BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17773
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 41/45 (91%)
Query: 121 DEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
D +NPR+ID++RAR+L++DLKRC+YYETCATYGLNV+RVFQD
Sbjct: 129 DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 18/19 (94%)
Query: 4 YRNAAEIPIILVGTQDSDS 22
+RNA+E+P++LVGTQD+ S
Sbjct: 114 FRNASEVPMVLVGTQDAIS 132
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW-PE 125
V GN C DC E P WAS+NLG+ LCIQC G+HR LG H S+VRSL LD W PE
Sbjct: 42 VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPE 96
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW-PE 125
V GN C DC E P WAS+NLG+ LCIQC G+HR LG H S+VRSL LD W PE
Sbjct: 42 VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPE 96
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW-PE 125
V GN C DC E P WAS+NLG+ LCIQC G+HR LG H S+VRSL LD W PE
Sbjct: 42 VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPE 96
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 75 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDE- 133
N CADC GP WAS N+G+ +CI+C G+HR LG H+SRV+S+ LD+W + + + E
Sbjct: 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM 86
Query: 134 --ARARRL 139
+A RL
Sbjct: 87 GNGKANRL 94
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 121 DEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
D S+PR++ +ARAR L +D+KRCSYYETCATYGLNVDRVFQ+
Sbjct: 118 DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQE 162
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 75 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEW 123
N CADC GP WAS N+G+ +CI+C G+HR LG H+SRV+S+ LD+W
Sbjct: 29 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 77
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 37/45 (82%)
Query: 121 DEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
D S+PR++ +ARAR L +D+KRCSYYET ATYGLNVDRVFQ+
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQE 162
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
+ ++SR PGN C DC A PTW S NLG+L CIQC GVHR LG SR++SL LD
Sbjct: 14 IAEVKSR-PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD 69
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
+ ++SR PGN C DC A PTW S NLG+L CIQC GVHR LG SR++SL LD
Sbjct: 33 IAEVKSR-PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD 88
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 75 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEA 134
N C DC + P W S+N G+ LCI C GVHR LG H+S VRS+++D + + + ID+
Sbjct: 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKG 81
Query: 135 RARR 138
++
Sbjct: 82 GNKK 85
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 52 IQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAH 111
+ ++I+S +Q R+ GN C DC PTW S NLG+L CI+C G+HR LG H
Sbjct: 3 LTKEIISEVQ---------RMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVH 53
Query: 112 VSRVRSLELD 121
SR++SL LD
Sbjct: 54 YSRMQSLTLD 63
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 33/50 (66%)
Query: 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELD 121
VP N C DC P+WAS+ G+ LCI C GVHR LG H+S +RS ELD
Sbjct: 34 VPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELD 83
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 73 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRII- 131
PGN CADC P WAS LG+ +C+ C G+HR + VS+V+S+ LD W E+ +
Sbjct: 34 PGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMA 92
Query: 132 ----DEARAR 137
D ARAR
Sbjct: 93 SHGNDAARAR 102
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 73 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRII- 131
PGN CADC P WAS LG+ +C+ C G+HR + VS+V+S+ LD W E+ +
Sbjct: 32 PGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMA 90
Query: 132 ----DEARAR 137
D ARAR
Sbjct: 91 SHGNDAARAR 100
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE 122
+ +RS VP N C DC P+WAS+ G+ LCI C G HR LG H+S +RS ELD
Sbjct: 20 FKRLRS-VPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS 76
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 60 LQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLE 119
L+ Q +R+R P N TC DC PTW SL+ + +C+ C HR +G H+S VRS +
Sbjct: 22 LRDNFFQIVRNR-PENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSD 80
Query: 120 LDEW 123
LD++
Sbjct: 81 LDKF 84
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 54 QQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVS 113
Q + S L+ +R + N+ C +C P W S+ G+ +C++C G HR LG H+S
Sbjct: 17 QGMASPRTRKVLKEVRVQDENNV-CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLS 75
Query: 114 RVRSLELDEWPE 125
VRS+ +D+W +
Sbjct: 76 FVRSVTMDKWKD 87
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 75 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPE 125
N C +C P W S+ G+ +C++C G HR LG H+S VRS+ +D+W +
Sbjct: 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKD 88
>pdb|2RLO|A Chain A, Split Ph Domain Of Pi3-Kinase Enhancer
Length = 128
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 16 GTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61
G + ++FE LIVS + W FEAA+ EERD W+ AI+ QIL+SLQ
Sbjct: 83 GQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQ 128
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLEL 120
+P N C DC + GPT+ ++ +G +C C G R L RV+S+ +
Sbjct: 22 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISM 69
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLEL 120
+P N C DC + GPT+ ++ +G +C C G R L RV+S+ +
Sbjct: 17 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISM 64
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 16/76 (21%)
Query: 1 MSHYRNAAE------IPIILVGT---QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAA 51
+S+Y N E IP+ + T Q + FE++ + + F EER+DWI+
Sbjct: 37 ISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFEVVTT---QRTFVFRVEKEEERNDWISI 93
Query: 52 IQQQILSSLQTASLQS 67
+L++L++ SL S
Sbjct: 94 ----LLNALKSQSLTS 105
>pdb|1T2B|A Chain A, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
pdb|1T2B|B Chain B, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
Length = 397
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 103 GVHRCLGAHVSRVRS 117
G+HRCLGAH+ RV +
Sbjct: 336 GIHRCLGAHLIRVEA 350
>pdb|4FB2|A Chain A, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|B Chain B, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|C Chain C, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|D Chain D, Crystal Structure Of Substrate-Free P450cin
pdb|4FYZ|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FYZ|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FMX|A Chain A, Crystal Structure Of Substrate-Bound P450cin
pdb|4FMX|B Chain B, Crystal Structure Of Substrate-Bound P450cin
Length = 398
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 103 GVHRCLGAHVSRVRS 117
G+HRCLGAH+ RV +
Sbjct: 337 GIHRCLGAHLIRVEA 351
>pdb|3BDZ|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BDZ|B Chain B, The Role Of Asn 242 In P450cin
pdb|3BE0|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BE0|B Chain B, The Role Of Asn 242 In P450cin
Length = 397
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 103 GVHRCLGAHVSRVRS 117
G+HRCLGAH+ RV +
Sbjct: 336 GIHRCLGAHLIRVEA 350
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 117 SLELDEWPESNPRIIDEARARRLASDLK 144
S+ L +WPE++P + DEA ++ + LK
Sbjct: 780 SVHLADWPEADPALADEALVAQMRAVLK 807
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 17 TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQ 53
+++ + FE I++ D + +AA +ER +WI AIQ
Sbjct: 86 SEEENLFE--IITADEVHYFLQAATPKERTEWIKAIQ 120
>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin
Length = 129
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 17 TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQ 53
+++ + FE I++ D + +AA +ER +WI AIQ
Sbjct: 82 SEEENLFE--IITADEVHYFLQAATPKERTEWIKAIQ 116
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 5 RNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQ 53
R ++ ++ D DS + + +Q++ A +++ER W++ +Q
Sbjct: 52 RGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQ 100
>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
pdb|1ZM0|B Chain B, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
Length = 114
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 17 TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQ 53
+++ + FE I++ D + +AA +ER +WI AIQ
Sbjct: 73 SEEENLFE--IITADEVHYFLQAATPKERTEWIKAIQ 107
>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|B Chain B, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|C Chain C, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5F|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,5,6)p5
Length = 109
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 17 TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQ 53
+++ + FE I++ D + +AA +ER +WI AIQ
Sbjct: 71 SEEENLFE--IITADEVHYFLQAATPKERTEWIKAIQ 105
>pdb|3TYW|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|C Chain C, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|3TYW|D Chain D, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
A3(2)
pdb|4FXB|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces
Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
Siderophore Biosynthetic Pathway
pdb|4FXB|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces
Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
Siderophore Biosynthetic Pathway
Length = 417
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLN 158
GVH+C+G H++R LEL+ E+ ++ RLA + + AT+GL
Sbjct: 356 GVHQCVGQHLAR---LELEVALET---LLRRVPTLRLAGERDQVVVKHDSATFGLE 405
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
Mechanism For Histone Binding And Shuttling
Length = 417
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 40 ANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAG 85
A ++E+DD I I ++ + + Q LQSI+ R+ G+L D G
Sbjct: 42 AQAQEQDDKIGTINEEDILANQPLLLQSIQDRL-GSLVGQDSGYVG 86
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 127 NPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
+ R++ + + + LA C++ E+ A +NV+ +F D
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYD 160
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 127 NPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
+ R++ + + + LA C++ E+ A +NV+ +F D
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYD 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,526,727
Number of Sequences: 62578
Number of extensions: 150077
Number of successful extensions: 585
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 45
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)