Query psy17766
Match_columns 148
No_of_seqs 202 out of 396
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:17:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00427 H2B Histone H2B. 100.0 5.9E-43 1.3E-47 251.2 5.6 83 64-146 2-89 (89)
2 PLN00158 histone H2B; Provisio 100.0 1.8E-42 3.9E-47 258.5 5.8 86 62-147 26-116 (116)
3 PTZ00463 histone H2B; Provisio 100.0 3.8E-42 8.3E-47 256.8 5.0 85 62-146 27-116 (117)
4 KOG1744|consensus 100.0 8.2E-37 1.8E-41 231.1 6.4 85 64-148 38-127 (127)
5 smart00427 H2B Histone H2B. 100.0 2.1E-34 4.5E-39 207.0 3.2 65 1-65 25-89 (89)
6 PLN00158 histone H2B; Provisio 100.0 6.6E-34 1.4E-38 212.5 2.8 66 1-66 51-116 (116)
7 PTZ00463 histone H2B; Provisio 100.0 9.6E-34 2.1E-38 211.6 3.2 65 1-65 52-116 (117)
8 KOG1744|consensus 100.0 5.1E-30 1.1E-34 194.2 4.9 67 1-67 61-127 (127)
9 PF00125 Histone: Core histone 99.1 6.3E-11 1.4E-15 80.5 5.2 49 75-123 26-74 (75)
10 PF00125 Histone: Core histone 98.7 1.9E-08 4.2E-13 68.2 4.1 42 1-42 33-74 (75)
11 cd00074 H2A Histone 2A; H2A is 97.5 0.00013 2.9E-09 54.8 3.7 55 68-122 25-84 (115)
12 cd07981 TAF12 TATA Binding Pro 97.4 0.00058 1.3E-08 46.9 5.6 49 75-123 18-66 (72)
13 COG2036 HHT1 Histones H3 and H 97.3 0.00047 1E-08 50.0 5.3 53 75-127 35-87 (91)
14 PF00808 CBFD_NFYB_HMF: Histon 97.2 0.001 2.2E-08 44.2 5.0 47 75-121 19-65 (65)
15 smart00803 TAF TATA box bindin 97.1 0.00096 2.1E-08 45.2 4.7 48 75-122 18-65 (65)
16 PLN00035 histone H4; Provision 97.0 0.0015 3.3E-08 48.3 5.4 50 74-123 44-93 (103)
17 cd00076 H4 Histone H4, one of 97.0 0.0018 4E-08 46.3 5.4 49 74-122 28-76 (85)
18 PTZ00015 histone H4; Provision 97.0 0.0017 3.8E-08 48.0 5.4 50 74-123 45-94 (102)
19 cd07981 TAF12 TATA Binding Pro 96.6 0.0053 1.1E-07 42.1 5.2 40 3-42 27-66 (72)
20 PLN00153 histone H2A; Provisio 96.5 0.0025 5.4E-08 49.0 3.4 70 52-122 14-88 (129)
21 COG2036 HHT1 Histones H3 and H 96.5 0.0072 1.6E-07 43.8 5.3 44 3-46 44-87 (91)
22 PLN00156 histone H2AX; Provisi 96.4 0.0028 6.1E-08 49.3 3.0 55 68-122 34-93 (139)
23 PTZ00017 histone H2A; Provisio 96.3 0.0029 6.4E-08 48.9 2.7 55 68-122 32-91 (134)
24 PLN00157 histone H2A; Provisio 96.3 0.0031 6.7E-08 48.6 2.9 55 68-122 31-90 (132)
25 smart00417 H4 Histone H4. 96.2 0.0057 1.2E-07 42.8 3.5 45 75-119 29-73 (74)
26 cd07979 TAF9 TATA Binding Prot 96.0 0.0098 2.1E-07 44.5 3.9 52 75-126 17-68 (117)
27 COG5262 HTA1 Histone H2A [Chro 95.9 0.013 2.7E-07 44.8 4.1 54 75-130 43-96 (132)
28 PLN00035 histone H4; Provision 95.8 0.022 4.7E-07 42.3 5.2 39 4-42 55-93 (103)
29 smart00803 TAF TATA box bindin 95.8 0.017 3.7E-07 39.1 4.2 36 6-41 30-65 (65)
30 smart00414 H2A Histone 2A. 95.8 0.012 2.7E-07 43.5 3.8 48 75-122 26-73 (106)
31 PTZ00015 histone H4; Provision 95.7 0.025 5.4E-07 41.9 5.2 39 4-42 56-94 (102)
32 cd00076 H4 Histone H4, one of 95.7 0.028 6.1E-07 40.2 5.2 39 4-42 39-77 (85)
33 smart00428 H3 Histone H3. 95.6 0.03 6.6E-07 41.5 5.3 50 75-124 52-101 (105)
34 PLN00154 histone H2A; Provisio 95.6 0.016 3.4E-07 45.0 3.8 48 75-122 56-103 (136)
35 PF00808 CBFD_NFYB_HMF: Histon 95.4 0.038 8.2E-07 36.5 4.7 37 4-40 29-65 (65)
36 PF02969 TAF: TATA box binding 95.3 0.055 1.2E-06 37.0 5.4 48 75-122 19-66 (66)
37 PTZ00252 histone H2A; Provisio 95.2 0.028 6.1E-07 43.5 3.9 55 68-122 30-91 (134)
38 cd08050 TAF6 TATA Binding Prot 95.0 0.054 1.2E-06 46.9 5.6 50 75-124 15-64 (343)
39 cd00074 H2A Histone 2A; H2A is 94.8 0.061 1.3E-06 40.4 4.7 36 7-42 50-85 (115)
40 KOG1756|consensus 94.8 0.026 5.7E-07 43.4 2.8 48 75-122 44-91 (131)
41 cd07979 TAF9 TATA Binding Prot 94.5 0.11 2.3E-06 38.9 5.6 46 4-49 27-72 (117)
42 PF03847 TFIID_20kDa: Transcri 94.5 0.11 2.3E-06 35.6 5.0 48 75-122 16-63 (68)
43 smart00417 H4 Histone H4. 93.9 0.073 1.6E-06 37.2 3.2 35 4-38 39-73 (74)
44 PF02969 TAF: TATA box binding 93.3 0.19 4.1E-06 34.3 4.5 30 12-41 37-66 (66)
45 PF03847 TFIID_20kDa: Transcri 93.2 0.21 4.6E-06 34.2 4.6 39 3-41 25-63 (68)
46 smart00576 BTP Bromodomain tra 93.0 0.37 8E-06 33.1 5.6 48 75-122 22-69 (77)
47 smart00428 H3 Histone H3. 92.1 0.39 8.4E-06 35.7 5.1 35 8-42 66-100 (105)
48 cd08050 TAF6 TATA Binding Prot 91.6 0.38 8.3E-06 41.7 5.3 38 5-42 26-63 (343)
49 KOG0869|consensus 91.4 0.37 8E-06 38.5 4.5 49 75-123 50-98 (168)
50 PTZ00252 histone H2A; Provisio 91.0 0.3 6.5E-06 37.8 3.6 36 7-42 51-92 (134)
51 PLN00154 histone H2A; Provisio 90.6 0.36 7.8E-06 37.5 3.7 36 7-42 65-104 (136)
52 smart00414 H2A Histone 2A. 88.7 0.67 1.4E-05 34.3 3.8 36 7-42 35-74 (106)
53 PTZ00017 histone H2A; Provisio 88.2 0.69 1.5E-05 35.8 3.7 36 7-42 53-92 (134)
54 PLN00153 histone H2A; Provisio 88.2 0.79 1.7E-05 35.3 4.0 36 7-42 50-89 (129)
55 PLN00157 histone H2A; Provisio 87.8 0.74 1.6E-05 35.6 3.6 36 7-42 52-91 (132)
56 PLN00156 histone H2AX; Provisi 87.5 0.92 2E-05 35.4 4.0 36 7-42 55-94 (139)
57 PF15630 CENP-S: Kinetochore c 87.1 1.2 2.7E-05 31.1 4.1 48 75-122 24-71 (76)
58 KOG1756|consensus 85.4 1.8 3.9E-05 33.4 4.6 36 7-42 53-92 (131)
59 KOG1142|consensus 84.5 0.85 1.8E-05 38.8 2.7 54 75-128 171-228 (258)
60 PLN00160 histone H3; Provision 84.3 2.4 5.3E-05 31.1 4.7 48 76-123 44-91 (97)
61 PLN00160 histone H3; Provision 84.0 1.5 3.4E-05 32.1 3.6 35 7-47 60-94 (97)
62 KOG1142|consensus 83.8 0.82 1.8E-05 38.9 2.3 46 4-49 181-230 (258)
63 PLN00121 histone H3; Provision 83.6 2.3 5E-05 33.0 4.5 49 75-123 83-131 (136)
64 PTZ00018 histone H3; Provision 82.6 2.7 5.8E-05 32.6 4.6 49 75-123 83-131 (136)
65 KOG0871|consensus 82.4 3.1 6.6E-05 33.0 4.9 34 10-43 46-79 (156)
66 PF07524 Bromo_TP: Bromodomain 82.4 5.4 0.00012 27.0 5.6 48 75-122 22-69 (77)
67 PF02269 TFIID-18kDa: Transcri 81.6 2 4.3E-05 30.8 3.4 47 76-122 19-65 (93)
68 smart00576 BTP Bromodomain tra 81.4 4.2 9.1E-05 27.8 4.8 36 7-42 35-70 (77)
69 PLN00161 histone H3; Provision 81.1 3.9 8.4E-05 31.8 5.0 49 75-123 77-125 (135)
70 PF15511 CENP-T: Centromere ki 80.6 2.2 4.9E-05 38.0 4.0 42 75-116 373-414 (414)
71 KOG0869|consensus 80.5 3.3 7.2E-05 33.1 4.5 40 3-42 59-98 (168)
72 PLN00161 histone H3; Provision 80.3 2.7 5.9E-05 32.6 3.9 32 7-42 94-125 (135)
73 KOG2549|consensus 80.2 3.9 8.5E-05 38.3 5.5 50 75-124 27-76 (576)
74 COG5262 HTA1 Histone H2A [Chro 79.8 3.1 6.6E-05 32.0 3.9 35 8-42 53-91 (132)
75 cd07978 TAF13 The TATA Binding 79.7 6.4 0.00014 28.3 5.4 53 77-131 21-73 (92)
76 KOG0871|consensus 79.2 5 0.00011 31.8 5.1 54 75-128 30-83 (156)
77 KOG1757|consensus 77.9 0.96 2.1E-05 34.4 0.7 54 69-122 36-95 (131)
78 PF15510 CENP-W: Centromere ki 75.1 2.9 6.2E-05 30.8 2.5 42 83-126 57-98 (102)
79 KOG2549|consensus 74.7 3.7 7.9E-05 38.5 3.7 31 12-42 45-75 (576)
80 PLN00121 histone H3; Provision 69.9 6.2 0.00013 30.6 3.5 29 17-47 106-134 (136)
81 PTZ00018 histone H3; Provision 68.7 6.6 0.00014 30.5 3.4 26 17-42 106-131 (136)
82 PF15510 CENP-W: Centromere ki 67.3 8.4 0.00018 28.4 3.5 35 11-45 64-98 (102)
83 PF15630 CENP-S: Kinetochore c 66.9 7.1 0.00015 27.2 3.0 38 4-41 34-71 (76)
84 cd08048 TAF11 TATA Binding Pro 66.7 18 0.0004 25.6 5.1 50 75-124 32-84 (85)
85 PF02291 TFIID-31kDa: Transcri 64.4 22 0.00048 27.1 5.5 48 78-125 31-78 (129)
86 KOG0870|consensus 61.6 24 0.00051 28.5 5.4 50 75-124 29-78 (172)
87 PF02269 TFIID-18kDa: Transcri 60.9 7.5 0.00016 27.8 2.3 41 2-42 26-66 (93)
88 KOG1745|consensus 60.2 2.7 5.9E-05 32.7 -0.2 25 21-47 111-135 (137)
89 cd07978 TAF13 The TATA Binding 58.7 28 0.00061 24.9 4.9 40 2-42 27-66 (92)
90 PF02291 TFIID-31kDa: Transcri 57.7 33 0.00071 26.2 5.4 39 6-44 40-78 (129)
91 TIGR01241 FtsH_fam ATP-depende 57.5 38 0.00083 30.4 6.7 112 12-123 264-400 (495)
92 PRK10733 hflB ATP-dependent me 54.8 61 0.0013 30.5 7.7 113 11-123 360-499 (644)
93 KOG1745|consensus 53.6 8.8 0.00019 29.9 1.7 50 75-124 84-133 (137)
94 KOG3334|consensus 50.0 38 0.00082 26.7 4.7 51 75-125 26-79 (148)
95 KOG1757|consensus 48.7 12 0.00027 28.5 1.7 35 7-41 57-95 (131)
96 CHL00176 ftsH cell division pr 45.2 90 0.002 29.6 7.3 112 12-123 392-529 (638)
97 COG5095 TAF6 Transcription ini 44.1 45 0.00099 29.9 4.8 50 75-124 18-70 (450)
98 COG5095 TAF6 Transcription ini 43.1 23 0.0005 31.8 2.8 30 14-43 41-70 (450)
99 cd08048 TAF11 TATA Binding Pro 40.0 1E+02 0.0022 21.8 5.3 32 12-43 50-84 (85)
100 COG5208 HAP5 CCAAT-binding fac 38.2 33 0.00072 29.1 2.9 48 75-122 126-173 (286)
101 KOG3334|consensus 37.7 91 0.002 24.6 5.1 32 12-43 47-78 (148)
102 PF08221 HTH_9: RNA polymerase 36.0 96 0.0021 20.3 4.4 44 87-134 5-48 (62)
103 PRK03992 proteasome-activating 35.4 62 0.0013 28.3 4.3 43 7-49 336-378 (389)
104 COG2511 GatE Archaeal Glu-tRNA 35.2 1.2E+02 0.0026 29.0 6.3 71 75-145 467-553 (631)
105 PF07524 Bromo_TP: Bromodomain 34.7 1.2E+02 0.0026 20.3 4.8 37 5-41 33-69 (77)
106 PRK07452 DNA polymerase III su 34.4 60 0.0013 27.0 4.0 49 75-123 148-198 (326)
107 COG5150 Class 2 transcription 33.8 88 0.0019 24.4 4.4 32 11-42 46-77 (148)
108 PF04719 TAFII28: hTAFII28-lik 33.8 1.5E+02 0.0032 21.3 5.4 49 76-124 41-90 (90)
109 PRK03992 proteasome-activating 31.6 56 0.0012 28.6 3.4 42 87-128 335-376 (389)
110 PF13654 AAA_32: AAA domain; P 30.9 52 0.0011 30.3 3.2 29 94-122 476-504 (509)
111 TIGR02030 BchI-ChlI magnesium 30.1 47 0.001 28.9 2.7 32 18-49 284-315 (337)
112 PF00725 3HCDH: 3-hydroxyacyl- 30.0 92 0.002 21.2 3.7 33 88-123 3-35 (97)
113 TIGR02442 Cob-chelat-sub cobal 27.7 86 0.0019 29.4 4.1 34 15-48 276-309 (633)
114 PTZ00361 26 proteosome regulat 27.4 96 0.0021 28.1 4.3 37 10-46 391-427 (438)
115 CHL00081 chlI Mg-protoporyphyr 25.0 81 0.0017 27.8 3.3 33 17-49 296-328 (350)
116 TIGR02030 BchI-ChlI magnesium 24.7 53 0.0011 28.6 2.0 30 100-129 285-314 (337)
117 TIGR02442 Cob-chelat-sub cobal 24.5 83 0.0018 29.5 3.4 35 95-129 275-309 (633)
118 COG1466 HolA DNA polymerase II 24.4 1.1E+02 0.0023 26.1 3.8 52 75-126 158-209 (334)
119 COG5208 HAP5 CCAAT-binding fac 24.3 1E+02 0.0023 26.2 3.6 37 6-42 137-174 (286)
120 PF09415 CENP-X: CENP-S associ 23.4 89 0.0019 21.4 2.6 46 75-120 18-64 (72)
121 TIGR01241 FtsH_fam ATP-depende 23.3 1.6E+02 0.0034 26.5 4.9 51 93-143 264-325 (495)
122 PF05258 DUF721: Protein of un 22.6 93 0.002 20.4 2.5 26 110-135 18-43 (89)
123 smart00350 MCM minichromosome 22.4 1.8E+02 0.004 26.4 5.1 32 94-125 474-505 (509)
124 TIGR02031 BchD-ChlD magnesium 22.4 1E+02 0.0022 28.7 3.6 30 17-46 232-261 (589)
125 PRK08487 DNA polymerase III su 22.0 1.4E+02 0.0031 25.2 4.1 50 75-126 153-202 (328)
126 PF03477 ATP-cone: ATP cone do 21.9 74 0.0016 21.5 2.0 36 91-126 35-70 (90)
127 PRK13407 bchI magnesium chelat 21.4 1.4E+02 0.003 26.0 4.0 35 15-49 278-312 (334)
128 PF08118 MDM31_MDM32: Yeast mi 21.0 1.3E+02 0.0029 28.1 3.9 45 2-46 453-498 (503)
129 CHL00081 chlI Mg-protoporyphyr 20.7 89 0.0019 27.5 2.7 30 100-129 298-327 (350)
130 PF11945 WASH_WAHD: WAHD domai 20.3 1.2E+02 0.0025 26.3 3.3 23 79-101 24-46 (297)
131 COG5150 Class 2 transcription 20.1 2.3E+02 0.0049 22.2 4.5 49 75-124 29-78 (148)
No 1
>smart00427 H2B Histone H2B.
Probab=100.00 E-value=5.9e-43 Score=251.15 Aligned_cols=83 Identities=77% Similarity=0.981 Sum_probs=80.0
Q ss_pred ccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhhh
Q psy17766 64 TSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGT 138 (148)
Q Consensus 64 ~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg~ 138 (148)
+++.|||||| | +|||++||+|||||+||||||||.||++|+++|||+|||+||||+||||+|||||+|||++||+
T Consensus 2 sy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEgt 81 (89)
T smart00427 2 TYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEGT 81 (89)
T ss_pred cHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3567999999 6 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccc
Q psy17766 139 KAVTKYTS 146 (148)
Q Consensus 139 kav~~~~~ 146 (148)
|||+||++
T Consensus 82 kAv~k~~~ 89 (89)
T smart00427 82 KAVTKYSS 89 (89)
T ss_pred HHHHhhcC
Confidence 99999975
No 2
>PLN00158 histone H2B; Provisional
Probab=100.00 E-value=1.8e-42 Score=258.50 Aligned_cols=86 Identities=70% Similarity=0.906 Sum_probs=82.7
Q ss_pred ccccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhh
Q psy17766 62 KYTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136 (148)
Q Consensus 62 k~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~e 136 (148)
+.+++.|||||| | +|||++||+||||||||||||||.||++|++||+|+|||+||||+||||+|||||+||||+|
T Consensus 26 ~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvLpgELaKhAvsE 105 (116)
T PLN00158 26 TETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSE 105 (116)
T ss_pred cccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhccHHHHHHHHHH
Confidence 456778999999 6 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccC
Q psy17766 137 GTKAVTKYTSS 147 (148)
Q Consensus 137 g~kav~~~~~~ 147 (148)
|+|||++|+++
T Consensus 106 GtkAv~k~~~~ 116 (116)
T PLN00158 106 GTKAVTKFTSA 116 (116)
T ss_pred HHHHHHHhhcC
Confidence 99999999875
No 3
>PTZ00463 histone H2B; Provisional
Probab=100.00 E-value=3.8e-42 Score=256.75 Aligned_cols=85 Identities=62% Similarity=0.839 Sum_probs=81.5
Q ss_pred ccccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhh
Q psy17766 62 KYTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136 (148)
Q Consensus 62 k~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~e 136 (148)
+-+++.|||||| | +|||++||+||||||||||||||.||++|++||+|+|||+|||||||||+|||||+||||+|
T Consensus 27 ~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGELaKhAvsE 106 (117)
T PTZ00463 27 YDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSE 106 (117)
T ss_pred cchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHHHHHhhhhH
Confidence 345678999999 6 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccc
Q psy17766 137 GTKAVTKYTS 146 (148)
Q Consensus 137 g~kav~~~~~ 146 (148)
|+|||++|++
T Consensus 107 GtkAv~k~~~ 116 (117)
T PTZ00463 107 GTKAVTKFTS 116 (117)
T ss_pred HHHHHHHhhc
Confidence 9999999986
No 4
>KOG1744|consensus
Probab=100.00 E-value=8.2e-37 Score=231.13 Aligned_cols=85 Identities=81% Similarity=1.044 Sum_probs=81.7
Q ss_pred ccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhhh
Q psy17766 64 TSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGT 138 (148)
Q Consensus 64 ~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg~ 138 (148)
..+.|+|||| | +|||+++|+|||||+|||||+||.||++|++|+||+||++||||+||||+|||||+|||++||+
T Consensus 38 ~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLllPgel~khA~seGt 117 (127)
T KOG1744|consen 38 SYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLLLPGELAKHAVSEGT 117 (127)
T ss_pred ceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHhCchHHhhhhhcccc
Confidence 3467899999 5 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCC
Q psy17766 139 KAVTKYTSSK 148 (148)
Q Consensus 139 kav~~~~~~k 148 (148)
|||++|+++|
T Consensus 118 kav~ky~~sk 127 (127)
T KOG1744|consen 118 KAVTKYTSSK 127 (127)
T ss_pred hhheeeccCC
Confidence 9999999886
No 5
>smart00427 H2B Histone H2B.
Probab=100.00 E-value=2.1e-34 Score=206.97 Aligned_cols=65 Identities=88% Similarity=1.189 Sum_probs=63.6
Q ss_pred CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccccccccccccccccccc
Q psy17766 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 65 (148)
Q Consensus 1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~s 65 (148)
|+|||||+||||||||.||++|++|+||+|||+||||+||||+|||||+|||++||+|||+||++
T Consensus 25 m~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEgtkAv~k~~~ 89 (89)
T smart00427 25 MSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEGTKAVTKYSS 89 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhcC
Confidence 78999999999999999999999999999999999999999999999999999999999999974
No 6
>PLN00158 histone H2B; Provisional
Probab=99.98 E-value=6.6e-34 Score=212.47 Aligned_cols=66 Identities=80% Similarity=1.136 Sum_probs=64.5
Q ss_pred CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccC
Q psy17766 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 66 (148)
Q Consensus 1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sS 66 (148)
|+||||||||||||||.||++|++||+|+|||+||||+||||+|||||+|||++||++||++|+++
T Consensus 51 M~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvLpgELaKhAvsEGtkAv~k~~~~ 116 (116)
T PLN00158 51 MSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSEGTKAVTKFTSA 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Confidence 789999999999999999999999999999999999999999999999999999999999999875
No 7
>PTZ00463 histone H2B; Provisional
Probab=99.98 E-value=9.6e-34 Score=211.64 Aligned_cols=65 Identities=74% Similarity=1.068 Sum_probs=63.8
Q ss_pred CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccccccccccccccccccc
Q psy17766 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 65 (148)
Q Consensus 1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~s 65 (148)
|+||||||||||||||.||++|++|++|+|||+||||+||||+|||||+|||++||++||++|++
T Consensus 52 M~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGELaKhAvsEGtkAv~k~~~ 116 (117)
T PTZ00463 52 MNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSEGTKAVTKFTS 116 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHHHHHhhhhHHHHHHHHhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999975
No 8
>KOG1744|consensus
Probab=99.96 E-value=5.1e-30 Score=194.16 Aligned_cols=67 Identities=90% Similarity=1.203 Sum_probs=65.0
Q ss_pred CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCC
Q psy17766 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSN 67 (148)
Q Consensus 1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSk 67 (148)
|+|||||+||||||||.||++|++|+||+||++||||+||||+|||||+|||++||++||++|++++
T Consensus 61 ~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLllPgel~khA~seGtkav~ky~~sk 127 (127)
T KOG1744|consen 61 MGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 127 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHhCchHHhhhhhcccchhheeeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999998763
No 9
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.15 E-value=6.3e-11 Score=80.51 Aligned_cols=49 Identities=37% Similarity=0.491 Sum_probs=47.7
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
.+||++||.+|+++++|++++|.++|..+++++||.||+++|||.|+|+
T Consensus 26 ~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 26 YRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999999986
No 10
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=98.69 E-value=1.9e-08 Score=68.20 Aligned_cols=42 Identities=38% Similarity=0.526 Sum_probs=40.0
Q ss_pred CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
|.+|++++.|++++|.++|..++.++||.||+++|||.|+|+
T Consensus 33 ~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 33 LVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 457999999999999999999999999999999999999986
No 11
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=97.46 E-value=0.00013 Score=54.79 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=50.4
Q ss_pred Ccccee---e--eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVL---V--LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvL---v--~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|+|.| . ..||..|...|-..+.++...|.+.|.+.++.+++.+||+|+|+.|++
T Consensus 25 ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~ 84 (115)
T cd00074 25 RIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR 84 (115)
T ss_pred HHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence 356666 1 789999999999999999999999999999999999999999999998
No 12
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=97.35 E-value=0.00058 Score=46.88 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=46.2
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..++..+...|-.+.+|+.+.++.+|..+|...++.|+..+|||.+++-
T Consensus 18 ~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 18 EQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999998763
No 13
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=97.35 E-value=0.00047 Score=49.98 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=49.7
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCch
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 127 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg 127 (148)
-.+|..|..-|+..+..+++.|+++|..+|...||.|+++.||+.|.+.+-++
T Consensus 35 ~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 35 ERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 57899999999999999999999999999999999999999999999977653
No 14
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=97.16 E-value=0.001 Score=44.19 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=43.2
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 121 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAv 121 (148)
..+|+.|...+......+.+.|+.+|...+..++|+||+++||..|+
T Consensus 19 ~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 19 MRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 56999999999999999999999999999999999999999999986
No 15
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=97.13 E-value=0.00096 Score=45.25 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=44.9
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..||..+..-+-..+.+..+.|+.+|..+++..||+|+|..||..|.|
T Consensus 18 ~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 18 GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 578999999999999999999999999999999999999999988864
No 16
>PLN00035 histone H4; Provisional
Probab=97.04 E-value=0.0015 Score=48.35 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=47.3
Q ss_pred eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 74 VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 74 v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
|..||..+..-+...++++++.|+.+|..++.+.+|+|++..||..|++.
T Consensus 44 vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 44 VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999874
No 17
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=97.01 E-value=0.0018 Score=46.32 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=46.3
Q ss_pred eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 74 VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 74 v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
|..||..+..-+...++.+++.|+.+|..++.+.+|.|+++.||..|++
T Consensus 28 vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alk 76 (85)
T cd00076 28 VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALK 76 (85)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999998886
No 18
>PTZ00015 histone H4; Provisional
Probab=97.00 E-value=0.0017 Score=47.96 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=47.1
Q ss_pred eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 74 VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 74 v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
|..||..+..-+...++++++.|+.+|..++.+.+|.|+++.||..|++.
T Consensus 45 vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr 94 (102)
T PTZ00015 45 VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR 94 (102)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999999988763
No 19
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=96.63 E-value=0.0053 Score=42.09 Aligned_cols=40 Identities=18% Similarity=0.401 Sum_probs=35.6
Q ss_pred hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+-.+..|+.+.++.+|..||++.++.|+..+|||-+++-
T Consensus 27 ~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 27 LLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3556778888999999999999999999999999999874
No 20
>PLN00153 histone H2A; Provisional
Probab=96.55 E-value=0.0025 Score=48.99 Aligned_cols=70 Identities=24% Similarity=0.252 Sum_probs=56.3
Q ss_pred ccccccccccccccCCCccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 52 AVSEGTKAVTKYTSSNDTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 52 Av~eG~kav~k~~sSkyi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
+.+.-.+|--.|+-+ .|+|.|. ..|+..|..+|-..+.++..+|.+.|.+-++.+++.-|+||+||.|++
T Consensus 14 ~~srS~ragL~FpVg-Ri~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 88 (129)
T PLN00153 14 AVSRSAKAGLQFPVG-RIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR 88 (129)
T ss_pred ccCcccccCcccchH-HHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhcc
Confidence 344444444344322 4667661 789999999999999999999999999999999999999999999998
No 21
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=96.48 E-value=0.0072 Score=43.85 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=39.1
Q ss_pred hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 46 (148)
Q Consensus 3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg 46 (148)
.|+..+..+++.|+.+|..+|.+.||.|++++||+.|.+.+-++
T Consensus 44 ~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 44 ELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 35677888899999999999999999999999999999987654
No 22
>PLN00156 histone H2AX; Provisional
Probab=96.41 E-value=0.0028 Score=49.26 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=50.3
Q ss_pred Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|+|.|. ..|+..|..+|-..+.++..+|.+.|.+-++.+++.-|+||+||.|++
T Consensus 34 Ri~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIr 93 (139)
T PLN00156 34 RIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
T ss_pred HHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhcc
Confidence 4566661 789999999999999999999999999999999999999999999998
No 23
>PTZ00017 histone H2A; Provisional
Probab=96.34 E-value=0.0029 Score=48.86 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=50.1
Q ss_pred Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|+|.|. ..|+..|..+|-..+.++...|.+-|.+-++.+++.-||||+||.|++
T Consensus 32 Ri~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~ 91 (134)
T PTZ00017 32 RVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIR 91 (134)
T ss_pred HHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhcc
Confidence 3566661 789999999999999999999999999999999999999999999998
No 24
>PLN00157 histone H2A; Provisional
Probab=96.34 E-value=0.0031 Score=48.64 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=50.4
Q ss_pred Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|++.|. ..|+..|..+|-..+.++..+|.+.|.+-++.+++.-|+||+||.|++
T Consensus 31 Ri~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 90 (132)
T PLN00157 31 RIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVR 90 (132)
T ss_pred HHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhccc
Confidence 4566661 789999999999999999999999999999999999999999999998
No 25
>smart00417 H4 Histone H4.
Probab=96.22 E-value=0.0057 Score=42.77 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=42.1
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQT 119 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqt 119 (148)
..||..+..-+..+++++++.|+.+|..++.+.+|.|+++.||-.
T Consensus 29 kRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 29 KRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 689999999999999999999999999999999999999999853
No 26
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=95.98 E-value=0.0098 Score=44.54 Aligned_cols=52 Identities=6% Similarity=0.146 Sum_probs=48.9
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 126 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp 126 (148)
...+.++..-|.-|+....+.|+.+|..++++.+|.|++..||..|+...+.
T Consensus 17 ~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 17 TEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999999999998775
No 27
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=95.88 E-value=0.013 Score=44.81 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=49.4
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 130 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLa 130 (148)
+.|+++|-..+...+.++..+|.+-|.+-|+.+|+..|+||++|-|+| =..||-
T Consensus 43 ~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIr--nD~EL~ 96 (132)
T COG5262 43 MRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIR--NDEELN 96 (132)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhc--CcHHHH
Confidence 899999999999999999999999999999999999999999999998 334443
No 28
>PLN00035 histone H4; Provisional
Probab=95.83 E-value=0.022 Score=42.27 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=35.5
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+...+.+.++.|+.+|..++.+.+|+|++..||..|++.
T Consensus 55 lr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 55 TRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 456778899999999999999999999999999999875
No 29
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=95.81 E-value=0.017 Score=39.08 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766 6 SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41 (148)
Q Consensus 6 sfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr 41 (148)
..+....+.|+.+|..++++.||+|+|..||..|.|
T Consensus 30 ~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 30 EDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 345566788999999999999999999999988864
No 30
>smart00414 H2A Histone 2A.
Probab=95.81 E-value=0.012 Score=43.55 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=45.7
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..|++.|..+|-..+.++...|.+-|.+-++.+++..||+|+||.|++
T Consensus 26 ~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~ 73 (106)
T smart00414 26 KRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIR 73 (106)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhcc
Confidence 688999999999999999999999999999999999999999999998
No 31
>PTZ00015 histone H4; Provisional
Probab=95.74 E-value=0.025 Score=41.85 Aligned_cols=39 Identities=18% Similarity=0.434 Sum_probs=35.1
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+...+.+.++.|+.+|..++.+.+|+|++..||..|++.
T Consensus 56 ~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr 94 (102)
T PTZ00015 56 VRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR 94 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence 445678889999999999999999999999999999874
No 32
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=95.72 E-value=0.028 Score=40.22 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=34.9
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+...+...++.|+.+|..++.+.+|+|++..||..|++.
T Consensus 39 ~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 39 VRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 345677899999999999999999999999999999874
No 33
>smart00428 H3 Histone H3.
Probab=95.64 E-value=0.03 Score=41.55 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=46.5
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
..+++.|+.-|.....+..-.+.++|..++.+.||.||.++|||.|.|+-
T Consensus 52 ~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir 101 (105)
T smart00428 52 LRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIR 101 (105)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHh
Confidence 46889999999999999999999999999999999999999999998853
No 34
>PLN00154 histone H2A; Provisional
Probab=95.62 E-value=0.016 Score=44.99 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=45.5
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..|++.|..+|-..+.++.-+|.+-|.+-++.+++.-||||+||.|+|
T Consensus 56 ~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr 103 (136)
T PLN00154 56 GRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence 489999999999999999999999999999999999999999999998
No 35
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=95.42 E-value=0.038 Score=36.52 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=31.8
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 40 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAv 40 (148)
++.....+.+.|+.+|...+..++|+||+.+||..|+
T Consensus 29 i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 29 IAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 4555667789999999999999999999999999986
No 36
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=95.34 E-value=0.055 Score=37.00 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=37.4
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..++..+-..|-.=+.+-+..|..||.+.++..||.+||+.||..|.|
T Consensus 19 ~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 19 SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp --B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 345667777777778888899999999999999999999999999976
No 37
>PTZ00252 histone H2A; Provisional
Probab=95.17 E-value=0.028 Score=43.50 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=48.0
Q ss_pred Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhc--cCCCccChHHHHHHHH
Q psy17766 68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHY--NKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~--~kr~Tlt~reIqtAvr 122 (148)
.|+|.|. ..|+..|..+|-..+.++..+|.+.|.+-++. +|+.-|+||+||.|||
T Consensus 30 Ri~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr 91 (134)
T PTZ00252 30 RVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR 91 (134)
T ss_pred HHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence 3566661 78999999999999999999999999999854 8999999999999998
No 38
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.97 E-value=0.054 Score=46.92 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=46.7
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
..+|..|...+..-+.+....|+.||.++++..||+||+..||..|++..
T Consensus 15 ~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~ 64 (343)
T cd08050 15 DSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLR 64 (343)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999863
No 39
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=94.77 E-value=0.061 Score=40.42 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+..+...|.+.|.+.++.+++.+|++++|+.|++-
T Consensus 50 vLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~n 85 (115)
T cd00074 50 VLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRN 85 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence 344455566667778889999999999999999985
No 40
>KOG1756|consensus
Probab=94.76 E-value=0.026 Score=43.40 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=44.7
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..||.-|-..|-..+.++--.|.+-|.+-++.|+|.-++||+||-|++
T Consensus 44 ~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 44 QRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 788899999899888888889999999999999999999999999998
No 41
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=94.54 E-value=0.11 Score=38.89 Aligned_cols=46 Identities=7% Similarity=0.156 Sum_probs=39.9
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccc
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 49 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLa 49 (148)
+.-|+....+.|+.+|..++++.+|+||+..||..|+...+.+...
T Consensus 27 Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~~~f~ 72 (117)
T cd07979 27 LLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVDYSFT 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCC
Confidence 5567888888999999999999999999999999999987764443
No 42
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=94.47 E-value=0.11 Score=35.63 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=39.1
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..+...+-..|-.+.+|+.+.+...|++||++.+..||..+|||....
T Consensus 16 ~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 16 EKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 567888899999999999999999999999999999999999997654
No 43
>smart00417 H4 Histone H4.
Probab=93.86 E-value=0.073 Score=37.21 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=30.8
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQT 38 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqt 38 (148)
+..++.++++.|+.+|..++.+.+|+|++..||..
T Consensus 39 lr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 39 TRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 34577888999999999999999999999999853
No 44
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=93.33 E-value=0.19 Score=34.33 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=24.6
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVR 41 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvr 41 (148)
...|..||.+.+++.||.+||+.||..|.|
T Consensus 37 lreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 37 LREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 456789999999999999999999999976
No 45
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=93.19 E-value=0.21 Score=34.18 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=31.0
Q ss_pred hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41 (148)
Q Consensus 3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr 41 (148)
++-.+..|+.+.+...|++||++.+..||..+|||....
T Consensus 25 ~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 25 LLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 345667777788889999999999999999999998654
No 46
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=92.95 E-value=0.37 Score=33.09 Aligned_cols=48 Identities=8% Similarity=0.167 Sum_probs=44.0
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
-+++..|++-|-.++.+.+..|+.++.+++...+|.+.++.||..|..
T Consensus 22 ~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~ 69 (77)
T smart00576 22 DSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALE 69 (77)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 467888999999999999999999999999999999999999998875
No 47
>smart00428 H3 Histone H3.
Probab=92.14 E-value=0.39 Score=35.66 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 8 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 8 v~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.-+....+.++|..++.+.||.||.++|||-|.|+
T Consensus 66 sE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~ri 100 (105)
T smart00428 66 AEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHH
Confidence 34455566678899999999999999999999986
No 48
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=91.64 E-value=0.38 Score=41.70 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=33.9
Q ss_pred HhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 5 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 5 nsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
..-+.+....|+.||.+++++.||+|++..||..|+|.
T Consensus 26 a~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~ 63 (343)
T cd08050 26 AEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRL 63 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 34556677889999999999999999999999999998
No 49
>KOG0869|consensus
Probab=91.38 E-value=0.37 Score=38.47 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=46.5
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
-.||+.|-..|.-.|..+..=|..||+.-|+..||+||+-.||-.|.--
T Consensus 50 aKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~t 98 (168)
T KOG0869|consen 50 AKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMST 98 (168)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999753
No 50
>PTZ00252 histone H2A; Provisional
Probab=90.99 E-value=0.3 Score=37.84 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhHHHh------hcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAH------YNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~------~~kk~Tlt~reiqtAvrl 42 (148)
|+-.++|.++.|..+|+- .+|+..|++|+||.|+|-
T Consensus 51 YLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIrN 92 (134)
T PTZ00252 51 YMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVRH 92 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhccC
Confidence 566788888888888873 368899999999999985
No 51
>PLN00154 histone H2A; Provisional
Probab=90.57 E-value=0.36 Score=37.50 Aligned_cols=36 Identities=36% Similarity=0.402 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhHHH----hhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLA----HYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~----~~~kk~Tlt~reiqtAvrl 42 (148)
|+-.++|.++.|..+|+ +.+++..||+|+||.|+|-
T Consensus 65 YLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrn 104 (136)
T PLN00154 65 YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccC
Confidence 56778888888866665 6699999999999999984
No 52
>smart00414 H2A Histone 2A.
Probab=88.72 E-value=0.67 Score=34.33 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHh----HHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESS----RLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~----~L~~~~kk~Tlt~reiqtAvrl 42 (148)
|+-.++|.++.|.. +-++.+++..||+++||.|++-
T Consensus 35 yLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~n 74 (106)
T smart00414 35 YLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRN 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccC
Confidence 45566666666644 4456789999999999999985
No 53
>PTZ00017 histone H2A; Provisional
Probab=88.23 E-value=0.69 Score=35.83 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHh----HHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESS----RLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~----~L~~~~kk~Tlt~reiqtAvrl 42 (148)
|+..++|.++.|.. +-++.+++..||+|+||.|++-
T Consensus 53 YLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~n 92 (134)
T PTZ00017 53 YLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRN 92 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccC
Confidence 34455666665544 4456799999999999999984
No 54
>PLN00153 histone H2A; Provisional
Probab=88.22 E-value=0.79 Score=35.30 Aligned_cols=36 Identities=36% Similarity=0.525 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhHH----HhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRL----AHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L----~~~~kk~Tlt~reiqtAvrl 42 (148)
|+-.+.|.++.|..+| ++.+++..|+||+||.|++-
T Consensus 50 YLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 89 (129)
T PLN00153 50 YLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRN 89 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccC
Confidence 4556666666665555 56699999999999999985
No 55
>PLN00157 histone H2A; Provisional
Probab=87.77 E-value=0.74 Score=35.57 Aligned_cols=36 Identities=44% Similarity=0.556 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhHH----HhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRL----AHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L----~~~~kk~Tlt~reiqtAvrl 42 (148)
|+-.++|.++.|..+| ++.+++.-|++|+||.|+|-
T Consensus 52 YLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 91 (132)
T PLN00157 52 YLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRN 91 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccC
Confidence 4556677777765555 56689999999999999985
No 56
>PLN00156 histone H2AX; Provisional
Probab=87.49 E-value=0.92 Score=35.35 Aligned_cols=36 Identities=42% Similarity=0.555 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHH----HhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRL----AHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L----~~~~kk~Tlt~reiqtAvrl 42 (148)
|+-.+.|.++.|..+| ++.+++..|+||+||.|+|-
T Consensus 55 YLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrn 94 (139)
T PLN00156 55 YLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccC
Confidence 4455666666665555 56789999999999999985
No 57
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=87.05 E-value=1.2 Score=31.08 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=40.8
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..+|++.++-|.-++-+..+.++.+---.|+..||+||++.|+.-..|
T Consensus 24 ~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 24 VEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp SEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 578999999999999999999999999999999999999999876554
No 58
>KOG1756|consensus
Probab=85.36 E-value=1.8 Score=33.43 Aligned_cols=36 Identities=36% Similarity=0.535 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhHHH----hhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLA----HYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~----~~~kk~Tlt~reiqtAvrl 42 (148)
|+.-.+|+++.|..+++ +-|+|.-|+||.||-|++-
T Consensus 53 ~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~N 92 (131)
T KOG1756|consen 53 YLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIRN 92 (131)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHhC
Confidence 55677888888876664 6699999999999999993
No 59
>KOG1142|consensus
Probab=84.49 E-value=0.85 Score=38.82 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=47.5
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH----hhCchH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR----LLLPGE 128 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr----l~lpge 128 (148)
..|-...-++|--+..|+.|-|..-++.||++.|..||-+||||..+. +-+||.
T Consensus 171 ~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf 228 (258)
T KOG1142|consen 171 TKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGF 228 (258)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccCCCc
Confidence 778888999999999999999999999999999999999999998764 445553
No 60
>PLN00160 histone H3; Provisional
Probab=84.33 E-value=2.4 Score=31.08 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 76 PINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 76 ~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
.+.+.|+.-+..-..+.+-.+-+++.-.+.+.||.||.++|||-|-|+
T Consensus 44 Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~ri 91 (97)
T PLN00160 44 RWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRI 91 (97)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHh
Confidence 455666666666556666666667788889999999999999999873
No 61
>PLN00160 histone H3; Provisional
Probab=84.04 E-value=1.5 Score=32.11 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
|+-++|| ++.-.+.+.||.||.++|||-|.|+ .|+
T Consensus 60 yLv~lfe----d~~lca~HakRVTl~~kD~~L~~ri--rg~ 94 (97)
T PLN00160 60 HLVGLFE----DSNLCAIHGKRVTIMPKDMQLARRI--RGQ 94 (97)
T ss_pred HHHHHHh----hhHHHHHHhcccccchhhHHHHHHh--hcc
Confidence 3444454 5566789999999999999999885 554
No 62
>KOG1142|consensus
Probab=83.77 E-value=0.82 Score=38.90 Aligned_cols=46 Identities=26% Similarity=0.373 Sum_probs=36.5
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH----hCCcccc
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL----LLPGELA 49 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl----~LpgeLa 49 (148)
|--+..|+.|.|..-|+.||++.|..||-.||||..+.- -+||.=+
T Consensus 181 LleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf~s 230 (258)
T KOG1142|consen 181 LLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGFSS 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccCCCccc
Confidence 444566777778888999999999999999999988754 5676544
No 63
>PLN00121 histone H3; Provisional
Probab=83.57 E-value=2.3 Score=33.00 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=41.2
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+.+.|+.-|.--..+.+-.+-+++.-.+.+.||.||.++|||-|.||
T Consensus 83 ~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri 131 (136)
T PLN00121 83 LRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHh
Confidence 5677788887777777777777778889999999999999999999874
No 64
>PTZ00018 histone H3; Provisional
Probab=82.57 E-value=2.7 Score=32.64 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=41.5
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
+.+.+.|+.-|.--..+.+-.+-+++.-.+.+.||.||.++|||-|.||
T Consensus 83 ~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri 131 (136)
T PTZ00018 83 LRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHh
Confidence 5677788888877777777777778888999999999999999999875
No 65
>KOG0871|consensus
Probab=82.41 E-value=3.1 Score=32.99 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
.+..-|+.||.+.|....|+||.+.+++.|..-+
T Consensus 46 EFI~liSsEAneic~~e~KKTIa~EHV~KALe~L 79 (156)
T KOG0871|consen 46 EFINLISSEANEICNKEAKKTIAPEHVIKALENL 79 (156)
T ss_pred HHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHc
Confidence 4566799999999999999999999999999864
No 66
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=82.39 E-value=5.4 Score=26.98 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=44.7
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
-+++..|++.+..++.+.+.+|+..+...+...+|...+..|+..|..
T Consensus 22 ~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 22 DSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998865
No 67
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=81.62 E-value=2 Score=30.78 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=23.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 76 PINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 76 ~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
--+.++..+|..+|.+-.-.+..+|..+|...++..|+..|+-.++|
T Consensus 19 ~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 19 EPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999887
No 68
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=81.43 E-value=4.2 Score=27.79 Aligned_cols=36 Identities=8% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
++-+.+..|+.++.+++...+|.+.+..||..|..-
T Consensus 35 i~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 35 ILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 444556889999999999999999999999988763
No 69
>PLN00161 histone H3; Provisional
Probab=81.11 E-value=3.9 Score=31.76 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=39.5
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
+.+.+.|+.-|..-..+.+-.+-+++.-.+.+.||.||.++|||-|.||
T Consensus 77 ~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~ri 125 (135)
T PLN00161 77 FRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRI 125 (135)
T ss_pred cEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHh
Confidence 4466777777776666666667778888899999999999999999885
No 70
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=80.65 E-value=2.2 Score=38.03 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=36.0
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSRE 116 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~re 116 (148)
+.|+++||..+....+.+||.++..=.-.|.+.+|+||...|
T Consensus 373 ~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 373 MKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 679999999999999999999999999999999999998764
No 71
>KOG0869|consensus
Probab=80.49 E-value=3.3 Score=33.13 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=34.3
Q ss_pred hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.|.-.|..+.-=|..||+.-|...||+||+-.||-.|.--
T Consensus 59 ~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~t 98 (168)
T KOG0869|consen 59 TVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMST 98 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 4556677777788999999999999999999999998753
No 72
>PLN00161 histone H3; Provisional
Probab=80.25 E-value=2.7 Score=32.61 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
|+-++|| ++.-++.+.||.||.++|||-|.|+
T Consensus 94 yLV~lFe----da~lcaiHAkRVTlm~kDm~La~ri 125 (135)
T PLN00161 94 FLVHLFE----DCNLCAIHAKRVTIMPKDMQLARRI 125 (135)
T ss_pred HHHHHHH----HHHHHHHHhcCcccchhhHHHHHHh
Confidence 4455555 5667889999999999999999986
No 73
>KOG2549|consensus
Probab=80.19 E-value=3.9 Score=38.35 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=45.2
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
..|+-++-..+---+..=.++|+.+|++.++..||.++|..||..|.|..
T Consensus 27 ~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~ 76 (576)
T KOG2549|consen 27 TNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSL 76 (576)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhc
Confidence 44678888888888899999999999999999999999999999999864
No 74
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=79.82 E-value=3.1 Score=31.95 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH----hHHHhhcCCCCCChhHHHHHHHH
Q psy17766 8 VNDIFERIAAES----SRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 8 v~Diferia~Ea----~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+...+|.++.|. .+-|+-+|++.|+||++|-|+|-
T Consensus 53 l~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIrn 91 (132)
T COG5262 53 LAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIRN 91 (132)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhcC
Confidence 345566666664 55567799999999999999984
No 75
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=79.67 E-value=6.4 Score=28.30 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHH
Q psy17766 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 131 (148)
Q Consensus 77 IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLak 131 (148)
-..++..+|..+|.+..-.++.+|...|. .++.-++..|+-.++|- =|..|++
T Consensus 21 P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~-D~~Kl~R 73 (92)
T cd07978 21 PLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRK-DPKKLAR 73 (92)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhc-CHHHHHH
Confidence 35788999999999999999999999998 55556699999999873 3444443
No 76
>KOG0871|consensus
Probab=79.18 E-value=5 Score=31.79 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=46.3
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 128 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpge 128 (148)
..+.+.|-+++...--.+..-|+.||...|....|+||.+.+++.|..-|==||
T Consensus 30 ~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~e 83 (156)
T KOG0871|consen 30 VRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGE 83 (156)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHH
Confidence 678888988877777788899999999999999999999999999998553343
No 77
>KOG1757|consensus
Probab=77.94 E-value=0.96 Score=34.44 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=42.0
Q ss_pred cccee---e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 69 TLSVL---V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 69 i~kvL---v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
|+|.| + ..+-..+...+-+++.++.-.+.+-|.+-+.--|-..||||+.|-|+|
T Consensus 36 ihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiR 95 (131)
T KOG1757|consen 36 IHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 95 (131)
T ss_pred HHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeec
Confidence 56666 3 567778888787777777777777777777777888999999999998
No 78
>PF15510 CENP-W: Centromere kinetochore component W
Probab=75.09 E-value=2.9 Score=30.80 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766 83 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 126 (148)
Q Consensus 83 ~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp 126 (148)
.=+|.++ +..|+|+||---|..||+.+|-..+++.|.+.+|.
T Consensus 57 vhLncLL--FvhrLAEEaRtnA~EnK~~~Ik~~Hv~AaaKviLK 98 (102)
T PF15510_consen 57 VHLNCLL--FVHRLAEEARTNACENKCGTIKKEHVLAAAKVILK 98 (102)
T ss_pred eehhHHH--HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 4466554 57899999999999999999999999999998875
No 79
>KOG2549|consensus
Probab=74.70 E-value=3.7 Score=38.55 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=29.3
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+.|+.+|+++++++||.++|..||..|.|.
T Consensus 45 ikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~ 75 (576)
T KOG2549|consen 45 IKEIVQDAAKFMVHSKRTKLTVDDVDYALRS 75 (576)
T ss_pred HHHHHHHHHHHhhcCCCCcCcHHHHHHHHhh
Confidence 5678999999999999999999999999998
No 80
>PLN00121 histone H3; Provisional
Probab=69.91 E-value=6.2 Score=30.61 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=24.4
Q ss_pred HHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 17 AESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 17 ~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
+++..++.+.||.||.++|||-|.|| -|+
T Consensus 106 ed~~lca~HakRVTl~~kD~~L~~ri--rg~ 134 (136)
T PLN00121 106 EDTNLCAIHAKRVTIMPKDIQLARRI--RGE 134 (136)
T ss_pred hhhHHHHHHhcceecchhhHHHHHHh--ccc
Confidence 36677889999999999999999985 454
No 81
>PTZ00018 histone H3; Provisional
Probab=68.73 E-value=6.6 Score=30.48 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.9
Q ss_pred HHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 17 AESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 17 ~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+++..++.+.||.||.++|||-|.|+
T Consensus 106 ed~~lca~HakRVTl~~kD~~L~~ri 131 (136)
T PTZ00018 106 EDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_pred hhhHHHHHhhcceecchhhHHHHHHh
Confidence 36677889999999999999999985
No 82
>PF15510 CENP-W: Centromere kinetochore component W
Probab=67.27 E-value=8.4 Score=28.38 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=32.1
Q ss_pred HHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCC
Q psy17766 11 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 45 (148)
Q Consensus 11 iferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lp 45 (148)
...|+|+||---|.-||+.+|-...++.|.+.+|.
T Consensus 64 FvhrLAEEaRtnA~EnK~~~Ik~~Hv~AaaKviLK 98 (102)
T PF15510_consen 64 FVHRLAEEARTNACENKCGTIKKEHVLAAAKVILK 98 (102)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 45799999999999999999999999999998875
No 83
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=66.86 E-value=7.1 Score=27.23 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=28.5
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr 41 (148)
+-.++.+-.+.++.+---.|++.||+||++.|+.-..|
T Consensus 34 l~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 34 LTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 44566677778888888889999999999999876554
No 84
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=66.71 E-value=18 Score=25.60 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=40.1
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCC---CccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKR---STITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr---~Tlt~reIqtAvrl~ 124 (148)
.+++.....+|..+-.-+.-.|.++|..+...... ..|.|++|+.|.|.+
T Consensus 32 ~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rrl 84 (85)
T cd08048 32 QSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRRL 84 (85)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHh
Confidence 45666666677777777778899999988877655 899999999999975
No 85
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=64.38 E-value=22 Score=27.14 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhC
Q psy17766 78 NIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 125 (148)
Q Consensus 78 S~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~l 125 (148)
..+...-|--|..--...|..+|...+.+.+|.+|+..|++.|+..-+
T Consensus 31 eprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~ 78 (129)
T PF02291_consen 31 EPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRL 78 (129)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 455556666777777778889999999999999999999999998654
No 86
>KOG0870|consensus
Probab=61.61 E-value=24 Score=28.50 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=35.3
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
.+||+.|...|-.--.=+.-.+..=|..+|+.++|+||++.|+-.|.+=+
T Consensus 29 vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Ei 78 (172)
T KOG0870|consen 29 VSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEI 78 (172)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHh
Confidence 46777776655443333333445566788999999999999999998743
No 87
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=60.91 E-value=7.5 Score=27.79 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=16.8
Q ss_pred chhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 2 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 2 ~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+|..++.+-.-.+..+|..+|...++..|+..|+-.++|-
T Consensus 26 ~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~ 66 (93)
T PF02269_consen 26 DLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRK 66 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhc
Confidence 35777888888889999999999999999999999999884
No 88
>KOG1745|consensus
Probab=60.25 E-value=2.7 Score=32.72 Aligned_cols=25 Identities=44% Similarity=0.470 Sum_probs=21.2
Q ss_pred HHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 21 RLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 21 ~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
-++.+.|+.||-++|||-|.|+ +||
T Consensus 111 lcAihAkRVTimpkdiQlArri--rg~ 135 (137)
T KOG1745|consen 111 LCAIHAKRVTIMPKDIQLARRI--RGE 135 (137)
T ss_pred hhhhccceeEecccceehhhhc--ccC
Confidence 3567799999999999999995 665
No 89
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=58.67 E-value=28 Score=24.93 Aligned_cols=40 Identities=10% Similarity=0.314 Sum_probs=32.6
Q ss_pred chhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 2 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 2 ~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.++..+|.+-.-.+..+|...|. .++.-++..|+-.++|-
T Consensus 27 ~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~ 66 (92)
T cd07978 27 DLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRK 66 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhc
Confidence 35677788888888999999998 66666699999999874
No 90
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=57.72 E-value=33 Score=26.21 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhC
Q psy17766 6 SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 44 (148)
Q Consensus 6 sfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~L 44 (148)
.|..--.-.|-.+|...+.+.+|.+|+..|++.|+..-+
T Consensus 40 EfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~ 78 (129)
T PF02291_consen 40 EFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRL 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 445555556778899999999999999999999999643
No 91
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=57.52 E-value=38 Score=30.39 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=75.1
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc-----------cccccccccccccccccc--CCCccceee----
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE-----------LAKHAVSEGTKAVTKYTS--SNDTLSVLV---- 74 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge-----------LakhAv~eG~kav~k~~s--Skyi~kvLv---- 74 (148)
.+.++.||...+...++..|+..+++.|+..+.+|- .-..|.-|.-+|+-.+.. ...++++-+
T Consensus 264 l~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg 343 (495)
T TIGR01241 264 LANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRG 343 (495)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecC
Confidence 456777888888888888999999999999887652 112355555566644332 234455442
Q ss_pred --eccc----h--HHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 --LPIN----I--KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 --~~IS----~--kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
.|.. . ..+.--..+.+++--.+|.-|+.-.-+.+.++-...|++.|.++
T Consensus 344 ~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~Dl~~At~l 400 (495)
T TIGR01241 344 QALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNI 400 (495)
T ss_pred CccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 1111 1 11212355667777777888888888888888999999999887
No 92
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=54.80 E-value=61 Score=30.47 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=70.3
Q ss_pred HHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccc-----------cccccccccccc--cccCCCcccee-e--
Q psy17766 11 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK-----------HAVSEGTKAVTK--YTSSNDTLSVL-V-- 74 (148)
Q Consensus 11 iferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLak-----------hAv~eG~kav~k--~~sSkyi~kvL-v-- 74 (148)
=++.++.||...+...++..|+..|+..|...+.||--.+ -|.-|.-+|+-. +.....++||- +
T Consensus 360 dl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~pr 439 (644)
T PRK10733 360 DLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR 439 (644)
T ss_pred HHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEecc
Confidence 3567889999999999999999999999998888873222 133344455532 23344566665 2
Q ss_pred ---eccch-----HHHHH-HHHHHHHHHHHHHHHhchhhhcc--CCCccChHHHHHHHHh
Q psy17766 75 ---LPINI-----KAMSI-MNSFVNDIFERIAAESSRLAHYN--KRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ---~~IS~-----kam~i-mnsfv~DiferIa~EA~~La~~~--kr~Tlt~reIqtAvrl 123 (148)
+|... ..+.. -..+.++|---++..|+.-.-+. .-+|-.+.|+|.|..|
T Consensus 440 g~~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~l 499 (644)
T PRK10733 440 GRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNL 499 (644)
T ss_pred CCCcceeEECCCcccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 22211 11100 12344555555566666666664 4567788999999874
No 93
>KOG1745|consensus
Probab=53.61 E-value=8.8 Score=29.89 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=29.7
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
+.+-+.|..-+---....+--+-+..--.|...||.||-|.|||-|.|+-
T Consensus 84 Lrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrir 133 (137)
T KOG1745|consen 84 LRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 133 (137)
T ss_pred ceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcc
Confidence 34444444433332222222222333456677999999999999999953
No 94
>KOG3334|consensus
Probab=49.99 E-value=38 Score=26.73 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=38.2
Q ss_pred eccc---hHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhC
Q psy17766 75 LPIN---IKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 125 (148)
Q Consensus 75 ~~IS---~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~l 125 (148)
+||- .+-.+-|--|-.----.|.+.|.-.+.+.+|.||+..|++.|++...
T Consensus 26 ~GI~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~ 79 (148)
T KOG3334|consen 26 LGIQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRV 79 (148)
T ss_pred cCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 5654 44444444444445567899999999999999999999999998653
No 95
>KOG1757|consensus
Probab=48.66 E-value=12 Score=28.52 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhHHHhhcC----CCCCChhHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNK----RSTITSREIQTAVR 41 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~k----k~Tlt~reiqtAvr 41 (148)
+...|+|.+..|..+|+.... -+.||||.+|-|+|
T Consensus 57 y~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiR 95 (131)
T KOG1757|consen 57 YSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 95 (131)
T ss_pred HHHHHHHHHHHHHHHHcccccccceeeeccchhheeeec
Confidence 456789999999999997643 46799999999988
No 96
>CHL00176 ftsH cell division protein; Validated
Probab=45.18 E-value=90 Score=29.60 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=69.7
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc----------cccccccccccccccc--ccCCCcccee-e----
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE----------LAKHAVSEGTKAVTKY--TSSNDTLSVL-V---- 74 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge----------LakhAv~eG~kav~k~--~sSkyi~kvL-v---- 74 (148)
.+.++.||..++...++..||..|++.|++-++.|- ...-|.-|.-+|+..+ .....++||- +
T Consensus 392 L~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~ 471 (638)
T CHL00176 392 LANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQ 471 (638)
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCC
Confidence 357788898888888889999999999998775542 2223455555566433 2334466655 2
Q ss_pred -eccchH------HHHHHHHHHHHHHHHHHHHhchhhhcc--CCCccChHHHHHHHHh
Q psy17766 75 -LPINIK------AMSIMNSFVNDIFERIAAESSRLAHYN--KRSTITSREIQTAVRL 123 (148)
Q Consensus 75 -~~IS~k------am~imnsfv~DiferIa~EA~~La~~~--kr~Tlt~reIqtAvrl 123 (148)
.|.... ..--=..+.++|.-.++..|+.-.-+. .-+|=.+.|+|.|..+
T Consensus 472 ~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~i 529 (638)
T CHL00176 472 AKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNL 529 (638)
T ss_pred CCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHH
Confidence 111100 000113355566666677777666665 3567789999999863
No 97
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.10 E-value=45 Score=29.93 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=38.8
Q ss_pred eccchHHHHHHHHHHHHH---HHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDI---FERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~Di---ferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
+||+.=.=+.+..+-.|+ ...+++||++....+||.-||..||-.|.|-+
T Consensus 18 lGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~l 70 (450)
T COG5095 18 LGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSL 70 (450)
T ss_pred cCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhc
Confidence 677665545544444444 45678999999999999999999999999864
No 98
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=43.08 E-value=23 Score=31.77 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=27.7
Q ss_pred HHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 14 RIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 14 ria~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
.+..||++.+.++||.-+|..||-.|.|-+
T Consensus 41 ev~qea~KFmvhSKRtvLt~dDis~ALr~l 70 (450)
T COG5095 41 EVCQEASKFMVHSKRTVLTIDDISYALRSL 70 (450)
T ss_pred HHHHHHHHHhhcccceeeeHHhHHHHHHhc
Confidence 468899999999999999999999999973
No 99
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=39.99 E-value=1e+02 Score=21.76 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHhhcCC---CCCChhHHHHHHHHh
Q psy17766 12 FERIAAESSRLAHYNKR---STITSREIQTAVRLL 43 (148)
Q Consensus 12 feria~Ea~~L~~~~kk---~Tlt~reiqtAvrl~ 43 (148)
.-.|.++|..+...... ..|.|++|+.|.|.+
T Consensus 50 VGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rrl 84 (85)
T cd08048 50 VGEIVEEARDVQEEWGEANTGPLQPRHLREAYRRL 84 (85)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHh
Confidence 35677788888877555 899999999999974
No 100
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=38.19 E-value=33 Score=29.11 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=35.9
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.=||.+|=-+.--.-.-+.+.+...|-..+..|||.||.--||-.||.
T Consensus 126 kMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~ 173 (286)
T COG5208 126 KMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVK 173 (286)
T ss_pred hheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHH
Confidence 446666544333333334478888999999999999999999999986
No 101
>KOG3334|consensus
Probab=37.70 E-value=91 Score=24.64 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
.-.|-+.|.-.+.+.+|.||+..|++.|++..
T Consensus 47 tt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~ 78 (148)
T KOG3334|consen 47 TTTVLDDAKVYSSHAKKATIDAEDVRLAIQMR 78 (148)
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 34677889999999999999999999999874
No 102
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=35.99 E-value=96 Score=20.27 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHH
Q psy17766 87 SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 134 (148)
Q Consensus 87 sfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv 134 (148)
..++|.|-.+++.....--..++ +|.++|....+ ||..--|+|.
T Consensus 5 ~ii~~~fG~~~~~V~~~Ll~~G~--ltl~~i~~~t~--l~~~~Vk~~L 48 (62)
T PF08221_consen 5 LIIEEHFGEIVAKVGEVLLSRGR--LTLREIVRRTG--LSPKQVKKAL 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-S--EEHHHHHHHHT----HHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHHcCC--cCHHHHHHHhC--CCHHHHHHHH
Confidence 46788898888888766655554 45788888888 7776666664
No 103
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=35.45 E-value=62 Score=28.31 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccc
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 49 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLa 49 (148)
|...-.+.++.||+..+-..++..++..|+..|++-+.|+.-.
T Consensus 336 ~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 336 ASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccccc
Confidence 3334456789999999988899999999999999999986443
No 104
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=35.22 E-value=1.2e+02 Score=28.96 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=55.1
Q ss_pred eccchH-HHHHHHHHHHHHHHHHHHH-------hchhhh------cc--CCCccChHHHHHHHHhhCchHHHHhHHhhhh
Q psy17766 75 LPINIK-AMSIMNSFVNDIFERIAAE-------SSRLAH------YN--KRSTITSREIQTAVRLLLPGELAKHAVSEGT 138 (148)
Q Consensus 75 ~~IS~k-am~imnsfv~DiferIa~E-------A~~La~------~~--kr~Tlt~reIqtAvrl~lpgeLakhAv~eg~ 138 (148)
+|+|.. |-.+..+..-|.||.+++. |+-|.. .. .-..|+-++|...++++.-|+++|.|+.|-.
T Consensus 467 ygLs~~LA~~~~~~~~~~~FEel~e~~v~p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~~~g~iake~iee~l 546 (631)
T COG2511 467 YGLSKELAEQLASDPRVDLFEELVEKGVDPTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLVSEGKIAKEAIEEIL 546 (631)
T ss_pred hCCCHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHHhcccchHHHHHHHH
Confidence 688876 5567888899999999982 222221 12 2334899999999999999999999999999
Q ss_pred hhhhccc
Q psy17766 139 KAVTKYT 145 (148)
Q Consensus 139 kav~~~~ 145 (148)
+++....
T Consensus 547 ~~l~~~p 553 (631)
T COG2511 547 KALAENP 553 (631)
T ss_pred HHHHhCC
Confidence 9988644
No 105
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=34.72 E-value=1.2e+02 Score=20.26 Aligned_cols=37 Identities=11% Similarity=0.279 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766 5 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41 (148)
Q Consensus 5 nsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr 41 (148)
-.++.+.+..|+..+...+...+|...+..|+..|..
T Consensus 33 tdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 33 TDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3344555588888888999999999999999998875
No 106
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=34.44 E-value=60 Score=26.98 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=43.4
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhc--cCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHY--NKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~--~kr~Tlt~reIqtAvrl 123 (148)
..|+..|...+-..+..=+-++..|--+|+-| .+..+||..+|+..|.-
T Consensus 148 ~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~ 198 (326)
T PRK07452 148 VKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSN 198 (326)
T ss_pred CCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc
Confidence 77999999999999888889999999999999 56889999999987653
No 107
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=33.79 E-value=88 Score=24.43 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 11 IFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 11 iferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
...-+..||...|.-..|+||.+..|..|..-
T Consensus 46 Fi~~lsseAne~ce~EaKKTIa~EHviKALen 77 (148)
T COG5150 46 FINMLSSEANEACEEEAKKTIAYEHVIKALEN 77 (148)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 34567899999999999999999999999875
No 108
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=33.77 E-value=1.5e+02 Score=21.31 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhchhhhccC-CCccChHHHHHHHHhh
Q psy17766 76 PINIKAMSIMNSFVNDIFERIAAESSRLAHYNK-RSTITSREIQTAVRLL 124 (148)
Q Consensus 76 ~IS~kam~imnsfv~DiferIa~EA~~La~~~k-r~Tlt~reIqtAvrl~ 124 (148)
++|....-+|..+-.=+.-.|.++|.......+ -..|+|.+|..|.|-|
T Consensus 41 sv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rrL 90 (90)
T PF04719_consen 41 SVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYRRL 90 (90)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHhC
Confidence 455555556777777777778888887766543 3499999999998853
No 109
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=31.58 E-value=56 Score=28.58 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchH
Q psy17766 87 SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 128 (148)
Q Consensus 87 sfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpge 128 (148)
.|...-.+.++.||+..|-..++..++..|+..|++-+.|+.
T Consensus 335 g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 335 GASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccc
Confidence 455556678899999999888899999999999999999864
No 110
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=30.94 E-value=52 Score=30.34 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=22.2
Q ss_pred HHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 94 ERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 94 erIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..|..||..+|+..++..|+..+|+.|+.
T Consensus 476 ~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~ 504 (509)
T PF13654_consen 476 ADLLREANYWARKEGAKVITAEHVEQAIE 504 (509)
T ss_dssp HHHHHHHHHHHHHCT-SSB-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 55678888888888888888888888875
No 111
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=30.13 E-value=47 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.7
Q ss_pred HHhHHHhhcCCCCCChhHHHHHHHHhCCcccc
Q psy17766 18 ESSRLAHYNKRSTITSREIQTAVRLLLPGELA 49 (148)
Q Consensus 18 Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLa 49 (148)
=|.-+|-.++|..+++.||+.+++++|+--+.
T Consensus 284 aArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~ 315 (337)
T TIGR02030 284 AAKALAAFEGRTEVTVDDIRRVAVLALRHRLR 315 (337)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 34456778999999999999999999986653
No 112
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=30.00 E-value=92 Score=21.19 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 88 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 88 fv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
++|.++-.+..||.+|+... -.|++||-.|.+.
T Consensus 3 i~nRl~~~~~~ea~~l~~eg---vas~~~ID~~~~~ 35 (97)
T PF00725_consen 3 IVNRLLAALLNEAARLVEEG---VASPEDIDRAMRY 35 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTT---SSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 46888889999999999976 4589999999997
No 113
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=27.72 E-value=86 Score=29.40 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=27.4
Q ss_pred HHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccc
Q psy17766 15 IAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 48 (148)
Q Consensus 15 ia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeL 48 (148)
+..=|--+|..+++.+++..||+.|++++|+..+
T Consensus 276 ~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 276 MARAARALAALDGRRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhc
Confidence 3444556788899999999999999999995443
No 114
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=27.41 E-value=96 Score=28.05 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 46 (148)
Q Consensus 10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg 46 (148)
.-+..|+.||+.+|...++..|+..|+..|+.-++..
T Consensus 391 AdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 391 ADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 3466789999999999999999999999999988664
No 115
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=24.97 E-value=81 Score=27.75 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=27.9
Q ss_pred HHHhHHHhhcCCCCCChhHHHHHHHHhCCcccc
Q psy17766 17 AESSRLAHYNKRSTITSREIQTAVRLLLPGELA 49 (148)
Q Consensus 17 ~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLa 49 (148)
.-|--+|-.++|..+++.||+.+++++|+--+.
T Consensus 296 raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 296 RAAKALAAFEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 344567888999999999999999999997664
No 116
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=24.67 E-value=53 Score=28.58 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=25.4
Q ss_pred hchhhhccCCCccChHHHHHHHHhhCchHH
Q psy17766 100 SSRLAHYNKRSTITSREIQTAVRLLLPGEL 129 (148)
Q Consensus 100 A~~La~~~kr~Tlt~reIqtAvrl~lpgeL 129 (148)
|.-+|-.++|..+++.||+.+++++|+.-+
T Consensus 285 ArA~Aal~GR~~V~~dDv~~~a~~vL~HR~ 314 (337)
T TIGR02030 285 AKALAAFEGRTEVTVDDIRRVAVLALRHRL 314 (337)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 335677799999999999999999998655
No 117
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=24.50 E-value=83 Score=29.49 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=29.1
Q ss_pred HHHHHhchhhhccCCCccChHHHHHHHHhhCchHH
Q psy17766 95 RIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 129 (148)
Q Consensus 95 rIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeL 129 (148)
.+..=|--+|..+++.+++..||+.|++|+|+.-+
T Consensus 275 ~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 275 VMARAARALAALDGRRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhc
Confidence 34455557788999999999999999999998655
No 118
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=24.40 E-value=1.1e+02 Score=26.11 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=47.8
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 126 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp 126 (148)
+.|+..|...+-.-+..=+--|+.|--+|+-|..-.+||..||+..|--..+
T Consensus 158 l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~ 209 (334)
T COG1466 158 LKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAE 209 (334)
T ss_pred CCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhcccc
Confidence 7899999999999999999999999999999998889999999999876555
No 119
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=24.34 E-value=1e+02 Score=26.17 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=30.4
Q ss_pred hHHHHHH-HHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 6 SFVNDIF-ERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 6 sfv~Dif-eria~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+.+..|| +.+...|-+-+..|||+||..-||-.||.-
T Consensus 137 ak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~k 174 (286)
T COG5208 137 AKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKK 174 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHH
Confidence 3444554 667888999999999999999999999975
No 120
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=23.42 E-value=89 Score=21.44 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=25.2
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCc-cChHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRST-ITSREIQTA 120 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~T-lt~reIqtA 120 (148)
+.||..|+..+.-+++=+-..-...|...++..+... +...+++.-
T Consensus 18 tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki 64 (72)
T PF09415_consen 18 TKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKI 64 (72)
T ss_dssp -EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7888888875544443333333444444555566666 888888763
No 121
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=23.29 E-value=1.6e+02 Score=26.47 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=36.7
Q ss_pred HHHHHHHhchhhhccCCCccChHHHHHHHHhhCch-----------HHHHhHHhhhhhhhhc
Q psy17766 93 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG-----------ELAKHAVSEGTKAVTK 143 (148)
Q Consensus 93 ferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg-----------eLakhAv~eg~kav~~ 143 (148)
.+.++.||...+...++..|+..+++.|+.-+.+| +.-..|.-|.-+||..
T Consensus 264 l~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~ 325 (495)
T TIGR01241 264 LANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVG 325 (495)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHH
Confidence 45667788777777788899999999999987653 2334566666666654
No 122
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=22.56 E-value=93 Score=20.40 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.1
Q ss_pred CccChHHHHHHHHhhCchHHHHhHHh
Q psy17766 110 STITSREIQTAVRLLLPGELAKHAVS 135 (148)
Q Consensus 110 ~Tlt~reIqtAvrl~lpgeLakhAv~ 135 (148)
......+++.+.+-++|++++.|.-.
T Consensus 18 ~~~~~~~l~~~w~~ivg~~l~~~~~~ 43 (89)
T PF05258_consen 18 RALQLARLQQNWKQIVGPELAQHTRP 43 (89)
T ss_pred hhHHHHHHHHHHHHHhCHHHHccEEE
Confidence 45567788999999999999998643
No 123
>smart00350 MCM minichromosome maintenance proteins.
Probab=22.44 E-value=1.8e+02 Score=26.38 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=25.5
Q ss_pred HHHHHHhchhhhccCCCccChHHHHHHHHhhC
Q psy17766 94 ERIAAESSRLAHYNKRSTITSREIQTAVRLLL 125 (148)
Q Consensus 94 erIa~EA~~La~~~kr~Tlt~reIqtAvrl~l 125 (148)
|-+..-|--+|+...+.++++.|++.|++|+.
T Consensus 474 ~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 474 ESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 44555566788889999999999999999874
No 124
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=22.37 E-value=1e+02 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=24.8
Q ss_pred HHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766 17 AESSRLAHYNKRSTITSREIQTAVRLLLPG 46 (148)
Q Consensus 17 ~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg 46 (148)
.=|--+|..+++.++++.||+.|++++|+-
T Consensus 232 r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 232 RAAKAHAALHGRTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Confidence 334456778999999999999999999943
No 125
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=21.99 E-value=1.4e+02 Score=25.18 Aligned_cols=50 Identities=30% Similarity=0.258 Sum_probs=43.8
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 126 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp 126 (148)
..|+..|+..+-..+..=+..+..|--+|+-|.+ +||..+|+..|--...
T Consensus 153 ~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~--~It~edV~~~v~~~~e 202 (328)
T PRK08487 153 LDIDQNALNHLYFIHNEDLALAANELEKLAILNE--PITLKDIQELVFGLGS 202 (328)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC--CCCHHHHHHHhccccc
Confidence 7899999999999998889999999999999965 7999999998754444
No 126
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=21.90 E-value=74 Score=21.47 Aligned_cols=36 Identities=28% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766 91 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 126 (148)
Q Consensus 91 DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp 126 (148)
+.-+.|+.+...-.....+..+|..|||..|.-.|-
T Consensus 35 ~~~~~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~ 70 (90)
T PF03477_consen 35 EDAEEIASEVENKLYDSGKEEISTEEIQDIVENALM 70 (90)
T ss_dssp T-HHHHHHHHHTC-ST----TEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCeeHHHHHHHHHHHHH
Confidence 345566666665555556669999999999986554
No 127
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=21.42 E-value=1.4e+02 Score=26.02 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=30.5
Q ss_pred HHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccc
Q psy17766 15 IAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 49 (148)
Q Consensus 15 ia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLa 49 (148)
+..-|.-+|-.++|..+++.||+.++.++|+.-+.
T Consensus 278 l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~~ 312 (334)
T PRK13407 278 LLRAARALAAFEGAEAVGRSHLRSVATMALSHRLR 312 (334)
T ss_pred HHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhcc
Confidence 66777788899999999999999999999987664
No 128
>PF08118 MDM31_MDM32: Yeast mitochondrial distribution and morphology (MDM) proteins ; InterPro: IPR012571 Proteins in this family are yeast mitochondrial inner membrane proteins MDM31 and MDM32. These proteins are required for the maintenance of mitochondrial morphology, and the stability of mitochondrial DNA [].; GO: 0007005 mitochondrion organization, 0005743 mitochondrial inner membrane
Probab=21.01 E-value=1.3e+02 Score=28.05 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=35.2
Q ss_pred chhHhHHHHHHHHHHHHHhHHHhhcCC-CCCChhHHHHHHHHhCCc
Q psy17766 2 SIMNSFVNDIFERIAAESSRLAHYNKR-STITSREIQTAVRLLLPG 46 (148)
Q Consensus 2 ~imnsfv~Diferia~Ea~~L~~~~kk-~Tlt~reiqtAvrl~Lpg 46 (148)
.+|+.+..+++|-.|.-...=.....| +.++.+-+|-|+.++|.|
T Consensus 453 gLmDdiS~evYdafa~~V~d~~~R~~R~kkVg~WSlql~~Q~ll~g 498 (503)
T PF08118_consen 453 GLMDDISAEVYDAFAKYVADEEARIRRLKKVGFWSLQLAAQLLLLG 498 (503)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhceeeehhHHHHHHHHHHHh
Confidence 468888999999888877644333333 678999999999999986
No 129
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=20.73 E-value=89 Score=27.49 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=25.9
Q ss_pred hchhhhccCCCccChHHHHHHHHhhCchHH
Q psy17766 100 SSRLAHYNKRSTITSREIQTAVRLLLPGEL 129 (148)
Q Consensus 100 A~~La~~~kr~Tlt~reIqtAvrl~lpgeL 129 (148)
|.-+|-.++|..+++.||+.+++++|+.-+
T Consensus 298 ArA~Aal~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 298 AKALAAFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 445778899999999999999999998655
No 130
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=20.35 E-value=1.2e+02 Score=26.31 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q psy17766 79 IKAMSIMNSFVNDIFERIAAESS 101 (148)
Q Consensus 79 ~kam~imnsfv~DiferIa~EA~ 101 (148)
-.|..-|+..++|||+||.....
T Consensus 24 ~~aL~~L~~v~~diF~rI~~Rv~ 46 (297)
T PF11945_consen 24 ADALEYLDKVSNDIFSRISARVE 46 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999987665
No 131
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=20.13 E-value=2.3e+02 Score=22.17 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=38.7
Q ss_pred eccchHHHHHH-HHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIM-NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~im-nsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
+-..+.|-.|+ |+.+ .+..-+..||...|....|.||.+.+|-.|..=+
T Consensus 29 l~ftKearei~in~ci-eFi~~lsseAne~ce~EaKKTIa~EHviKALenL 78 (148)
T COG5150 29 LVFTKEAREIFINACI-EFINMLSSEANEACEEEAKKTIAYEHVIKALENL 78 (148)
T ss_pred ccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhc
Confidence 45567777774 4444 5666788999999999999999999999998743
Done!