RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17767
         (64 letters)



>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit
           (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 277

 Score = 60.8 bits (147), Expect = 9e-14
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 1   MAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVSHLS 48
           MAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KV +L 
Sbjct: 200 MAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLK 247


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 228,989
Number of extensions: 7698
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 2
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)