RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17766
(148 letters)
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 104 bits (260), Expect = 6e-30
Identities = 69/74 (93%), Positives = 71/74 (95%)
Query: 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 134
I+ KAMSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV
Sbjct: 50 TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 109
Query: 135 SEGTKAVTKYTSSK 148
SEGTKAVTKYTSSK
Sbjct: 110 SEGTKAVTKYTSSK 123
Score = 98.6 bits (245), Expect = 1e-27
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSIMNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 57 MSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 116
Query: 61 TKYTSS 66
TKYTSS
Sbjct: 117 TKYTSS 122
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 99.1 bits (246), Expect = 7e-28
Identities = 67/74 (90%), Positives = 69/74 (93%)
Query: 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 134
I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV
Sbjct: 53 TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 112
Query: 135 SEGTKAVTKYTSSK 148
SEGTKAVTKYTSSK
Sbjct: 113 SEGTKAVTKYTSSK 126
Score = 93.3 bits (231), Expect = 1e-25
Identities = 63/66 (95%), Positives = 64/66 (96%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 60 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 119
Query: 61 TKYTSS 66
TKYTSS
Sbjct: 120 TKYTSS 125
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone
complex, intrinsically unfolded protein,
chaperone/structural protein complex; NMR {Saccharomyces
cerevisiae} SCOP: a.22.1.1 a.22.1.1
Length = 192
Score = 64.8 bits (156), Expect = 5e-14
Identities = 66/144 (45%), Positives = 84/144 (58%), Gaps = 22/144 (15%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAVSEGT+AV
Sbjct: 27 MSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAV 86
Query: 61 TKYTSSNDTLSVLVLP----------------------INIKAMSIMNSFVNDIFERIAA 98
TKY+SS S + KA + + + + +
Sbjct: 87 TKYSSSTQAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLE 146
Query: 99 ESSRLAHYNKRSTITSREIQTAVR 122
+ A K IT R +Q A+R
Sbjct: 147 LAGNAAKDLKVKRITPRHLQLAIR 170
Score = 64.4 bits (155), Expect = 1e-13
Identities = 55/71 (77%), Positives = 66/71 (92%)
Query: 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 134
I+ K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REIQTAVRL+LPGELAKHAV
Sbjct: 20 TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAV 79
Query: 135 SEGTKAVTKYT 145
SEGT+AVTKY+
Sbjct: 80 SEGTRAVTKYS 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 3e-07
Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 36/156 (23%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYN--KRSTITSREIQTAVRLLLPGELAKH----AV- 53
+SI+ + D H N K +TI I++++ +L P E K +V
Sbjct: 330 LSIIAESIRDGLATW----DNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVF 381
Query: 54 SEGTKAVTKYTSSNDTLSVL-VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTI 112
T LS++ I M ++N S + K STI
Sbjct: 382 PPSAHIPTI------LLSLIWFDVIKSDVMVVVNKLHK---------YSLVEKQPKESTI 426
Query: 113 TSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 148
+ I +++ L E A H V Y K
Sbjct: 427 SIPSIYLELKVKLENEYALHR-----SIVDHYNIPK 457
Score = 34.4 bits (78), Expect = 0.010
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 18/79 (22%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M ++N S + K STI+ I +++ L E A H V
Sbjct: 405 MVVVNKLHK---------YSLVEKQPKESTISIPSIYLELKVKLENEYALHR-----SIV 450
Query: 61 TKY----TSSNDTLSVLVL 75
Y T +D L L
Sbjct: 451 DHYNIPKTFDSDDLIPPYL 469
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 3e-05
Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 41/141 (29%)
Query: 11 IFERIAAE-----SSRLA-H----YNKRSTITSR----EIQTAVRLL-LPGELAKHAVSE 55
FE + ++ + A H Y + + S I++ V ++ G + AV
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEY---AALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 56 GTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSF----VNDIFERIAAESSRL---AHYNK 108
+ Y ++ IN ++ SF + + ER+ + L +YN
Sbjct: 1800 DELGRSNYG---------MIAINPGRVAA--SFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 109 RS--TITS---REIQTAVRLL 124
+ + + R + T +L
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVL 1869
Score = 40.0 bits (93), Expect = 1e-04
Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 55/187 (29%)
Query: 1 MSIMNSF--VNDIFERIAAESSRLAHY----------N-KRSTI-----TSREIQTAVRL 42
M + + D++ R A++ Y N TI + I+
Sbjct: 1633 MDLYKTSKAAQDVWNR--ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 43 LL------PGELAKHAVSEGTKAVTKYTSSNDTLSVLVLPIN----IKAMSIMNSFVNDI 92
++ + E + T YT ++ +L + M
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-GLLSATQFTQPALTLMEKA------A 1743
Query: 93 FERIAAE-----SSRLA-H----YNKRSTITSR----EIQTAVRLL-LPGELAKHAVSEG 137
FE + ++ + A H Y + + S I++ V ++ G + AV
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEY---AALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 138 TKAVTKY 144
+ Y
Sbjct: 1801 ELGRSNY 1807
>3o5t_A Dinitrogenase reductase activacting glicohydrolas; ADP binding,
hydrolase-transcription complex; HET: ADP; 2.09A
{Azospirillum brasilense} PDB: 3g9d_A*
Length = 297
Score = 31.6 bits (72), Expect = 0.074
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 63
FER E + + H N S + + VR L+ G + E K + K+
Sbjct: 144 AAFERWTVEQAHITHCNAMSDAATLTLGHMVRRLVLGGDVRDVRDESNKLIAKH 197
Score = 31.6 bits (72), Expect = 0.074
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 91 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 144
FER E + + H N S + + VR L+ G + E K + K+
Sbjct: 144 AAFERWTVEQAHITHCNAMSDAATLTLGHMVRRLVLGGDVRDVRDESNKLIAKH 197
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus
fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A
1bfm_A
Length = 68
Score = 28.8 bits (65), Expect = 0.18
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 81 AMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124
A + + ++ E IA+E+ +LA + R TI + +I+ A ++
Sbjct: 24 ARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67
Score = 28.0 bits (63), Expect = 0.34
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43
+ + ++ E IA+E+ +LA + R TI + +I+ A ++
Sbjct: 28 LAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
{Pyrococcus horikoshii} SCOP: a.22.1.2
Length = 70
Score = 28.1 bits (63), Expect = 0.33
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 81 AMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122
A ++ ++ + IA ++ A + R T+ +I+ A++
Sbjct: 28 AAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69
Score = 27.3 bits (61), Expect = 0.53
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41
+ ++ + IA ++ A + R T+ +I+ A++
Sbjct: 32 LAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A
3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A*
1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Length = 136
Score = 29.3 bits (64), Expect = 0.34
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 130
A+ + + +++ A + KR TI ++IQ A R+ GE A
Sbjct: 85 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR--GERA 136
Score = 27.3 bits (59), Expect = 1.6
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA 49
+ + + +++ A + KR TI ++IQ A R+ GE A
Sbjct: 90 VMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR--GERA 136
>2woe_A ADP-ribosyl-[dinitrogen reductase] glycohydrolase; dimanganese,
nitrogen fixation, ADP-ribosylglycohydrolase,
mono-ADP-ribosylhydrolase; HET: AR6 TLA; 1.90A
{Rhodospirillum rubrum} PDB: 2woc_A 2wod_A*
Length = 299
Score = 29.2 bits (66), Expect = 0.44
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 63
E +R+ H + S + V L+ G K E + V ++
Sbjct: 151 LEPWVLAQARITHNHPLSDAACLTLGRMVHHLIGGRGMKACREEANRLVHQH 202
Score = 29.2 bits (66), Expect = 0.44
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 93 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 144
E +R+ H + S + V L+ G K E + V ++
Sbjct: 151 LEPWVLAQARITHNHPLSDAACLTLGRMVHHLIGGRGMKACREEANRLVHQH 202
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.85
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 27 KRSTITSREIQTAVRLLLPGE---LAKHAVSE 55
K++ +++Q +++L LA A E
Sbjct: 19 KQAL---KKLQASLKLYADDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 0.85
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 108 KRSTITSREIQTAVRLLLPGE---LAKHAVSE 136
K++ +++Q +++L LA A E
Sbjct: 19 KQAL---KKLQASLKLYADDSAPALAIKATME 47
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 28.1 bits (63), Expect = 1.1
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 79 IKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGT 138
+K + F + E I E+ + A T+ R++ VR AV +G
Sbjct: 306 VKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR-----AAGDIAVKKGK 360
Query: 139 KAVTK 143
K V +
Sbjct: 361 KYVER 365
Score = 27.7 bits (62), Expect = 1.6
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 62
+ F + E I E+ + A T+ R++ VR AV +G K V +
Sbjct: 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR-----AAGDIAVKKGKKYVER 365
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA
binding protein; HET: CIT; 2.20A {Gallus gallus} PDB:
3b0d_T* 3vh5_T 3vh6_T
Length = 111
Score = 27.3 bits (60), Expect = 1.3
Identities = 8/49 (16%), Positives = 22/49 (44%)
Query: 74 VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122
P+ A I+ F++I+++ + + R T+ +++ +R
Sbjct: 22 KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMR 70
>1n6z_A Hypothetical 12.3 kDa protein in ZDS2-URA5 intergenic region;
structural proteomics, structural genomics, OCSP, NESG;
NMR {Saccharomyces cerevisiae} SCOP: d.263.1.1
Length = 105
Score = 27.1 bits (59), Expect = 1.4
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 42 LLLPGELAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIA 97
L+L + K + K ++ + L+LP N+ + +N++ + I
Sbjct: 10 LVLLEDDTKINKEDEKFLKGKPGKMHEFVDELILPFNVDELDELNTWFDKFDAEIC 65
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_B
Length = 128
Score = 26.9 bits (59), Expect = 1.9
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 96 IAAESSRLAHYNKRSTITSREIQTAVRLL--------LPGELAKHAVSEGTKAVTKYTSS 147
+ + S+ LAH TIT+++I + L L +L + K +K +
Sbjct: 48 VTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYRKVVKEKKESKASKK 107
Query: 148 K 148
Sbjct: 108 D 108
Score = 26.5 bits (58), Expect = 2.4
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 15 IAAESSRLAHYNKRSTITSREIQTAVRLL--------LPGELAKHAVSEGTKAVTK 62
+ + S+ LAH TIT+++I + L L +L + K +K
Sbjct: 48 VTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYRKVVKEKKESK 103
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 27.3 bits (59), Expect = 2.2
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 81 AMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122
+ + + E + +S + KR T+TS ++ A++
Sbjct: 183 IYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 224
Score = 26.9 bits (58), Expect = 2.5
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41
+ + + E + +S + KR T+TS ++ A++
Sbjct: 184 YEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 224
>2foz_A ADP-ribosylhydrolase like 2; all alpha-helical, metal binding;
1.60A {Homo sapiens} PDB: 2fp0_A 2g4k_A 2qty_A
Length = 347
Score = 27.0 bits (60), Expect = 2.4
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 62
++ A S++L H + + AV L L GE + + +
Sbjct: 152 QDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLKQLLGHME 204
Score = 27.0 bits (60), Expect = 2.4
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 91 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 143
++ A S++L H + + AV L L GE + + +
Sbjct: 152 QDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLKQLLGHME 204
>3hfw_A Protein ADP-ribosylarginine hydrolase; all alpha-helical,
magnesium; HET: ADP; 1.92A {Homo sapiens}
Length = 357
Score = 27.0 bits (59), Expect = 2.6
Identities = 5/54 (9%), Positives = 17/54 (31%)
Query: 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 63
D +++ ES R+ H++ + + + + + +
Sbjct: 149 DTLIQVSIESGRMTHHHPTGYLGALASALFTAYAVNSRPPLQWGKGLMELLPEA 202
Score = 27.0 bits (59), Expect = 2.6
Identities = 5/54 (9%), Positives = 17/54 (31%)
Query: 91 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 144
D +++ ES R+ H++ + + + + + +
Sbjct: 149 DTLIQVSIESGRMTHHHPTGYLGALASALFTAYAVNSRPPLQWGKGLMELLPEA 202
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519
protein structure initiative, NEW YORK SGX research
center structural genomics; 2.40A {Bacillus subtilis}
SCOP: a.195.1.1
Length = 189
Score = 26.4 bits (58), Expect = 3.6
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 5 NSFVNDIFERIAAE-SSRLAHYNKRSTITSREIQTAVRLLLPGELAKH 51
++F++DI +AA +SR+AH ++ +E + G H
Sbjct: 140 HTFLDDIVAALAAAAASRIAHTHQDLQDEEKEQDEKPVVSEGGSHHHH 187
Score = 26.4 bits (58), Expect = 3.6
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 86 NSFVNDIFERIAAE-SSRLAHYNKRSTITSREIQTAVRLLLPGELAKH 132
++F++DI +AA +SR+AH ++ +E + G H
Sbjct: 140 HTFLDDIVAALAAAAASRIAHTHQDLQDEEKEQDEKPVVSEGGSHHHH 187
>1y9i_A Low temperature requirement C protein; structural genomics, protein
structure initiative, PSI; 1.80A {Listeria
monocytogenes} SCOP: a.195.1.1
Length = 178
Score = 25.5 bits (56), Expect = 5.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 56 GTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAE-SSRLAH 105
G+ T Y + ++ +N +++F++DI IAA +SRLAH
Sbjct: 110 GSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAH 160
>1t5j_A Hypothetical protein MJ1187; putative hydrolase, structural
genomics, PSI, protein structure initiative; 2.70A
{Methanocaldococcus jannaschii} SCOP: a.209.1.1
Length = 313
Score = 25.7 bits (57), Expect = 6.1
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 10 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 63
+ ++S++ H NK + + I V L + E +
Sbjct: 142 KKLKEEVIKASKITHNNKTAIAGALAIAFFVSSALKDRKDFSLLDECYNYIKDI 195
Score = 25.7 bits (57), Expect = 6.1
Identities = 8/54 (14%), Positives = 17/54 (31%)
Query: 91 DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 144
+ ++S++ H NK + + I V L + E +
Sbjct: 142 KKLKEEVIKASKITHNNKTAIAGALAIAFFVSSALKDRKDFSLLDECYNYIKDI 195
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone
chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl
y-1140}
Length = 103
Score = 25.0 bits (54), Expect = 6.4
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 74 VLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122
V I+ + + + E + ++ + KR T+TS ++ A++
Sbjct: 44 VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo
sapiens} SCOP: a.22.1.3
Length = 93
Score = 24.4 bits (53), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 15 IAAESSRLAHYNKRSTITSREIQTAVRLL 43
I +E+S H KR TI +I A+ L
Sbjct: 47 ITSEASERCHQEKRKTINGEDILFAMSTL 75
Score = 24.4 bits (53), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 96 IAAESSRLAHYNKRSTITSREIQTAVRLL 124
I +E+S H KR TI +I A+ L
Sbjct: 47 ITSEASERCHQEKRKTINGEDILFAMSTL 75
>2yzv_A ADP-ribosylglycohydrolase; all alpha protein, structural genomics,
NPPSFA, N project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 2cwc_A
2yzw_A
Length = 303
Score = 25.3 bits (56), Expect = 8.0
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 12 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 47
+A ++R H + + + + +R L G
Sbjct: 147 LLSLARRAARTTHGAREALEATEVLAWLLREALRGA 182
Score = 25.3 bits (56), Expect = 8.0
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 93 FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE 128
+A ++R H + + + + +R L G
Sbjct: 147 LLSLARRAARTTHGAREALEATEVLAWLLREALRGA 182
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.125 0.321
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,983,577
Number of extensions: 103251
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 55
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)