RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17766
(148 letters)
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 121 bits (304), Expect = 2e-37
Identities = 66/71 (92%), Positives = 68/71 (95%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 136
I+ KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE
Sbjct: 22 ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 81
Query: 137 GTKAVTKYTSS 147
GTKAVTKYTSS
Sbjct: 82 GTKAVTKYTSS 92
Score = 117 bits (295), Expect = 5e-36
Identities = 63/66 (95%), Positives = 64/66 (96%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
M IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV
Sbjct: 27 MGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 86
Query: 61 TKYTSS 66
TKYTSS
Sbjct: 87 TKYTSS 92
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 80.2 bits (198), Expect = 1e-20
Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 6/131 (4%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
+ FV + E +A + + + + T+ ++ +L+ + + +A
Sbjct: 25 KDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGRAT 84
Query: 61 TKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTA 120
+ + + A+ + N + E + +++ A + R T+ +++ A
Sbjct: 85 VRRILKRAG----IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKA 140
Query: 121 VRLLLP--GEL 129
+ +P GEL
Sbjct: 141 ITYSMPKGGEL 151
Score = 60.2 bits (146), Expect = 5e-13
Identities = 8/64 (12%), Positives = 24/64 (37%)
Query: 80 KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 139
A + FV + E +A + + + + T+ ++ +L+ + + +
Sbjct: 23 DAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGR 82
Query: 140 AVTK 143
A +
Sbjct: 83 ATVR 86
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 61.0 bits (148), Expect = 4e-13
Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 29/137 (21%)
Query: 1 MSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV 60
+ + + + + R ++ +++ V+ P + K A+++ A+
Sbjct: 40 LQYVEELILQLLNMLCQAQPR----------SASDVEERVQKSFPHPIDKWAIADAQSAI 89
Query: 61 TKYTSSNDTLSVLVLP---------------INIKAMSIMNSFVNDIFERIAAESSRLAH 105
K N L LP I+ + + + + I I +
Sbjct: 90 EKRKRRNP----LSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVR 145
Query: 106 YNKRSTITSREIQTAVR 122
+ IT ++I+ A+
Sbjct: 146 NIRHYEITKQDIKVAMC 162
Score = 57.1 bits (138), Expect = 1e-11
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 75 LPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV 134
L N A+ + + + + R ++ +++ V+ P + K A+
Sbjct: 33 LESNDDALQYVEELILQLLNMLCQAQPR----------SASDVEERVQKSFPHPIDKWAI 82
Query: 135 SEGTKAVTKYTS 146
++ A+ K
Sbjct: 83 ADAQSAIEKRKR 94
>d1n6za_ d.263.1.1 (A:) Hypothetical protein Yml108w {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 105
Score = 28.0 bits (62), Expect = 0.20
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 42 LLLPGELAKHAVSEGTKAVTKYTSSNDTLSVLVLPINIKAMSIMNSFVNDIFERIA 97
L+L + K + K ++ + L+LP N+ + +N++ + I
Sbjct: 10 LVLLEDDTKINKEDEKFLKGKPGKMHEFVDELILPFNVDELDELNTWFDKFDAEIC 65
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 26.6 bits (59), Expect = 0.34
Identities = 4/45 (8%), Positives = 18/45 (40%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 121
+ I++ + E + ++ ++ T+T+ ++ +
Sbjct: 21 VAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI 65
Score = 25.1 bits (55), Expect = 1.2
Identities = 4/38 (10%), Positives = 17/38 (44%)
Query: 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV 40
I++ + E + ++ ++ T+T+ ++ +
Sbjct: 28 IISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI 65
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 26.6 bits (59), Expect = 0.42
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 71 SVLVLPINIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124
+ ++ A + + ++ E IA+E+ +LA + R TI + +I+ A ++
Sbjct: 15 NAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 68
Score = 24.7 bits (54), Expect = 1.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 3 IMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 43
+ + ++ E IA+E+ +LA + R TI + +I+ A ++
Sbjct: 28 ALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 68
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 300
Score = 26.8 bits (58), Expect = 1.1
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 65 SSNDTLSVLVLPINIKAMSIMNSFVNDIFERIAAE--------SSRLAHYNKRSTITSRE 116
SN L+ P + +F+N + +S L+ + ++ R+
Sbjct: 7 GSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRK 66
Query: 117 IQTAVRL 123
+ VR+
Sbjct: 67 VFHLVRI 73
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 25.9 bits (57), Expect = 1.1
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122
I + A M + + + I + A NK+ +T R I AV
Sbjct: 30 IGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 75
Score = 24.0 bits (52), Expect = 4.6
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 4 MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41
M + + + I + A NK+ +T R I AV
Sbjct: 38 MAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 75
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 24.7 bits (54), Expect = 2.1
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 81 AMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122
+ E + ++ + KR T+T+ ++ A++
Sbjct: 31 IYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 72
Score = 24.3 bits (53), Expect = 2.7
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 8 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 41
+ E + ++ + KR T+T+ ++ A++
Sbjct: 39 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 72
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 23.6 bits (51), Expect = 4.1
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 81 AMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122
A ++ ++ + IA ++ A + R T+ +I+ A++
Sbjct: 24 AAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65
Score = 22.8 bits (49), Expect = 8.7
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 12 FERIAAESSRLAHYNKRSTITSREIQTAVR 41
IA ++ A + R T+ +I+ A++
Sbjct: 36 AIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 23.6 bits (51), Expect = 6.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR 122
I A + V++ I +E+S H KR TI +I A+
Sbjct: 22 IAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 67
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 23.3 bits (50), Expect = 7.3
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 77 INIKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL 124
++ +A + + + + + S+ LAH TIT+++I + L
Sbjct: 19 VSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 66
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit
gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 23.3 bits (50), Expect = 7.5
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 15 IAAESSRLAHYNKRSTITSREIQTAVR 41
+ + NKR T+ +I A+
Sbjct: 38 LTLRAWIHTEDNKRRTLQRNDIAMAIT 64
Score = 23.3 bits (50), Expect = 7.5
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 96 IAAESSRLAHYNKRSTITSREIQTAVR 122
+ + NKR T+ +I A+
Sbjct: 38 LTLRAWIHTEDNKRRTLQRNDIAMAIT 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.125 0.321
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,727
Number of extensions: 16381
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 29
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.0 bits)