BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17767
(64 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 369 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 414
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 403
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 211 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 256
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 237 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 282
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 244 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 289
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 208 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 253
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90
With The Clathrin Adaptor Ap-2
Length = 299
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 222 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 267
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%)
Query: 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSH 46
MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +
Sbjct: 308 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRY 353
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 3 GMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSH 46
G KE + A L + + K +PPIS+ FE+P F SG +V +
Sbjct: 350 GGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRY 394
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 3 GMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSH 46
G KE + A L + + K +PPIS+ FE+P F SG +V +
Sbjct: 193 GGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRY 237
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 3 GMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSH 46
G KE A L + + K +PPIS+ FE+P F SG +V +
Sbjct: 193 GGKEYLXRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRY 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,397,189
Number of Sequences: 62578
Number of extensions: 32123
Number of successful extensions: 39
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 11
length of query: 64
length of database: 14,973,337
effective HSP length: 35
effective length of query: 29
effective length of database: 12,783,107
effective search space: 370710103
effective search space used: 370710103
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)