Query psy17773
Match_columns 165
No_of_seqs 172 out of 1186
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:36:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 1.1E-37 3.7E-42 233.4 5.0 94 62-157 15-108 (134)
2 2crr_A Stromal membrane-associ 100.0 2.3E-37 7.9E-42 233.4 5.8 94 62-157 17-110 (141)
3 3dwd_A ADP-ribosylation factor 100.0 3.6E-37 1.2E-41 232.5 1.8 103 61-165 25-132 (147)
4 2owa_A Arfgap-like finger doma 100.0 2.4E-37 8.2E-42 232.3 0.8 101 62-164 24-129 (138)
5 2crw_A ARF GAP 3, ADP-ribosyla 100.0 7.3E-37 2.5E-41 232.1 2.6 102 62-165 17-122 (149)
6 3sub_A ADP-ribosylation factor 100.0 1.4E-36 4.8E-41 232.3 3.3 103 62-165 9-114 (163)
7 2olm_A Nucleoporin-like protei 100.0 1.9E-35 6.6E-40 222.7 8.3 92 62-156 13-105 (140)
8 2p57_A GTPase-activating prote 100.0 1.8E-36 6.1E-41 228.4 0.4 102 62-165 25-130 (144)
9 3jue_A Arfgap with coiled-coil 100.0 7.4E-32 2.5E-36 230.1 6.6 97 62-160 33-130 (368)
10 3lju_X ARF-GAP with dual PH do 100.0 5.7E-32 1.9E-36 232.7 5.3 96 62-160 22-117 (386)
11 3o47_A ADP-ribosylation factor 100.0 2.4E-30 8.4E-35 217.2 6.0 87 61-149 24-110 (329)
12 1dcq_A PYK2-associated protein 100.0 1.2E-29 4.1E-34 207.4 7.7 96 62-159 5-101 (278)
13 2b0o_E UPLC1; arfgap, structur 100.0 1.6E-29 5.5E-34 209.0 7.0 97 61-159 29-126 (301)
14 3lvq_E ARF-GAP with SH3 domain 100.0 1.3E-29 4.3E-34 221.7 5.9 98 60-159 9-107 (497)
15 2da0_A 130-kDa phosphatidylino 99.0 6.3E-10 2.1E-14 79.0 5.9 59 1-60 39-104 (114)
16 2rlo_A Centaurin-gamma 1; spli 99.0 7E-10 2.4E-14 80.3 6.1 42 20-61 87-128 (128)
17 1wjm_A Beta-spectrin III; PH d 98.9 1.1E-09 3.7E-14 78.5 4.9 40 19-58 79-118 (123)
18 2p0d_A RHO GTPase-activating p 98.9 2.4E-09 8.3E-14 78.1 5.2 40 19-58 86-125 (129)
19 1btn_A Beta-spectrin; signal t 98.9 1.9E-09 6.6E-14 74.6 4.3 37 19-55 70-106 (106)
20 1dro_A Beta-spectrin; cytoskel 98.8 3.7E-09 1.3E-13 75.8 5.8 40 19-58 81-120 (122)
21 2rsg_A Collagen type IV alpha- 98.8 1.6E-09 5.4E-14 74.0 3.2 36 19-55 57-92 (94)
22 2d9x_A Oxysterol binding prote 98.8 3.1E-09 1.1E-13 75.9 4.7 58 1-58 38-105 (120)
23 3rcp_A Pleckstrin homology dom 98.8 4E-09 1.4E-13 72.9 3.9 58 1-58 27-94 (103)
24 1wg7_A Dedicator of cytokinesi 98.8 1.5E-08 5.1E-13 74.7 7.1 61 1-61 57-128 (150)
25 2dhk_A TBC1 domain family memb 98.8 6.7E-09 2.3E-13 74.2 5.0 57 1-58 40-105 (119)
26 2cof_A Protein KIAA1914; PH do 98.7 8E-09 2.7E-13 72.3 4.2 39 19-57 63-101 (107)
27 2coc_A FYVE, rhogef and PH dom 98.7 1.8E-08 6.3E-13 72.3 5.3 47 9-56 52-105 (112)
28 3aj4_A Pleckstrin homology dom 98.7 1.8E-08 6E-13 70.6 4.8 35 22-56 76-110 (112)
29 1pls_A Pleckstrin homology dom 98.7 2.6E-08 9E-13 69.8 5.7 40 19-58 63-102 (113)
30 2j59_M RHO-GTPase activating p 98.7 1.8E-08 6.3E-13 75.8 5.1 38 19-57 74-111 (168)
31 1fao_A Dual adaptor of phospho 98.7 2.1E-08 7.1E-13 71.7 5.1 39 19-58 75-113 (126)
32 2cod_A Centaurin-delta 1; ARF 98.7 1.5E-08 5.1E-13 71.4 4.2 56 1-57 37-99 (115)
33 1v88_A Oxysterol binding prote 98.7 1.7E-08 5.7E-13 74.2 4.6 57 1-57 35-124 (130)
34 1wgq_A FYVE, rhogef and PH dom 98.7 1.7E-08 5.9E-13 70.4 4.4 37 21-57 67-103 (109)
35 2i5f_A Pleckstrin; PH domain, 98.7 2.5E-08 8.6E-13 69.2 5.1 36 21-56 73-108 (109)
36 1x1f_A Signal-transducing adap 98.7 2.5E-08 8.4E-13 75.1 5.1 36 21-57 78-113 (149)
37 1unq_A RAC-alpha serine/threon 98.6 3.4E-08 1.2E-12 70.5 5.2 59 1-59 37-112 (125)
38 1x05_A Pleckstrin; PH domain, 98.6 3.1E-08 1E-12 71.0 4.6 37 21-57 84-120 (129)
39 1wi1_A Calcium-dependent activ 98.6 4.7E-08 1.6E-12 71.9 5.7 38 19-57 73-110 (126)
40 2dkp_A Pleckstrin homology dom 98.6 4E-08 1.4E-12 70.1 5.2 38 20-57 82-119 (128)
41 3cxb_B Pleckstrin homology dom 98.6 5.4E-08 1.8E-12 69.1 5.8 41 19-59 63-103 (112)
42 1v89_A Hypothetical protein KI 98.6 5.4E-08 1.9E-12 68.1 5.5 39 20-58 68-113 (118)
43 2yry_A Pleckstrin homology dom 98.6 5.4E-08 1.8E-12 68.9 5.5 37 20-56 83-119 (122)
44 4h8s_A DCC-interacting protein 98.6 3.2E-08 1.1E-12 84.6 5.1 52 9-60 345-401 (407)
45 2d9y_A Pleckstrin homology dom 98.6 4.2E-08 1.5E-12 68.8 4.8 39 19-57 71-109 (117)
46 1v5p_A Pleckstrin homology dom 98.6 4.8E-08 1.7E-12 71.2 5.1 38 19-57 83-120 (126)
47 1upq_A PEPP1; PH domain, phosp 98.6 5.5E-08 1.9E-12 68.9 5.0 39 20-58 72-110 (123)
48 2d9v_A Pleckstrin homology dom 98.6 9.5E-08 3.2E-12 69.3 5.9 39 19-57 76-114 (130)
49 1fgy_A GRP1; PH domain, signal 98.6 7.3E-08 2.5E-12 68.4 5.2 58 1-58 33-121 (127)
50 2q13_A DCC-interacting protein 98.5 3.7E-08 1.3E-12 83.6 3.7 39 19-58 336-376 (385)
51 2lul_A Tyrosine-protein kinase 98.5 1.1E-07 3.6E-12 72.1 5.7 38 20-58 85-122 (164)
52 1x1g_A Pleckstrin 2; PH domain 98.5 7.7E-08 2.6E-12 68.8 4.2 38 21-58 88-125 (129)
53 3pp2_A RHO GTPase-activating p 98.5 1.3E-07 4.5E-12 68.3 5.4 39 19-57 85-123 (124)
54 3tfm_A Myosin X; split PH doma 98.5 1.1E-07 3.6E-12 75.7 5.3 57 1-58 91-156 (228)
55 3a8p_A T-lymphoma invasion and 98.5 1.1E-07 3.8E-12 77.5 5.3 40 20-59 87-126 (263)
56 1u5f_A SRC-associated adaptor 98.5 1.3E-07 4.5E-12 69.6 4.8 37 22-58 84-120 (148)
57 1u5d_A SKAP55, SRC kinase-asso 98.5 1.8E-07 6.1E-12 64.3 5.1 39 20-58 68-106 (108)
58 1eaz_A Tandem PH domain contai 98.5 2.6E-07 8.7E-12 65.5 5.9 38 20-58 75-112 (125)
59 2dn6_A KIAA0640 protein; PH do 98.4 4.1E-07 1.4E-11 63.5 6.4 39 19-58 66-104 (115)
60 1v5u_A SBF1, SET binding facto 98.4 2E-07 6.7E-12 65.3 4.6 37 20-57 75-111 (117)
61 1btk_A Bruton'S tyrosine kinas 98.4 2.9E-07 9.9E-12 70.2 5.8 34 23-57 99-132 (169)
62 2w2x_D 1-phosphatidylinositol- 98.4 1E-07 3.5E-12 68.8 2.9 39 20-58 80-120 (124)
63 2y7b_A Actin-binding protein a 98.4 2E-07 6.9E-12 67.0 4.4 39 20-58 72-129 (134)
64 1qqg_A IRS-1, insulin receptor 98.2 5.8E-07 2E-11 73.3 4.0 39 19-58 75-113 (264)
65 2r09_A Cytohesin-3; autoinhibi 98.2 1.1E-06 3.7E-11 74.1 5.2 65 1-65 241-336 (347)
66 2dtc_A RAL guanine nucleotide 98.2 2.5E-06 8.5E-11 62.6 5.7 50 9-58 59-113 (126)
67 3mpx_A FYVE, rhogef and PH dom 98.2 1.2E-06 4E-11 75.0 4.1 101 7-108 284-412 (434)
68 1u5e_A SRC-associated adaptor 98.1 2.7E-06 9.3E-11 67.0 5.5 38 21-58 172-209 (211)
69 1dyn_A Dynamin; signal transdu 98.1 2.3E-06 7.9E-11 62.7 4.7 54 1-54 42-114 (125)
70 4a6h_A Phosphatidylinositol 4, 98.1 3.1E-06 1.1E-10 61.2 4.4 36 21-56 76-117 (120)
71 3lju_X ARF-GAP with dual PH do 98.0 7.5E-06 2.6E-10 70.0 5.6 37 22-59 338-374 (386)
72 3a8n_A TIAM-1, T-lymphoma inva 97.9 6.3E-06 2.2E-10 67.9 4.4 39 19-57 86-124 (279)
73 2ys3_A UNC-112-related protein 97.9 1.2E-05 4.2E-10 59.7 4.6 55 1-55 40-110 (137)
74 2rov_A RHO-associated protein 97.7 3E-05 1E-09 55.7 4.7 37 21-57 74-115 (117)
75 2fjl_A 1-phosphatidylinositol- 97.7 4.4E-05 1.5E-09 57.5 5.3 40 19-58 108-149 (150)
76 3tca_A Amyloid beta A4 precurs 97.6 5.9E-05 2E-09 60.7 5.5 38 19-56 233-275 (291)
77 1v61_A RAC/CDC42 guanine nucle 97.6 5.3E-05 1.8E-09 55.9 4.6 58 1-58 65-127 (132)
78 1zc3_B Exocyst complex protein 97.6 0.00011 3.7E-09 52.6 6.0 39 21-60 72-110 (113)
79 3tfm_A Myosin X; split PH doma 97.5 5E-05 1.7E-09 60.1 3.4 36 19-55 192-227 (228)
80 2d9w_A Docking protein 2; PH d 97.3 0.00029 1E-08 51.5 4.8 33 20-54 86-118 (127)
81 3qwm_A Iqsec1, IQ motif and SE 97.2 0.00097 3.3E-08 49.6 7.3 58 3-60 59-125 (140)
82 1w1g_A HPDK1, 3-phosphoinositi 97.2 0.00038 1.3E-08 52.4 4.6 48 9-58 92-140 (151)
83 2vrw_B P95VAV, VAV1, proto-onc 97.0 0.001 3.5E-08 56.3 6.0 82 22-103 299-390 (406)
84 1xcg_A PDZ-rhogef, RHO guanine 96.8 0.002 6.8E-08 53.6 6.2 52 7-58 310-367 (368)
85 1z87_A Alpha-1-syntrophin; pro 96.4 0.0055 1.9E-07 49.8 6.2 49 9-57 207-262 (263)
86 3ky9_A Proto-oncogene VAV; cal 96.4 0.0028 9.6E-08 56.4 4.7 82 22-107 471-559 (587)
87 1nty_A Triple functional domai 96.4 0.0032 1.1E-07 51.4 4.5 41 19-59 266-310 (311)
88 1kz7_A Guanine nucleotide exch 96.2 0.0046 1.6E-07 51.5 5.0 42 20-61 287-329 (353)
89 3t06_A PDZ-rhogef, RHO guanine 96.2 0.0068 2.3E-07 51.3 5.9 50 9-58 354-409 (418)
90 1dbh_A Protein (human SOS 1); 96.2 0.0036 1.2E-07 51.9 4.1 37 22-58 314-350 (354)
91 1foe_A T-lymphoma invasion and 96.0 0.0098 3.3E-07 49.7 6.0 38 24-61 326-370 (377)
92 2adz_A Alpha-1-syntrophin; pro 96.0 0.011 3.7E-07 45.6 5.7 50 8-57 121-177 (178)
93 4f7h_A Fermitin family homolog 96.0 0.0045 1.5E-07 47.3 3.5 55 1-55 78-148 (173)
94 2lg1_A A-kinase anchor protein 96.0 0.011 3.8E-07 45.3 5.8 37 22-58 134-173 (185)
95 2z0q_A XPLN, RHO guanine nucle 95.9 0.0067 2.3E-07 50.0 4.3 35 22-56 308-345 (346)
96 4bbk_A Kindlin-1, fermitin fam 95.9 0.006 2.1E-07 46.2 3.5 55 1-55 57-127 (165)
97 3jzy_A Intersectin 2; C2 domai 95.8 0.0016 5.4E-08 56.3 0.0 41 20-61 326-366 (510)
98 4ejn_A RAC-alpha serine/threon 95.7 0.01 3.5E-07 50.2 4.9 39 20-58 68-109 (446)
99 2rgn_B RHOA/RAC/CDC42 exchange 95.7 0.0098 3.4E-07 49.5 4.7 51 9-59 263-320 (354)
100 2dfk_A Collybistin II; DH doma 95.7 0.023 7.8E-07 48.1 6.9 39 22-60 327-366 (402)
101 3hk0_A Growth factor receptor- 95.6 0.019 6.4E-07 46.5 5.8 38 19-57 197-240 (256)
102 3p6a_A RHO guanine nucleotide 95.4 0.027 9.3E-07 46.7 6.2 38 21-58 332-372 (377)
103 3ksy_A SOS-1, SON of sevenless 95.4 0.051 1.7E-06 51.7 8.7 62 4-65 488-554 (1049)
104 2d9z_A Protein kinase C, NU ty 95.4 0.025 8.6E-07 41.3 5.1 35 22-57 74-123 (129)
105 2pz1_A RHO guanine nucleotide 95.4 0.023 7.9E-07 48.8 5.8 39 22-60 404-443 (466)
106 3odw_A RHO guanine nucleotide 95.4 0.024 8.3E-07 50.0 6.1 41 19-59 483-526 (536)
107 1txd_A RHO guanine nucleotide 95.2 0.026 8.9E-07 47.2 5.4 28 32-59 344-371 (385)
108 1mai_A Phospholipase C delta-1 95.1 0.038 1.3E-06 39.8 5.4 37 21-57 84-121 (131)
109 1v5m_A SH2 and PH domain-conta 94.9 0.027 9.4E-07 41.4 4.3 39 19-57 92-130 (136)
110 4gmv_A RAS-associated and plec 94.8 0.045 1.5E-06 44.9 5.7 39 19-57 223-266 (281)
111 2coa_A Protein kinase C, D2 ty 94.7 0.02 6.8E-07 41.7 2.9 36 21-57 73-119 (125)
112 1gnf_A Transcription factor GA 89.7 0.15 5E-06 30.7 1.6 39 73-111 2-41 (46)
113 2vut_I AREA, nitrogen regulato 86.8 0.22 7.7E-06 29.4 1.1 35 76-110 2-37 (43)
114 3dfx_A Trans-acting T-cell-spe 85.4 0.22 7.6E-06 31.8 0.6 39 72-110 4-43 (63)
115 1fho_A UNC-89; pleckstrin homo 83.6 0.35 1.2E-05 34.5 1.1 38 20-57 71-112 (119)
116 4gat_A Nitrogen regulatory pro 83.1 0.49 1.7E-05 30.5 1.6 39 72-110 6-45 (66)
117 1u5k_A Hypothetical protein; O 81.1 0.78 2.7E-05 35.9 2.4 33 72-104 147-179 (244)
118 4hc9_A Trans-acting T-cell-spe 80.3 0.54 1.9E-05 33.4 1.1 38 74-111 4-42 (115)
119 3g9m_A Glucocorticoid receptor 76.6 0.82 2.8E-05 30.9 1.1 30 74-106 1-30 (90)
120 2kae_A GATA-type transcription 73.2 0.6 2.1E-05 30.5 -0.3 37 73-110 6-45 (71)
121 2kgo_A Uncharacterized protein 73.2 0.66 2.3E-05 32.7 -0.1 33 74-106 55-88 (108)
122 3ml4_A Protein DOK-7; tyrosine 71.2 6.1 0.00021 31.2 5.0 37 19-56 76-112 (224)
123 1hcq_A Protein (estrogen recep 69.4 1.9 6.6E-05 28.8 1.5 32 73-107 2-33 (84)
124 2nll_B Protein (thyroid hormon 68.4 1.5 5E-05 30.5 0.8 29 76-107 2-30 (103)
125 1tjl_A DNAK suppressor protein 67.8 2.9 9.8E-05 31.0 2.3 35 72-106 108-143 (151)
126 2ebl_A COUP transcription fact 67.6 1.8 6.1E-05 29.3 1.1 33 72-107 4-36 (89)
127 3v5w_A G-protein coupled recep 66.8 11 0.00037 34.4 6.4 40 20-59 615-654 (689)
128 2han_B Ecdysone receptor; tran 66.6 2.2 7.6E-05 30.3 1.5 30 74-106 7-36 (119)
129 2zet_C Melanophilin; complex, 66.5 19 0.00066 26.5 6.7 75 33-107 10-105 (153)
130 1r4i_A Androgen receptor; AR, 66.1 1.5 5E-05 30.7 0.4 32 72-106 4-35 (105)
131 1d4u_A Nucleotide excision rep 66.0 1.4 4.9E-05 31.1 0.3 33 73-105 3-36 (111)
132 2han_A Protein ultraspiracle; 65.5 2.1 7.1E-05 29.2 1.1 32 73-107 8-39 (93)
133 4hc9_A Trans-acting T-cell-spe 64.7 2.7 9.3E-05 29.7 1.6 39 73-111 57-96 (115)
134 1zbd_B Rabphilin-3A; G protein 62.6 16 0.00054 26.3 5.4 69 37-105 7-90 (134)
135 2a66_A Orphan nuclear receptor 62.1 1.7 5.8E-05 30.7 0.1 33 72-107 6-38 (113)
136 1dsz_A RAR-alpha, retinoic aci 61.9 2.4 8.1E-05 28.4 0.8 29 76-107 5-33 (86)
137 1cit_A NGFI-B, protein (orphan 61.7 3 0.0001 28.1 1.3 28 77-107 2-29 (89)
138 1ynw_B Retinoic acid receptor 60.5 2.1 7.3E-05 29.4 0.4 29 75-106 3-31 (99)
139 1dl6_A Transcription factor II 60.2 4.5 0.00015 25.0 1.8 31 75-106 11-41 (58)
140 3hie_A Protein PSL1, exocyst c 59.3 14 0.00048 27.9 4.8 32 21-54 114-145 (171)
141 1a6y_A Orphan nuclear receptor 59.3 2.9 9.8E-05 28.5 0.9 32 73-107 5-36 (94)
142 1kb2_A Vitamin D3 receptor; VD 59.1 2.6 8.8E-05 29.6 0.6 30 74-106 5-34 (110)
143 1dsz_B RXR-alpha, retinoic aci 58.0 1.8 6.1E-05 29.0 -0.4 31 74-107 4-34 (85)
144 1lo1_A Steroid hormone recepto 54.7 2.2 7.7E-05 29.3 -0.3 30 75-107 4-33 (98)
145 2zkm_X 1-phosphatidylinositol- 53.4 13 0.00046 34.2 4.6 36 22-57 96-135 (799)
146 3cbb_A HNF-4-alpha, hepatocyte 53.1 3.7 0.00013 26.9 0.6 28 77-107 2-29 (78)
147 4hn5_A Glucocorticoid receptor 52.3 4.4 0.00015 28.7 0.9 32 72-106 26-57 (117)
148 3dzy_D Peroxisome proliferator 52.1 4.3 0.00015 34.5 1.0 31 73-106 48-78 (419)
149 1ffk_W Ribosomal protein L37AE 51.2 16 0.00055 23.7 3.4 37 65-103 17-53 (73)
150 3a58_A Exocyst complex compone 51.1 19 0.00065 29.7 4.6 36 21-58 184-219 (320)
151 3qr0_A Phospholipase C-beta (P 50.9 19 0.00064 33.4 5.1 35 22-56 103-141 (816)
152 3ulb_A Target of rapamycin com 49.7 46 0.0016 23.7 5.9 36 22-57 74-114 (121)
153 2uzg_A Ubiquitin carboxyl-term 46.5 12 0.00041 25.3 2.4 28 73-100 23-53 (97)
154 1k81_A EIF-2-beta, probable tr 45.1 10 0.00036 21.0 1.6 27 77-103 2-29 (36)
155 1pft_A TFIIB, PFTFIIBN; N-term 44.5 11 0.00038 22.0 1.7 30 75-105 5-34 (50)
156 3k1f_M Transcription initiatio 43.8 16 0.00054 28.0 2.9 29 77-105 23-52 (197)
157 3ohm_B 1-phosphatidylinositol- 42.6 21 0.00073 33.4 4.1 36 22-57 100-139 (885)
158 3a98_B Engulfment and cell mot 42.1 36 0.0012 26.1 4.8 32 23-54 116-147 (203)
159 2kq9_A DNAK suppressor protein 41.1 3.2 0.00011 29.0 -1.3 38 64-103 72-110 (112)
160 4bbr_M Transcription initiatio 41.0 14 0.00048 30.5 2.4 28 77-104 23-51 (345)
161 3dzy_A Retinoic acid receptor 39.8 4.8 0.00016 34.8 -0.7 30 74-106 136-165 (467)
162 4glq_A Methyl-accepting chemot 39.7 20 0.00068 25.9 2.9 30 122-152 132-161 (171)
163 3cit_A Sensor histidine kinase 38.9 24 0.00083 26.2 3.2 67 78-146 78-148 (160)
164 3k7a_M Transcription initiatio 38.0 13 0.00043 30.7 1.7 31 76-106 22-53 (345)
165 2g45_A Ubiquitin carboxyl-term 37.6 21 0.00071 25.5 2.6 30 72-101 31-60 (129)
166 3c5k_A HD6, histone deacetylas 32.2 32 0.0011 23.7 2.8 25 75-99 24-48 (109)
167 1qyp_A RNA polymerase II; tran 31.6 19 0.00065 21.6 1.3 32 75-106 15-54 (57)
168 3j21_g 50S ribosomal protein L 30.9 13 0.00044 22.5 0.4 27 72-104 11-37 (51)
169 1vq8_Z 50S ribosomal protein L 30.9 22 0.00075 23.5 1.6 31 72-104 24-54 (83)
170 3j21_d 50S ribosomal protein L 30.0 17 0.00058 24.5 1.0 30 72-102 30-76 (89)
171 1hyw_A GPW, head-TO-tail joini 28.9 90 0.0031 19.7 4.3 32 26-58 25-56 (68)
172 1ovx_A ATP-dependent CLP prote 27.3 37 0.0013 21.7 2.1 29 75-103 18-48 (67)
173 3j21_i 50S ribosomal protein L 25.7 42 0.0014 22.3 2.3 30 72-103 32-61 (83)
174 3j20_Y 30S ribosomal protein S 25.2 40 0.0014 19.9 2.0 30 74-105 18-47 (50)
175 2yqp_A Probable ATP-dependent 24.4 42 0.0014 20.8 1.9 20 72-100 16-35 (60)
176 3cc2_Z 50S ribosomal protein L 24.3 21 0.00071 25.3 0.6 40 63-104 48-87 (116)
177 2ds5_A CLPX, ATP-dependent CLP 23.9 56 0.0019 19.5 2.4 29 75-103 11-41 (51)
178 3izc_m 60S ribosomal protein R 23.7 57 0.0019 22.1 2.7 30 72-103 33-62 (92)
179 2ida_A Hypothetical protein; z 23.2 18 0.00061 25.0 0.0 27 72-98 15-45 (102)
180 3iz5_m 60S ribosomal protein L 21.5 60 0.002 21.9 2.4 30 72-103 33-62 (92)
181 2wzo_A Transforming growth fac 20.4 1.8E+02 0.006 20.7 5.0 57 21-80 65-138 (146)
182 3u5e_g 60S ribosomal protein L 20.2 36 0.0012 24.2 1.1 31 72-102 38-85 (121)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=233.41 Aligned_cols=94 Identities=36% Similarity=0.702 Sum_probs=89.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS 141 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n 141 (165)
+.+|+.|++ .|+|+.|||||+++|+|+|+|+|||+|++|||+||.||+|||+||||+||.|++++|+.| +.+||..+|
T Consensus 15 ~~~l~~L~~-~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m-~~~GN~~an 92 (134)
T 2iqj_A 15 QAVLANLLL-EEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM-QEMGNGKAN 92 (134)
T ss_dssp HHHHHHHTT-SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH-HTCHHHHHH
T ss_pred HHHHHHHHc-CcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH-HHHchHHHH
Confidence 567889998 999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhcCCCCCCCCCC
Q psy17773 142 DLKRCSYYETCATYGL 157 (165)
Q Consensus 142 ~~~e~~~~~~~~~~~~ 157 (165)
++||+++|+...+|..
T Consensus 93 ~~~e~~lp~~~~~P~~ 108 (134)
T 2iqj_A 93 RLYEAYLPETFRRPQI 108 (134)
T ss_dssp HHHTTTCCSSCCCCCS
T ss_pred HHHHhcCCccCCCCCc
Confidence 9999999998766643
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=233.39 Aligned_cols=94 Identities=34% Similarity=0.660 Sum_probs=89.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS 141 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n 141 (165)
+.+|+.|++ .|+|+.|||||+++|+|+|+|+|||||++|+|+||.||+|||+||||+||.|++++|++| +.+||..+|
T Consensus 17 ~~~l~~L~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m-~~~GN~~an 94 (141)
T 2crr_A 17 QLILSKLLR-EEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCM-QDMGNTKAR 94 (141)
T ss_dssp HHHHHHHHH-SGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHH-HHTHHHHHH
T ss_pred HHHHHHHHh-CccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHH-HHHccHHHH
Confidence 567889998 999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhcCCCCCCCCCC
Q psy17773 142 DLKRCSYYETCATYGL 157 (165)
Q Consensus 142 ~~~e~~~~~~~~~~~~ 157 (165)
++||+++|+...+|..
T Consensus 95 ~~~e~~lp~~~~~P~~ 110 (141)
T 2crr_A 95 LLYEANLPENFRRPQT 110 (141)
T ss_dssp HHGGGSCCTTCCCCCS
T ss_pred HHHHhcCCcccCCCCc
Confidence 9999999998766643
No 3
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=232.48 Aligned_cols=103 Identities=26% Similarity=0.567 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHH
Q psy17773 61 QTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLA 140 (165)
Q Consensus 61 ~~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~ 140 (165)
.+++|+.|++ .|+|+.|+|||+++|+|+|+|||||+|++|+|+||.||+|||+||||+||.|++++|+.| +.+||.++
T Consensus 25 ~~~~l~~L~~-~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m-~~~GN~~a 102 (147)
T 3dwd_A 25 TRKVLKEVRV-QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGNAKF 102 (147)
T ss_dssp HHHHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHH-HHCCHHHH
T ss_pred HHHHHHHHHc-CcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHH-HHHhhHHH
Confidence 3678899998 999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhhhcCC--CC---CCCCCCCCCccccC
Q psy17773 141 SDLKRCSYY--ET---CATYGLNVDRVFQD 165 (165)
Q Consensus 141 n~~~e~~~~--~~---~~~~~~~~~~~~~~ 165 (165)
|+|||++.. +. ..||.+.+..+|||
T Consensus 103 n~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~ 132 (147)
T 3dwd_A 103 REFLESQEDYDPCWSLQEKYNSRAAALFRD 132 (147)
T ss_dssp HHHHHTSTTCCTTCCHHHHHTSHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCHHHhhCCHHHHHHHH
Confidence 999999742 11 24788888777764
No 4
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.4e-37 Score=232.32 Aligned_cols=101 Identities=27% Similarity=0.471 Sum_probs=87.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS 141 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n 141 (165)
+.+++.|++ .|+|+.|||||+++|+|+|+|||||+|++|||+||.||+|||+|||++||.|++++|+.| +.+||..+|
T Consensus 24 ~~l~~~l~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m-~~~GN~~an 101 (138)
T 2owa_A 24 DNFFQIVRN-RPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRM-DIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHH-SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHH-HHCCHHHHH
T ss_pred HHHHHHHHc-CcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHH-HhhccHHHH
Confidence 445677888 999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhcCCCC-----CCCCCCCCCcccc
Q psy17773 142 DLKRCSYYET-----CATYGLNVDRVFQ 164 (165)
Q Consensus 142 ~~~e~~~~~~-----~~~~~~~~~~~~~ 164 (165)
++||++.... ..+|++.+...|+
T Consensus 102 ~~~e~~~~~~~~~~~~~kY~s~~a~~Y~ 129 (138)
T 2owa_A 102 NYFKQVLGVNFSPKTKEYASSICGRQYK 129 (138)
T ss_dssp HHHHHHTCTTCCGGGCHHHHSHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHhhHHHHHHH
Confidence 9999943321 2345555555554
No 5
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=7.3e-37 Score=232.11 Aligned_cols=102 Identities=35% Similarity=0.677 Sum_probs=92.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCC-CCCchHHHHHHHhhHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-WPESNPRIIDEARARRLA 140 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~-w~~~~v~~~~~~~GN~~~ 140 (165)
+.+++.|++ .|+|+.|||||+++|+|+|+|||||||++|+|+||.||+|||+|||++||. |++++|+.| +.+||.++
T Consensus 17 ~~~l~~L~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m-~~~GN~~a 94 (149)
T 2crw_A 17 LTIFKRLRS-VPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNASA 94 (149)
T ss_dssp HHHHHHHHH-STTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHhc-CcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHH-HHHhhHHH
Confidence 346788888 999999999999999999999999999999999999999999999999995 999999999 99999999
Q ss_pred HHHhhhcCCCCC---CCCCCCCCccccC
Q psy17773 141 SDLKRCSYYETC---ATYGLNVDRVFQD 165 (165)
Q Consensus 141 n~~~e~~~~~~~---~~~~~~~~~~~~~ 165 (165)
|++||++..... .+|..++...|||
T Consensus 95 n~~~e~~~~~~~~i~~KY~s~~a~~Yr~ 122 (149)
T 2crw_A 95 SSFFHQHGCSTNDTNAKYNSRAAQLYRE 122 (149)
T ss_dssp HHHHHHHCCCCCCHHHHTTSHHHHHHHH
T ss_pred HHHHHhcCCCCcchhhCcCcHHHHHHHH
Confidence 999999987643 3777777777764
No 6
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.4e-36 Score=232.32 Aligned_cols=103 Identities=26% Similarity=0.563 Sum_probs=94.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS 141 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n 141 (165)
.++|+.|++..|+|+.|||||+++|+|+|+|+|||+|++|||+||.||+|||+||||+||.|++++|+.| +.+||.++|
T Consensus 9 ~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m-~~~GN~~an 87 (163)
T 3sub_A 9 VEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYI-DKGGNKKCQ 87 (163)
T ss_dssp HHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHH-HHCCHHHHH
T ss_pred HHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHH-HhhCHHHHH
Confidence 5678888886799999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhcCCCCC---CCCCCCCCccccC
Q psy17773 142 DLKRCSYYETC---ATYGLNVDRVFQD 165 (165)
Q Consensus 142 ~~~e~~~~~~~---~~~~~~~~~~~~~ 165 (165)
++||++..... .+|.+.+..+||+
T Consensus 88 ~~~e~~g~~~~~p~~KY~s~aA~~Yr~ 114 (163)
T 3sub_A 88 TYLENYGISDFIPERKYRTKAADHYRK 114 (163)
T ss_dssp HHHHHTTCTTSCHHHHTTBHHHHHHHH
T ss_pred HHHHHcCCcccChhhcCCCHHHHHHHH
Confidence 99999876654 3788887777764
No 7
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.9e-35 Score=222.67 Aligned_cols=92 Identities=21% Similarity=0.505 Sum_probs=85.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS 141 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n 141 (165)
...|+.|++ .|+|+.|||||+++|+|+|+|||||||++|||+||.||+| |+||||+||.|++++|++| +.+||..+|
T Consensus 13 ~~~l~~l~~-~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m-~~~GN~~an 89 (140)
T 2olm_A 13 LKMLRDMTG-LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFL-QKHGNEVCK 89 (140)
T ss_dssp HHHHHHHHT-SGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHH-HHCHHHHHH
T ss_pred HHHHHHHhc-CcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHH-HHhccHHHH
Confidence 567888888 9999999999999999999999999999999999999996 9999999999999999999 999999999
Q ss_pred HHhhhcCCCCC-CCCC
Q psy17773 142 DLKRCSYYETC-ATYG 156 (165)
Q Consensus 142 ~~~e~~~~~~~-~~~~ 156 (165)
++||+++++.. .+|.
T Consensus 90 ~~~e~~~~~~~~~~P~ 105 (140)
T 2olm_A 90 QIWLGLFDDRSSAIPD 105 (140)
T ss_dssp HHHTTTCCTTTSCCCC
T ss_pred HHHHhhCCcccCCCCC
Confidence 99999998743 3443
No 8
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=228.42 Aligned_cols=102 Identities=33% Similarity=0.681 Sum_probs=91.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCC-CCCchHHHHHHHhhHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-WPESNPRIIDEARARRLA 140 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~-w~~~~v~~~~~~~GN~~~ 140 (165)
+++++.|++ .|+|+.|+|||+++|+|+|+|||||+|++|+|+||.||+|||+|||++||. |++++|+.| +.+||.++
T Consensus 25 ~~~l~~L~~-~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m-~~~GN~~a 102 (144)
T 2p57_A 25 QTLFKRLRA-VPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCM-QVGGNANA 102 (144)
T ss_dssp HHHHHHHHH-SGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHH-HHCCHHHH
T ss_pred HHHHHHHhc-CCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHH-HHhCHHHH
Confidence 456788888 999999999999999999999999999999999999999999999999996 999999999 99999999
Q ss_pred HHHhhhcCCCC---CCCCCCCCCccccC
Q psy17773 141 SDLKRCSYYET---CATYGLNVDRVFQD 165 (165)
Q Consensus 141 n~~~e~~~~~~---~~~~~~~~~~~~~~ 165 (165)
|++|+++.... ..+|.+++..+|||
T Consensus 103 n~~~e~~g~~~~~~~~KY~s~aA~~Yr~ 130 (144)
T 2p57_A 103 TAFFRQHGCTANDANTKYNSRAAQMYRE 130 (144)
T ss_dssp HHHHHHTTCCCCSHHHHHTSHHHHHHHH
T ss_pred HHHHHHcCCCCCchhhccCcHHHHHHHH
Confidence 99999875432 24687777777764
No 9
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.97 E-value=7.4e-32 Score=230.14 Aligned_cols=97 Identities=36% Similarity=0.710 Sum_probs=89.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS 141 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n 141 (165)
.++++.|++ .|+|+.|||||+++|+|+|+|+|||+|++|+||||.||+|||+||||+||.|++++|++| +.+||..+|
T Consensus 33 ~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~-~~~gn~~~n 110 (368)
T 3jue_A 33 GHVVAQVQS-VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLM-CELGNVIIN 110 (368)
T ss_dssp CCHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH-HHSCHHHHH
T ss_pred HHHHHHHHc-CCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHH-HHHccHHHH
Confidence 357899999 999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhcCCCCC-CCCCCCCC
Q psy17773 142 DLKRCSYYETC-ATYGLNVD 160 (165)
Q Consensus 142 ~~~e~~~~~~~-~~~~~~~~ 160 (165)
++||+++++.. .+|....+
T Consensus 111 ~~~e~~~~~~~~~kp~~~~~ 130 (368)
T 3jue_A 111 QIYEARVEAMAVKKPGPSCS 130 (368)
T ss_dssp HHHTTTTTTTTCCCCCTTSC
T ss_pred HHHHhhcccccCcCCCCCCC
Confidence 99999999854 45554443
No 10
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=5.7e-32 Score=232.74 Aligned_cols=96 Identities=28% Similarity=0.577 Sum_probs=90.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS 141 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n 141 (165)
.++|+.|++ .|+|+.|||||+++|+|||+|+|||+|++|||+||.| +|||+||||+||.|++++|+.| +.+||..+|
T Consensus 22 ~~~l~~l~~-~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~-~~~gN~~~~ 98 (386)
T 3lju_X 22 RRAVLELLQ-RPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFM-ASHGNDAAR 98 (386)
T ss_dssp HHHHHHHTT-SGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHH-HHSSHHHHH
T ss_pred HHHHHHHhc-CcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHH-HHhcchHHH
Confidence 567899998 9999999999999999999999999999999999999 9999999999999999999999 999999999
Q ss_pred HHhhhcCCCCCCCCCCCCC
Q psy17773 142 DLKRCSYYETCATYGLNVD 160 (165)
Q Consensus 142 ~~~e~~~~~~~~~~~~~~~ 160 (165)
++||+++|+...+|....+
T Consensus 99 ~~~e~~~~~~~~~p~~~~~ 117 (386)
T 3lju_X 99 ARFESKVPSFYYRPTPSDC 117 (386)
T ss_dssp HHHTTTCCTTSCCCCTTSC
T ss_pred HHHhccCCccCCCCCCccc
Confidence 9999999998777766554
No 11
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.4e-30 Score=217.22 Aligned_cols=87 Identities=28% Similarity=0.604 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHH
Q psy17773 61 QTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLA 140 (165)
Q Consensus 61 ~~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~ 140 (165)
.++.++.|++ .|+|+.|||||+++|+|+|+|+|||+|++|||+||.||+|||+|||++||.|++++++.| +.+||.++
T Consensus 24 ~~~~~~~~~~-~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~-~~~gN~~~ 101 (329)
T 3o47_A 24 TRKVLKEVRV-QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGNAKF 101 (329)
T ss_dssp HHHHHHHHHH-STTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHH-HHCCHHHH
T ss_pred HHHHHHHHHc-CCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHH-HHhCcHHH
Confidence 3667889998 999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhhhcCC
Q psy17773 141 SDLKRCSYY 149 (165)
Q Consensus 141 n~~~e~~~~ 149 (165)
|++||++..
T Consensus 102 n~~~e~~~~ 110 (329)
T 3o47_A 102 REFLESQED 110 (329)
T ss_dssp HHHHHTCSS
T ss_pred HHHHHhcCC
Confidence 999999754
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.96 E-value=1.2e-29 Score=207.43 Aligned_cols=96 Identities=31% Similarity=0.582 Sum_probs=88.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHH
Q psy17773 62 TASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS 141 (165)
Q Consensus 62 ~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n 141 (165)
++.++.|++ .|+|+.|+|||+++|+|+|+|||+|+|++|||+||.||+|||+|||++||.|+++++..| ..+||..+|
T Consensus 5 ~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~-~~~GN~~~n 82 (278)
T 1dcq_A 5 KEIISEVQR-MTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLA-KNIGNAGFN 82 (278)
T ss_dssp HHHHHHHHH-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHH-HHSCHHHHH
T ss_pred HHHHHHHHc-CCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHH-HHcCcHHHH
Confidence 456888998 999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhcCCCCCC-CCCCCC
Q psy17773 142 DLKRCSYYETCA-TYGLNV 159 (165)
Q Consensus 142 ~~~e~~~~~~~~-~~~~~~ 159 (165)
++||+.+|.... +|....
T Consensus 83 ~i~e~~l~~~~~~kP~~~s 101 (278)
T 1dcq_A 83 EIMECCLPSEDPVKPNPGS 101 (278)
T ss_dssp HHHTTTCCSSSCCSCCTTC
T ss_pred HHHHhhCChhhcCCCCCCC
Confidence 999999988764 555443
No 13
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=208.99 Aligned_cols=97 Identities=34% Similarity=0.557 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHHH
Q psy17773 61 QTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLA 140 (165)
Q Consensus 61 ~~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~ 140 (165)
.+.+++.|++ .|+|+.|+|||+++|+|+|+|+|+|+|++|||+||.||+|+|+|||++||.|+++++..| ..+||..+
T Consensus 29 ~~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~-~~~GN~~~ 106 (301)
T 2b0o_E 29 TKLLIAEVKS-RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLA-LNMGNTSF 106 (301)
T ss_dssp HHHHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH-HHCCHHHH
T ss_pred HHHHHHHHhc-CCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHH-HHcCCHHH
Confidence 3556788888 999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhhhcCCCC-CCCCCCCC
Q psy17773 141 SDLKRCSYYET-CATYGLNV 159 (165)
Q Consensus 141 n~~~e~~~~~~-~~~~~~~~ 159 (165)
|++||+.+++. ..+|....
T Consensus 107 n~i~E~~l~~~~~~kP~~~s 126 (301)
T 2b0o_E 107 NEVMEAQLPSHGGPKPSAES 126 (301)
T ss_dssp HHHHTTTCCSSSCSCCCTTC
T ss_pred HHHHHHhhhhccCCCCCCcc
Confidence 99999999886 45554433
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.3e-29 Score=221.74 Aligned_cols=98 Identities=35% Similarity=0.565 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccccccCCCccceeeeccCCCCCCchHHHHHHHhhHHH
Q psy17773 60 LQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139 (165)
Q Consensus 60 l~~~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~ 139 (165)
+.+..++.+++ .|+|+.|+|||+++|+|+|+|+|||+|++|||+||.||+|||+|||++||.|+++++++| +.+||..
T Consensus 9 ~~~~~~~~~~~-~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~-~~~GN~~ 86 (497)
T 3lvq_E 9 LTKLLIAEVKS-RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLA-LNMGNTS 86 (497)
T ss_dssp HHHHHHHHHHT-STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTT-TTCCHHH
T ss_pred HHHHHHHHHhc-CCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHH-HHHhhHH
Confidence 34567888998 999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhhhcCCCCC-CCCCCCC
Q psy17773 140 ASDLKRCSYYETC-ATYGLNV 159 (165)
Q Consensus 140 ~n~~~e~~~~~~~-~~~~~~~ 159 (165)
+|.+||+.+|+.. .+|....
T Consensus 87 an~i~E~~lp~~~~~kP~~~s 107 (497)
T 3lvq_E 87 FNEVMEAQLPSHGGPKPSAES 107 (497)
T ss_dssp HHHHHTTTCCSSSCSCCCTTC
T ss_pred HHHHHHhhcccccCCCCCCcC
Confidence 9999999998765 4444433
No 15
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=6.3e-10 Score=78.95 Aligned_cols=59 Identities=14% Similarity=0.315 Sum_probs=44.9
Q ss_pred CCCCCCCccccc-----ccccc--cCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773 1 MSHYRNAAEIPI-----ILVGT--QDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL 60 (165)
Q Consensus 1 ~s~y~~~~~i~~-----~~~~~--~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l 60 (165)
|+||+.....+. ..+.+ ..+++++|+|++ ++|+|+|+|+|++|++.||.+|+.++...+
T Consensus 39 L~yyk~~~~~~~~~i~l~~~~v~~~~~~~~~F~I~~-~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 104 (114)
T 2da0_A 39 LTISHATSNRQPAKLNLLTCQVKPNAEDKKSFDLIS-HNRTYHFQAEDEQDYVAWISVLTNSKEEAL 104 (114)
T ss_dssp EEECCSSCCSCCEEEETTTSEEEECSSSSSCEEEEE-TTEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCEEEeeeeEEEECCCCCCEEEEEc-CCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 467777654322 22222 256789999998 899999999999999999999999887654
No 16
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=98.98 E-value=7e-10 Score=80.33 Aligned_cols=42 Identities=57% Similarity=0.960 Sum_probs=37.6
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~ 61 (165)
+++|+|+|+|+.+|+|+|+|+|++||+.||+||+.+|..+|+
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l~ 128 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQ 128 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHcC
Confidence 578999999943499999999999999999999999988764
No 17
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.91 E-value=1.1e-09 Score=78.49 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=35.1
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
..++|+|.|++++.++|+|||+|++||++||.+|+.++..
T Consensus 79 ~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~ 118 (123)
T 1wjm_A 79 RKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS 118 (123)
T ss_dssp SSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 4578999999855699999999999999999999987753
No 18
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=98.86 E-value=2.4e-09 Score=78.09 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=35.1
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
..++++|+|.|++.++|+|||+|++||++||.+|+.+|..
T Consensus 86 ~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 86 SSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4567999999855789999999999999999999998864
No 19
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=98.85 E-value=1.9e-09 Score=74.56 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=32.5
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ 55 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~ 55 (165)
..++++|.|+++++++|+|+|+|++|+.+||.+|+.+
T Consensus 70 ~~~~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 70 KKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp CSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred cCCccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 4567999999855699999999999999999999864
No 20
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=98.85 E-value=3.7e-09 Score=75.85 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=35.5
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
..++|+|.|+|+++++|+|||+|++||.+||.+|+.+|..
T Consensus 81 ~kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 81 TKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp SSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4567999999767899999999999999999999988753
No 21
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=74.03 Aligned_cols=36 Identities=31% Similarity=0.636 Sum_probs=33.3
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ 55 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~ 55 (165)
..+.++|.|++ ++|+|+|+|+|++|++.||.||+++
T Consensus 57 ~~~~~~F~i~~-~~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 57 DFDECRFDISV-NDSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp SSCSSEEEEEE-TTEEEEEECCSSCCTHHHHHHHHHH
T ss_pred cccceeEEEEe-CCeEEEEECCCHHHHHHHHHHHHhh
Confidence 56679999999 8999999999999999999999976
No 22
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.1e-09 Score=75.86 Aligned_cols=58 Identities=17% Similarity=0.369 Sum_probs=43.8
Q ss_pred CCCCCCCcc--------ccccccccc--CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAE--------IPIILVGTQ--DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 1 ~s~y~~~~~--------i~~~~~~~~--~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
|+||+...+ |++..+.+. .+++++|+|+++..|+|+|+|+|++|++.||.+|+.++..
T Consensus 38 L~Yyk~~~~~~~~~~g~I~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (120)
T 2d9x_A 38 LEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQH 105 (120)
T ss_dssp EEEESSGGGSSSCCSEEEECTTCCEECCSSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCccceEEcceEEEEecCCCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 467765543 444444442 4567999999833599999999999999999999987754
No 23
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=98.78 E-value=4e-09 Score=72.90 Aligned_cols=58 Identities=19% Similarity=0.420 Sum_probs=43.6
Q ss_pred CCCCCCCcc--------ccccccccc--CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAE--------IPIILVGTQ--DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 1 ~s~y~~~~~--------i~~~~~~~~--~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
|+||+...+ |++..+.+. .++.++|.|+++.+|+|+|+|+|++|++.||.+|+.++..
T Consensus 27 L~Yy~~~~~~~~~~~g~i~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 27 LSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKAS 94 (103)
T ss_dssp EEEESSCC---CCCSCEEEGGGCEEECCTTCSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred EEEEecCCcccCCcccEEEeeeeEEEEcCCCCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 467766542 444444442 4568999999944899999999999999999999987643
No 24
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.77 E-value=1.5e-08 Score=74.74 Aligned_cols=61 Identities=13% Similarity=0.297 Sum_probs=45.3
Q ss_pred CCCCCCCc-------cccccccccc----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773 1 MSHYRNAA-------EIPIILVGTQ----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61 (165)
Q Consensus 1 ~s~y~~~~-------~i~~~~~~~~----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~ 61 (165)
|.||+... .|++..+.+. ..++|+|+|+++..|+|+|+|++++|++.||.+|+.++.....
T Consensus 57 L~yy~~~~~~~~~~g~I~L~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~~~ 128 (150)
T 1wg7_A 57 LNFYKDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFE 128 (150)
T ss_dssp EEEESSSCCSSCCSEEECTTTCCEECCCCSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCcCcEEecccCEEEecCCCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhhhH
Confidence 35666554 2454444432 3567999999933599999999999999999999998876553
No 25
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=6.7e-09 Score=74.17 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=42.9
Q ss_pred CCCCCCCcc------ccccccccc---CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAE------IPIILVGTQ---DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 1 ~s~y~~~~~------i~~~~~~~~---~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
|.||+...+ |++..+.+. ..+.++|.|++ ++|+|+|+|++++|++.||.+|+.++..
T Consensus 40 L~Yy~~~~~~~~~g~I~L~~~~~~~~~~~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (119)
T 2dhk_A 40 LYYSRTAQDANPLDSIDLSSAVFDCKADAEEGIFEIKT-PSRVITLKAATKQAMLYWLQQLQMKRWE 105 (119)
T ss_dssp EEEESSTTCCSCSEEEEGGGCEEEECTTGGGCEEEEEC-SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcccccEEECCCCEEEecCCCCCCEEEEEe-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 457776554 333333321 34579999998 7999999999999999999999987754
No 26
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.73 E-value=8e-09 Score=72.26 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=33.8
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
..++|+|.|+++..|+|+|+|+|++|++.||.+|+.++.
T Consensus 63 ~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 63 PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred CCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 345799999994389999999999999999999997654
No 27
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.69 E-value=1.8e-08 Score=72.30 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=39.2
Q ss_pred cccccccccc-------CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773 9 EIPIILVGTQ-------DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56 (165)
Q Consensus 9 ~i~~~~~~~~-------~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i 56 (165)
.||+..+.+. .+++|+|+|+. +.++|+|+|+|++++++||.+|+.+.
T Consensus 52 ~I~L~g~~V~~~~~~~~~~~~~~Fki~~-~~~~y~f~A~s~e~~~~Wl~al~~A~ 105 (112)
T 2coc_A 52 TIPLPSCKLSVPDPEERLDSGHVWKLQW-AKQSWYLSASSAELQQQWLETLSTAA 105 (112)
T ss_dssp EECGGGCEEECCCSSSCCSSSEEEEEEE-TTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEecCcccccCCCCEEEEec-CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 3677666654 34679999997 88999999999999999999998764
No 28
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=98.68 E-value=1.8e-08 Score=70.61 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=32.0
Q ss_pred cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56 (165)
Q Consensus 22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i 56 (165)
+++|.|+++.+|+|+|+|+|++|++.||.+|+.+.
T Consensus 76 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 76 DCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp GGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 68999998558999999999999999999999875
No 29
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.68 E-value=2.6e-08 Score=69.81 Aligned_cols=40 Identities=30% Similarity=0.475 Sum_probs=34.7
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
..+.|+|+|+++..|+|+|+|+|++|++.||.+|+.++..
T Consensus 63 ~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 63 GKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp CCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 4456899999944699999999999999999999988754
No 30
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=98.68 E-value=1.8e-08 Score=75.80 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=34.4
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
..++|+|.|++ ++++|+|+|++++|++.||.+|+.++.
T Consensus 74 ~~~~~~F~I~t-~~r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 74 TKRKNVFRLTT-SDCECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp CSCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCCCCEEEEEe-CCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 45679999998 789999999999999999999998764
No 31
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=98.67 E-value=2.1e-08 Score=71.67 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=35.7
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.+++++|.|++ ++|+|+|+|+|++|++.||.+|+.++..
T Consensus 75 ~~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 75 QERVNCFCLVF-PFRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp SSSSSEEEEEE-TTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEe-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 45679999999 8999999999999999999999998876
No 32
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.67 E-value=1.5e-08 Score=71.41 Aligned_cols=56 Identities=25% Similarity=0.542 Sum_probs=41.6
Q ss_pred CCCCCCCcc------ccccccc-ccCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAE------IPIILVG-TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 1 ~s~y~~~~~------i~~~~~~-~~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
|.||+...+ |++.... +....+++|.|++ ++|+|+|+|++++|++.||.+|+.++.
T Consensus 37 L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~~l~~~~~ 99 (115)
T 2cod_A 37 ISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFEVVT-TQRTFVFRVEKEEERNDWISILLNALK 99 (115)
T ss_dssp EEEEESSCCSSCCCEEETTTEEEEEEETTTEEEEEE-SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcccCCEEECCcceEEEeCCCCEEEEEe-CCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 356665543 3443322 2233479999998 899999999999999999999998774
No 33
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.67 E-value=1.7e-08 Score=74.16 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=41.3
Q ss_pred CCCCCCCc------cccccccccc----CCCcceEEEEeCCC-----------------------CeEEEEeCCHHHHHH
Q psy17773 1 MSHYRNAA------EIPIILVGTQ----DSDSFELLIVSLDN-----------------------KQWQFEAANSEERDD 47 (165)
Q Consensus 1 ~s~y~~~~------~i~~~~~~~~----~~~~~~F~ivt~~~-----------------------rt~~fqa~se~E~~~ 47 (165)
|.||++.. .|++..+.+. ..++|||+|+++.. ++|+|+|+|++|+++
T Consensus 35 L~yyk~~~~~~p~G~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~ 114 (130)
T 1v88_A 35 LLIYKTQKNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRC 114 (130)
T ss_dssp EEEESCSSSCCCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHH
T ss_pred EEEECCCCCCCceEEEEcCCCEEEECCCCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHH
Confidence 45777665 3455555443 23459999998433 349999999999999
Q ss_pred HHHHHHHHHH
Q psy17773 48 WIAAIQQQIL 57 (165)
Q Consensus 48 Wi~ai~~~i~ 57 (165)
||+||+.++.
T Consensus 115 Wi~ai~~a~~ 124 (130)
T 1v88_A 115 WMDALELALK 124 (130)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 34
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.67 E-value=1.7e-08 Score=70.45 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=32.5
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
++++|.|+++..++|+|+|+|++|++.||.+|+.++.
T Consensus 67 ~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 67 ESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 4699999984467899999999999999999998764
No 35
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=98.66 E-value=2.5e-08 Score=69.16 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=32.3
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i 56 (165)
+.++|.|+++..++|+|+|+|++|++.||.+|+.++
T Consensus 73 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 73 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 679999999446789999999999999999999875
No 36
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.65 E-value=2.5e-08 Score=75.10 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=32.9
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
+.++|+|+| ++|+|+|+|+|++||++||.+|+..+.
T Consensus 78 ~~~~F~I~t-~~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 78 NCAKFTLVL-PKEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp CCCEEEEEC-SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEc-CCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 468999999 899999999999999999999998765
No 37
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=98.63 E-value=3.4e-08 Score=70.54 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=44.6
Q ss_pred CCCCCCCcc------ccccccccc--------CCCcceEEEEe---CCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773 1 MSHYRNAAE------IPIILVGTQ--------DSDSFELLIVS---LDNKQWQFEAANSEERDDWIAAIQQQILSS 59 (165)
Q Consensus 1 ~s~y~~~~~------i~~~~~~~~--------~~~~~~F~ivt---~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~ 59 (165)
|.||+...+ ||+....+. ..++++|+|++ ++.|+|+|+|+|++|++.||.+|+.++...
T Consensus 37 L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~ 112 (125)
T 1unq_A 37 FIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL 112 (125)
T ss_dssp EEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCCceeEccceeEEeeeecccccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 356766553 566554431 35679999996 257899999999999999999999888653
No 38
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=98.62 E-value=3.1e-08 Score=71.04 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=33.1
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
+.++|+|+++..++|+|+|+|++|++.||.+|+.++.
T Consensus 84 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~ 120 (129)
T 1x05_A 84 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR 120 (129)
T ss_dssp SCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6799999994468899999999999999999998775
No 39
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.62 E-value=4.7e-08 Score=71.89 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=34.0
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
..++|+|++++ ++++|+|+|+|++||+.||.||..++.
T Consensus 73 ~~~k~~F~~v~-~~~ty~~~Adseee~~~WikAi~~A~~ 110 (126)
T 1wi1_A 73 EGGRAFFNAVK-EGDTVIFASDDEQDRILWVQAMYRATG 110 (126)
T ss_dssp CSCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ccCceEEEEec-CCceEEEEcCCHHHHHHHHHHHHHHhc
Confidence 34679999998 788999999999999999999998774
No 40
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=98.62 E-value=4e-08 Score=70.09 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=33.3
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.++|+|+|+++..|+|+|+|+|++|++.||.+|+.++.
T Consensus 82 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 82 NRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp SSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 56799999984469999999999999999999987653
No 41
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=98.62 E-value=5.4e-08 Score=69.12 Aligned_cols=41 Identities=12% Similarity=0.294 Sum_probs=36.1
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS 59 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~ 59 (165)
..++++|+|++++.++|+|+|+|++||++||.+|+.++...
T Consensus 63 ~~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~~ 103 (112)
T 3cxb_B 63 TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKG 103 (112)
T ss_dssp SSCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence 45679999997578999999999999999999999887653
No 42
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.60 E-value=5.4e-08 Score=68.12 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=34.4
Q ss_pred CCcceEEEEeC-------CCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSL-------DNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 20 ~~~~~F~ivt~-------~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.++|+|+|+++ +.|+|+|+|+|++|++.||.+|+.++..
T Consensus 68 ~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 68 AGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp CCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred CCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence 45799999983 7899999999999999999999988753
No 43
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=5.4e-08 Score=68.87 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=33.2
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i 56 (165)
.++|+|+|++++.|+|+|+|+|++|++.||.+|+.++
T Consensus 83 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 83 SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp SSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 4579999987568999999999999999999999876
No 44
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=98.60 E-value=3.2e-08 Score=84.63 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=41.1
Q ss_pred cccccccccc----CCCcceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773 9 EIPIILVGTQ----DSDSFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILSSL 60 (165)
Q Consensus 9 ~i~~~~~~~~----~~~~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~~~l 60 (165)
.|++..+.++ .+++|||+|+|+. .|+|+|||+|++||..||.+|++++..+.
T Consensus 345 ~~~l~~~~v~~~~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~~ 401 (407)
T 4h8s_A 345 IQDLDNCSVMAVDCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQIY 401 (407)
T ss_dssp CBCSSCCEEEEECCTTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC-
T ss_pred EEECCceEEEECCCCCCCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHHhh
Confidence 3456566553 6788999999943 36999999999999999999999886543
No 45
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=4.2e-08 Score=68.81 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.1
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
..++|+|+|++++.|+|+|+|+|++|++.||.+|+.++.
T Consensus 71 ~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 109 (117)
T 2d9y_A 71 ISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAAR 109 (117)
T ss_dssp CCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 356799999875679999999999999999999998764
No 46
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.59 E-value=4.8e-08 Score=71.22 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=33.2
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.+++|||.|.+ +.|+|+|+|+|++|+++||.+|+.++.
T Consensus 83 ~~~~~~F~i~t-~~r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 83 PKTPFCFVINA-LSQRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp CSCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEEEEC-CCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 34569998887 899999999999999999999987653
No 47
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=98.58 E-value=5.5e-08 Score=68.91 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=33.7
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.+.|+|+|+++..++|+|+|+|++|++.||.+|+.++..
T Consensus 72 ~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~ 110 (123)
T 1upq_A 72 GRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRA 110 (123)
T ss_dssp SSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred CCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 367999999844599999999999999999999988753
No 48
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.56 E-value=9.5e-08 Score=69.29 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=34.0
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
..++++|+|++++.|+|+|+|+|++|++.||.+|+.++.
T Consensus 76 ~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 76 RSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp CCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 345799999995569999999999999999999998764
No 49
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=98.56 E-value=7.3e-08 Score=68.42 Aligned_cols=58 Identities=14% Similarity=0.322 Sum_probs=42.2
Q ss_pred CCCCCCCc------cccccccccc----CCCcceEEEEeCC---------------------CCeEEEEeCCHHHHHHHH
Q psy17773 1 MSHYRNAA------EIPIILVGTQ----DSDSFELLIVSLD---------------------NKQWQFEAANSEERDDWI 49 (165)
Q Consensus 1 ~s~y~~~~------~i~~~~~~~~----~~~~~~F~ivt~~---------------------~rt~~fqa~se~E~~~Wi 49 (165)
|.||+.+. .|++..+.+. ..++++|.|+++. .|+|+|+|+|++|++.||
T Consensus 33 L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi 112 (127)
T 1fgy_A 33 LYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWM 112 (127)
T ss_dssp EEEESSTTCSSCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHH
T ss_pred EEEeCCCCCCCcceEEECCceEEEEccCCCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHH
Confidence 45676544 2344433332 4567999998732 379999999999999999
Q ss_pred HHHHHHHHH
Q psy17773 50 AAIQQQILS 58 (165)
Q Consensus 50 ~ai~~~i~~ 58 (165)
.+|+.++..
T Consensus 113 ~al~~~i~~ 121 (127)
T 1fgy_A 113 KSIKASISR 121 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999988753
No 50
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=98.53 E-value=3.7e-08 Score=83.63 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=35.1
Q ss_pred CCCcceEEEEeCCC--CeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDN--KQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 19 ~~~~~~F~ivt~~~--rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.+++|||+|+| |+ |+|+|||+|++||+.||.||+.++..
T Consensus 336 ~~r~~~F~i~t-~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~ 376 (385)
T 2q13_A 336 EDRRYCFQITS-FDGKKSSILQAESKKDHEEWICTINNISKQ 376 (385)
T ss_dssp TTCSSEEEEEC-TTSCBCCCEECSSHHHHHHHHHHHHHHHTT
T ss_pred cCCCceEEEEe-CCCCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56779999999 66 99999999999999999999987754
No 51
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=98.53 E-value=1.1e-07 Score=72.11 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=34.2
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.+.++|.|++ ++|+|+|+|+|++|+++||++|++.|..
T Consensus 85 ~~~~~f~i~t-~~rt~~l~A~s~~e~~~Wi~aL~~~i~~ 122 (164)
T 2lul_A 85 QNKYPFQVVH-DANTLYIFAPSPQSRDLWVKKLKEEIKN 122 (164)
T ss_dssp SSCSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred ccceeEEEec-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 4568999999 8999999999999999999999987754
No 52
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.51 E-value=7.7e-08 Score=68.82 Aligned_cols=38 Identities=21% Similarity=0.467 Sum_probs=33.3
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
+.++|.|+++..|+|+|+|+|++|++.||.+|+.++..
T Consensus 88 ~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 88 QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp CSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred CCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 57999999944588999999999999999999987753
No 53
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=98.51 E-value=1.3e-07 Score=68.30 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
..++++|.|.++++++|.|||++++||..||.+|+.+|.
T Consensus 85 ~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 85 SSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 346799999986678999999999999999999999874
No 54
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=98.50 E-value=1.1e-07 Score=75.74 Aligned_cols=57 Identities=14% Similarity=0.302 Sum_probs=45.3
Q ss_pred CCCCCCCcc------ccccccccc---CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAE------IPIILVGTQ---DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 1 ~s~y~~~~~------i~~~~~~~~---~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
|.||+...+ |++..+.+. ..++++|+|+| ++|+|+|+|+|++|++.||.+|+.++..
T Consensus 91 L~Yyk~~~~~~~~g~I~L~~~~~v~~~~~k~~~F~I~t-~~r~~~l~A~s~~e~~~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 91 LMYFENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIM-ADRTFHLIAESPEDASQWFSVLSQVHSS 156 (228)
T ss_dssp EEEESSTTCCSEEEEEEGGGCSEEEEETTTTSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCcceeEEEEcCCCEEeccCCCCCcEEEEEc-CCcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 467777653 455444432 56789999998 8999999999999999999999998864
No 55
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=98.49 E-value=1.1e-07 Score=77.49 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=35.7
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS 59 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~ 59 (165)
.++|+|+|+++++++|+|+|+|++|+++||.+|+.++...
T Consensus 87 kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~ 126 (263)
T 3a8p_A 87 KKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASL 126 (263)
T ss_dssp SCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 4689999998668999999999999999999999887654
No 56
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=98.47 E-value=1.3e-07 Score=69.60 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=32.5
Q ss_pred cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.++|.|+++..|+|+|+|+|++|++.||.+|+.++..
T Consensus 84 ~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 84 DCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp GGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred ccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 5999999933499999999999999999999988764
No 57
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=98.47 E-value=1.8e-07 Score=64.31 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=33.8
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.++++|.|+++..|+|+|+|+|++|++.||.+|+.++.+
T Consensus 68 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 68 KKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp GGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 346999999833499999999999999999999998764
No 58
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=98.46 E-value=2.6e-07 Score=65.47 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=34.9
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.+.++|+|++ ++|+|+|+|+|++|++.||.+|+.++..
T Consensus 75 ~~~~~F~i~~-~~r~~~l~a~s~~e~~~W~~al~~~i~~ 112 (125)
T 1eaz_A 75 MRDNLFEIVT-TSRTFYVQADSPEEMHSWIKAVSGAIVA 112 (125)
T ss_dssp TCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCEEEEEe-CCcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 4689999998 8999999999999999999999998865
No 59
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=4.1e-07 Score=63.50 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=34.6
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
..++++|.|++ ++|+|+|+|+|++|++.||.+|+.++..
T Consensus 66 ~~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 66 DGKKCLFLVKC-FDKTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp TTCCSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEe-CCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 34568999998 8999999999999999999999987754
No 60
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.43 E-value=2e-07 Score=65.33 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.+.++|.|++ +.|+|+|+|+|++|++.||.+|+.++.
T Consensus 75 ~~~~~F~i~~-~~r~~~l~a~s~~e~~~Wi~al~~~i~ 111 (117)
T 1v5u_A 75 DEKAFFDVKT-TRRVYNFCAQDVPSAQQWVDRIQSCLS 111 (117)
T ss_dssp CTTTCEEEEE-SSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEEC-CCceEEEECCCHHHHHHHHHHHHHHhc
Confidence 3458999998 899999999999999999999998764
No 61
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=98.43 E-value=2.9e-07 Score=70.20 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.6
Q ss_pred ceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 23 FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 23 ~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
|+|+|+| ++|+|+|+|+|++|+++||++|+.++.
T Consensus 99 ~~F~I~t-~~rt~yl~A~s~~E~~eWi~aI~~~i~ 132 (169)
T 1btk_A 99 YPFQVVY-DEGPLYVFSPTEELRKRWIHQLKNVIR 132 (169)
T ss_dssp EEEEEEE-TTCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred ccEEEEe-CCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 8999999 889999999999999999999987664
No 62
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=98.42 E-value=1e-07 Score=68.83 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=32.9
Q ss_pred CCcceEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLD--NKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 20 ~~~~~F~ivt~~--~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.++|+|+|+++. .++|+|+|+|++|+++||.||+.++..
T Consensus 80 ~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 80 QKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWK 120 (124)
T ss_dssp TBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHh
Confidence 467999999843 478999999999999999999987754
No 63
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=98.41 E-value=2e-07 Score=67.01 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=32.8
Q ss_pred CCcceEEEEeC-CC------------------CeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSL-DN------------------KQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 20 ~~~~~F~ivt~-~~------------------rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.++|+|+|++. |. |+|+|+|+|++|++.||.+|+.++..
T Consensus 72 ~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~ 129 (134)
T 2y7b_A 72 ARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD 129 (134)
T ss_dssp CCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 46799999873 22 47999999999999999999988754
No 64
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=98.25 E-value=5.8e-07 Score=73.31 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
..++|+|.|+| ++|+|+|+|+|++|++.||.+|+.++..
T Consensus 75 ~~~~~~F~I~t-~~rty~l~A~se~e~~~Wi~aL~~~~~~ 113 (264)
T 1qqg_A 75 SKNKHLVALYT-RDEHFAIAADSEAEQDSWYQALLQLHNR 113 (264)
T ss_dssp SSCSSEEEEEE-SSCEEEEECSSHHHHHHHHHHHHHHC--
T ss_pred CCCCcEEEEEE-CCEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 44579999999 7999999999999999999999987754
No 65
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=98.22 E-value=1.1e-06 Score=74.11 Aligned_cols=65 Identities=14% Similarity=0.267 Sum_probs=46.3
Q ss_pred CCCCCCCc------cccccccccc----CCCcceEEEEeCC---------------------CCeEEEEeCCHHHHHHHH
Q psy17773 1 MSHYRNAA------EIPIILVGTQ----DSDSFELLIVSLD---------------------NKQWQFEAANSEERDDWI 49 (165)
Q Consensus 1 ~s~y~~~~------~i~~~~~~~~----~~~~~~F~ivt~~---------------------~rt~~fqa~se~E~~~Wi 49 (165)
|.||+.+. .|++..+.+. ..+++||+|.++. .|+|+|+|+|++|++.||
T Consensus 241 L~Yyk~~~~~~p~G~I~L~~~~v~~~~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi 320 (347)
T 2r09_A 241 LYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWM 320 (347)
T ss_dssp EEEESSTTCSSCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHH
T ss_pred EEEEcCCCccCCcEEEEcCCeEEEEccCCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHH
Confidence 45776644 2444444432 4678999999842 489999999999999999
Q ss_pred HHHHHHHHHhHHHHHH
Q psy17773 50 AAIQQQILSSLQTASL 65 (165)
Q Consensus 50 ~ai~~~i~~~l~~~~l 65 (165)
.+|+.++...-..+.+
T Consensus 321 ~aI~~ai~~~~~~~~l 336 (347)
T 2r09_A 321 KSIKASISRDPFYDML 336 (347)
T ss_dssp HHHHHHHHCCHHHHHH
T ss_pred HHHHHHHhcCCCHHHH
Confidence 9999988754333333
No 66
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=98.18 E-value=2.5e-06 Score=62.59 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=39.7
Q ss_pred cccccccccc----CCCcceEEEEeC-CCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 9 EIPIILVGTQ----DSDSFELLIVSL-DNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 9 ~i~~~~~~~~----~~~~~~F~ivt~-~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
-||+.-+.+. ..++++|+|.++ .+..|.|||+|++++..|+.+|+.++..
T Consensus 59 ~i~L~g~~V~~~e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~ 113 (126)
T 2dtc_A 59 KVSIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKS 113 (126)
T ss_dssp EEECTTCEEECCCCTTSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTS
T ss_pred eEEeCCCEEEecCCCCCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence 3455555553 346799999985 4899999999999999999999988753
No 67
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=98.16 E-value=1.2e-06 Score=74.98 Aligned_cols=101 Identities=15% Similarity=0.335 Sum_probs=35.6
Q ss_pred Cccccccccccc----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHHHHHH---------HH-----H
Q psy17773 7 AAEIPIILVGTQ----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASL---------QS-----I 68 (165)
Q Consensus 7 ~~~i~~~~~~~~----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~~~~l---------~~-----l 68 (165)
...||+....+. .+.+|.|.|.+ +.++|.|+|.|++|++.|+++|+++|......+.. +. +
T Consensus 284 k~~i~L~~l~v~~~~~~~~~~~f~i~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~e~~~~~~~~~f~~~~e~~~~~~~~~ 362 (434)
T 3mpx_A 284 KNTLAVANMKVSRPVMEKVPYALKIET-SESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGVSL 362 (434)
T ss_dssp EEEEEC-----CCCCCTTSCSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHC---------------------------
T ss_pred EEEEEcCCcEEEecCCCCCCeeEEEec-CCeEEEEecCCHHHHHHHHHHHHHHHHHHHhhhcccccCCccchhhcccCcc
Confidence 334454444442 33479999987 88999999999999999999999999765331110 00 0
Q ss_pred ------HhhCCCCCCCCCCCCCCC----CeeeecccceeeeccccccccC
Q psy17773 69 ------RSRVPGNLTCADCAEAGP----TWASLNLGLLLCIQCCGVHRCL 108 (165)
Q Consensus 69 ------~~~~~~N~~CaDCg~~~p----~w~s~n~Gv~lC~~Cs~iHR~l 108 (165)
.........|..|+.+-. ..-+-+-|-.+|..|+.-+..+
T Consensus 363 ~~~~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~ 412 (434)
T 3mpx_A 363 GERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPL 412 (434)
T ss_dssp --------------------------------------------------
T ss_pred ccCCCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeC
Confidence 000223457999998643 2335567889999999855444
No 68
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=98.13 E-value=2.7e-06 Score=66.98 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=33.5
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
+.|+|.|+++..|+|+|+|++++|++.||.+|+.+|..
T Consensus 172 k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 172 KDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp GGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 46999999943599999999999999999999988753
No 69
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=98.13 E-value=2.3e-06 Score=62.66 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=39.9
Q ss_pred CCCCCCCcc------ccccccccc------CCCcceEEEEeCCCC-------eEEEEeCCHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAE------IPIILVGTQ------DSDSFELLIVSLDNK-------QWQFEAANSEERDDWIAAIQQ 54 (165)
Q Consensus 1 ~s~y~~~~~------i~~~~~~~~------~~~~~~F~ivt~~~r-------t~~fqa~se~E~~~Wi~ai~~ 54 (165)
|+||+...+ ||+....+. ..++|+|+|.++.+| +|.|.|+|.+|+++|+++|..
T Consensus 42 L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~r 114 (125)
T 1dyn_A 42 LSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR 114 (125)
T ss_dssp EEEESSTTCSCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHH
T ss_pred eeeecCCcccccceEEECCCceEeccCCCCCCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHh
Confidence 467766553 455444442 367799999984444 999999999999999999944
No 70
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=98.08 E-value=3.1e-06 Score=61.21 Aligned_cols=36 Identities=14% Similarity=0.395 Sum_probs=30.2
Q ss_pred CcceEEEEeCC------CCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLD------NKQWQFEAANSEERDDWIAAIQQQI 56 (165)
Q Consensus 21 ~~~~F~ivt~~------~rt~~fqa~se~E~~~Wi~ai~~~i 56 (165)
+.+.|+|.+.+ +++|+|+|+|++||++||.+|+.+.
T Consensus 76 ~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 76 SDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp -CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 67899998743 2599999999999999999998764
No 71
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.98 E-value=7.5e-06 Score=70.00 Aligned_cols=37 Identities=19% Similarity=0.532 Sum_probs=34.2
Q ss_pred cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS 59 (165)
Q Consensus 22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~ 59 (165)
+|+|+|+| ++|+|+|+|+|++|+++||.||+.+|...
T Consensus 338 ~~~F~I~t-~~rty~l~A~s~~e~~~Wi~aL~~~i~~p 374 (386)
T 3lju_X 338 PHGITIVT-PDRKFLFACETESDQREWVAAFQKAVDRP 374 (386)
T ss_dssp CEEEEEEC-SSCEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred CcEEEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 59999999 88999999999999999999999988654
No 72
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=97.94 E-value=6.3e-06 Score=67.91 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=35.0
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
..++++|.|.++++++|.|||++++||..||.+|..++.
T Consensus 86 ~kKk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 86 PKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp SSSCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 456789999987789999999999999999999998775
No 73
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=59.67 Aligned_cols=55 Identities=11% Similarity=0.254 Sum_probs=39.9
Q ss_pred CCCCCCCcc--------ccccccccc-----CCCcceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAE--------IPIILVGTQ-----DSDSFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQ 55 (165)
Q Consensus 1 ~s~y~~~~~--------i~~~~~~~~-----~~~~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~ 55 (165)
|+||+++.+ |++..|.+. ...+|.|.+..| +.++|.|.|+||+++..||+|++.+
T Consensus 40 L~YyK~kee~~~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlA 110 (137)
T 2ys3_A 40 LSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLA 110 (137)
T ss_dssp EEEESSTTTTTSCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEECCchhccCCCceEEECCCCEEeccccccCCceEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHh
Confidence 468866666 333334443 256788877763 2399999999999999999999864
No 74
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=97.75 E-value=3e-05 Score=55.71 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=31.8
Q ss_pred CcceEEEEe-----CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVS-----LDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 21 ~~~~F~ivt-----~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.++.|+|++ ++.++++|.|+|++|++.||.+|+..|.
T Consensus 74 ~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 74 IPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp GGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 357899987 2469999999999999999999998764
No 75
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=97.71 E-value=4.4e-05 Score=57.53 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=33.6
Q ss_pred CCCcceEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLD--NKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 19 ~~~~~~F~ivt~~--~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.++.|.|.|.++. .++|.|.|+|.+|+.+||.+|+.++..
T Consensus 108 ~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~ 149 (150)
T 2fjl_A 108 NNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT 149 (150)
T ss_dssp SSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4578999998732 459999999999999999999987653
No 76
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=97.64 E-value=5.9e-05 Score=60.66 Aligned_cols=38 Identities=5% Similarity=0.114 Sum_probs=31.8
Q ss_pred CCCcceEEEEeCC-----CCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLD-----NKQWQFEAANSEERDDWIAAIQQQI 56 (165)
Q Consensus 19 ~~~~~~F~ivt~~-----~rt~~fqa~se~E~~~Wi~ai~~~i 56 (165)
.+++|||.|+++. .++|+|+|+|++|+..||.||+.+.
T Consensus 233 ~~~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 233 APTDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp CSSSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 4567999999732 2579999999999999999998765
No 77
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.63 E-value=5.3e-05 Score=55.88 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=46.0
Q ss_pred CCCCCCCccccccccccc-----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAEIPIILVGTQ-----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 1 ~s~y~~~~~i~~~~~~~~-----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
++.|+....+|+.--.+. ++.+++|+|..+..+++.+.|.|.+|++.||++|+.+|..
T Consensus 65 ~~~f~~kgklPL~g~~V~~~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~ 127 (132)
T 1v61_A 65 MSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKS 127 (132)
T ss_dssp SSCCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEEecceeEEEeccccccCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 356777778888766664 3457999998633489999999999999999999988753
No 78
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=97.62 E-value=0.00011 Score=52.56 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=34.6
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL 60 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l 60 (165)
-++.|.|.+ +.++|.|+|++++|+.+||++|++++.+.+
T Consensus 72 ~~n~f~i~~-~~~s~~~~aes~~eK~~Wl~~~~~a~~~~~ 110 (113)
T 1zc3_B 72 MKDMFKLLM-FPESRIFQAENAKIKREWLEVLEETKRALS 110 (113)
T ss_dssp BSSEEEEEE-TTEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEe-CCceEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence 368999998 789999999999999999999999886543
No 79
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.52 E-value=5e-05 Score=60.11 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=32.8
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ 55 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~ 55 (165)
..++..|.|+| ++|+|+|+|++++|++.||.+||++
T Consensus 192 ~~~~~~f~iit-~~r~~~~~a~s~~e~~~Wi~~lq~~ 227 (228)
T 3tfm_A 192 PDRPNSFVIIT-ANRVLHCNADTPEEMHHWITLLQRS 227 (228)
T ss_dssp SSCTTEEEEEE-TTEEEEEECSSHHHHHHHHHHHCSC
T ss_pred CCCCCcEEEEe-CCceEEEEcCCHHHHHHHHHHHhhc
Confidence 56778999999 8999999999999999999999864
No 80
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00029 Score=51.51 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=29.3
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~ 54 (165)
.+.+.|.|+| ++|+|.|.|+++ |+.+||.+|..
T Consensus 86 k~~~aF~l~T-~er~~~laAe~~-E~~~Wi~~ic~ 118 (127)
T 2d9w_A 86 RDTSAFFLET-KERLYLLAAPAA-ERGDWVQAICL 118 (127)
T ss_dssp SSCEEEEEEE-SSCEEEEEECHH-HHHHHHHHHHH
T ss_pred CcceEEEEEe-CCcEEEEEeCcH-HHHHHHHHHHH
Confidence 3558999999 899999999975 89999999975
No 81
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=97.25 E-value=0.00097 Score=49.59 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=42.6
Q ss_pred CCCCCccccccccccc----CCCcceEEEEeCC-C----CeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773 3 HYRNAAEIPIILVGTQ----DSDSFELLIVSLD-N----KQWQFEAANSEERDDWIAAIQQQILSSL 60 (165)
Q Consensus 3 ~y~~~~~i~~~~~~~~----~~~~~~F~ivt~~-~----rt~~fqa~se~E~~~Wi~ai~~~i~~~l 60 (165)
.|+....+|+..-.+. ..-.|+|.|.+.. + ++..|+|.|+.||..||++|+.+|.+..
T Consensus 59 ~Y~vr~~~~L~gm~V~~~e~e~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~ 125 (140)
T 3qwm_A 59 TYSFRQSFSLYGMQVLLFENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQ 125 (140)
T ss_dssp CCCCEEEECCTTEEEEEECCSSCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeecceEEEcccCCCCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444332 3347899999732 2 6799999999999999999999997654
No 82
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=97.18 E-value=0.00038 Score=52.38 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=35.8
Q ss_pred cccccccc-ccCCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 9 EIPIILVG-TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 9 ~i~~~~~~-~~~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
+||+.... +.......|.|.| |+|||+|.+. +.++++|++||+.++..
T Consensus 92 eIpls~~l~ve~k~~~~F~I~T-p~RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 92 EIPWSQELRPEAKNFKTFFVHT-PNRTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp EECCCTTCEEEESSSSEEEEEE-TTEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred eEecCCCeeEEEcCCCEEEEEC-CCceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 45666432 2222234899999 8899999996 99999999999987754
No 83
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=96.98 E-value=0.001 Score=56.31 Aligned_cols=82 Identities=11% Similarity=0.199 Sum_probs=50.8
Q ss_pred cceEEEEeC-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhHHHHHHHHH----HhhCCCCCCCCCCCCCC-----CCeeee
Q psy17773 22 SFELLIVSL-DNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSI----RSRVPGNLTCADCAEAG-----PTWASL 91 (165)
Q Consensus 22 ~~~F~ivt~-~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~~~~l~~l----~~~~~~N~~CaDCg~~~-----p~w~s~ 91 (165)
.+.|.|++. +.++|.|+|.|++|++.|+++|++++........-..- .........|.-|+..- -.+-+-
T Consensus 299 ~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~ 378 (406)
T 2vrw_B 299 SHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCY 378 (406)
T ss_dssp CEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHHHSCTTTTGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEET
T ss_pred ceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhhhhhccccCCCCCCccccCCCCCCCccccchhceeCCCCCCCC
Confidence 478999863 46799999999999999999999887653311100000 00133456788888753 223344
Q ss_pred cccceeeecccc
Q psy17773 92 NLGLLLCIQCCG 103 (165)
Q Consensus 92 n~Gv~lC~~Cs~ 103 (165)
..|..+|..|+.
T Consensus 379 ~C~~~~h~~C~~ 390 (406)
T 2vrw_B 379 RCRAPAHKECLG 390 (406)
T ss_dssp TTCCEECGGGGG
T ss_pred CCcCccchhhhh
Confidence 445555555544
No 84
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=96.81 E-value=0.002 Score=53.63 Aligned_cols=52 Identities=12% Similarity=0.335 Sum_probs=38.2
Q ss_pred Cccccccccccc--CCCcceEEEEeC----CCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 7 AAEIPIILVGTQ--DSDSFELLIVSL----DNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 7 ~~~i~~~~~~~~--~~~~~~F~ivt~----~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
...||+....+. .+++..|.|++. +.++|.|+|.|++|+..|+++|+++|..
T Consensus 310 ~~~i~l~~~~v~~~~~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 310 SPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp CSEEEGGGEEEEECSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCceEccceeeecccCCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 344555444332 345678888863 2579999999999999999999998865
No 85
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=96.42 E-value=0.0055 Score=49.79 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=38.6
Q ss_pred cccccccccc------CCCcceEEEEeCCCC-eEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 9 EIPIILVGTQ------DSDSFELLIVSLDNK-QWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 9 ~i~~~~~~~~------~~~~~~F~ivt~~~r-t~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.||+.++-+. +.+.++|+|.++.++ +..+.|.++++...|+.+|+.+|.
T Consensus 207 ~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 207 HVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp EEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred ccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 3455555442 557899999996555 689999999999999999998773
No 86
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=96.40 E-value=0.0028 Score=56.40 Aligned_cols=82 Identities=13% Similarity=0.257 Sum_probs=49.9
Q ss_pred cceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHhhCCCCCCCCCCCCCCCCeeeecccc
Q psy17773 22 SFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQS-----IRSRVPGNLTCADCAEAGPTWASLNLGL 95 (165)
Q Consensus 22 ~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~~~~l~~-----l~~~~~~N~~CaDCg~~~p~w~s~n~Gv 95 (165)
++.|.|++.. .++|.|+|.|++|++.|+++|+.++........... ... ......|.-|+..- |. +..--
T Consensus 471 ~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~~~~~~~~~H~F~~~~-~~~~t~C~~C~~~l--~g-l~~qg 546 (587)
T 3ky9_A 471 SHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHDFQMFS-FEETTSCKACQMLL--RG-TFYQG 546 (587)
T ss_dssp CEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHHHHSCTTTTGGGCCEEEEC-CSSCCBCTTTCSBC--CS-SSCCE
T ss_pred cceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhhhccccccccCCceeEEe-CCCCcccccccccc--cc-cccCC
Confidence 3789999832 289999999999999999999998865332110000 001 33456799998753 22 22234
Q ss_pred eeeeccc-ccccc
Q psy17773 96 LLCIQCC-GVHRC 107 (165)
Q Consensus 96 ~lC~~Cs-~iHR~ 107 (165)
+.|..|. .+|+.
T Consensus 547 ~~C~~C~~~vHk~ 559 (587)
T 3ky9_A 547 YRCHRCRASAHKE 559 (587)
T ss_dssp EEETTTCCEECSG
T ss_pred cCCCCCCCccchh
Confidence 5677775 45654
No 87
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=96.35 E-value=0.0032 Score=51.38 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=33.9
Q ss_pred CCCcceEEEEeC----CCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773 19 DSDSFELLIVSL----DNKQWQFEAANSEERDDWIAAIQQQILSS 59 (165)
Q Consensus 19 ~~~~~~F~ivt~----~~rt~~fqa~se~E~~~Wi~ai~~~i~~~ 59 (165)
+.+++.|.|.+. +.++|.|+|.|++|++.|+++|+.+|..+
T Consensus 266 ~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~ 310 (311)
T 1nty_A 266 EGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER 310 (311)
T ss_dssp TTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 345678998862 35789999999999999999999988753
No 88
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=96.25 E-value=0.0046 Score=51.46 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=34.7
Q ss_pred CCcceEEEEeC-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773 20 SDSFELLIVSL-DNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61 (165)
Q Consensus 20 ~~~~~F~ivt~-~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~ 61 (165)
+.++.|+|... +.++|.|+|.|++|++.|+++|+.++.....
T Consensus 287 ~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~ 329 (353)
T 1kz7_A 287 GDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ 329 (353)
T ss_dssp TBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 45688999862 3578999999999999999999998876543
No 89
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=96.22 E-value=0.0068 Score=51.28 Aligned_cols=50 Identities=12% Similarity=0.347 Sum_probs=36.9
Q ss_pred cccccccccc--CCCcceEEEEeCC----CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 9 EIPIILVGTQ--DSDSFELLIVSLD----NKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 9 ~i~~~~~~~~--~~~~~~F~ivt~~----~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.|++....+. .+....|.|++.. .++|.|+|.|.+|++.||++|++++..
T Consensus 354 ~i~l~~~~v~~~~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~ 409 (418)
T 3t06_A 354 VLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 409 (418)
T ss_dssp EEEGGGEEEEECSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ceechhceeccccccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 3444433333 3456778888732 379999999999999999999988864
No 90
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=96.21 E-value=0.0036 Score=51.86 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=31.8
Q ss_pred cceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 22 ~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
++.|.|.++..++|.|+|.|++|+..|+++|+.+..+
T Consensus 314 ~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~~ 350 (354)
T 1dbh_A 314 KHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYR 350 (354)
T ss_dssp CSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred CccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 5899998733589999999999999999999987653
No 91
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=96.04 E-value=0.0098 Score=49.67 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=31.0
Q ss_pred eEEEEe-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773 24 ELLIVS-------LDNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61 (165)
Q Consensus 24 ~F~ivt-------~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~ 61 (165)
-|+|+. .|.++|.|+|.|++|+..|+++|++++....+
T Consensus 326 ~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~~~ 370 (377)
T 1foe_A 326 VCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHR 370 (377)
T ss_dssp EEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHHhh
Confidence 477761 25789999999999999999999998876443
No 92
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.04 E-value=0.011 Score=45.56 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=40.9
Q ss_pred ccccccccccc------CCCcceEEEEeCCCC-eEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 8 AEIPIILVGTQ------DSDSFELLIVSLDNK-QWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 8 ~~i~~~~~~~~------~~~~~~F~ivt~~~r-t~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.-||+.++-+. +.+...|||.+++++ |-.++|.+..+.+.|+.+|+..|.
T Consensus 121 ~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 121 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp EEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred eeecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 34777777663 557789999996655 779999999999999999998764
No 93
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=96.03 E-value=0.0045 Score=47.33 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=38.6
Q ss_pred CCCCCCCccc--------cccccccc-----CCCcceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAEI--------PIILVGTQ-----DSDSFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQ 55 (165)
Q Consensus 1 ~s~y~~~~~i--------~~~~~~~~-----~~~~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~ 55 (165)
|+||+++++. ++.-|.+. ...+|.+.+..| ....+++.|++|+++.+||.|.+-+
T Consensus 78 LsyYKskEe~~geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qya~WMAAcrLA 148 (173)
T 4f7h_A 78 ISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLA 148 (173)
T ss_dssp EEEESCGGGCSSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEcCHhHhcCCCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHHHHHHHHhhhh
Confidence 5789998873 22333332 445666665543 3568999999999999999999843
No 94
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=96.03 E-value=0.011 Score=45.33 Aligned_cols=37 Identities=30% Similarity=0.527 Sum_probs=30.0
Q ss_pred cceEEEEeCC---CCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSLD---NKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 22 ~~~F~ivt~~---~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
...|.+++.. .+.|.|.|.|.+|+..||++|+.++..
T Consensus 134 ~~~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~ 173 (185)
T 2lg1_A 134 EKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINT 173 (185)
T ss_dssp SSEEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 3456667522 479999999999999999999998864
No 95
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=95.90 E-value=0.0067 Score=50.02 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=30.4
Q ss_pred cceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQI 56 (165)
Q Consensus 22 ~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~i 56 (165)
++.|.|... ++++|.|+|.|++|++.|+++|++++
T Consensus 308 ~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 308 KNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp SSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 578999741 36899999999999999999999876
No 96
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=95.87 E-value=0.006 Score=46.23 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=38.9
Q ss_pred CCCCCCCccc---cc---cc--cccc-----CCCcceEEEEeC--C-CCeEEEEeCCHHHHHHHHHHHHHH
Q psy17773 1 MSHYRNAAEI---PI---IL--VGTQ-----DSDSFELLIVSL--D-NKQWQFEAANSEERDDWIAAIQQQ 55 (165)
Q Consensus 1 ~s~y~~~~~i---~~---~~--~~~~-----~~~~~~F~ivt~--~-~rt~~fqa~se~E~~~Wi~ai~~~ 55 (165)
|+||+++++. |+ ++ |.+. ...+|.|.+..| + ...++|.|++|.+..+||.|.+-+
T Consensus 57 LsyYKSkEe~~geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~LrcdsE~QYa~WMAAcrLA 127 (165)
T 4bbk_A 57 IAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILA 127 (165)
T ss_dssp EEEESSGGGTTSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEcCHHHhcCCCceEEecCccEEecccccccceeeEEEecCCCCcceeeeeecCCHHHHHHHHHHhhhc
Confidence 5899998874 22 22 2222 456777777542 1 458999999999999999999853
No 97
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=95.78 E-value=0.0016 Score=56.26 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=0.0
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHH
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~ 61 (165)
+.+++|+|.+ +.++|.|+|.|++|+..|+++|+.++.....
T Consensus 326 ~~~~~F~i~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~ 366 (510)
T 3jzy_A 326 SDEPVFHISH-IDRVYTLRTDNINERTAWVQKIKAASEQYID 366 (510)
T ss_dssp ------------------------------------------
T ss_pred ccccceeeec-cceeEEeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4468999988 7899999999999999999999998876543
No 98
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=95.73 E-value=0.01 Score=50.16 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=32.4
Q ss_pred CCcceEEEEeCCCCeE---EEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLDNKQW---QFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~---~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.+.++|+|.++..+++ .|.+++++|++.|+.||+.++..
T Consensus 68 ~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~ 109 (446)
T 4ejn_A 68 PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADG 109 (446)
T ss_dssp SSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred CCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence 4568999998445565 79999999999999999988753
No 99
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=95.72 E-value=0.0098 Score=49.47 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=37.3
Q ss_pred cccccccccc---CCCcceEEEEeC----CCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773 9 EIPIILVGTQ---DSDSFELLIVSL----DNKQWQFEAANSEERDDWIAAIQQQILSS 59 (165)
Q Consensus 9 ~i~~~~~~~~---~~~~~~F~ivt~----~~rt~~fqa~se~E~~~Wi~ai~~~i~~~ 59 (165)
.||+....+. ..+.+.|.|... +.++|.|+|.|++|++.|+++|++++...
T Consensus 263 ~i~l~~~~v~~~~~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 320 (354)
T 2rgn_B 263 SIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQ 320 (354)
T ss_dssp EEEGGGEEEEESGGGCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eeeccceeeeeccCCCCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 3444443332 344678988752 13799999999999999999999988664
No 100
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=95.71 E-value=0.023 Score=48.11 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=32.9
Q ss_pred cceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773 22 SFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILSSL 60 (165)
Q Consensus 22 ~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~~~l 60 (165)
++.|.|.+.. .++|.|+|.|++|+..|+++|+.++....
T Consensus 327 ~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~ 366 (402)
T 2dfk_A 327 KNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQ 366 (402)
T ss_dssp SSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 3689998732 57999999999999999999999876643
No 101
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=95.63 E-value=0.019 Score=46.50 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=31.1
Q ss_pred CCCcceEEEEeCCCC------eEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNK------QWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~r------t~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
...+|||.|.. +.. .++|-|++++++..||.||+.+..
T Consensus 197 aPt~~~F~ik~-~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 197 APTDHGLCIKP-NKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp CSSSEEEEEEE-TTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEc-ccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 44579999986 322 599999999999999999987654
No 102
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=95.40 E-value=0.027 Score=46.74 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=30.1
Q ss_pred CcceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 21 ~~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
+...|.+++. +.+.|.|+|.|.+|+..||+.|++++..
T Consensus 332 ~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~ 372 (377)
T 3p6a_A 332 DHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGS 372 (377)
T ss_dssp CTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence 3445555553 4579999999999999999999998864
No 103
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=95.37 E-value=0.051 Score=51.72 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=44.5
Q ss_pred CCCCccccccccccc-----CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy17773 4 YRNAAEIPIILVGTQ-----DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASL 65 (165)
Q Consensus 4 y~~~~~i~~~~~~~~-----~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~l~~~~l 65 (165)
|.....||+....+. ..-++.|.|....+.+|.|+|.|++|++.||++|+....++.....+
T Consensus 488 y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~~~~r~~ 554 (1049)
T 3ksy_A 488 YRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTLERML 554 (1049)
T ss_dssp CCCCCEECCSSCCCCCCCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEcCceEEEECCCCccccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555556666655553 22358999987445699999999999999999999877655443333
No 104
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.36 E-value=0.025 Score=41.30 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=30.0
Q ss_pred cceEEEEeCCCCeEEEEeCC---------------HHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSLDNKQWQFEAAN---------------SEERDDWIAAIQQQIL 57 (165)
Q Consensus 22 ~~~F~ivt~~~rt~~fqa~s---------------e~E~~~Wi~ai~~~i~ 57 (165)
.+||+|+| .+.+|+.+++. .+.++.|..||+++++
T Consensus 74 phcFEi~T-~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 74 PHCFEIIT-DTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp CCSEEEEC-SSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred CceEEEEE-CCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 49999999 89999998743 6999999999998764
No 105
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=95.36 E-value=0.023 Score=48.77 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=32.7
Q ss_pred cceEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhH
Q psy17773 22 SFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILSSL 60 (165)
Q Consensus 22 ~~~F~ivt~~-~rt~~fqa~se~E~~~Wi~ai~~~i~~~l 60 (165)
++.|.|.+.. .++|.|+|.|++|+..|+++|+.++....
T Consensus 404 ~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~ 443 (466)
T 2pz1_A 404 KNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQ 443 (466)
T ss_dssp CEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 4789998732 67999999999999999999999876543
No 106
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=95.35 E-value=0.024 Score=49.98 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=32.7
Q ss_pred CCCcceEEEEeC---CCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773 19 DSDSFELLIVSL---DNKQWQFEAANSEERDDWIAAIQQQILSS 59 (165)
Q Consensus 19 ~~~~~~F~ivt~---~~rt~~fqa~se~E~~~Wi~ai~~~i~~~ 59 (165)
.++...|.+++. +.++|.|+|.|.+|++.||+.|+++|..+
T Consensus 483 ~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~ 526 (536)
T 3odw_A 483 ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 526 (536)
T ss_dssp TTCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTS
T ss_pred cccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 334556667663 46799999999999999999999998753
No 107
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=95.16 E-value=0.026 Score=47.18 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773 32 NKQWQFEAANSEERDDWIAAIQQQILSS 59 (165)
Q Consensus 32 ~rt~~fqa~se~E~~~Wi~ai~~~i~~~ 59 (165)
.++|.|+|.|++|+..|+++|++++...
T Consensus 344 ~~~~~l~a~s~~ek~~W~~~i~~~i~~~ 371 (385)
T 1txd_A 344 AQIYELVAQTVSEKTVWQDLICRMAASV 371 (385)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999888654
No 108
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=95.07 E-value=0.038 Score=39.76 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=31.0
Q ss_pred CcceEEEEeCCC-CeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDN-KQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 21 ~~~~F~ivt~~~-rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
...||.|+.... ++.+|.|+|++|+..|+.+|+.-+.
T Consensus 84 ~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~ 121 (131)
T 1mai_A 84 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIH 121 (131)
T ss_dssp GGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 468999999442 6999999999999999999986443
No 109
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=94.95 E-value=0.027 Score=41.37 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=32.6
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.++.+.|.|.+...-.|+|+|.++.++..|++.|+..+.
T Consensus 92 PD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~ 130 (136)
T 1v5m_A 92 PEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVD 130 (136)
T ss_dssp CCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcC
Confidence 556799999884445999999999999999999987653
No 110
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=94.80 E-value=0.045 Score=44.89 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=32.1
Q ss_pred CCCcceEEEEeCC-----CCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLD-----NKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 19 ~~~~~~F~ivt~~-----~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.+.+|||.|.++. ...++|-|++++++..||.||.-+..
T Consensus 223 aPt~~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 223 APTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp CSCSCEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 5668999998622 24799999999999999999987654
No 111
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=94.66 E-value=0.02 Score=41.66 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=29.4
Q ss_pred CcceEEEEeCCCCeEEEEeC---C--------HHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDNKQWQFEAA---N--------SEERDDWIAAIQQQIL 57 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~---s--------e~E~~~Wi~ai~~~i~ 57 (165)
..+||+|+| .+.+|+.+++ . .+.++.|..||+++++
T Consensus 73 ~~hcFEi~T-~~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm 119 (125)
T 2coa_A 73 NPHCFEIVT-ANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM 119 (125)
T ss_dssp CCEEEEEEC-SSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred CCceEEEEe-CCeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence 459999999 8999999974 1 2669999999998764
No 112
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=89.69 E-value=0.15 Score=30.67 Aligned_cols=39 Identities=26% Similarity=0.604 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCC-CCCeeeecccceeeeccccccccCCCc
Q psy17773 73 PGNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGAH 111 (165)
Q Consensus 73 ~~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~~ 111 (165)
.....|++|++. -|.|=.-.-|..||-.|.-.++..|++
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 356789999986 579998889999999999877766553
No 113
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=86.79 E-value=0.22 Score=29.39 Aligned_cols=35 Identities=29% Similarity=0.580 Sum_probs=28.9
Q ss_pred CCCCCCCCC-CCCeeeecccceeeeccccccccCCC
Q psy17773 76 LTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGA 110 (165)
Q Consensus 76 ~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~ 110 (165)
..|++|+.. -|.|=.-..|-.+|-.|.-..+..|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999986 57999998999999999976665544
No 114
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=85.36 E-value=0.22 Score=31.84 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCC-CCCeeeecccceeeeccccccccCCC
Q psy17773 72 VPGNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGA 110 (165)
Q Consensus 72 ~~~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~ 110 (165)
......|++|+.. -|.|=.-..|-.||-.|.-..+..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 5677899999986 57999888999999999977766554
No 115
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=83.56 E-value=0.35 Score=34.50 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCcceEEEEeCC-CCeEEE--EeCCHH-HHHHHHHHHHHHHH
Q psy17773 20 SDSFELLIVSLD-NKQWQF--EAANSE-ERDDWIAAIQQQIL 57 (165)
Q Consensus 20 ~~~~~F~ivt~~-~rt~~f--qa~se~-E~~~Wi~ai~~~i~ 57 (165)
++...|+|-++. ...|.+ ||.|.+ .++.|+..|++.++
T Consensus 71 ~d~~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~ 112 (119)
T 1fho_A 71 EDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQE 112 (119)
T ss_dssp CCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCH
T ss_pred CCCcEEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHHH
Confidence 456679987633 457788 999999 99999999987443
No 116
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=83.12 E-value=0.49 Score=30.46 Aligned_cols=39 Identities=28% Similarity=0.549 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCCC-CCCeeeecccceeeeccccccccCCC
Q psy17773 72 VPGNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGA 110 (165)
Q Consensus 72 ~~~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~ 110 (165)
......|+.|+.. -|.|-.-.-|-.||-.|.-..+..|.
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 3456799999986 68999988999999999876666554
No 117
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=81.14 E-value=0.78 Score=35.93 Aligned_cols=33 Identities=30% Similarity=0.718 Sum_probs=27.9
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeeccccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 104 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~i 104 (165)
.|.-..|+.||.++..+.+...|.++|..|..-
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~ 179 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAAL 179 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSS
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCC
Confidence 456678999999977788999999999999754
No 118
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=80.30 E-value=0.54 Score=33.41 Aligned_cols=38 Identities=26% Similarity=0.600 Sum_probs=29.4
Q ss_pred CCCCCCCCCCC-CCCeeeecccceeeeccccccccCCCc
Q psy17773 74 GNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGAH 111 (165)
Q Consensus 74 ~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~~ 111 (165)
-...|++||+. -|.|=.-.-|-++|-.|.-.++..|.+
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 35789999986 689998889999999998666544443
No 119
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=76.64 E-value=0.82 Score=30.93 Aligned_cols=30 Identities=23% Similarity=0.613 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCCeeeecccceeeeccccccc
Q psy17773 74 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 74 ~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR 106 (165)
|+..|.-||.+.. ...||++.|..|+++.|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999998754 45899999999998776
No 120
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=73.24 E-value=0.6 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.526 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCC-CCCeee--ecccceeeeccccccccCCC
Q psy17773 73 PGNLTCADCAEA-GPTWAS--LNLGLLLCIQCCGVHRCLGA 110 (165)
Q Consensus 73 ~~N~~CaDCg~~-~p~w~s--~n~Gv~lC~~Cs~iHR~lg~ 110 (165)
.....|+.|+.. -|.|=. -.-| .||-.|.-.++..|+
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 456789999986 679987 5667 899999987776654
No 121
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=73.21 E-value=0.66 Score=32.73 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCC-Ceeeecccceeeeccccccc
Q psy17773 74 GNLTCADCAEAGP-TWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 74 ~N~~CaDCg~~~p-~w~s~n~Gv~lC~~Cs~iHR 106 (165)
....|.+||.+=| .-.-..-++..|+.|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 4679999998733 22223347888999997543
No 122
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=71.15 E-value=6.1 Score=31.19 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=33.2
Q ss_pred CCCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHH
Q psy17773 19 DSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56 (165)
Q Consensus 19 ~~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i 56 (165)
+.+++.+.||+ .+.+..|.+++++++..|-..|+...
T Consensus 76 dk~s~TlAIIc-~d~~~vLAFds~e~l~~W~~~l~~sl 112 (224)
T 3ml4_A 76 EGLAHTLAIIC-LSQAVMLGFDSHEAMCAWDTRIRYAL 112 (224)
T ss_dssp TTEEEEEEEEE-SSCEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCcccEEEEEe-cCcEEEEEeCCHHHHHHHHHHHhhcc
Confidence 66789999999 88999999999999999999997644
No 123
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=69.42 E-value=1.9 Score=28.78 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 73 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 73 ~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
+....|.-||.+.. ...||++.|..|++..|-
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 35678999998654 569999999999998873
No 124
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=68.37 E-value=1.5 Score=30.51 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 76 LTCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 76 ~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
..|.-||.+.. ...||++.|..|+++.|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57999997654 458999999999997773
No 125
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=67.84 E-value=2.9 Score=30.96 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCCC-Ceeeecccceeeeccccccc
Q psy17773 72 VPGNLTCADCAEAGP-TWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p-~w~s~n~Gv~lC~~Cs~iHR 106 (165)
...-..|.+||.+=| .-.-.--++..|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 466789999998733 22222337889999987653
No 126
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=67.60 E-value=1.8 Score=29.26 Aligned_cols=33 Identities=15% Similarity=0.476 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
.+.+..|.-||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 4 GSSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CCSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 456778999998665 458999999999998873
No 127
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=66.84 E-value=11 Score=34.36 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=34.2
Q ss_pred CCcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh
Q psy17773 20 SDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS 59 (165)
Q Consensus 20 ~~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~ 59 (165)
...++|.+.+...++|.++++|+.++.+|+.+|+++...+
T Consensus 615 ~~~~~l~~~~k~~k~f~~~t~~~~~~~~W~~~i~~~~~~~ 654 (689)
T 3v5w_A 615 KERKCLLLKIRGGKQFILQCDSDPELVQWKKELRDAYREA 654 (689)
T ss_dssp SSCEEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeeeecCCcEEEEECCChHHHHHHHHHHHHHHHHH
Confidence 4467888887679999999999999999999999876543
No 128
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=66.63 E-value=2.2 Score=30.32 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCCCCeeeecccceeeeccccccc
Q psy17773 74 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 74 ~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR 106 (165)
....|.-||.+.. ...||++.|..|+++.|
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFR 36 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhh
Confidence 4678999998654 56999999999999777
No 129
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=66.46 E-value=19 Score=26.47 Aligned_cols=75 Identities=20% Similarity=0.341 Sum_probs=47.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHHhHH--------HHHHHHHH------h--hCCCCCCCCCCCCC-----CCCeeee
Q psy17773 33 KQWQFEAANSEERDDWIAAIQQQILSSLQ--------TASLQSIR------S--RVPGNLTCADCAEA-----GPTWASL 91 (165)
Q Consensus 33 rt~~fqa~se~E~~~Wi~ai~~~i~~~l~--------~~~l~~l~------~--~~~~N~~CaDCg~~-----~p~w~s~ 91 (165)
+..-+..-+++|++.=+++|+.+..-... .+-++.+. + ...+...|+-|+.+ ++.-.+.
T Consensus 10 ~~~dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~~~g~~C~ 89 (153)
T 2zet_C 10 KRLDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCL 89 (153)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCSSCCEECT
T ss_pred cCCCcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCccccccCCCCcCC
Confidence 34456667999998888888765322111 11122221 1 12367899999987 6667777
Q ss_pred cccceeeecccccccc
Q psy17773 92 NLGLLLCIQCCGVHRC 107 (165)
Q Consensus 92 n~Gv~lC~~Cs~iHR~ 107 (165)
.-...+|..|+..++.
T Consensus 90 ~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 90 ECSLFVCKSCSHAHPE 105 (153)
T ss_dssp TTCCEECGGGEECCSS
T ss_pred CCCchhhcccccccCC
Confidence 8888999999976653
No 130
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=66.13 E-value=1.5 Score=30.67 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeeccccccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR 106 (165)
.+....|.-||.+. ....||++.|..|+++.|
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFK 35 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhc
Confidence 45678899999754 356899999999999877
No 131
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=66.03 E-value=1.4 Score=31.13 Aligned_cols=33 Identities=15% Similarity=0.376 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCCCC-Ceeeecccceeeecccccc
Q psy17773 73 PGNLTCADCAEAGP-TWASLNLGLLLCIQCCGVH 105 (165)
Q Consensus 73 ~~N~~CaDCg~~~p-~w~s~n~Gv~lC~~Cs~iH 105 (165)
.+...|.+||+..- .|..-+|++.+|..|....
T Consensus 3 ~~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 3 FDYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 35668999998633 3345699999999998653
No 132
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=65.54 E-value=2.1 Score=29.17 Aligned_cols=32 Identities=19% Similarity=0.517 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 73 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 73 ~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
+....|.-||.+.. ...||++.|..|++..|-
T Consensus 8 ~~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 8 GSKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp --CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 34578999998654 569999999999998773
No 133
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=64.70 E-value=2.7 Score=29.69 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCC-CCCeeeecccceeeeccccccccCCCc
Q psy17773 73 PGNLTCADCAEA-GPTWASLNLGLLLCIQCCGVHRCLGAH 111 (165)
Q Consensus 73 ~~N~~CaDCg~~-~p~w~s~n~Gv~lC~~Cs~iHR~lg~~ 111 (165)
.....|+.|+.. -|.|=.-..|-.||-.|.-..+..|.+
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 456799999986 689999999999999999777665554
No 134
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.58 E-value=16 Score=26.30 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=42.4
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHhHH-H-------HHHHHHHhh--CCCCCCCCCCCCCC-----CCeeeecccceeeecc
Q psy17773 37 FEAANSEERDDWIAAIQQQILSSLQ-T-------ASLQSIRSR--VPGNLTCADCAEAG-----PTWASLNLGLLLCIQC 101 (165)
Q Consensus 37 fqa~se~E~~~Wi~ai~~~i~~~l~-~-------~~l~~l~~~--~~~N~~CaDCg~~~-----p~w~s~n~Gv~lC~~C 101 (165)
++.-+++|++.=+++|+.+..-... + .-|+.++.. ..+...|+-|+.+- +.-.+..-...+|..|
T Consensus 7 ls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 7 QEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp -CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred cccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 4455888888777777755432211 1 223333321 35677899999863 4445666777888888
Q ss_pred cccc
Q psy17773 102 CGVH 105 (165)
Q Consensus 102 s~iH 105 (165)
++.+
T Consensus 87 ~~~~ 90 (134)
T 1zbd_B 87 GVET 90 (134)
T ss_dssp EEEC
T ss_pred CCcc
Confidence 8766
No 135
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=62.10 E-value=1.7 Score=30.72 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
.+....|.-||.+.. ...||++.|..|+++.|-
T Consensus 6 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKVS---GYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBEE---EEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceeeCcccHHHHHHHHhh
Confidence 456778999997643 669999999999998773
No 136
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=61.95 E-value=2.4 Score=28.43 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 76 LTCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 76 ~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
..|.-||.+.. ...||++.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46999997664 458999999999998873
No 137
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=61.74 E-value=3 Score=28.13 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 77 TCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 77 ~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
.|.-||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888997654 568999999999998773
No 138
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=60.53 E-value=2.1 Score=29.45 Aligned_cols=29 Identities=24% Similarity=0.631 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCeeeecccceeeeccccccc
Q psy17773 75 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 75 N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR 106 (165)
...|.-||.+.. ...||++.|..|+++.|
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 31 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFK 31 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHH
Confidence 357999997654 45899999999999877
No 139
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=60.19 E-value=4.5 Score=24.96 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCCeeeecccceeeeccccccc
Q psy17773 75 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 75 N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR 106 (165)
-..|.+||.....+ ...-|.++|..|.-+-.
T Consensus 11 ~~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 11 RVTCPNHPDAILVE-DYRAGDMICPECGLVVG 41 (58)
T ss_dssp CCSBTTBSSSCCEE-CSSSCCEECTTTCCEEC
T ss_pred cccCcCCCCCceeE-eCCCCeEEeCCCCCEEe
Confidence 34799999865322 33569999999976543
No 140
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=59.34 E-value=14 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=26.5
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~ 54 (165)
..-.|.|.- +|+|+++|.+..|+...|..|=+
T Consensus 114 ~~~gF~ltl--~K~Y~W~a~s~~Er~~FI~sL~K 145 (171)
T 3hie_A 114 ISEGFILTM--SKKYYWETNSAKERTVFIKSLIT 145 (171)
T ss_dssp CTTEEEEES--SSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEe--CCeEEEecCCHHHHHHHHHHHHH
Confidence 456787653 69999999999999999998854
No 141
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=59.27 E-value=2.9 Score=28.50 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 73 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 73 ~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
.....|.-||.+.. ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 5 GMVLLCKVCGDVAS---GFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp ---CBCTTTSSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEeCCCCc---ceEeCccchhhhhhehhe
Confidence 34467999997654 568999999999998773
No 142
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=59.08 E-value=2.6 Score=29.59 Aligned_cols=30 Identities=20% Similarity=0.566 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCeeeecccceeeeccccccc
Q psy17773 74 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 74 ~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR 106 (165)
....|.-||.+.. ...||++.|..|+++.|
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 34 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFR 34 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhe
Confidence 3467999997664 45899999999999877
No 143
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=58.01 E-value=1.8 Score=29.01 Aligned_cols=31 Identities=23% Similarity=0.555 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 74 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 74 ~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
.+..|.-||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4567999997654 458999999999998873
No 144
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=54.73 E-value=2.2 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.495 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 75 NLTCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 75 N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
...|.-||.+.. ...||++.|..|+++.|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhee
Confidence 467999997653 568999999999998873
No 145
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=53.44 E-value=13 Score=34.22 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=29.2
Q ss_pred cceEEEEeCCCC----eEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSLDNK----QWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 22 ~~~F~ivt~~~r----t~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.-||.|+.+.+. +..|.|.++++.+.|+..|+.-+.
T Consensus 96 ~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~ 135 (799)
T 2zkm_X 96 LKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVK 135 (799)
T ss_dssp GTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 468999986543 579999999999999999986443
No 146
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=53.09 E-value=3.7 Score=26.94 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCeeeecccceeeecccccccc
Q psy17773 77 TCADCAEAGPTWASLNLGLLLCIQCCGVHRC 107 (165)
Q Consensus 77 ~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR~ 107 (165)
.|.-||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 4888987654 458999999999998773
No 147
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=52.26 E-value=4.4 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeeccccccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR 106 (165)
.+....|.-||.+.. ...||++.|..|+++-|
T Consensus 26 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 26 NAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ----CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 455678999998764 45899999999998776
No 148
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=52.10 E-value=4.3 Score=34.46 Aligned_cols=31 Identities=23% Similarity=0.592 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCCeeeecccceeeeccccccc
Q psy17773 73 PGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 73 ~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR 106 (165)
..+..|.-||.+... ..||+..|..|+++.|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 446789999987654 4899999999998665
No 149
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=51.16 E-value=16 Score=23.70 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=27.7
Q ss_pred HHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeecccc
Q psy17773 65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCG 103 (165)
Q Consensus 65 l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~ 103 (165)
+.++....+..-.|.-||........ .||..|..|.-
T Consensus 17 vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 17 VRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 34443337888899999987766655 59999999964
No 150
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=51.14 E-value=19 Score=29.73 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=28.7
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
..-.|.|.- +|.|+++|.+..|++.+|..|=+...+
T Consensus 184 ~~~gF~LTl--~K~YyW~A~s~kER~~FI~sLvKiy~K 219 (320)
T 3a58_A 184 ISEGFILTM--SKKYYWETNSAKERTVFIKSLITLYIQ 219 (320)
T ss_dssp CTTEEEEES--SSEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEe--CCceEEecCCHHHHHHHHHHHHHHHHH
Confidence 446676543 799999999999999999998665444
No 151
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=50.86 E-value=19 Score=33.45 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=28.4
Q ss_pred cceEEEEeCCCC-e---EEEEeCCHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSLDNK-Q---WQFEAANSEERDDWIAAIQQQI 56 (165)
Q Consensus 22 ~~~F~ivt~~~r-t---~~fqa~se~E~~~Wi~ai~~~i 56 (165)
.-+|.||+++.+ + .+|.|.++++.+.|+..|+.-+
T Consensus 103 ~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~ 141 (816)
T 3qr0_A 103 DKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYA 141 (816)
T ss_dssp HHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHH
Confidence 468999996543 2 3899999999999999998644
No 152
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=49.67 E-value=46 Score=23.67 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=27.7
Q ss_pred cceEEEEeCC-----CCeEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSLD-----NKQWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 22 ~~~F~ivt~~-----~rt~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
+..|.|+.-. .|.|.|.|.|.+|..+=+..|+..+.
T Consensus 74 P~~FKivV~k~~~~e~KrYdfEA~s~~ea~EIV~~ik~~~~ 114 (121)
T 3ulb_A 74 PEHFKIFVRREGQDDIKRYYFEAVSGQECTEIVTRLQNLLS 114 (121)
T ss_dssp TTEEEEEECCTTCSSCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEccCCCCcceeEEEeCCHHHHHHHHHHHHHHHH
Confidence 3456666422 48999999999999999998887654
No 153
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=46.53 E-value=12 Score=25.31 Aligned_cols=28 Identities=36% Similarity=0.729 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCCC-eeeec--ccceeeec
Q psy17773 73 PGNLTCADCAEAGPT-WASLN--LGLLLCIQ 100 (165)
Q Consensus 73 ~~N~~CaDCg~~~p~-w~s~n--~Gv~lC~~ 100 (165)
+....|.+|++..+. |+.+. -|-+-|..
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 345789999966555 98887 77777754
No 154
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=45.06 E-value=10 Score=21.04 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCeeeecccce-eeecccc
Q psy17773 77 TCADCAEAGPTWASLNLGLL-LCIQCCG 103 (165)
Q Consensus 77 ~CaDCg~~~p~w~s~n~Gv~-lC~~Cs~ 103 (165)
.|..|++|+..-.--+-.++ -|..|..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 58899999987765443333 3777754
No 155
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=44.55 E-value=11 Score=22.03 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCCeeeecccceeeecccccc
Q psy17773 75 NLTCADCAEAGPTWASLNLGLLLCIQCCGVH 105 (165)
Q Consensus 75 N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iH 105 (165)
...|.+||+....+ .-.-|-++|..|..+-
T Consensus 5 ~~~CP~C~~~~l~~-d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIY-DPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEE-ETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEE-cCCCCeEECcccCCcc
Confidence 45799999854333 2245889999997654
No 156
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=43.83 E-value=16 Score=28.03 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCee-eecccceeeecccccc
Q psy17773 77 TCADCAEAGPTWA-SLNLGLLLCIQCCGVH 105 (165)
Q Consensus 77 ~CaDCg~~~p~w~-s~n~Gv~lC~~Cs~iH 105 (165)
.|.+||+..+.-+ ...-|-.+|.+|.-|-
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBBC
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCCc
Confidence 6999999544443 3568999999998764
No 157
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=42.61 E-value=21 Score=33.43 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=29.7
Q ss_pred cceEEEEeCCCC----eEEEEeCCHHHHHHHHHHHHHHHH
Q psy17773 22 SFELLIVSLDNK----QWQFEAANSEERDDWIAAIQQQIL 57 (165)
Q Consensus 22 ~~~F~ivt~~~r----t~~fqa~se~E~~~Wi~ai~~~i~ 57 (165)
.-+|.|++++++ +.+|.|.++++.+.|+..|+.-+.
T Consensus 100 ~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~~ 139 (885)
T 3ohm_B 100 EKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAM 139 (885)
T ss_dssp TTEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHHh
Confidence 568999996543 589999999999999999986443
No 158
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=42.09 E-value=36 Score=26.06 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=28.4
Q ss_pred ceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHH
Q psy17773 23 FELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54 (165)
Q Consensus 23 ~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~ 54 (165)
..|-|+..++.+..|.|.|+++...|++.|..
T Consensus 116 laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~ 147 (203)
T 3a98_B 116 LAFSILYDSNCQLNFIAPDKHEYCIWTDGLNA 147 (203)
T ss_dssp GEEEEEETTTEEEEEECSSHHHHHHHHHHHHH
T ss_pred eEEEEecCCCceEEEecCCHHHHHHHHHHHHH
Confidence 47899986678999999999999999999863
No 159
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=41.06 E-value=3.2 Score=28.98 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCCCCCCCCCCCCC-Ceeeecccceeeecccc
Q psy17773 64 SLQSIRSRVPGNLTCADCAEAGP-TWASLNLGLLLCIQCCG 103 (165)
Q Consensus 64 ~l~~l~~~~~~N~~CaDCg~~~p-~w~s~n~Gv~lC~~Cs~ 103 (165)
++..+. .+.-..|.+||.+=| .-.-.--++..|+.|..
T Consensus 72 Al~ri~--~g~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 72 ALARIA--SGTFGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp HHHHHH--HTCCSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred HHHhhh--CCCcCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 344444 467789999998733 11222336778999864
No 160
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=40.97 E-value=14 Score=30.52 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCe-eeecccceeeeccccc
Q psy17773 77 TCADCAEAGPTW-ASLNLGLLLCIQCCGV 104 (165)
Q Consensus 77 ~CaDCg~~~p~w-~s~n~Gv~lC~~Cs~i 104 (165)
.|.+||...|.- ....-|-.+|.+|.-|
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 799999854443 2456799999999754
No 161
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=39.76 E-value=4.8 Score=34.77 Aligned_cols=30 Identities=23% Similarity=0.582 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCeeeecccceeeeccccccc
Q psy17773 74 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 74 ~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iHR 106 (165)
.+..|.-||.+... ..||+..|..|+++.|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 35569999987653 4899999999998766
No 162
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=39.71 E-value=20 Score=25.95 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=23.5
Q ss_pred CCCCchHHHHHHHhhHHHHHHHhhhcCCCCC
Q psy17773 122 EWPESNPRIIDEARARRLASDLKRCSYYETC 152 (165)
Q Consensus 122 ~w~~~~v~~~~~~~GN~~~n~~~e~~~~~~~ 152 (165)
.|+++|++++ +.+++..+-.+-.+.+.+..
T Consensus 132 ~w~~~ei~ll-~~lA~ql~iAi~qa~l~~~~ 161 (171)
T 4glq_A 132 QWQEIEIDQF-SELASTGSLVLERLHFLEQT 161 (171)
T ss_dssp CCCHHHHHHH-HHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5999999999 99999999999998886643
No 163
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=38.92 E-value=24 Score=26.18 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=46.1
Q ss_pred CCCCCCCCCCeeeecccceeeecccccc----ccCCCccceeeeccCCCCCCchHHHHHHHhhHHHHHHHhhh
Q psy17773 78 CADCAEAGPTWASLNLGLLLCIQCCGVH----RCLGAHVSRVRSLELDEWPESNPRIIDEARARRLASDLKRC 146 (165)
Q Consensus 78 CaDCg~~~p~w~s~n~Gv~lC~~Cs~iH----R~lg~~is~VkSl~ld~w~~~~v~~~~~~~GN~~~n~~~e~ 146 (165)
=+|.+..+|+|...+-...-|+-|--+| +.+|+ +--+.++....|++++++.+ +.++...+-.+=++
T Consensus 78 ~~~~~~~gpr~~~~tg~~t~svl~vPL~~~~g~~~Gv-lql~N~~~~~~f~~eD~e~l-~lLA~~~a~aien~ 148 (160)
T 3cit_A 78 TADPLAIGPQWLERPGTHLPCVLLLPLRGADEGSFGT-LVLANSVAISAPDGEDIESL-QLLATLLAAHLENN 148 (160)
T ss_dssp CCCTTCCSCEEEECTTSSSCEEEEEEEECSSSSEEEE-EEEEESSCCCCCCHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cccccccccccccccCcccceeEEEeeecCCCcEEEE-EEEeccCCCCCCCHHHHHHH-HHHHHHHHHHHHHH
Confidence 3566766799997775566666666665 23454 23457777778999999999 88877766655443
No 164
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=37.96 E-value=13 Score=30.65 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCee-eecccceeeeccccccc
Q psy17773 76 LTCADCAEAGPTWA-SLNLGLLLCIQCCGVHR 106 (165)
Q Consensus 76 ~~CaDCg~~~p~w~-s~n~Gv~lC~~Cs~iHR 106 (165)
..|.+||+..|.-+ .-.-|-.+|..|.-|-.
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 47999999754322 34569999999987653
No 165
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=37.58 E-value=21 Score=25.53 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeecc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQC 101 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~C 101 (165)
.|....|.+|++..--|+++.-|.+-|..=
T Consensus 31 ~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~ 60 (129)
T 2g45_A 31 PPCGWKCSKCDMRENLWLNLTDGSILCGRR 60 (129)
T ss_dssp CCCBCCCSSSSCCSSEEEETTTCCEEECCB
T ss_pred CCCCCcCccccCcCceEEeccCCccccCcc
Confidence 345668999999988899888888888553
No 166
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=32.24 E-value=32 Score=23.73 Aligned_cols=25 Identities=24% Similarity=0.624 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCeeeecccceeee
Q psy17773 75 NLTCADCAEAGPTWASLNLGLLLCI 99 (165)
Q Consensus 75 N~~CaDCg~~~p~w~s~n~Gv~lC~ 99 (165)
...|.+|++....|+++.-|-+-|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 5679999999889998888888875
No 167
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=31.61 E-value=19 Score=21.63 Aligned_cols=32 Identities=22% Similarity=0.637 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCeeeecc--------cceeeeccccccc
Q psy17773 75 NLTCADCAEAGPTWASLNL--------GLLLCIQCCGVHR 106 (165)
Q Consensus 75 N~~CaDCg~~~p~w~s~n~--------Gv~lC~~Cs~iHR 106 (165)
+..|..||.....|..+-+ -.+.|.+|....|
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 4579999988776665554 2478888865544
No 168
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.94 E-value=13 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeeccccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 104 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~i 104 (165)
.-...+|..|++. +..|+.-|..|...
T Consensus 11 ~~~k~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 11 IFKKYVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SSSEEECTTTCCE------ECTTCSSCSSSSSC
T ss_pred HhCCccCCCCCCc------CCCCceecCCCCCc
Confidence 4567789999998 44788899998643
No 169
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=30.91 E-value=22 Score=23.53 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeeccccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 104 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~i 104 (165)
....-.|..||+... -....|++.|..|...
T Consensus 24 q~~~y~Cp~CG~~~v--~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRV--DRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHSCEECSSSCCEEE--EEEETTEEEETTTCCE
T ss_pred ccccCcCCCCCCcce--eccCCCeEECCCCCCE
Confidence 556789999998532 2335799999999754
No 170
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.96 E-value=17 Score=24.52 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCC-------CC----------eeeecccceeeeccc
Q psy17773 72 VPGNLTCADCAEAG-------PT----------WASLNLGLLLCIQCC 102 (165)
Q Consensus 72 ~~~N~~CaDCg~~~-------p~----------w~s~n~Gv~lC~~Cs 102 (165)
.+.-..|+|||.+- |. -++=.|| .+|-+|-
T Consensus 30 ~~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cv 76 (89)
T 3j21_d 30 KPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCM 76 (89)
T ss_dssp CCCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHH
T ss_pred cCCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHH
Confidence 34445799999751 11 2344678 8887774
No 171
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=28.87 E-value=90 Score=19.72 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=26.6
Q ss_pred EEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17773 26 LIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58 (165)
Q Consensus 26 ~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~ 58 (165)
.|-. ++|+-.|+..|-++...+|..|+.++..
T Consensus 25 sV~y-dgr~V~Y~~asi~~L~~~I~~le~~Lg~ 56 (68)
T 1hyw_A 25 TVQK-DGRRVEFTATSVSDLKKYIAELEVQTGM 56 (68)
T ss_dssp EEEC-SSCEEEECTTTHHHHHHHHHHHHHHTTT
T ss_pred EEEE-CCEEEEEecCCHHHHHHHHHHHHHHhcc
Confidence 3434 6899999999999999999999877643
No 172
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=27.31 E-value=37 Score=21.65 Aligned_cols=29 Identities=17% Similarity=0.412 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCC--eeeecccceeeecccc
Q psy17773 75 NLTCADCAEAGPT--WASLNLGLLLCIQCCG 103 (165)
Q Consensus 75 N~~CaDCg~~~p~--w~s~n~Gv~lC~~Cs~ 103 (165)
...|.=||.+..+ -.-..-|++||.+|..
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~ 48 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVD 48 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHH
Confidence 3579999987532 2222348999999975
No 173
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.70 E-value=42 Score=22.29 Aligned_cols=30 Identities=20% Similarity=0.554 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeecccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCG 103 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~ 103 (165)
....-.|.-||...... ...||.-|..|..
T Consensus 32 q~~ky~CpfCGk~~vkR--~a~GIW~C~kCg~ 61 (83)
T 3j21_i 32 MRQKHTCPVCGRKAVKR--ISTGIWQCQKCGA 61 (83)
T ss_dssp HHSCBCCSSSCSSCEEE--EETTEEEETTTCC
T ss_pred hhcccCCCCCCCceeEe--cCcCeEEcCCCCC
Confidence 45677899999986555 4579999999964
No 174
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.19 E-value=40 Score=19.94 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCCeeeecccceeeecccccc
Q psy17773 74 GNLTCADCAEAGPTWASLNLGLLLCIQCCGVH 105 (165)
Q Consensus 74 ~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~iH 105 (165)
-.+.|..||+.-- .+ -....+.|.+|.-.|
T Consensus 18 ~~k~CP~CG~~~f-m~-~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVF-MA-DHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCE-EE-ECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceE-Ee-cCCCeEECCCCCCEE
Confidence 4568999998532 22 345788899886544
No 175
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.43 E-value=42 Score=20.82 Aligned_cols=20 Identities=30% Similarity=0.786 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeec
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQ 100 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~ 100 (165)
.||...|+-||. ||-.||.+
T Consensus 16 ~pgePvCvvCGr---------yGeYICd~ 35 (60)
T 2yqp_A 16 EPGEPICVVCGR---------YGEYICDK 35 (60)
T ss_dssp CTTSCCCSSSSS---------CCSEECSS
T ss_pred CCCCceEEEecC---------ccceeecC
Confidence 578888999996 67777764
No 176
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=24.32 E-value=21 Score=25.28 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=27.3
Q ss_pred HHHHHHHhhCCCCCCCCCCCCCCCCeeeecccceeeeccccc
Q psy17773 63 ASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGV 104 (165)
Q Consensus 63 ~~l~~l~~~~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~i 104 (165)
..+.++..+....-.|.-||...... ...||.-|..|.-.
T Consensus 48 K~vkkiE~~q~akytCPfCGk~~vKR--~avGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 48 RRVAEIESEMNEDHACPNCGEDRVDR--QGTGIWQCSYCDYK 87 (116)
T ss_dssp HHHHHHHHHHHSCEECSSSCCEEEEE--EETTEEEETTTCCE
T ss_pred HHHHHHHHHhccCCcCCCCCCceeEe--cCceeEECCCCCCE
Confidence 34455533367788999999854433 34699999999643
No 177
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=23.93 E-value=56 Score=19.50 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCC--Ceeeecccceeeecccc
Q psy17773 75 NLTCADCAEAGP--TWASLNLGLLLCIQCCG 103 (165)
Q Consensus 75 N~~CaDCg~~~p--~w~s~n~Gv~lC~~Cs~ 103 (165)
...|.=||.+.. .-.-..-|++||.+|..
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~ 41 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGPSVYICDECVD 41 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECSSCEEEHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCCCCEehHHHHH
Confidence 457999998643 22222348999999974
No 178
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=23.72 E-value=57 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeecccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCG 103 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~ 103 (165)
....-.|.-||....... ..||.-|..|.-
T Consensus 33 q~~ky~CpfCgk~~vkR~--a~GIW~C~~C~~ 62 (92)
T 3izc_m 33 QHARYDCSFCGKKTVKRG--AAGIWTCSCCKK 62 (92)
T ss_dssp HHSCCCCSSSCSSCCEEE--ETTEEECTTTCC
T ss_pred HhcCCcCCCCCCceeeec--ccceEEcCCCCC
Confidence 456778999998876554 479999999954
No 179
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=23.16 E-value=18 Score=24.96 Aligned_cols=27 Identities=30% Similarity=0.832 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCee----eecccceee
Q psy17773 72 VPGNLTCADCAEAGPTWA----SLNLGLLLC 98 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~----s~n~Gv~lC 98 (165)
.|....|.+|++.+..|+ .+.-|-.-|
T Consensus 15 ~p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC 45 (102)
T 2ida_A 15 TPSALGCEECLKIGSPWVHLRICRTCGHVGC 45 (102)
T ss_dssp CCSSSSCHHHHTTTCCCSCBEEESSSCCCCB
T ss_pred CCCCCcCccccccCCcchheeeeeEcCCCcc
Confidence 456778999999986664 444444444
No 180
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=21.46 E-value=60 Score=21.94 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCCCCeeeecccceeeecccc
Q psy17773 72 VPGNLTCADCAEAGPTWASLNLGLLLCIQCCG 103 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~w~s~n~Gv~lC~~Cs~ 103 (165)
....-.|.-||....... ..||.-|..|.-
T Consensus 33 q~~ky~CpfCgk~~vkR~--a~GIW~C~~Cg~ 62 (92)
T 3iz5_m 33 QHSKYFCEFCGKFAVKRK--AVGIWGCKDCGK 62 (92)
T ss_dssp HHSCBCCTTTCSSCBEEE--ETTEEECSSSCC
T ss_pred HhccccCcccCCCeeEec--CcceEEcCCCCC
Confidence 445668999999876554 579999999964
No 181
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=20.36 E-value=1.8e+02 Score=20.66 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=32.6
Q ss_pred CcceEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHhhCCCCCCCCC
Q psy17773 21 DSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS-----------------LQTASLQSIRSRVPGNLTCAD 80 (165)
Q Consensus 21 ~~~~F~ivt~~~rt~~fqa~se~E~~~Wi~ai~~~i~~~-----------------l~~~~l~~l~~~~~~N~~CaD 80 (165)
....|+|....+-...|.+.|.++ .|-..++.. ... |....+..+.++.|+.+.|.+
T Consensus 65 ~~P~F~V~~e~~~~~~~~g~Sp~~--~W~~il~~i-~~~~~~~~~~~~~sG~~~FGl~~p~V~~lie~Lpg~~~C~~ 138 (146)
T 2wzo_A 65 VQPQFEIVPEDDPQNAIVSSSADA--CHAELLRTI-STTMGKLMPNLLPAGADFFGFSHPAIHNLIQSCPGARKCIN 138 (146)
T ss_dssp SSEEEEEEETTCGGGCEEESSHHH--HHHHHHHHH-HHHHTCCCTTCCCCHHHHHTTTSHHHHHHHTTSTTGGGCTT
T ss_pred CcceeEEEecCCCCceEEeCChHH--HHHHHHHHH-HHHhcCcCCCCCCChhheecCCCHHHHHHHHhCCCchhccc
Confidence 356788764233344567777765 477666542 211 113444555445999998865
No 182
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=20.21 E-value=36 Score=24.22 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCCCC-----------------eeeecccceeeeccc
Q psy17773 72 VPGNLTCADCAEAGPT-----------------WASLNLGLLLCIQCC 102 (165)
Q Consensus 72 ~~~N~~CaDCg~~~p~-----------------w~s~n~Gv~lC~~Cs 102 (165)
.+.-..|+|||.+-+- -++=.||-.+|.+|-
T Consensus 38 ~~~~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CV 85 (121)
T 3u5e_g 38 LATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCV 85 (121)
T ss_dssp CCCCCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHH
T ss_pred CCCCCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHH
Confidence 4444569999975211 334567777887775
Done!