RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17767
         (64 letters)



>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
           adaptor AP-2 complex...; dishevelled, frizzled
           internalization; 3.50A {Mus musculus}
          Length = 385

 Score = 54.2 bits (129), Expect = 9e-11
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLS 48
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L 
Sbjct: 308 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLK 355


>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding
           site, protein-peptide complex, clathrin adaptor; 2.50A
           {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A
           3h85_A 1bxx_A 1hes_A 1h6e_A
          Length = 314

 Score = 51.8 bits (123), Expect = 6e-10
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLS 48
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L 
Sbjct: 237 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLK 284


>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative
           splicing, endocytosis, lipid-binding, golgi apparatus,
           adaptor, membrane, transport; HET: IHP; 2.59A {Rattus
           norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
          Length = 435

 Score = 50.8 bits (120), Expect = 1e-09
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLS 48
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L 
Sbjct: 358 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLK 405


>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich,
           coated PIT, golgi apparat membrane, phosphoprotein,
           protein transport, transport; 1.60A {Homo sapiens}
          Length = 301

 Score = 39.1 bits (90), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 1   MAGMKETQLSAEIEL---------LETDTKKKWTRPPISMNFEVP-FAPSGFKVSHLS 48
           + G  +     ++++           + +       P S++FE+P    SG +V  L 
Sbjct: 216 VQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQVRFLR 273


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 930,949
Number of extensions: 37650
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 4
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.2 bits)