ 218 (475)
.++|+.|-+.|...++..|+|+||-+|+-.++ ....++.
T Consensus 11 ~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (148)
T 1khy_A 11 QLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLT 51 (148)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHH
Confidence 57899999999999999999999999998766 3455554
No 106
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=58.36 E-value=32 Score=28.40 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=50.7
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CCCCCChHHHHHHHHHh
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYN-KRSTITSREIQTAVRLL 100 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~-kr~TlT~rdIqtAVrll 100 (475)
..-|+|+..++. +.+++....-+|..+-.-+.-.|.++|..+.... ...+|.++.|..|.|.+
T Consensus 19 k~~vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 19 KAAIKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp HHHHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 345677777764 6778898999999888888889999988888643 46689999999999986
No 107
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=58.13 E-value=6.1 Score=34.20 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=33.3
Q ss_pred HHHHHHHHhHHHHhcCCcccchhHHHHHHhccH--HHHhhhc
Q psy17765 179 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 218 (475)
Q Consensus 179 taEILELAgn~A~~~k~~rItP~hI~lAI~nD~--EL~~Lf~ 218 (475)
+.++|+.|.+.|+..++..|+|+||-+|+-.++ ....++.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 367899999999999999999999999998764 3555654
No 108
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=57.64 E-value=7.4 Score=33.36 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=33.4
Q ss_pred HHHHHHHHhHHHHhcCCcccchhHHHHHHhccHH--HHhhhc
Q psy17765 179 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 218 (475)
Q Consensus 179 taEILELAgn~A~~~k~~rItP~hI~lAI~nD~E--L~~Lf~ 218 (475)
+.++|+.|-+.|...++..|+|+||-+|+-.+++ ...++.
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 3578899999999999999999999999976654 556665
No 109
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=56.29 E-value=9.9 Score=32.80 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=34.0
Q ss_pred HHHHHHHHhHHHHhcCCcccchhHHHHHHhcc--HHHHhhhcC
Q psy17765 179 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND--EELNKLLSG 219 (475)
Q Consensus 179 taEILELAgn~A~~~k~~rItP~hI~lAI~nD--~EL~~Lf~~ 219 (475)
+.++|+.|.+.|+..++..|+|+||-+|+-.| .....++..
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~ 53 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALES 53 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHH
Confidence 35789999999999999999999999999865 456666653
No 110
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=51.51 E-value=46 Score=27.32 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=39.5
Q ss_pred HHHHHHhhccC--CCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHH
Q psy17765 38 IYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 97 (475)
Q Consensus 38 ~yI~KVLKQVh--Pd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAV 97 (475)
.-|.|+|++-. +++.||.+|+..+..++.=+...-...|..-+......+++..|++.-.
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 45888888775 5688999999887776644443333333434444456678998887633
No 111
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=47.64 E-value=24 Score=27.48 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcH
Q psy17765 69 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 103 (475)
Q Consensus 69 ferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPg 103 (475)
+..++.||...+-...+.++|..|++.|++.+-|+
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 56788899998888778899999999999999886
No 112
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=47.17 E-value=39 Score=27.45 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=37.2
Q ss_pred HHHHHHhhccCC--CCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHH
Q psy17765 38 IYIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTA 96 (475)
Q Consensus 38 ~yI~KVLKQVhP--d~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtA 96 (475)
.-|.|+|++... ++.|+++|+..+..++.-+...-...|..-+.......+...|++.-
T Consensus 12 ~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 12 ETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp HHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 457888888766 57899999987666653333333333333333445667888888763
No 113
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=47.13 E-value=14 Score=33.55 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHHHHHHHHHH---HHHHHHHhHHHHhcCCcccchhHHHHHHhccH--HHHhhhcC
Q psy17765 169 VYLAAVMEYLA---AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLSG 219 (475)
Q Consensus 169 VYLaAVLEYLt---aEILELAgn~A~~~k~~rItP~hI~lAI~nD~--EL~~Lf~~ 219 (475)
+.+..+++-++ .++|+.|.+.|+..+...|+|+||-+|+-.++ ....++..
T Consensus 16 ~~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~ 71 (171)
T 3zri_A 16 IELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQ 71 (171)
T ss_dssp CCHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHH
T ss_pred hhHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHH
Confidence 34555566554 56899999999999999999999999998764 45566653
No 114
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=45.23 E-value=16 Score=31.55 Aligned_cols=40 Identities=38% Similarity=0.479 Sum_probs=32.5
Q ss_pred HHHHHHHHhHHHHhcCCcccchhHHHHHHhccHH--HHhhhc
Q psy17765 179 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 218 (475)
Q Consensus 179 taEILELAgn~A~~~k~~rItP~hI~lAI~nD~E--L~~Lf~ 218 (475)
+..+|+.|...|+..+...|+++||-+|+-.|++ ...+|.
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 3567888999999999999999999999986653 556665
No 115
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=44.45 E-value=20 Score=30.88 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=32.3
Q ss_pred HHHHHHHhHHHHhcCCcccchhHHHHHHhccH--HHHhhhc
Q psy17765 180 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 218 (475)
Q Consensus 180 aEILELAgn~A~~~k~~rItP~hI~lAI~nD~--EL~~Lf~ 218 (475)
..+|+.|...|+..+...|+++||-+|+-.|+ ....+|+
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 46788899999999999999999999998654 4666665
No 116
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=42.68 E-value=20 Score=28.72 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHH
Q psy17765 69 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 107 (475)
Q Consensus 69 ferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaK 107 (475)
+..|+.||+..+.......+|..|++.|++.+.||.-.+
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~ 78 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKF 78 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccc
Confidence 567888888888776778899999999999998875443
No 117
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=40.73 E-value=20 Score=28.04 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHH
Q psy17765 69 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 105 (475)
Q Consensus 69 ferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeL 105 (475)
+..++.||...+-...+..+|..|++.|++.+.++..
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4667788888887777788999999999999876543
No 118
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=38.41 E-value=19 Score=28.90 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcH
Q psy17765 69 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 103 (475)
Q Consensus 69 ferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPg 103 (475)
++.|+.||...+-......+|..|++.|+..+.|+
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 56688888888877777889999999999998875
No 119
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=35.84 E-value=42 Score=38.55 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=48.8
Q ss_pred HHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 37 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 37 ~~yI~KVLKQVhPd~~IS~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
...|+|.||..+ .-.|+..|.-+|...+..+...|...|+.-++.+++..||+++||.|++-
T Consensus 107 v~~~~~~l~~~~-~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 107 VEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp HHHHHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred HHHHHHHhhccc-ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 467899994443 44788888888877777777777777777777889999999999999976
No 120
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=34.77 E-value=37 Score=29.17 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHHHHHHHh
Q psy17765 55 SKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG 113 (475)
Q Consensus 55 ~~Am~imns~v~diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaKhAvseG 113 (475)
.+-++.+..|=.+.+++|..|.... +-||+..|-+..+ +-|.||+-|+.+-
T Consensus 34 kdk~nn~Vl~Dk~t~dkl~KEVpk~------KlITpsvlseRlk--I~gSLAR~aLreL 84 (108)
T 3iz6_V 34 KEKVNNSVLFDKATYDKLLSEVPKY------KQITPSVLSERLR--INGSLARQAIKDL 84 (108)
T ss_dssp SHHHHSHHHHSSHHHHHHHHHHHHH------SSEEEHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHhcCcEeECHHHHHHHHHHccCC------eEEeHHHHHhhhc--ccHHHHHHHHHHH
Confidence 4455555566677899999886552 3478888855544 5889999988775
No 121
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=33.58 E-value=34 Score=28.84 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=32.1
Q ss_pred HHHHHHHHhHHHHhcCCcccchhHHHHHHhccHH--HHhhhc
Q psy17765 179 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 218 (475)
Q Consensus 179 taEILELAgn~A~~~k~~rItP~hI~lAI~nD~E--L~~Lf~ 218 (475)
+..+|+.|..+|+..+...|+++||-+|+-.+++ ...++.
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 3567889999999989999999999999987653 445554
No 122
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=33.04 E-value=62 Score=30.73 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=44.6
Q ss_pred CCCCcChHHHHHHHHHHH-------HHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHH
Q psy17765 49 PDTGVSSKAMSIMNSFVN-------DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 105 (475)
Q Consensus 49 Pd~~IS~~Am~imns~v~-------diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeL 105 (475)
++..++.+++..+..+.. +-+..+++.|..++....+.++|..||..|+..++..-+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 345789999999888765 345677777777777777888999999999999876543
No 123
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=32.62 E-value=50 Score=27.87 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=31.8
Q ss_pred HHHHHHHHhHHHHhcCCcccchhHHHHHHhc-cHHHHhhhc
Q psy17765 179 AAEVLELAGNAARDNKKTRIIPRHLQLAIRN-DEELNKLLS 218 (475)
Q Consensus 179 taEILELAgn~A~~~k~~rItP~hI~lAI~n-D~EL~~Lf~ 218 (475)
+..+|+.|...|+..+...|+++||-+|+-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 4567888989998889999999999999984 444556665
No 124
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=31.07 E-value=43 Score=30.20 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=29.0
Q ss_pred HHHHHHHhHHHH-hcCCcccchhHHHHHHhccH
Q psy17765 180 AEVLELAGNAAR-DNKKTRIIPRHLQLAIRNDE 211 (475)
Q Consensus 180 aEILELAgn~A~-~~k~~rItP~hI~lAI~nD~ 211 (475)
.++|+.|..+|+ ..+...|+++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 467889999999 99999999999999999887
No 125
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=30.85 E-value=34 Score=26.31 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCc
Q psy17765 68 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 102 (475)
Q Consensus 68 iferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLP 102 (475)
=+..++.||...+....+..+|..|++.|++.++.
T Consensus 41 Di~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 41 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 35678888888888778889999999999988754
No 126
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=29.45 E-value=34 Score=29.09 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=28.8
Q ss_pred HHHHHHHHhHHHHhcCCcccchhHHHHHHhccHH
Q psy17765 179 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 212 (475)
Q Consensus 179 taEILELAgn~A~~~k~~rItP~hI~lAI~nD~E 212 (475)
+..+|+.|...|+..+...|+++||-+|+-.+++
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~ 117 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCC
Confidence 4567889999999999999999999999986543
No 127
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=28.90 E-value=2.1e+02 Score=27.30 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=52.1
Q ss_pred HHHHHHHHhhccCCCCCcChHHHHHHHHHHH----HHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHHHHHHHH
Q psy17765 36 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVN----DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS 111 (475)
Q Consensus 36 f~~yI~KVLKQVhPd~~IS~~Am~imns~v~----diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeLaKhAvs 111 (475)
...++.+.+++. +..++.+++..+-.+.. +-+..++..|..++..+++.++|..+|+.++..++...-....+.
T Consensus 264 ~~~il~~~~~~~--~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~ 341 (368)
T 3uk6_A 264 TKQILRIRCEEE--DVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMK 341 (368)
T ss_dssp HHHHHHHHHHHT--TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 345555555553 35679999888877764 344566777777777778889999999999998887655443333
No 128
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.37 E-value=52 Score=35.68 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHHHHHHhHHHHhcCCcccchhHHHHHHhccHHHHhhhc
Q psy17765 179 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 218 (475)
Q Consensus 179 taEILELAgn~A~~~k~~rItP~hI~lAI~nD~EL~~Lf~ 218 (475)
+.++|+.|-+.|+..++..|+|+||-+|+-.|.+...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4578999999999999999999999999998887766664
No 129
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=26.95 E-value=1e+02 Score=27.92 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=50.1
Q ss_pred ccchhHHHHHHhhcCcccccCCChhHHHHHHHHHHHHHHHHHHhHHHHhcCCcccchhHHH
Q psy17765 144 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 204 (475)
Q Consensus 144 ~FPVsRi~r~Lke~~~~~RI~~~A~VYLaAVLEYLtaEILELAgn~A~~~k~~rItP~hI~ 204 (475)
.+++.++++++++. -+--|..+-.-=+..+.|--..++|..|-..|+.+++.-|-|+|+-
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLP 61 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLP 61 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 57889999999873 3345667777778888899999999999999999999999999975
No 130
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=25.28 E-value=48 Score=35.51 Aligned_cols=63 Identities=21% Similarity=0.358 Sum_probs=45.8
Q ss_pred HHHHHHHHhhccCCCCCcChHHHHHHHHHHHH------------------HHHHHHHHHhhhhhcCCCCCCChHHHHHHH
Q psy17765 36 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVND------------------IFERIAAESSRLAHYNKRSTITSREIQTAV 97 (475)
Q Consensus 36 f~~yI~KVLKQVhPd~~IS~~Am~imns~v~d------------------iferIa~EA~~L~~~~kr~TlT~rdIqtAV 97 (475)
...|+...-+.++|. ++.+|.+.|..+..+ -++.+.+.|..++....+..++..||+.|+
T Consensus 507 l~~~i~~ar~~~~p~--ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 507 LRKYIAYARKYVTPK--ITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp THHHHHHHHHHHCCC--CCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 444555444456774 477888887777543 366777777778888888899999999999
Q ss_pred HHh
Q psy17765 98 RLL 100 (475)
Q Consensus 98 rll 100 (475)
+++
T Consensus 585 ~l~ 587 (595)
T 3f9v_A 585 NIM 587 (595)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=25.07 E-value=2.2e+02 Score=26.81 Aligned_cols=69 Identities=7% Similarity=0.011 Sum_probs=48.8
Q ss_pred HHHHHHHHhhccCCCCCcChHHHHHHHHHHH------HHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHH
Q psy17765 36 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVN------DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 104 (475)
Q Consensus 36 f~~yI~KVLKQVhPd~~IS~~Am~imns~v~------diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPge 104 (475)
...++.+.+.+..+...++.+++..+..+.. +....++..|..++...+..++|..+|+.|+..+.+..
T Consensus 202 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 202 LEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp HHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 4445555555455556788999888877765 22345777777787766778899999999988876543
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=22.96 E-value=2e+02 Score=27.15 Aligned_cols=68 Identities=3% Similarity=0.009 Sum_probs=48.8
Q ss_pred HHHHHHHHhhccCCCCCcChHHHHHHHHHHH------HHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcH
Q psy17765 36 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVN------DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 103 (475)
Q Consensus 36 f~~yI~KVLKQVhPd~~IS~~Am~imns~v~------diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPg 103 (475)
...++.+.+++...+..++.+++..+..+.. +.+..++..|..++...+..++|..+|+.|+..+...
T Consensus 206 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 206 LRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp HHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 4455666655544456788889888888776 4455677777777776677889999999998876443
No 133
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=22.35 E-value=2e+02 Score=30.47 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=46.2
Q ss_pred HHHHHHHHhhccC---CCCCcChHHHHHHHHHHH-------------HHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHH
Q psy17765 36 YAIYIYKVLKQVH---PDTGVSSKAMSIMNSFVN-------------DIFERIAAESSRLAHYNKRSTITSREIQTAVRL 99 (475)
Q Consensus 36 f~~yI~KVLKQVh---Pd~~IS~~Am~imns~v~-------------diferIa~EA~~L~~~~kr~TlT~rdIqtAVrl 99 (475)
...|+..+.++.. +...++.+|+..+-.+.. +-+..|+++|..++....+..++..||+.|++.
T Consensus 295 ~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 295 RRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4444444444332 345789999988777553 445678888888888888889999999999976
No 134
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=21.78 E-value=98 Score=29.44 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=40.9
Q ss_pred CCCcChHHHHHHHHHHH-----------------------HHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHhCcHHH
Q psy17765 50 DTGVSSKAMSIMNSFVN-----------------------DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 105 (475)
Q Consensus 50 d~~IS~~Am~imns~v~-----------------------diferIa~EA~~L~~~~kr~TlT~rdIqtAVrllLPgeL 105 (475)
+..++.+++..+..++. +-...+...|..++....+..++..||+.++..+|.+.+
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 45678888888776653 334456666666777778888999999999999876543
Done!