Query psy17767
Match_columns 64
No_of_seqs 110 out of 325
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:19:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4en2_M AP-1 complex subunit MU 99.6 2.9E-16 9.9E-21 108.3 5.5 55 1-55 191-246 (266)
2 3ml6_A Chimeric complex betwee 99.6 1E-15 3.6E-20 110.3 7.4 53 1-53 308-360 (385)
3 3l81_A AP-4 complex subunit MU 99.5 9.5E-15 3.2E-19 102.4 6.6 54 1-54 216-279 (301)
4 1i31_A Clathrin coat assembly 99.4 1.8E-13 6.3E-18 95.8 7.0 52 1-52 237-288 (314)
5 2vgl_M AP-2 complex subunit MU 99.4 9.9E-13 3.4E-17 94.8 6.8 52 1-52 358-409 (435)
6 1w63_M Adaptor-related protein 99.3 6.4E-13 2.2E-17 95.5 4.5 56 1-56 348-404 (423)
7 2qcp_X Cation efflux system pr 66.5 5.1 0.00017 22.6 2.7 24 20-43 30-55 (80)
8 2l55_A SILB,silver efflux prot 62.2 7.9 0.00027 21.9 3.0 25 19-43 23-49 (82)
9 2vb2_X Copper protein, cation 61.6 7 0.00024 22.4 2.7 23 21-43 39-63 (88)
10 3g9h_A Suppressor of yeast pro 51.6 58 0.002 23.1 6.6 41 7-50 251-301 (328)
No 1
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=99.63 E-value=2.9e-16 Score=108.33 Aligned_cols=55 Identities=35% Similarity=0.488 Sum_probs=41.9
Q ss_pred CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEee-cccccceEeEEEEeeeccc
Q psy17767 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSHLSEILILLL 55 (64)
Q Consensus 1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP-~t~SGLqVryLkV~e~~~~ 55 (64)
|+|++|++|+|+++|.+......|.+|||+|+|+|| ||+|||+||||+|.|++.|
T Consensus 191 ~~g~~e~~l~~~~~l~s~~~~~~~~~~pI~v~F~ip~~t~SGl~V~~L~v~e~~~y 246 (266)
T 4en2_M 191 FPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGY 246 (266)
T ss_dssp EESSCEEEEEEEEEC----------CCCEEEEEEEESEESSCCCEEEEEEECSSCC
T ss_pred ECCCcceEEEEEEEeCCCCCCCcccCCcEEEEEEeCCceeCCcEEEEEEeeccCCC
Confidence 468999999999999875455678999999999999 9999999999999997644
No 2
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=99.61 E-value=1e-15 Score=110.30 Aligned_cols=53 Identities=72% Similarity=1.051 Sum_probs=48.2
Q ss_pred CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEeecccccceEeEEEEeeec
Q psy17767 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILIL 53 (64)
Q Consensus 1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP~t~SGLqVryLkV~e~~ 53 (64)
|+|++|++|+|+|+|.+....+.|.+|||+|+|+||||+|||+||||||.|+.
T Consensus 308 ~~g~~e~~l~~~~~l~~~~~~~~~~~~PI~v~F~Ip~t~SGl~Vr~L~v~e~~ 360 (385)
T 3ml6_A 308 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPK 360 (385)
T ss_dssp ECSSEEEEEEEEEEECCCSSCCSCCCCCEEEEEEESSCTTCCCEEEEEEECSS
T ss_pred ECCCcceEEEEEEEECCCCCCccccCCCEEEEEEEeccccCCEEEEEEEeccc
Confidence 47999999999999987555677999999999999999999999999999984
No 3
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=99.54 E-value=9.5e-15 Score=102.43 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=43.3
Q ss_pred CCCCcEEEEEEEEEecccccc---------ccCCCCCeEEEEEee-cccccceEeEEEEeeecc
Q psy17767 1 MAGMKETQLSAEIELLETDTK---------KKWTRPPISMNFEVP-FAPSGFKVSHLSEILILL 54 (64)
Q Consensus 1 ~~G~~E~~L~a~v~L~s~~~~---------~~~~~pPI~l~FeIP-~t~SGLqVryLkV~e~~~ 54 (64)
|+|++++.++++++|.+..+. ..|.+|||+|+|+|| ||+|||+||||+|.|+..
T Consensus 216 ~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~~ 279 (301)
T 3l81_A 216 VQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPS 279 (301)
T ss_dssp EETTCEEEEEEEEECCCCCC------------CCCCCEEEEEEEETCCSSCCCEEEEEEEC---
T ss_pred ECCCcEEeEEEEEEecCCccccccccccccccccCCCEEEEEEeCCccccCcEEEEEEEecccc
Confidence 468889999999999763332 378999999999999 999999999999999863
No 4
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=99.44 E-value=1.8e-13 Score=95.78 Aligned_cols=52 Identities=73% Similarity=1.085 Sum_probs=46.9
Q ss_pred CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEeecccccceEeEEEEeee
Q psy17767 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILI 52 (64)
Q Consensus 1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP~t~SGLqVryLkV~e~ 52 (64)
|+|++|+.|+|+++|.+......|..+||+|+|+|||++|||+||||+|.|+
T Consensus 237 i~g~~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~t~Sgl~V~~l~v~e~ 288 (314)
T 1i31_A 237 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP 288 (314)
T ss_dssp EESSEEEEEEEEEEECCCCSSSCCCCCCEEEEEEESSCTTCCCEEEEEEECS
T ss_pred CCCCCcEEEEEEEEecCCCcCCccCCCcEEEEEEEeecccCcEEEEEEEecc
Confidence 4688999999999997744466789999999999999999999999999997
No 5
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.37 E-value=9.9e-13 Score=94.81 Aligned_cols=52 Identities=73% Similarity=1.085 Sum_probs=46.9
Q ss_pred CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEeecccccceEeEEEEeee
Q psy17767 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLSEILI 52 (64)
Q Consensus 1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP~t~SGLqVryLkV~e~ 52 (64)
++|++|++|+|++++.+....+.|..+||+|+|+|||++|||+||||+|.|+
T Consensus 358 ~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~t~Sgl~V~~l~v~~~ 409 (435)
T 2vgl_M 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP 409 (435)
T ss_dssp EETTCEEEEEEEEECCCCSCSCCCCCCCEEEEEEESSCTTCCCEEEEEEECS
T ss_pred CCCCCCEEEEEEEEecCCCcCcccCCCcEEEEEEEEecccccEEEEEEEecc
Confidence 3688999999999997754467789999999999999999999999999997
No 6
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.34 E-value=6.4e-13 Score=95.53 Aligned_cols=56 Identities=34% Similarity=0.481 Sum_probs=41.6
Q ss_pred CCCCcEEEEEEEEEeccccccccCCCCCeEEEEEee-cccccceEeEEEEeeecccC
Q psy17767 1 MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVP-FAPSGFKVSHLSEILILLLS 56 (64)
Q Consensus 1 ~~G~~E~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP-~t~SGLqVryLkV~e~~~~~ 56 (64)
++|++|++|+|++++.+......|..+||+|+|+|| |++|||+||||+|.|++.|.
T Consensus 348 i~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t~Sgl~V~~l~v~~~~~y~ 404 (423)
T 1w63_M 348 FPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQ 404 (423)
T ss_dssp EETTCEEEEEEEEEC----------CCCEEEEBCCSSCCTTCCCEEEEEEECSSCCC
T ss_pred CCCCCcEEEEEEEEccCCCcccccCCCcEEEEEEECCEeCCCCEEEEEEeEccCCCC
Confidence 368899999999999764334678899999999999 99999999999999965443
No 7
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=66.49 E-value=5.1 Score=22.59 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=18.3
Q ss_pred ccccCCCCCeEEEEEee--cccccce
Q psy17767 20 TKKKWTRPPISMNFEVP--FAPSGFK 43 (64)
Q Consensus 20 ~~~~~~~pPI~l~FeIP--~t~SGLq 43 (64)
....|..|+..|+|.++ -.++||+
T Consensus 30 pI~~l~wpaMTM~F~v~~~~~l~~lk 55 (80)
T 2qcp_X 30 PIAAVNWPEMTMRFTITPQTKMSEIK 55 (80)
T ss_dssp CBGGGTBCSEEEEEECCTTCEECCCC
T ss_pred CcccCCCCceEEEEEccChhhhhcCC
Confidence 34568889999999997 6666654
No 8
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=62.16 E-value=7.9 Score=21.93 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=18.5
Q ss_pred cccccCCCCCeEEEEEee--cccccce
Q psy17767 19 DTKKKWTRPPISMNFEVP--FAPSGFK 43 (64)
Q Consensus 19 ~~~~~~~~pPI~l~FeIP--~t~SGLq 43 (64)
..-..|..|+..|+|.+. --+++|+
T Consensus 23 ~pI~~l~wPaMTM~F~v~~~~~l~~lk 49 (82)
T 2l55_A 23 EAIPSAQWGAMTMEFAAPPAGLPQGLK 49 (82)
T ss_dssp CCCTTTTCCCEEEEEECCTTCCCSSCS
T ss_pred CCccccCCCceEEEEEcCChhHhhcCC
Confidence 345668899999999997 5556553
No 9
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=61.63 E-value=7 Score=22.42 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=18.1
Q ss_pred cccCCCCCeEEEEEee--cccccce
Q psy17767 21 KKKWTRPPISMNFEVP--FAPSGFK 43 (64)
Q Consensus 21 ~~~~~~pPI~l~FeIP--~t~SGLq 43 (64)
...|..|+..|+|.++ -.++||+
T Consensus 39 I~~l~wpaMTM~F~v~~~~~l~~lk 63 (88)
T 2vb2_X 39 IAAVNWPEMTMRFTITPQTKMSEIK 63 (88)
T ss_dssp BGGGTBCSEEEEEECCTTCEECCCC
T ss_pred cccCCCCceEEEEEcCChhhhhcCC
Confidence 4568889999999997 6667664
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=51.59 E-value=58 Score=23.09 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=28.9
Q ss_pred EEEEEEEEeccccccccCCCCCeEEEEEee--c--------ccccceEeEEEEe
Q psy17767 7 TQLSAEIELLETDTKKKWTRPPISMNFEVP--F--------APSGFKVSHLSEI 50 (64)
Q Consensus 7 ~~L~a~v~L~s~~~~~~~~~pPI~l~FeIP--~--------t~SGLqVryLkV~ 50 (64)
..|.|+|.+.. .......+ |.++|+|- . .-|||-|+.+...
T Consensus 251 gkLiARf~~~g--~~~~~~~g-V~akF~~~~~~~~~~~~~~~gsgi~i~~~~~~ 301 (328)
T 3g9h_A 251 QRLIARFITDG--LAHESAKG-VITKFTISETDNVALPHSGAGSGITLTCQELD 301 (328)
T ss_dssp EEEEEEEEESS--CCCBCSSC-EEEEEEECCCSCSSCTTTTCSCCCEEEEEEES
T ss_pred CeEEEEEEcCC--CCCCCCCc-EEEEEEEeCCCcccccccccCCceeEEecccc
Confidence 67999999843 21222233 99999997 4 5789999888654
Done!