BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17766
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|F Chain F, Model Of Histone Octamer Tubular Crystals
Length = 125
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/72 (94%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54 ISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTSSK
Sbjct: 114 GTKAVTKYTSSK 125
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/67 (95%), Positives = 65/67 (97%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 59 MSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 118
Query: 61 TKYTSSN 67
TKYTSS
Sbjct: 119 TKYTSSK 125
>pdb|2NQB|D Chain D, Drosophila Nucleosome Structure
pdb|2NQB|H Chain H, Drosophila Nucleosome Structure
Length = 123
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTSSK
Sbjct: 112 GTKAVTKYTSSK 123
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 57 MSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 116
Query: 61 TKYTSS 66
TKYTSS
Sbjct: 117 TKYTSS 122
>pdb|2PYO|D Chain D, Drosophila Nucleosome Core
pdb|2PYO|H Chain H, Drosophila Nucleosome Core
Length = 122
Score = 140 bits (352), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 51 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 110
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTSSK
Sbjct: 111 GTKAVTKYTSSK 122
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 56 MSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 115
Query: 61 TKYTSS 66
TKYTSS
Sbjct: 116 TKYTSS 121
>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|H Chain H, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 125
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54 ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 114 GTKAVTKYTSAK 125
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 65/67 (97%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 59 MSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 118
Query: 61 TKYTSSN 67
TKYTS+
Sbjct: 119 TKYTSAK 125
>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 125
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54 ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 114 GTKAVTKYTSAK 125
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 65/67 (97%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 59 MSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 118
Query: 61 TKYTSSN 67
TKYTS+
Sbjct: 119 TKYTSAK 125
>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|H Chain H, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|3LJA|D Chain D, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|H Chain H, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|D Chain D, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|H Chain H, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3O62|D Chain D, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|H Chain H, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3TU4|D Chain D, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|H Chain H, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|D Chain D, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|H Chain H, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|D Chain D, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|H Chain H, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|D Chain D, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|H Chain H, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|D Chain D, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|H Chain H, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|D Chain D, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|H Chain H, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
Length = 122
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 51 ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 110
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 111 GTKAVTKYTSAK 122
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 65/67 (97%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 56 MSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 115
Query: 61 TKYTSSN 67
TKYTS+
Sbjct: 116 TKYTSAK 122
>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 125
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54 ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 114 GTKAVTKYTSAK 125
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 65/67 (97%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 59 MSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 118
Query: 61 TKYTSSN 67
TKYTS+
Sbjct: 119 TKYTSAK 125
>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|D Chain D, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|H Chain H, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1ZBB|D Chain D, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|H Chain H, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|DD Chain d, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|HH Chain h, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|D Chain D, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|H Chain H, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|D Chain D, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|H Chain H, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|D Chain D, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|H Chain H, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|D Chain D, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|H Chain H, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3KUY|D Chain D, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|H Chain H, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LEL|D Chain D, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|H Chain H, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|N Chain N, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|R Chain R, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|D Chain D, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|H Chain H, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|D Chain D, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|H Chain H, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|D Chain D, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|H Chain H, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|D Chain D, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|H Chain H, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|D Chain D, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|H Chain H, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3UT9|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 125
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54 ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 114 GTKAVTKYTSAK 125
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 65/67 (97%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 59 MSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 118
Query: 61 TKYTSSN 67
TKYTS+
Sbjct: 119 TKYTSAK 125
>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein
Length = 125
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/72 (93%), Positives = 69/72 (95%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 54 ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 113
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTSSK
Sbjct: 114 GTKAVTKYTSSK 125
Score = 132 bits (333), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 64/66 (96%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 59 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 118
Query: 61 TKYTSS 66
TKYTSS
Sbjct: 119 TKYTSS 124
>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 123
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 52 ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 112 GTKAVTKYTSAK 123
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 65/67 (97%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 57 MSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 116
Query: 61 TKYTSSN 67
TKYTS+
Sbjct: 117 TKYTSAK 123
>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|H Chain H, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 126
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 55 ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 115 GTKAVTKYTSAK 126
Score = 132 bits (333), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 65/67 (97%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 60 MSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 119
Query: 61 TKYTSSN 67
TKYTS+
Sbjct: 120 TKYTSAK 126
>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|F Chain F, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|B Chain B, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|F Chain F, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|B Chain B, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|F Chain F, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|B Chain B, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|F Chain F, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 126
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/72 (93%), Positives = 69/72 (95%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 55 ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTSSK
Sbjct: 115 GTKAVTKYTSSK 126
Score = 132 bits (332), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 64/66 (96%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 60 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 119
Query: 61 TKYTSS 66
TKYTSS
Sbjct: 120 TKYTSS 125
>pdb|1U35|D Chain D, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|H Chain H, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|D Chain D, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 126
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAM IMNSFVNDIFERIA+E+SRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSE
Sbjct: 55 ISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSE 114
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTSSK
Sbjct: 115 GTKAVTKYTSSK 126
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 65/66 (98%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M IMNSFVNDIFERIA+E+SRLAHYNKRSTITSRE+QTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 60 MGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAV 119
Query: 61 TKYTSS 66
TKYTSS
Sbjct: 120 TKYTSS 125
>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|H Chain H, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|D Chain D, The Human Nucleosome Structure
pdb|3AFA|H Chain H, The Human Nucleosome Structure
pdb|3AV1|D Chain D, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|H Chain H, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|D Chain D, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|H Chain H, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AYW|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 129
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 69/72 (95%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 58 ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 117
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 118 GTKAVTKYTSAK 129
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 64/67 (95%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 63 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 122
Query: 61 TKYTSSN 67
TKYTS+
Sbjct: 123 TKYTSAK 129
>pdb|2CV5|D Chain D, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|H Chain H, Crystal Structure Of Human Nucleosome Core Particle
Length = 126
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 69/72 (95%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 55 ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 115 GTKAVTKYTSAK 126
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 64/67 (95%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 60 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 119
Query: 61 TKYTSSN 67
TKYTS+
Sbjct: 120 TKYTSAK 126
>pdb|2XQL|B Chain B, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|D Chain D, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|F Chain F, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|H Chain H, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|J Chain J, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5)
Length = 90
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/72 (93%), Positives = 69/72 (95%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 19 ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 78
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTSSK
Sbjct: 79 GTKAVTKYTSSK 90
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 64/66 (96%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 24 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 83
Query: 61 TKYTSS 66
TKYTSS
Sbjct: 84 TKYTSS 89
>pdb|1AOI|D Chain D, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|H Chain H, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 99
Score = 137 bits (344), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 28 ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 87
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 88 GTKAVTKYTSAK 99
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 65/66 (98%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 33 MSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 92
Query: 61 TKYTSS 66
TKYTS+
Sbjct: 93 TKYTSA 98
>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 93
Score = 137 bits (344), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 70/72 (97%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 22 ISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 81
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 82 GTKAVTKYTSAK 93
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 65/66 (98%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVND+FERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 27 MSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 86
Query: 61 TKYTSS 66
TKYTS+
Sbjct: 87 TKYTSA 92
>pdb|3AN2|D Chain D, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|H Chain H, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 129
Score = 132 bits (331), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 67/72 (93%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KA I NSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 58 ISSKAXGIXNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 117
Query: 137 GTKAVTKYTSSK 148
GTKAVTKYTS+K
Sbjct: 118 GTKAVTKYTSAK 129
Score = 126 bits (317), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/66 (90%), Positives = 62/66 (93%)
Query: 2 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 61
I NSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 64 GIXNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 123
Query: 62 KYTSSN 67
KYTS+
Sbjct: 124 KYTSAK 129
>pdb|1HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 90
Score = 129 bits (323), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 67/72 (93%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAM MNSFVNDIFERIA +SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 19 ISSKAMGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 78
Query: 137 GTKAVTKYTSSK 148
GTKAVTK+TSSK
Sbjct: 79 GTKAVTKHTSSK 90
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/66 (90%), Positives = 62/66 (93%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M MNSFVNDIFERIA +SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 24 MGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 83
Query: 61 TKYTSS 66
TK+TSS
Sbjct: 84 TKHTSS 89
>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|H Chain H, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 130
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 68/71 (95%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAVSE
Sbjct: 57 ISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSE 116
Query: 137 GTKAVTKYTSS 147
GT+AVTKY+SS
Sbjct: 117 GTRAVTKYSSS 127
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 64/66 (96%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAVSEGT+AV
Sbjct: 62 MSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAV 121
Query: 61 TKYTSS 66
TKY+SS
Sbjct: 122 TKYSSS 127
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
H2a.Z-H2b
Length = 192
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/68 (80%), Positives = 65/68 (95%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAVSE
Sbjct: 22 ISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSE 81
Query: 137 GTKAVTKY 144
GT+AVTKY
Sbjct: 82 GTRAVTKY 89
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 61/63 (96%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAVSEGT+AV
Sbjct: 27 MSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAV 86
Query: 61 TKY 63
TKY
Sbjct: 87 TKY 89
>pdb|2RP5|A Chain A, Solution Structure Of The Oligomerization Domain In Cep-1
pdb|2RP5|B Chain B, Solution Structure Of The Oligomerization Domain In Cep-1
Length = 136
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 23 AHYNKRSTITSREIQTAVRLLLPGELAKHAV-SEG-TKAVTKYTSSNDTLSVLVLPINIK 80
A Y K +RE + +P ++ H + +EG + +T + +D SVL N
Sbjct: 32 AEYTKVVEFLAREAKVPRYTWVPTQVVSHILPTEGLERFLTAIKAGHD--SVL---FNAN 86
Query: 81 AMSIMNSFV------NDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123
+ M + NDIFERI +SS+L+ Y + + ++ IQ A++L
Sbjct: 87 GIYTMGDMIREFEKHNDIFERIGIDSSKLSKYYE-AFLSFYRIQEAMKL 134
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 9 NDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42
NDIFERI +SS+L+ Y + + ++ IQ A++L
Sbjct: 102 NDIFERIGIDSSKLSKYYE-AFLSFYRIQEAMKL 134
>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
pdb|3IBX|D Chain D, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
Length = 221
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 2 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 61
++M F N I + + E S HY + IT +E+Q A L + ++EG K
Sbjct: 70 AVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSI 129
Query: 62 K 62
K
Sbjct: 130 K 130
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 83 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 142
++M F N I + + E S HY + IT +E+Q A L + ++EG K
Sbjct: 70 AVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSI 129
Query: 143 K 143
K
Sbjct: 130 K 130
>pdb|1RFZ|A Chain A, Structure Of Protein Of Unknown Function From Bacillus
Stearothermophilus
pdb|1RFZ|B Chain B, Structure Of Protein Of Unknown Function From Bacillus
Stearothermophilus
pdb|1RFZ|C Chain C, Structure Of Protein Of Unknown Function From Bacillus
Stearothermophilus
pdb|1RFZ|D Chain D, Structure Of Protein Of Unknown Function From Bacillus
Stearothermophilus
Length = 168
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 56 GTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERI-AAESSRLAH 105
G+ T Y + ++ +N K+ N+F++DI I AA SSRLAH
Sbjct: 112 GSIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAH 162
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 2 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 61
++M F N I + + E S HY + IT +E+Q A L + ++EG K
Sbjct: 72 AVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSI 131
Query: 62 K 62
K
Sbjct: 132 K 132
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 83 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 142
++M F N I + + E S HY + IT +E+Q A L + ++EG K
Sbjct: 72 AVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSI 131
Query: 143 K 143
K
Sbjct: 132 K 132
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 15 IAAESSRLAHYNKRSTITSREIQTAVRLLLPG----ELAKHAVSEGTK---AVTKYTSSN 67
IA E ++H I+SR++ + LPG + G K + KY
Sbjct: 125 IAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ 184
Query: 68 DTLSVLVLPINI 79
+T+S++V+P N+
Sbjct: 185 ETISLVVVPSNV 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.125 0.321
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,194,015
Number of Sequences: 62578
Number of extensions: 89041
Number of successful extensions: 284
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 57
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)