Query psy17766
Match_columns 148
No_of_seqs 202 out of 396
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:18:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_B Histone H2B; histone-fo 100.0 4.5E-43 1.5E-47 264.2 4.8 87 62-148 35-126 (126)
2 2nqb_D Histone H2B; nucleosome 100.0 6.7E-43 2.3E-47 262.3 4.9 87 62-148 32-123 (123)
3 1tzy_B Histone H2B; histone-fo 100.0 2.2E-34 7.5E-39 216.9 1.7 67 1-67 60-126 (126)
4 2nqb_D Histone H2B; nucleosome 100.0 3.2E-34 1.1E-38 215.2 1.8 67 1-67 57-123 (123)
5 2jss_A Chimera of histone H2B. 100.0 1E-31 3.5E-36 213.9 5.2 129 1-131 27-177 (192)
6 2jss_A Chimera of histone H2B. 100.0 3.2E-31 1.1E-35 211.0 4.7 85 63-147 3-92 (192)
7 1f1e_A Histone fold protein; a 99.4 1.5E-12 5.2E-17 100.8 9.8 115 4-126 31-149 (154)
8 3b0c_W CENP-W, centromere prot 99.0 1.7E-10 5.6E-15 79.1 4.7 52 75-126 21-72 (76)
9 3b0c_W CENP-W, centromere prot 98.7 1.5E-08 5.2E-13 69.3 4.5 44 2-45 29-72 (76)
10 1b67_A Protein (histone HMFA); 98.4 2.9E-07 1E-11 61.1 4.9 50 75-124 18-67 (68)
11 1b67_A Protein (histone HMFA); 97.8 2.3E-05 8E-10 51.7 4.4 41 3-43 27-67 (68)
12 2yfw_B Histone H4, H4; cell cy 97.8 3E-05 1E-09 55.7 4.9 50 75-124 45-94 (103)
13 1tzy_D Histone H4-VI; histone- 97.7 3.5E-05 1.2E-09 55.3 4.9 50 75-124 45-94 (103)
14 1ku5_A HPHA, archaeal histon; 97.6 7.5E-05 2.6E-09 49.7 5.1 48 75-122 22-69 (70)
15 2l5a_A Histone H3-like centrom 97.5 0.00062 2.1E-08 55.7 10.0 50 75-124 177-226 (235)
16 1f1e_A Histone fold protein; a 97.5 0.00013 4.3E-09 56.3 5.2 44 3-46 107-150 (154)
17 1id3_C Histone H2A.1; nucleoso 97.5 6.2E-05 2.1E-09 56.5 3.2 55 68-122 30-89 (131)
18 2nqb_C Histone H2A; nucleosome 97.4 0.00023 7.8E-09 52.9 5.2 55 68-122 28-87 (123)
19 2f8n_G Core histone macro-H2A. 97.4 0.00023 8E-09 52.6 5.2 55 68-122 27-86 (120)
20 1id3_B Histone H4; nucleosome 97.3 0.00027 9.4E-09 50.7 5.1 50 75-124 44-93 (102)
21 1tzy_A Histone H2A-IV; histone 97.3 0.0003 1E-08 52.6 5.2 55 68-122 30-89 (129)
22 1f66_C Histone H2A.Z; nucleoso 97.3 0.0003 1E-08 52.5 5.0 55 68-122 32-92 (128)
23 2hue_C Histone H4; mini beta s 97.2 0.00029 9.8E-09 48.7 4.1 50 75-124 26-75 (84)
24 2ly8_A Budding yeast chaperone 97.2 0.0011 3.8E-08 49.3 7.4 95 12-123 7-111 (121)
25 2f8n_K Histone H2A type 1; nuc 97.2 0.00036 1.2E-08 53.5 4.9 55 68-122 49-108 (149)
26 1taf_B TFIID TBP associated fa 97.2 0.00059 2E-08 46.2 5.3 49 75-123 22-70 (70)
27 3b0c_T CENP-T, centromere prot 97.0 0.00094 3.2E-08 48.6 5.4 49 75-123 23-71 (111)
28 2yfw_B Histone H4, H4; cell cy 97.0 0.0009 3.1E-08 47.9 4.9 40 4-43 55-94 (103)
29 1tzy_D Histone H4-VI; histone- 97.0 0.001 3.4E-08 47.6 4.9 40 4-43 55-94 (103)
30 1n1j_A NF-YB; histone-like PAI 96.9 0.0017 5.7E-08 45.3 5.7 48 75-122 26-73 (93)
31 1n1j_B NF-YC; histone-like PAI 96.9 0.0013 4.5E-08 46.4 5.0 48 75-122 36-83 (97)
32 1ku5_A HPHA, archaeal histon; 96.8 0.0015 5.2E-08 43.3 4.3 38 4-41 32-69 (70)
33 4g92_C HAPE; transcription fac 96.7 0.0022 7.5E-08 47.0 4.9 48 75-122 58-105 (119)
34 1jfi_A Transcription regulator 96.6 0.0011 3.7E-08 47.1 2.9 48 75-122 28-75 (98)
35 1taf_A TFIID TBP associated fa 96.5 0.0044 1.5E-07 41.7 5.0 51 75-125 17-67 (68)
36 1taf_B TFIID TBP associated fa 96.4 0.0034 1.2E-07 42.4 4.1 36 7-42 35-70 (70)
37 1id3_B Histone H4; nucleosome 96.4 0.0046 1.6E-07 44.3 4.9 40 4-43 54-93 (102)
38 3ksy_A SOS-1, SON of sevenless 96.3 0.009 3.1E-07 56.9 8.1 95 28-122 62-167 (1049)
39 3b0b_B CENP-S, centromere prot 96.3 0.0042 1.4E-07 45.2 4.4 49 75-123 38-86 (107)
40 4dra_A Centromere protein S; D 96.3 0.0047 1.6E-07 45.4 4.6 49 75-123 46-94 (113)
41 3v9r_A MHF1, uncharacterized p 96.3 0.0048 1.7E-07 43.6 4.5 49 75-123 31-79 (90)
42 3nqj_A Histone H3-like centrom 96.2 0.01 3.6E-07 41.2 5.9 49 75-123 26-74 (82)
43 2hue_B Histone H3; mini beta s 96.2 0.0095 3.2E-07 40.9 5.4 49 75-123 24-72 (77)
44 2hue_C Histone H4; mini beta s 96.1 0.005 1.7E-07 42.4 3.9 40 4-43 36-75 (84)
45 3vh5_A CENP-S; histone fold, c 96.0 0.009 3.1E-07 45.4 5.0 49 75-123 38-86 (140)
46 2byk_B Chrac-14; nucleosome sl 95.8 0.017 5.7E-07 42.9 5.7 50 75-124 27-76 (128)
47 3b0c_T CENP-T, centromere prot 95.7 0.015 5E-07 42.2 4.9 39 4-42 33-71 (111)
48 2yfv_A Histone H3-like centrom 95.5 0.022 7.6E-07 40.8 5.1 49 75-123 51-99 (100)
49 2f8n_G Core histone macro-H2A. 95.4 0.021 7.2E-07 42.0 4.9 36 7-42 52-87 (120)
50 2byk_A Chrac-16; nucleosome sl 95.3 0.029 1E-06 42.2 5.5 49 74-122 35-84 (140)
51 1n1j_A NF-YB; histone-like PAI 95.2 0.036 1.2E-06 38.4 5.5 38 4-41 36-73 (93)
52 2nqb_C Histone H2A; nucleosome 95.2 0.026 8.8E-07 41.7 4.9 36 7-42 53-88 (123)
53 3nqu_A Histone H3-like centrom 95.2 0.033 1.1E-06 42.3 5.4 49 76-124 85-133 (140)
54 1id3_C Histone H2A.1; nucleoso 95.2 0.027 9.2E-07 42.0 4.9 36 7-42 55-90 (131)
55 1taf_A TFIID TBP associated fa 95.1 0.051 1.7E-06 36.4 5.7 40 4-43 27-66 (68)
56 1tzy_A Histone H2A-IV; histone 95.0 0.031 1.1E-06 41.6 4.9 36 7-42 55-90 (129)
57 1jfi_B DR1 protein, transcript 95.0 0.043 1.5E-06 43.1 5.9 49 75-123 32-80 (179)
58 3r45_A Histone H3-like centrom 95.0 0.032 1.1E-06 43.0 5.0 49 75-123 100-148 (156)
59 1f66_C Histone H2A.Z; nucleoso 94.9 0.034 1.2E-06 41.3 4.8 35 8-42 59-93 (128)
60 2f8n_K Histone H2A type 1; nuc 94.9 0.035 1.2E-06 42.4 4.9 36 7-42 74-109 (149)
61 1tzy_C Histone H3; histone-fol 94.8 0.047 1.6E-06 41.1 5.4 49 75-123 83-131 (136)
62 3nqj_A Histone H3-like centrom 94.7 0.045 1.6E-06 37.9 4.7 36 10-47 42-77 (82)
63 2ly8_A Budding yeast chaperone 94.5 0.065 2.2E-06 39.7 5.4 39 4-42 73-111 (121)
64 2hue_B Histone H3; mini beta s 94.4 0.048 1.6E-06 37.4 4.2 36 10-47 40-75 (77)
65 3b0b_B CENP-S, centromere prot 94.3 0.042 1.4E-06 39.8 3.9 40 3-42 47-86 (107)
66 1n1j_B NF-YC; histone-like PAI 94.1 0.063 2.1E-06 37.7 4.5 34 9-42 51-84 (97)
67 3v9r_A MHF1, uncharacterized p 94.1 0.051 1.8E-06 38.2 3.9 39 4-42 41-79 (90)
68 4dra_A Centromere protein S; D 93.7 0.061 2.1E-06 39.4 3.9 40 3-42 55-94 (113)
69 4g92_C HAPE; transcription fac 93.2 0.066 2.3E-06 39.0 3.3 32 11-42 75-106 (119)
70 3vh5_A CENP-S; histone fold, c 93.2 0.1 3.4E-06 39.6 4.4 40 3-42 47-86 (140)
71 1h3o_B Transcription initiatio 93.0 0.2 6.8E-06 34.2 5.3 48 75-122 22-69 (76)
72 2yfv_A Histone H3-like centrom 92.8 0.1 3.5E-06 37.3 3.8 32 11-42 68-99 (100)
73 1jfi_A Transcription regulator 92.7 0.036 1.2E-06 39.1 1.3 33 10-42 44-76 (98)
74 3nqu_A Histone H3-like centrom 92.1 0.15 5.3E-06 38.5 4.2 33 10-42 100-132 (140)
75 3r45_A Histone H3-like centrom 91.7 0.16 5.6E-06 39.1 4.0 37 9-47 115-151 (156)
76 2byk_B Chrac-14; nucleosome sl 91.6 0.35 1.2E-05 35.6 5.6 38 5-42 38-75 (128)
77 2l5a_A Histone H3-like centrom 91.2 0.33 1.1E-05 39.6 5.5 40 4-43 187-226 (235)
78 1tzy_C Histone H3; histone-fol 90.9 0.25 8.5E-06 37.2 4.2 34 9-42 98-131 (136)
79 1h3o_B Transcription initiatio 90.6 0.42 1.4E-05 32.6 4.8 37 5-41 33-69 (76)
80 1jfi_B DR1 protein, transcript 89.7 0.57 1.9E-05 36.7 5.5 39 4-42 42-80 (179)
81 2byk_A Chrac-16; nucleosome sl 86.1 0.65 2.2E-05 34.8 3.7 32 11-42 53-85 (140)
82 3vlf_B 26S protease regulatory 77.5 3.5 0.00012 27.5 4.5 38 12-49 40-77 (88)
83 3aji_B S6C, proteasome (prosom 74.5 4.7 0.00016 26.1 4.4 35 12-46 40-74 (83)
84 3aji_B S6C, proteasome (prosom 73.6 4.8 0.00017 26.1 4.3 35 93-127 40-74 (83)
85 2dhr_A FTSH; AAA+ protein, hex 73.2 6.8 0.00023 34.3 6.3 112 12-123 240-375 (499)
86 2krk_A 26S protease regulatory 72.2 4.2 0.00014 27.2 3.8 36 12-47 50-85 (86)
87 2dzn_B 26S protease regulatory 71.5 4.8 0.00016 26.3 3.9 37 12-48 37-73 (82)
88 3vlf_B 26S protease regulatory 69.9 4.3 0.00015 27.1 3.4 38 93-130 40-77 (88)
89 2dzn_B 26S protease regulatory 66.1 5.3 0.00018 26.0 3.2 36 94-129 38-73 (82)
90 1bh9_B TAFII28; histone fold, 65.5 18 0.00061 24.9 5.9 51 75-125 32-83 (89)
91 3kw6_A 26S protease regulatory 64.7 7.4 0.00025 24.9 3.7 35 12-46 42-76 (78)
92 3ksy_A SOS-1, SON of sevenless 63.4 11 0.00036 36.0 5.8 63 69-141 27-94 (1049)
93 2krk_A 26S protease regulatory 62.4 5.2 0.00018 26.7 2.6 35 93-127 50-84 (86)
94 3kw6_A 26S protease regulatory 57.4 8 0.00027 24.7 2.8 35 93-127 42-76 (78)
95 1g8p_A Magnesium-chelatase 38 45.0 42 0.0014 26.1 5.7 54 76-129 267-327 (350)
96 1lv7_A FTSH; alpha/beta domain 40.6 25 0.00085 26.5 3.6 34 94-127 222-255 (257)
97 4b4t_J 26S protease regulatory 34.1 28 0.00097 29.9 3.3 36 12-47 358-393 (405)
98 4dra_E Centromere protein X; D 34.1 98 0.0033 21.0 5.4 45 75-123 31-79 (84)
99 2dhr_A FTSH; AAA+ protein, hex 33.6 60 0.002 28.3 5.3 52 93-144 240-302 (499)
100 4b4t_J 26S protease regulatory 32.2 32 0.0011 29.6 3.3 41 88-128 353-393 (405)
101 3b0b_C CENP-X, centromere prot 32.1 92 0.0032 20.9 5.0 44 75-122 27-74 (81)
102 4b4t_I 26S protease regulatory 31.8 34 0.0011 29.8 3.4 36 12-47 392-427 (437)
103 3h4m_A Proteasome-activating n 31.5 37 0.0013 25.7 3.3 36 92-127 226-261 (285)
104 1g8p_A Magnesium-chelatase 38 31.4 52 0.0018 25.5 4.2 36 14-49 293-328 (350)
105 2r44_A Uncharacterized protein 31.2 54 0.0019 25.6 4.3 35 14-48 268-302 (331)
106 3uk6_A RUVB-like 2; hexameric 30.9 1.5E+02 0.0051 23.1 6.9 63 75-137 277-343 (368)
107 3h4m_A Proteasome-activating n 29.9 41 0.0014 25.5 3.3 35 12-46 227-261 (285)
108 4b4t_I 26S protease regulatory 28.9 39 0.0013 29.4 3.3 41 88-128 387-427 (437)
109 4b4t_H 26S protease regulatory 28.7 39 0.0013 29.7 3.3 36 12-47 419-454 (467)
110 1bh9_B TAFII28; histone fold, 28.0 1.4E+02 0.0049 20.2 5.8 33 12-44 50-83 (89)
111 2qz4_A Paraplegin; AAA+, SPG7, 25.7 22 0.00076 26.5 1.0 37 93-129 218-254 (262)
112 2qz4_A Paraplegin; AAA+, SPG7, 24.5 22 0.00074 26.5 0.8 35 13-47 219-253 (262)
113 4b4t_M 26S protease regulatory 24.5 70 0.0024 27.5 4.1 35 12-46 391-425 (434)
114 4b4t_H 26S protease regulatory 23.8 45 0.0015 29.2 2.8 36 92-127 418-453 (467)
115 2r44_A Uncharacterized protein 23.4 58 0.002 25.4 3.2 35 95-129 268-302 (331)
116 2ce7_A Cell division protein F 22.2 96 0.0033 26.8 4.5 110 12-123 225-362 (476)
117 1d6g_A CCK-A-receptor, cholecy 21.9 24 0.0008 21.9 0.4 13 32-44 35-47 (47)
118 3uk6_A RUVB-like 2; hexameric 21.4 75 0.0026 24.9 3.4 37 14-50 301-337 (368)
119 4b4t_L 26S protease subunit RP 21.2 78 0.0027 27.2 3.7 35 12-46 391-425 (437)
No 1
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=100.00 E-value=4.5e-43 Score=264.21 Aligned_cols=87 Identities=83% Similarity=0.999 Sum_probs=82.7
Q ss_pred ccccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhh
Q psy17766 62 KYTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136 (148)
Q Consensus 62 k~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~e 136 (148)
+-+++.|||||| | +|||++||+||||||||||||||.||++|++||||+|||+||||+||||+|||||+||||+|
T Consensus 35 ~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvse 114 (126)
T 1tzy_B 35 KESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114 (126)
T ss_dssp CCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence 445678999999 6 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCC
Q psy17766 137 GTKAVTKYTSSK 148 (148)
Q Consensus 137 g~kav~~~~~~k 148 (148)
|+|||++|+++|
T Consensus 115 GtkAV~ky~ssk 126 (126)
T 1tzy_B 115 GTKAVTKYTSSK 126 (126)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHhcccCCC
Confidence 999999999885
No 2
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=100.00 E-value=6.7e-43 Score=262.32 Aligned_cols=87 Identities=84% Similarity=1.012 Sum_probs=83.4
Q ss_pred ccccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhh
Q psy17766 62 KYTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136 (148)
Q Consensus 62 k~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~e 136 (148)
+-+++.|||||| | +|||++||+||||||||||||||.||++|++||+|+|||+||||+||||+|||||+||||+|
T Consensus 32 ~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvse 111 (123)
T 2nqb_D 32 KESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111 (123)
T ss_dssp CCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence 445678999999 6 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCC
Q psy17766 137 GTKAVTKYTSSK 148 (148)
Q Consensus 137 g~kav~~~~~~k 148 (148)
|+|||++|+++|
T Consensus 112 GtkAV~ky~ss~ 123 (123)
T 2nqb_D 112 GTKAVTKYTSSK 123 (123)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHhcccCCC
Confidence 999999999986
No 3
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.98 E-value=2.2e-34 Score=216.87 Aligned_cols=67 Identities=94% Similarity=1.219 Sum_probs=64.9
Q ss_pred CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCC
Q psy17766 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSN 67 (148)
Q Consensus 1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSk 67 (148)
|+||||||||||||||.||++|++||||+|||+||||+||||+|||||+|||++||++||++|++++
T Consensus 60 m~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ssk 126 (126)
T 1tzy_B 60 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999998863
No 4
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.98 E-value=3.2e-34 Score=215.25 Aligned_cols=67 Identities=97% Similarity=1.237 Sum_probs=65.3
Q ss_pred CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCC
Q psy17766 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSN 67 (148)
Q Consensus 1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSk 67 (148)
|+||||||||||||||.||++|++||+|+|||+||||+||||+|||||+|||++||++||++|++++
T Consensus 57 m~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ss~ 123 (123)
T 2nqb_D 57 MSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999998863
No 5
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.97 E-value=1e-31 Score=213.88 Aligned_cols=129 Identities=53% Similarity=0.676 Sum_probs=116.6
Q ss_pred CchhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCC-------------
Q psy17766 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSN------------- 67 (148)
Q Consensus 1 m~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSk------------- 67 (148)
|++||||++|+||||+.||++|+++++|+|+|+||||+|||++|||||+|||++||++|+++|..++
T Consensus 27 m~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG~kAv~k~~~sk~~~s~s~ragl~f 106 (192)
T 2jss_A 27 MSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQAQSSSARAGLQF 106 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHCSSSCHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhccccccccccccCCCcC
Confidence 6799999999999999999999999999999999999999999999999999999999999996532
Q ss_pred ---Ccccee--e----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHH
Q psy17766 68 ---DTLSVL--V----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 131 (148)
Q Consensus 68 ---yi~kvL--v----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLak 131 (148)
.|+|.| . ..||..|-..|-..+.++...|.+.|.+.++.+|+.+|+|++||.|++ =..||.+
T Consensus 107 Pv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~--nD~eL~~ 177 (192)
T 2jss_A 107 PVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR--GDDELDS 177 (192)
T ss_dssp CHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH--TSHHHHH
T ss_pred CHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh--ccHHHHH
Confidence 255555 1 369999999999999999999999999999999999999999999999 3445443
No 6
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.96 E-value=3.2e-31 Score=211.00 Aligned_cols=85 Identities=72% Similarity=0.936 Sum_probs=81.0
Q ss_pred cccCCCcccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhh
Q psy17766 63 YTSSNDTLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG 137 (148)
Q Consensus 63 ~~sSkyi~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg 137 (148)
-+++.|||||| | +|||++||++||+|++|+||||+.||++|+++++|+|+|+||||+||||+|||||+|||++||
T Consensus 3 ~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG 82 (192)
T 2jss_A 3 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEG 82 (192)
T ss_dssp STTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHH
T ss_pred chHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45678999999 5 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccC
Q psy17766 138 TKAVTKYTSS 147 (148)
Q Consensus 138 ~kav~~~~~~ 147 (148)
+|||++|+++
T Consensus 83 ~kAv~k~~~s 92 (192)
T 2jss_A 83 TRAVTKYSSS 92 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhccc
Confidence 9999999653
No 7
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.39 E-value=1.5e-12 Score=100.80 Aligned_cols=115 Identities=13% Similarity=0.270 Sum_probs=89.4
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccccccccccccccccccCCCcccee----eeccch
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSNDTLSVL----VLPINI 79 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~k~~sSkyi~kvL----v~~IS~ 79 (148)
+...+..+.+.|+.+|..++.+.+|+||++.||..|+.-+==++.--.+--+ + .-..|.|.+ +..||+
T Consensus 31 l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d~~~l~-------l-P~a~V~Ri~k~~g~~RVS~ 102 (154)
T 1f1e_A 31 IYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGEL-------F-GRATVRRILKRAGIERASS 102 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCCSCC-------C-CHHHHHHHHHHTTCCEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCcccccc-------C-CccHHHHHHHHcCCccchH
Confidence 4556778888999999999999999999999999999543111110000000 0 000122222 268999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766 80 KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 126 (148)
Q Consensus 80 kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp 126 (148)
.|...|...+.++.+.|+.+|..++++.+|+||+++||+.|++..||
T Consensus 103 ~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~ 149 (154)
T 1f1e_A 103 DAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.04 E-value=1.7e-10 Score=79.12 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=50.0
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCc
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 126 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lp 126 (148)
.+||+.|+.+|+.++.+++++|+.||..+|+.++|.||+++||+.|++.+|-
T Consensus 21 ~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 21 LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998763
No 9
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.69 E-value=1.5e-08 Score=69.26 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=41.7
Q ss_pred chhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCC
Q psy17766 2 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP 45 (148)
Q Consensus 2 ~imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lp 45 (148)
.+|++++.+++++|+.||..+|++++|+||+++||+.|++.+|-
T Consensus 29 ~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 29 LLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999998763
No 10
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.42 E-value=2.9e-07 Score=61.08 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=48.1
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
..||+.|+..|.....++++.|+++|...+...||.||+++|||.|++.+
T Consensus 18 ~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 18 ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999865
No 11
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.79 E-value=2.3e-05 Score=51.74 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=37.9
Q ss_pred hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
.+.....++++.|+.+|...+.+.||+||+++|||.|++.+
T Consensus 27 ~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 27 ALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 56778899999999999999999999999999999999864
No 12
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.76 E-value=3e-05 Score=55.69 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=48.0
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
..||..+...+...+.++++.|+.+|...+++++|+||+++||+.|++-+
T Consensus 45 ~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 45 KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999854
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.74 E-value=3.5e-05 Score=55.28 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=48.0
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
..||..+...+...+.+.++.|+.+|...+++++|+|||++||+.|++-+
T Consensus 45 ~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 45 KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999854
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.64 E-value=7.5e-05 Score=49.73 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=46.3
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..+|+.+..-+..++.+.++.|+.+|...+++.||+||+++||+.|++
T Consensus 22 ~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 22 ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999986
No 15
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00062 Score=55.72 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=47.6
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
-.||..+..-+...+.+.++.|+.+|..++.+.+|+|+|+.||--|++..
T Consensus 177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 67999999999999999999999999999999999999999999998854
No 16
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.49 E-value=0.00013 Score=56.29 Aligned_cols=44 Identities=16% Similarity=0.381 Sum_probs=41.5
Q ss_pred hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 46 (148)
Q Consensus 3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg 46 (148)
.+..++.++.+.|+.+|..+|++.+|+||+++||+.|++..||.
T Consensus 107 ~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 107 LYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 46788999999999999999999999999999999999999994
No 17
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.47 E-value=6.2e-05 Score=56.52 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=50.7
Q ss_pred Ccccee-----eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVL-----VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvL-----v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|+|.| ...||..|-.+|-..+.++...|.+.|.+.++.+++.+|++|+||.|++
T Consensus 30 rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 30 RVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp HHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 456666 1679999999999999999999999999999999999999999999999
No 18
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.38 E-value=0.00023 Score=52.85 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=50.6
Q ss_pred Ccccee-----eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVL-----VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvL-----v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|+|.| ...||..|-.+|...+.++...|.+.|.+.++.+++.+|++++||.|++
T Consensus 28 ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 28 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp HHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 456666 1679999999999999999999999999999999999999999999999
No 19
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.38 E-value=0.00023 Score=52.60 Aligned_cols=55 Identities=24% Similarity=0.241 Sum_probs=50.5
Q ss_pred Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|+|.|. ..||..|-.+|...+.++...|.+.|.+.++.+++.+|++++||.|++
T Consensus 27 ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 27 RMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4566661 679999999999999999999999999999999999999999999999
No 20
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.34 E-value=0.00027 Score=50.74 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=47.9
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
..||..+..-+...+.+.++.|+.||...+++.+|+|||..||..|.+-+
T Consensus 44 ~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 44 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 78999999999999999999999999999999999999999999999854
No 21
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.31 E-value=0.0003 Score=52.61 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=50.7
Q ss_pred Ccccee-----eeccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVL-----VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvL-----v~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|+|.| ...||..|-.+|-..+.++...|.+.|.+.++.+++.+|++|+||.|++
T Consensus 30 rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 30 RVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 456666 1679999999999999999999999999999999999999999999999
No 22
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.29 E-value=0.0003 Score=52.54 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=50.3
Q ss_pred Ccccee---e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVL---V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvL---v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|+|.| . ..||..|-.+|-..+.++...|.+.|.+.++.+++.+|++|+||.|++
T Consensus 32 ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 32 RIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp HHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 456666 1 379999999999999999999999999999999999999999999998
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.23 E-value=0.00029 Score=48.73 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=47.4
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
..||..+..-+...+.+.++.|+.+|...+++.+|+|+|..||..|.+-+
T Consensus 26 ~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 26 KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 67999999999999999999999999999999999999999999998743
No 24
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0011 Score=49.27 Aligned_cols=95 Identities=24% Similarity=0.280 Sum_probs=71.2
Q ss_pred HHHHHHHHhHHHhhc-CCCCCCh---hHHHHHHHHhCCcc------ccccccccccccccccccCCCccceeeeccchHH
Q psy17766 12 FERIAAESSRLAHYN-KRSTITS---REIQTAVRLLLPGE------LAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKA 81 (148)
Q Consensus 12 feria~Ea~~L~~~~-kk~Tlt~---reiqtAvrl~Lpge------LakhAv~eG~kav~k~~sSkyi~kvLv~~IS~ka 81 (148)
|.|+..|..+=.... .-.-.++ .-+|.|..-.|-|- .+-||...|-+ .||..+
T Consensus 7 F~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvk-----------------RIS~~i 69 (121)
T 2ly8_A 7 FARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSK-----------------RISGLI 69 (121)
T ss_dssp HHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSS-----------------CCSSCH
T ss_pred hHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCcc-----------------chhHHH
Confidence 677777765433221 0112222 34788888777763 36888555554 788888
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 82 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 82 m~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..-+...+++.++.|+.+|..++.+.+|+|+|+.||--|.+.
T Consensus 70 y~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 70 YEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 888999999999999999999999999999999999999873
No 25
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.22 E-value=0.00036 Score=53.54 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=50.5
Q ss_pred Cccceee-----eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 68 DTLSVLV-----LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 68 yi~kvLv-----~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.|+|.|. ..||..|-.+|-..+.++...|.+.|.+.|+.+++.+|++|+||.|++
T Consensus 49 rI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 49 RVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 4566661 679999999999999999999999999999999999999999999999
No 26
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.21 E-value=0.00059 Score=46.23 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=45.4
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+|..+-..|-.-+.+-...|+.||.++++..||+|||..||..|.++
T Consensus 22 ~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 22 GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 5678999999999999999999999999999999999999999999874
No 27
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.05 E-value=0.00094 Score=48.57 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=47.1
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..||..+..-+..++.++++.|+.+|...+++.+|+||+..||..|++-
T Consensus 23 ~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 23 TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999874
No 28
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.00 E-value=0.0009 Score=47.88 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=36.3
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
+...+...++.|+.+|...+++++|+||+++||+.|++-+
T Consensus 55 l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 55 VRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4567788899999999999999999999999999999964
No 29
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.97 E-value=0.001 Score=47.57 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=36.2
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
+...+...++.|+.+|...+++++|+||+++||+.|++-+
T Consensus 55 l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 55 TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 4556788899999999999999999999999999999964
No 30
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.94 E-value=0.0017 Score=45.34 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=46.3
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..||+.|...+.-....+...|+.+|...|...+|.||+..||+.|++
T Consensus 26 ~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 26 GKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999998
No 31
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.90 E-value=0.0013 Score=46.41 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=45.7
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..||..|-..+.-....+.+.|+.+|...++.+||+||+++||+.||+
T Consensus 36 ~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~ 83 (97)
T 1n1j_B 36 KMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83 (97)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence 569999999999999999999999999999999999999999999987
No 32
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.78 E-value=0.0015 Score=43.26 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=34.4
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr 41 (148)
+..++.+.++.|+.+|...+.+.||+||+++||+.|++
T Consensus 32 l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 32 LAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 44577888899999999999999999999999999986
No 33
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=96.68 E-value=0.0022 Score=47.01 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=46.2
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..||+.|-.++.-....+...|+++|...|+.+||+||+++||+.||+
T Consensus 58 ~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 58 KMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999996
No 34
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.64 E-value=0.0011 Score=47.10 Aligned_cols=48 Identities=8% Similarity=0.198 Sum_probs=42.9
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..||..|-.++.-....+.+.|+++|.+.++.++|.||+++||+.||+
T Consensus 28 ~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 28 GKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 679999999999999999999999999999999999999999999986
No 35
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.49 E-value=0.0044 Score=41.65 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=47.3
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhC
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 125 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~l 125 (148)
...|..+..-|--|+...-..|+.+|..++.+.+|+|++..||+.|++..+
T Consensus 17 ~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 17 QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 567899999999999999999999999999999999999999999998643
No 36
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.42 E-value=0.0034 Score=42.43 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
-+..-...|+.||.+++++.||+||+..||..|.|+
T Consensus 35 dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 35 DVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 355567788999999999999999999999999874
No 37
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.38 E-value=0.0046 Score=44.26 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=36.6
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
+..++...++.|+.||..++++.+|+||+..||..|.+-+
T Consensus 54 l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 54 VRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4567888999999999999999999999999999999864
No 38
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=96.34 E-value=0.009 Score=56.87 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=79.7
Q ss_pred CCCCChhHHHHHHHHhCCcccccccccccccccc-ccccCC------Ccccee--e--eccchHHHHHHHHHHHHHHHHH
Q psy17766 28 RSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT-KYTSSN------DTLSVL--V--LPINIKAMSIMNSFVNDIFERI 96 (148)
Q Consensus 28 k~Tlt~reiqtAvrl~LpgeLakhAv~eG~kav~-k~~sSk------yi~kvL--v--~~IS~kam~imnsfv~DiferI 96 (148)
....|.-|++..|.-.+|+.+.++|+.++..+.. +...+. .|++.| . ..|+..|..+|-..+.++-..|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~ 141 (1049)
T 3ksy_A 62 AQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADI 141 (1049)
T ss_dssp TCCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHTTCCCSSSCSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhCCCchHHHHHHHHHHhhhcccccCCccccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHH
Confidence 6777899999999999999999999999876543 222221 356666 2 6788999999999999999999
Q ss_pred HHHhchhhhccCCCccChHHHHHHHH
Q psy17766 97 AAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 97 a~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
.+-|++-++.+++..|++|+||.|++
T Consensus 142 l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 142 LKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp HHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceecCcccccccc
Confidence 99999999999999999999999996
No 39
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=96.33 E-value=0.0042 Score=45.16 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=46.7
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+|.+++.-|.-++.+.++.|+.++..++++.+|+||+..||..|+|-
T Consensus 38 ~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 38 VLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999984
No 40
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.30 E-value=0.0047 Score=45.43 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=46.6
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+|.+++.-|.-++.+.++.|+.++..+|+..||+||++.||..++|-
T Consensus 46 ~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 46 MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 4599999999999999999999999999999999999999999999883
No 41
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0048 Score=43.55 Aligned_cols=49 Identities=6% Similarity=0.121 Sum_probs=46.2
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+|..++.-|.-++.+.++.|+.++..+|+..+|+||++.||..++|-
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999999873
No 42
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.22 E-value=0.01 Score=41.21 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=45.3
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+++.|+.-+.--..+..-.+.++|-..|.+.||.||.++|||-|.|+
T Consensus 26 ~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri 74 (82)
T 3nqj_A 26 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 74 (82)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999996
No 43
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=96.19 E-value=0.0095 Score=40.94 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=45.2
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+++.|+.-|.--..+....+.+++-.++.+.||.||.++|||-|.|+
T Consensus 24 ~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 24 LRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 4678999999999999999999999999999999999999999999985
No 44
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.14 E-value=0.005 Score=42.37 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=36.0
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
+...+...++.|+.||..++++.+|+|++..||..|.+-.
T Consensus 36 l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 36 TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4567888999999999999999999999999999998853
No 45
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=95.99 E-value=0.009 Score=45.41 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=46.9
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
+.+|..++.-|.-++.+.++.|+.++..+|+..+|+||++.||..++|-
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999984
No 46
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=95.81 E-value=0.017 Score=42.85 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=47.5
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
..||+.|...|.-...-+...|+.+|...+...+|+||+..||..|+.-+
T Consensus 27 ~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 27 ASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred ceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 67999999999999999999999999999999999999999999999854
No 47
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=95.71 E-value=0.015 Score=42.21 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=36.2
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+..++.+.++.|+.+|..++++.+|+||+..||..|+|-
T Consensus 33 l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 33 VEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 566788899999999999999999999999999999985
No 48
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=95.47 E-value=0.022 Score=40.84 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=44.8
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+++.|+.-|.--..+.+-.+.++|-.+|.+.||.||.++|||-|.|+
T Consensus 51 ~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 51 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 4678999999998888999999999999999999999999999999885
No 49
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=95.41 E-value=0.021 Score=42.02 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus 52 vLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 52 VLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 344455566667778888999999999999999993
No 50
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.30 E-value=0.029 Score=42.24 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=46.2
Q ss_pred eeccchHHHHHHHHHHHHHHHHHHHHhchhh-hccCCCccChHHHHHHHH
Q psy17766 74 VLPINIKAMSIMNSFVNDIFERIAAESSRLA-HYNKRSTITSREIQTAVR 122 (148)
Q Consensus 74 v~~IS~kam~imnsfv~DiferIa~EA~~La-~~~kr~Tlt~reIqtAvr 122 (148)
+..||..|.-++.-...-+...|+.+|...+ +.+||+||+.++|..||+
T Consensus 35 v~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 35 TGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 3779999999999999999999999999999 999999999999999997
No 51
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=95.24 E-value=0.036 Score=38.42 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=33.0
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr 41 (148)
+..........|+.+|...|...+|+||+.+||+.|++
T Consensus 36 l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 36 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 34445567788999999999999999999999999998
No 52
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=95.22 E-value=0.026 Score=41.69 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus 53 vLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 53 VMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 344555566667777888999999999999999993
No 53
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=95.18 E-value=0.033 Score=42.29 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhh
Q psy17766 76 PINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124 (148)
Q Consensus 76 ~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~ 124 (148)
.+++.|+..|.--..+.+-.+.++|-.+|...||.||.++|||.|.|+-
T Consensus 85 Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 85 NWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence 5788999999888899999999999999999999999999999999973
No 54
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.17 E-value=0.027 Score=42.04 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus 55 vLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 55 VLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 344455566666778888999999999999999993
No 55
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.14 E-value=0.051 Score=36.36 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=35.6
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
|.-|....-..|+.+|..++.+.+|+||+..||+.|++..
T Consensus 27 L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 27 LLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 4567778888899999999999999999999999999864
No 56
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=95.04 E-value=0.031 Score=41.60 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus 55 vLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 55 VLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 344455566666777888999999999999999993
No 57
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.01 E-value=0.043 Score=43.08 Aligned_cols=49 Identities=12% Similarity=0.276 Sum_probs=46.8
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..||..|...|.-.+..+...|+.||..+|...+|+||+..||-.|+.-
T Consensus 32 ~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 32 VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999873
No 58
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=94.99 E-value=0.032 Score=43.04 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=44.8
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+++.|+..|---..+.+-.+.++|-.+|...||.||.++|||.|.|+
T Consensus 100 lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 100 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 3578899999998889999999999999999999999999999999996
No 59
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=94.91 E-value=0.034 Score=41.34 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 8 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 8 v~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+-.+...|.+.|.+.++.+++.+|++|+||.|++-
T Consensus 59 LEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 59 LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 34445556666777788899999999999999995
No 60
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=94.86 E-value=0.035 Score=42.39 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 7 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 7 fv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+-.+...|.+.|.+.++.+++.+|++++||.|++-
T Consensus 74 VLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 74 VLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 344455566666777888999999999999999994
No 61
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=94.82 E-value=0.047 Score=41.15 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=46.0
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
..+++.|+.-|.--..+.+..+.+++..++.+.||.||.++|||.|.|+
T Consensus 83 ~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 83 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 5789999999999999999999999999999999999999999999986
No 62
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=94.71 E-value=0.045 Score=37.94 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
+..-.+.++|..++.+.||.||.++|||-|.|+ -||
T Consensus 42 ~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri--rg~ 77 (82)
T 3nqj_A 42 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI--RGL 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH--HC-
T ss_pred HHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH--ccc
Confidence 344455568888999999999999999999997 455
No 63
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.065 Score=39.66 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=35.7
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+...+.+.++.|+.+|..++.+.+|+|+|..||.-|.+.
T Consensus 73 ~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 73 VRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 456788899999999999999999999999999999885
No 64
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=94.38 E-value=0.048 Score=37.39 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
+....+.+++..++.+.||.||.++|||-|.|+ -||
T Consensus 40 aylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri--rg~ 75 (77)
T 2hue_B 40 AYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI--RGE 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH--hCc
Confidence 344456678889999999999999999999996 554
No 65
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=94.26 E-value=0.042 Score=39.82 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=36.3
Q ss_pred hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.+.-|+.+.++.|+.++..++++.+|+||+..||..|+|-
T Consensus 47 aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 47 AISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 3556788899999999999999999999999999999885
No 66
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=94.12 E-value=0.063 Score=37.65 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 9 NDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 9 ~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
--+.+.|+.+|...++.+||+||+.+||+.|++-
T Consensus 51 E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~ 84 (97)
T 1n1j_B 51 QIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhc
Confidence 3445678999999999999999999999999974
No 67
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.051 Score=38.22 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=35.0
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+-.++.+.++.|+.++..+|++.+|+||+..||..++|-
T Consensus 41 L~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 41 LLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 456778888999999999999999999999999999874
No 68
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=93.71 E-value=0.061 Score=39.42 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=36.1
Q ss_pred hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
-+..++.+.++.|+.++..+|++.||+||+..||..++|-
T Consensus 55 aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 55 AISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 3556788999999999999999999999999999999874
No 69
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=93.19 E-value=0.066 Score=39.00 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 11 IFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 11 iferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+...|+.+|...|+.+||+||+++||+.||+-
T Consensus 75 Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 75 FITELTMRAWIHAEDNKRRTLQRSDIAAALSK 106 (119)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence 34678899999999999999999999999973
No 70
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=93.16 E-value=0.1 Score=39.61 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=36.5
Q ss_pred hhHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 3 imnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
-+..++.+.++.|+.++..++++.+|+||+..||..++|-
T Consensus 47 aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 47 AISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3556788999999999999999999999999999999984
No 71
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=93.01 E-value=0.2 Score=34.18 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=43.4
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
..+...+-..+-.+.+|+.+.+++.|++||++.|-.||..+|||....
T Consensus 22 ~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 22 EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 467888888999999999999999999999999999999999997654
No 72
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=92.78 E-value=0.1 Score=37.33 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=26.9
Q ss_pred HHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 11 IFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 11 iferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
..-.+.++|..++.+.||.||.++|||-|.|+
T Consensus 68 yLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 68 YLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 33445567889999999999999999999885
No 73
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=92.74 E-value=0.036 Score=39.07 Aligned_cols=33 Identities=12% Similarity=0.318 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
-+.+.|+.+|.+.++.++|+||+++||+.||+-
T Consensus 44 ~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 44 LFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp HHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 345678899999999999999999999999874
No 74
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=92.09 E-value=0.15 Score=38.55 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 10 Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
+..-.+.++|..++.+.||.||.++|||-|.|+
T Consensus 100 ayLv~LFEdanlcAiHAkRVTIm~kDiqLArri 132 (140)
T 3nqu_A 100 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 132 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHh
Confidence 445556668888999999999999999999997
No 75
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=91.75 E-value=0.16 Score=39.07 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 9 NDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 9 ~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
-+..-.+.++|..+|.+.||.||.++|||-|.|+ -||
T Consensus 115 EayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI--rg~ 151 (156)
T 3r45_A 115 EAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI--RGL 151 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH--ccc
Confidence 3455556668888999999999999999999997 454
No 76
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=91.59 E-value=0.35 Score=35.63 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 5 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 5 nsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
.....-+...|+.+|..+|...+|+||+..||-.|+.-
T Consensus 38 ~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~ 75 (128)
T 2byk_B 38 ARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE 75 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 34445567789999999999999999999999999986
No 77
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=91.17 E-value=0.33 Score=39.57 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=36.0
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHHh
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl~ 43 (148)
+...+.+..+.|+.+|..++.+.+|+|+|+.||.-|++..
T Consensus 187 lr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 187 VRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 4567788999999999999999999999999999999853
No 78
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=90.88 E-value=0.25 Score=37.17 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 9 NDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 9 ~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
-+....+.+++..++.+.||.||.++|||-|.|+
T Consensus 98 EayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 98 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence 3455567778999999999999999999999996
No 79
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=90.63 E-value=0.42 Score=32.56 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHH
Q psy17766 5 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41 (148)
Q Consensus 5 nsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvr 41 (148)
-.+..|+.+.++..|++||++.|..||..+|||....
T Consensus 33 l~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 33 LQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 3455666677788899999999999999999997654
No 80
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=89.70 E-value=0.57 Score=36.67 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=34.1
Q ss_pred hHhHHHHHHHHHHHHHhHHHhhcCCCCCChhHHHHHHHH
Q psy17766 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 4 mnsfv~Diferia~Ea~~L~~~~kk~Tlt~reiqtAvrl 42 (148)
|......+...|+.||..+|...+|+||+..||-.|+.-
T Consensus 42 l~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 42 VVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 455666777889999999999999999999999999884
No 81
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=86.13 E-value=0.65 Score=34.77 Aligned_cols=32 Identities=6% Similarity=0.074 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHH-hhcCCCCCChhHHHHHHHH
Q psy17766 11 IFERIAAESSRLA-HYNKRSTITSREIQTAVRL 42 (148)
Q Consensus 11 iferia~Ea~~L~-~~~kk~Tlt~reiqtAvrl 42 (148)
+...|+.+|...+ +.+||+||+.++|..||+-
T Consensus 53 FI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~ 85 (140)
T 2byk_A 53 FVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK 85 (140)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhc
Confidence 3456899999999 9999999999999999983
No 82
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=77.48 E-value=3.5 Score=27.49 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 49 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLa 49 (148)
...++.||+-.+-......|+..|+..|++-+.||-..
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 46788999999988889999999999999999998543
No 83
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=74.48 E-value=4.7 Score=26.14 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 46 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg 46 (148)
.+.++.||+..+-...+..|+..|+..|++-+-|+
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 46789999999988888999999999999999996
No 84
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=73.57 E-value=4.8 Score=26.08 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.3
Q ss_pred HHHHHHHhchhhhccCCCccChHHHHHHHHhhCch
Q psy17766 93 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 127 (148)
Q Consensus 93 ferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg 127 (148)
++.++.||...+-...+..||..|+..|++-+-|+
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 34688899988888888999999999999999996
No 85
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=73.23 E-value=6.8 Score=34.33 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=72.6
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccc-----------ccccccccccccccc--cCCCcccee-e---
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA-----------KHAVSEGTKAVTKYT--SSNDTLSVL-V--- 74 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLa-----------khAv~eG~kav~k~~--sSkyi~kvL-v--- 74 (148)
.+.+..+|..++...++..|+..|++.|+.-++||--. .-|.-|.-+|+..+. ....++|+- +
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~ 319 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRG 319 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSS
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCC
Confidence 46677888888888888899999999999999998321 123334334443322 233456655 2
Q ss_pred --eccchH---HHHH--HHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 --LPINIK---AMSI--MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 --~~IS~k---am~i--mnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
.|+... .|-. =.++.++|-..++..|..-.-+..-+|=.+.|||.|.++
T Consensus 320 ~~~g~~~p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~ 375 (499)
T 2dhr_A 320 RALGFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATEL 375 (499)
T ss_dssp CTTCSSHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHH
T ss_pred CcCcccccchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHH
Confidence 333321 2211 134566666666666666667778888999999999874
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=72.21 E-value=4.2 Score=27.20 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=31.9
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
++.++.||+-.+-...+..|+..|+..|++-+.|+.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~~ 85 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 85 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Confidence 466889999998888899999999999999999873
No 87
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=71.45 E-value=4.8 Score=26.28 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=30.7
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 48 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeL 48 (148)
.+.++.||+..+-...+..|+..|+..|++-+.+|..
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4678999999999989999999999999999877643
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=69.93 E-value=4.3 Score=27.05 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=28.8
Q ss_pred HHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHH
Q psy17766 93 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 130 (148)
Q Consensus 93 ferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLa 130 (148)
+..++.||+-.+-...+..|+..|+..|++-+.||--.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 35677778777777778899999999999999998544
No 89
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=66.13 E-value=5.3 Score=26.04 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHHHHhchhhhccCCCccChHHHHHHHHhhCchHH
Q psy17766 94 ERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 129 (148)
Q Consensus 94 erIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeL 129 (148)
+.++.||+..+-...+..||..|++.|++-+.+|..
T Consensus 38 ~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 38 AAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 457888888888888899999999999999986643
No 90
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=65.48 E-value=18 Score=24.89 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=40.2
Q ss_pred eccchHHHHHHHHHHHHHHHHHHHHhchhhhcc-CCCccChHHHHHHHHhhC
Q psy17766 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYN-KRSTITSREIQTAVRLLL 125 (148)
Q Consensus 75 ~~IS~kam~imnsfv~DiferIa~EA~~La~~~-kr~Tlt~reIqtAvrl~l 125 (148)
.++|.....+|..+-.-+.-.|.++|....... ....|.|++|+.|.|.+-
T Consensus 32 ~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 32 TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 567777777777777777788888998877665 456999999999998764
No 91
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=64.73 E-value=7.4 Score=24.91 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.9
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 46 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg 46 (148)
.+.++.||+..+-...+..|+..|+..|++-++.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999887654
No 92
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=63.41 E-value=11 Score=35.96 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=55.1
Q ss_pred cccee--e---eccchHHHHHHHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhhhhhh
Q psy17766 69 TLSVL--V---LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 141 (148)
Q Consensus 69 i~kvL--v---~~IS~kam~imnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg~kav 141 (148)
++||+ | +++.-.|...+++++-.++-.++. ....|..|++..|.-.+|+.+.++|+.++-.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1049)
T 3ksy_A 27 LKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHPIDKWAIADAQSAI 94 (1049)
T ss_dssp HHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCchHHHHHHHHHHhh
Confidence 67888 5 999999999999999999888875 457788999999999999999999999976653
No 93
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=62.42 E-value=5.2 Score=26.73 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.6
Q ss_pred HHHHHHHhchhhhccCCCccChHHHHHHHHhhCch
Q psy17766 93 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 127 (148)
Q Consensus 93 ferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg 127 (148)
++.++.||+-.+-...+..|+..|+..|++-+.|+
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 34578888888877778999999999999998886
No 94
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=57.39 E-value=8 Score=24.74 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=28.5
Q ss_pred HHHHHHHhchhhhccCCCccChHHHHHHHHhhCch
Q psy17766 93 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 127 (148)
Q Consensus 93 ferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg 127 (148)
.+.++.||...+-...+..||..|+..|++-++.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 35688888888888888999999999999876653
No 95
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=45.02 E-value=42 Score=26.05 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=40.0
Q ss_pred ccchHHHHHHHHHHHH-------HHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHH
Q psy17766 76 PINIKAMSIMNSFVND-------IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 129 (148)
Q Consensus 76 ~IS~kam~imnsfv~D-------iferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeL 129 (148)
.+|..++..+..+... -...+...|..+|...++.+++..++..|+.++|+..+
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 5677777766555442 24566666777777788899999999999999887654
No 96
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=40.64 E-value=25 Score=26.52 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=24.7
Q ss_pred HHHHHHhchhhhccCCCccChHHHHHHHHhhCch
Q psy17766 94 ERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 127 (148)
Q Consensus 94 erIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg 127 (148)
+.++.+|...+...++..|+..|+..|++.++.|
T Consensus 222 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 222 ANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 4566677777777777788888888888776654
No 97
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.11 E-value=28 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=31.8
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
.+.++.||+-.|-..++..+|..|+..|++-++|+.
T Consensus 358 i~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 358 VKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcc
Confidence 467899999999888999999999999999988853
No 98
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=34.09 E-value=98 Score=21.04 Aligned_cols=45 Identities=9% Similarity=0.160 Sum_probs=31.0
Q ss_pred eccchHHHHH----HHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 75 LPINIKAMSI----MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 75 ~~IS~kam~i----mnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
+.||..|+.. |+-||+.-+.|=+.+|. ......|+..+++.-.-+
T Consensus 31 TkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~----~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 31 TKVSGDALQLMVELLKVFVVEAAVRGVRQAQ----AEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCSSBCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCcccHHHHHHHHHH
Confidence 8899999985 55555555555555544 456778999998874443
No 99
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=33.59 E-value=60 Score=28.29 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=38.2
Q ss_pred HHHHHHHhchhhhccCCCccChHHHHHHHHhhCch-----------HHHHhHHhhhhhhhhcc
Q psy17766 93 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG-----------ELAKHAVSEGTKAVTKY 144 (148)
Q Consensus 93 ferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg-----------eLakhAv~eg~kav~~~ 144 (148)
++.++.+|..++...++..|+..|++.|+.-++|| |-..-|.-|.-+||..+
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~ 302 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAH 302 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHh
Confidence 45677788777777788899999999999998886 22345666655566543
No 100
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.19 E-value=32 Score=29.55 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchH
Q psy17766 88 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 128 (148)
Q Consensus 88 fv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpge 128 (148)
|.--=++.++.||+-.|-..++..+|..|+..|++-++|+.
T Consensus 353 ~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 353 CSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcc
Confidence 33333578889999888888899999999999999888864
No 101
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=32.09 E-value=92 Score=20.91 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=32.1
Q ss_pred eccchHHHHH----HHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHH
Q psy17766 75 LPINIKAMSI----MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122 (148)
Q Consensus 75 ~~IS~kam~i----mnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvr 122 (148)
+.|++.|+.. |+.||+.-+.|=+.+| ...+...|...+++.-.-
T Consensus 27 trI~~dAl~l~aeyl~iFV~EAv~RA~~~a----~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 27 TRVNGDALLLMAELLKVFVREAAARAARQA----QAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCCeecHHHHHHHHH
Confidence 7889999884 6677777777766665 345667899999887443
No 102
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.78 E-value=34 Score=29.84 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=32.1
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
.+.++.||+-.|-..++..||..|+..|++-+.|+.
T Consensus 392 I~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 392 IQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 467889999999889999999999999999988864
No 103
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=31.53 E-value=37 Score=25.74 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHHHHhchhhhccCCCccChHHHHHHHHhhCch
Q psy17766 92 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 127 (148)
Q Consensus 92 iferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg 127 (148)
-.+.++.+|...|...++.+|+..|++.|++-+++.
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 345577888888888888999999999999988764
No 104
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=31.36 E-value=52 Score=25.51 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccc
Q psy17766 14 RIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 49 (148)
Q Consensus 14 ria~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLa 49 (148)
.+...|..++...++.+++..++..|+.++|+..+.
T Consensus 293 ~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 293 TLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 444555556666788899999999999999886653
No 105
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=31.22 E-value=54 Score=25.58 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=27.6
Q ss_pred HHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccc
Q psy17766 14 RIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 48 (148)
Q Consensus 14 ria~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeL 48 (148)
.+..-|..+|...++..+++.|++.|++.+|+..+
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 44555566777888999999999999999887654
No 106
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=30.90 E-value=1.5e+02 Score=23.11 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=42.1
Q ss_pred eccchHHHHHHHHHHH----HHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHHHHhHHhhh
Q psy17766 75 LPINIKAMSIMNSFVN----DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG 137 (148)
Q Consensus 75 ~~IS~kam~imnsfv~----DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeLakhAv~eg 137 (148)
..++..++..+-.+.. .-...+...|..+|..+++.+||..+++.|...+++..-....+.+.
T Consensus 277 ~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~~ 343 (368)
T 3uk6_A 277 VEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEY 343 (368)
T ss_dssp CCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 3466666665544443 12335666677777788999999999999999988766555444443
No 107
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=29.85 E-value=41 Score=25.48 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 46 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg 46 (148)
.+.+..+|...+....+.+|+..|++.|++-+++.
T Consensus 227 i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 227 LKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 45588888888888899999999999999988764
No 108
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.94 E-value=39 Score=29.44 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHhhCchH
Q psy17766 88 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 128 (148)
Q Consensus 88 fv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpge 128 (148)
|.--=++.++.||.-.|-..++..||..|+..|++-+.|+.
T Consensus 387 fSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 387 LSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 33334577888999888888899999999999999888864
No 109
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.66 E-value=39 Score=29.68 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
.+.++.||+..|-..++..+|..|+..|+.-+++|-
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~ 454 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 454 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCc
Confidence 367889999999888999999999999999888863
No 110
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=27.97 E-value=1.4e+02 Score=20.20 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHhhc-CCCCCChhHHHHHHHHhC
Q psy17766 12 FERIAAESSRLAHYN-KRSTITSREIQTAVRLLL 44 (148)
Q Consensus 12 feria~Ea~~L~~~~-kk~Tlt~reiqtAvrl~L 44 (148)
.-.|.++|..+..-. ....|.|++|+.|.|.+-
T Consensus 50 VgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 50 VGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 345666777776654 466999999999998754
No 111
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.69 E-value=22 Score=26.45 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHhchhhhccCCCccChHHHHHHHHhhCchHH
Q psy17766 93 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 129 (148)
Q Consensus 93 ferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeL 129 (148)
...++.+|...+...++.+|+..|+..|++-+.||.-
T Consensus 218 l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 218 IANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HHHHHHHHHTC--------CCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChh
Confidence 3455666666666667778888888888887777643
No 112
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=24.54 E-value=22 Score=26.50 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=17.3
Q ss_pred HHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcc
Q psy17766 13 ERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47 (148)
Q Consensus 13 eria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpge 47 (148)
+.+..+|...+...++.+|+..|+..|++-+.||.
T Consensus 219 ~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 219 ANICNEAALHAAREGHTSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp HHHHHHHHTC--------CCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccCh
Confidence 34555555555556666777777777777766653
No 113
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.50 E-value=70 Score=27.47 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=31.3
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 46 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg 46 (148)
.+.++.||+..|-..++..|+..|+..|++-+.|+
T Consensus 391 i~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 391 LKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence 46788999999988899999999999999988885
No 114
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.83 E-value=45 Score=29.25 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHHHHHhchhhhccCCCccChHHHHHHHHhhCch
Q psy17766 92 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 127 (148)
Q Consensus 92 iferIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpg 127 (148)
=++.++.||...|-..++..+|..|+..|+.-+++|
T Consensus 418 DI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 418 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 356788999988888889999999999999988886
No 115
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=23.36 E-value=58 Score=25.39 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=27.4
Q ss_pred HHHHHhchhhhccCCCccChHHHHHHHHhhCchHH
Q psy17766 95 RIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL 129 (148)
Q Consensus 95 rIa~EA~~La~~~kr~Tlt~reIqtAvrl~lpgeL 129 (148)
.+...|..+|...++..+++.|++.|++.+|+..+
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 34455556677889999999999999999986543
No 116
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=22.17 E-value=96 Score=26.78 Aligned_cols=110 Identities=17% Similarity=0.283 Sum_probs=59.9
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCcccccc-----------cccccccccccc--ccCCCccceee--ec
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKH-----------AVSEGTKAVTKY--TSSNDTLSVLV--LP 76 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLakh-----------Av~eG~kav~k~--~sSkyi~kvLv--~~ 76 (148)
.+.+..+|..++...++..|+..|+..|+.-++||--.+- |.-|.-+|+..+ .....+.|+-+ .|
T Consensus 225 L~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg 304 (476)
T 2ce7_A 225 LENLVNEAALLAAREGRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRG 304 (476)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC---
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCc
Confidence 3567788888888888899999999999999998732221 112212222111 11223334331 11
Q ss_pred cchHHHHH-------------HHHHHHHHHHHHHHHhchhhhccCCCccChHHHHHHHHh
Q psy17766 77 INIKAMSI-------------MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 123 (148)
Q Consensus 77 IS~kam~i-------------mnsfv~DiferIa~EA~~La~~~kr~Tlt~reIqtAvrl 123 (148)
. .|.++ -..+.+.|--.++..|+.-.-+..-+|=.+.|||.|.++
T Consensus 305 ~--~alg~~~~~p~~~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~ 362 (476)
T 2ce7_A 305 Y--KALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEI 362 (476)
T ss_dssp ----------------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHH
T ss_pred c--cccceEEEcCcccccccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHH
Confidence 0 01110 122344444445555665566677888889999999875
No 117
>1d6g_A CCK-A-receptor, cholecystokinin type A receptor; alpha-helix, beta-sheet, complex GPCR-ligand, hormone/growth factor complex; NMR {Synthetic} SCOP: g.33.1.1
Probab=21.95 E-value=24 Score=21.91 Aligned_cols=13 Identities=46% Similarity=0.496 Sum_probs=11.5
Q ss_pred ChhHHHHHHHHhC
Q psy17766 32 TSREIQTAVRLLL 44 (148)
Q Consensus 32 t~reiqtAvrl~L 44 (148)
.++|.|-|||++|
T Consensus 35 ~~kE~~~aVrIlL 47 (47)
T 1d6g_A 35 PSKEWQPAQVILL 47 (47)
T ss_dssp SCSSHHHHHHSCC
T ss_pred CchhhChhheeeC
Confidence 6799999999876
No 118
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=21.44 E-value=75 Score=24.92 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=28.4
Q ss_pred HHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCccccc
Q psy17766 14 RIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK 50 (148)
Q Consensus 14 ria~Ea~~L~~~~kk~Tlt~reiqtAvrl~LpgeLak 50 (148)
.+...|..++...++.+|+..+++.|...+++..-..
T Consensus 301 ~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~ 337 (368)
T 3uk6_A 301 QLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRST 337 (368)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHH
Confidence 4555666677778999999999999999877654443
No 119
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.20 E-value=78 Score=27.20 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=30.7
Q ss_pred HHHHHHHHhHHHhhcCCCCCChhHHHHHHHHhCCc
Q psy17766 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG 46 (148)
Q Consensus 12 feria~Ea~~L~~~~kk~Tlt~reiqtAvrl~Lpg 46 (148)
...++.||+-.+-..++..|+..|+..|++-+.|.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 46788999999988899999999999999988774
Done!