RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17773
(165 letters)
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 105 bits (263), Expect = 8e-30
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 50 AAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLG 109
++ + Q L+ L + R N CADC GP WAS N+G+ +CI+C G+HR LG
Sbjct: 5 SSGKAQKLNEQHQLILSKLL-REEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLG 63
Query: 110 AHVSRVRSLELDEWPES 126
H+SRV+S+ LD+W
Sbjct: 64 VHISRVKSVNLDQWTAE 80
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein,
cysteine-rich motif, GTPase activation; 2.00A
{Cryptosporidium parvum iowa II}
Length = 138
Score = 104 bits (261), Expect = 1e-29
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 53 QQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHV 112
+ + L+ Q +R+R P N TC DC PTW SL+ + +C+ C HR +G H+
Sbjct: 15 KGFVSDKLRDNFFQIVRNR-PENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHI 73
Query: 113 SRVRSLELDEWPESN 127
S VRS +LD++
Sbjct: 74 SFVRSSDLDKFTPIQ 88
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein
trafficking, hydrolase AC; 2.40A {Plasmodium falciparum
3D7}
Length = 163
Score = 104 bits (261), Expect = 2e-29
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 57 LSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVR 116
+++ + ++ N C DC + P W S+N G+ LCI C GVHR LG H+S VR
Sbjct: 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVR 63
Query: 117 SLELDEWPESN 127
S+++D + +
Sbjct: 64 SIKMDIFTDEQ 74
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 107 bits (268), Expect = 3e-29
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 60 LQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLE 119
L + ++ R+ GN C DC PTW S NLG+L CI+C G+HR LG H SR++SL
Sbjct: 3 LTKEIISEVQ-RMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLT 61
Query: 120 LDEWPES 126
LD S
Sbjct: 62 LDVLGTS 68
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural
genomics, structural genomics consortium, SGC, protein
transport; 1.90A {Homo sapiens}
Length = 134
Score = 102 bits (257), Expect = 5e-29
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 53 QQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHV 112
+ A L ++ N CADC GP WAS N+G+ +CI+C G+HR LG H+
Sbjct: 6 KSVKDVDRYQAVLANLL-LEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHI 64
Query: 113 SRVRSLELDEWPES 126
SRV+S+ LD+W +
Sbjct: 65 SRVKSVNLDQWTQE 78
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 106 bits (265), Expect = 1e-28
Identities = 34/66 (51%), Positives = 38/66 (57%)
Query: 61 QTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLEL 120
T L + PGN C DC A PTW S NLG+L CIQC GVHR LG SR++SL L
Sbjct: 28 LTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTL 87
Query: 121 DEWPES 126
D S
Sbjct: 88 DLLGPS 93
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 107 bits (268), Expect = 1e-28
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
+ ++ V GN C DC E P WAS+NLG+ LCIQC G+HR LG H S+VRSL LD W
Sbjct: 36 VAQVQ-SVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWE 94
Query: 125 ES 126
Sbjct: 95 PE 96
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 106 bits (266), Expect = 8e-28
Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 53 QQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHV 112
L + ++ PGN C DC A PTW S NLG+L CIQC GVHR LG
Sbjct: 2 HDGEPHDLTKLLIAEVK-SRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRF 60
Query: 113 SRVRSLELDEWPESN 127
SR++SL LD S
Sbjct: 61 SRMQSLTLDLLGPSE 75
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural
genomics consorti ER-golgi transport, golgi apparatus,
GTPase activation; 2.40A {Homo sapiens}
Length = 147
Score = 99 bits (249), Expect = 1e-27
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 39 AANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLC 98
+++ + + S L+ +R + N C +C P W S+ G+ +C
Sbjct: 3 SSHHHHHHSSGLVPRGSMASPRTRKVLKEVRVQ-DENNVCFECGAFNPQWVSVTYGIWIC 61
Query: 99 IQCCGVHRCLGAHVSRVRSLELDEWPES 126
++C G HR LG H+S VRS+ +D+W +
Sbjct: 62 LECSGRHRGLGVHLSFVRSVTMDKWKDI 89
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 101 bits (253), Expect = 3e-26
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 63 ASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE 122
++ + + PGN CADC P WAS LG+ +C+ C G+HR + VS+V+S+ LD
Sbjct: 23 RAVLELL-QRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDA 80
Query: 123 WPES 126
W E+
Sbjct: 81 WEEA 84
Score = 35.5 bits (81), Expect = 0.004
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 32 NKQWQFEAANSEERDDWIAAIQQQILSSL 60
++++ F ++ +W+AA Q+ + +
Sbjct: 347 DRKFLFACETESDQREWVAAFQKAVDRPM 375
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein,
REV-interacting protein, human immunodeficiency virus,
AIDS, structural genomics; 1.48A {Homo sapiens} PDB:
2d9l_A
Length = 140
Score = 93.7 bits (233), Expect = 2e-25
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 39 AANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLC 98
++++ + + ++L + +P N C DC + GPT+ ++ +G +C
Sbjct: 1 GSSAKRKQE---EKHLKMLRDMT---------GLPHNRKCFDCDQRGPTYVNMTVGSFVC 48
Query: 99 IQCCGVHRCLGAHVSRVRSLELDEWPES 126
C G R L RV+S+ + + +
Sbjct: 49 TSCSGSLRGLNPP-HRVKSISMTTFTQQ 75
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3;
arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 149
Score = 91.6 bits (227), Expect = 2e-24
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-W 123
+ +RS P N C DC P+WAS+ G+ LCI C G HR LG H+S +RS ELD W
Sbjct: 20 FKRLRSV-PTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNW 78
Query: 124 PES 126
Sbjct: 79 SWF 81
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural
genomics, structural genomics consortium, SGC, metal
binding protein; 1.80A {Homo sapiens}
Length = 144
Score = 91.2 bits (226), Expect = 3e-24
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDE-W 123
+ +R+ P N C DC P+WAS+ G+ LCI C GVHR LG H+S +RS ELD W
Sbjct: 28 FKRLRAV-PTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 86
Query: 124 PES 126
Sbjct: 87 NWF 89
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 83.4 bits (206), Expect = 6e-20
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWP 124
L+ +R + N C +C P W S+ G+ +C++C G HR LG H+S VRS+ +D+W
Sbjct: 28 LKEVRVQ-DENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWK 86
Query: 125 ES 126
+
Sbjct: 87 DI 88
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 62.2 bits (152), Expect = 7e-13
Identities = 31/42 (73%), Positives = 40/42 (95%)
Query: 124 PESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
+NPR+ID++RAR+L++DLKRC+YYETCATYGLNV+RVFQD
Sbjct: 132 SAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173
Score = 26.8 bits (60), Expect = 2.8
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 1 MSHYRNAAEIPIILVGTQD 19
+ +RNA+E+P++LVGTQD
Sbjct: 111 LCSFRNASEVPMVLVGTQD 129
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 60.6 bits (146), Expect = 1e-12
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 1 MSHYRNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL 60
G + ++FE LIVS + W FEAA+ EERD W+ AI+ QIL+SL
Sbjct: 68 PRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127
Query: 61 Q 61
Q
Sbjct: 128 Q 128
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 50.3 bits (121), Expect = 2e-08
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 125 ESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
S+PR++ +ARAR L +D+KRCSYYET ATYGLNVDRVFQ+
Sbjct: 122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQE 162
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 39.5 bits (92), Expect = 7e-05
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 15 VGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTAS 64
+ D DS + + +Q++ A +++ER W++ +Q +
Sbjct: 62 ISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIG 111
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 39.5 bits (92), Expect = 7e-05
Identities = 11/50 (22%), Positives = 16/50 (32%)
Query: 5 RNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54
R E S L IV D K A ++++ W +Q
Sbjct: 59 RTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQD 108
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 39.4 bits (93), Expect = 1e-04
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R++ + + + LA C++ E+ A +NV+ +F D
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein;
1.90A {Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 37.5 bits (87), Expect = 3e-04
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 15 VGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQT 62
+ +D+ + ++ + + +A N+ ER W+ A+ S T
Sbjct: 51 IKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLTDT 98
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 38.0 bits (88), Expect = 3e-04
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 5 RNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54
+ E + S L + + + A ++ W A+ +
Sbjct: 62 KVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALME 111
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 38.0 bits (88), Expect = 3e-04
Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 1 MSHYRNAAEIP---IILVGTQDSDS--FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQ 55
MS + +IP +++ + + I ++ N+++ +W+ + +
Sbjct: 65 MSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRL 124
Query: 56 ILSS 59
S
Sbjct: 125 TKSG 128
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 37.9 bits (89), Expect = 4e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + + A LA K C++ ET A NV +FQ+
Sbjct: 125 REVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQE 160
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 37.5 bits (88), Expect = 7e-04
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + + R LA + C + ET A VD +F +
Sbjct: 124 REVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAE 159
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 37.6 bits (88), Expect = 7e-04
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R +D A+ +A + K C++ ET A NV +FQ+
Sbjct: 129 REVDTREAQAVAQEWK-CAFMETSAKMNYNVKELFQE 164
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 37.1 bits (87), Expect = 8e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + A+ A +Y ET A NVD+VF D
Sbjct: 139 RQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFD 174
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 37.1 bits (87), Expect = 9e-04
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + + A + +Y+E A LNVD F+
Sbjct: 130 RQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQ 165
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 37.2 bits (87), Expect = 0.001
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R +D +A LA + ET A V+ F
Sbjct: 141 RTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYT 176
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + A+ A +Y ET A NVD+VF D
Sbjct: 125 RQVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFD 160
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 37.2 bits (87), Expect = 0.001
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + A+ A +Y ET A NVD+VF D
Sbjct: 135 RQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFD 170
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 35.9 bits (83), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 23 FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
FE + S D + ++F A + E DW+ I +
Sbjct: 73 FE--LTSQDRRTYEFTATSPAEARDWVDQISFLL 104
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R ++ +A+ LA Y ET A V+ F
Sbjct: 123 RTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYT 158
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 36.7 bits (86), Expect = 0.001
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R+I + LA ++ E+ A VF+
Sbjct: 127 RVISYEEGKALAESWN-AAFLESSAKENQTAVDVFRR 162
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R +D +A+ LA + ET A VD F
Sbjct: 124 RTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYT 159
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 35.8 bits (83), Expect = 0.001
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
F+ I + + F+AA EERD W+ I + I
Sbjct: 68 VFK--ITTTKQQDHFFQAAFLEERDAWVRDINKAI 100
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 35.8 bits (83), Expect = 0.001
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 12 IILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQS 67
I V Q + FE V + + F EER+DWI+ + + S T+ Q+
Sbjct: 57 ISTVRVQGDNKFE---VVTTQRTFVFRVEKEEERNDWISILLNALKSQSLTSQSQA 109
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 36.4 bits (85), Expect = 0.001
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + ++LA ++ E+ A +F
Sbjct: 145 REVQAVEGKKLAESWG-ATFMESSARENQLTQGIFTK 180
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + R A C + ET A NV +F+
Sbjct: 122 REVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEG 157
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 36.8 bits (85), Expect = 0.001
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 9 EIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSL 60
++ I + I+ D F A ++EE+++W+AA+ S
Sbjct: 301 KVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRST 352
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
I++ D + +AA +ER +WI AIQ
Sbjct: 79 IITADEVHYFLQAATPKERTEWIKAIQMAS 108
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 34.7 bits (80), Expect = 0.002
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 13 ILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
I D F+ +S+++ W A + + R WI AI+Q
Sbjct: 53 ITPHDFDECRFD---ISVNDSVWYLRAQDPDHRQQWIDAIEQHK 93
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 36.2 bits (84), Expect = 0.002
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + + R A C + ET A NV +F+
Sbjct: 161 REVSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEG 196
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 35.3 bits (81), Expect = 0.002
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
+++ D+ + +A++ ER +WI AI++
Sbjct: 94 VITKDDTHYYIQASSKAERAEWIEAIKKLT 123
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + R A C + ET AT NV +F+
Sbjct: 127 REVSVEEGRACAVVFD-CKFIETSATLQHNVAELFEG 162
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 35.1 bits (81), Expect = 0.002
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
I++ D + +AA +ER +WI AIQ
Sbjct: 90 IITADEVHYFLQAATPKERTEWIKAIQMAS 119
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 34.8 bits (80), Expect = 0.003
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
+F+ ++ D + A + E +W+ + Q +
Sbjct: 68 AFQ--VILSDRPCLELSAESEAEMAEWMQHLCQAV 100
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 35.9 bits (82), Expect = 0.003
Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 23 FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
FE I + D + +QF AA+ ++ ++W+ ++ +
Sbjct: 176 FE--ICAPDKRIYQFTAASPKDAEEWVQQLKFIL 207
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + R LA L C + ET A N +F+
Sbjct: 125 REVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEG 160
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 35.3 bits (82), Expect = 0.004
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + R LA L C + ET A N +F+
Sbjct: 146 REVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEG 181
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 34.1 bits (78), Expect = 0.006
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 23 FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTA 63
+ I+ + + EA +SEE W+ + + S +
Sbjct: 67 YSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGSGPSSG 107
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 34.5 bits (79), Expect = 0.006
Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 23 FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
FE I + D + +QF AA+ ++ ++W+ ++ +
Sbjct: 87 FE--ICAPDKRIYQFTAASPKDAEEWVQQLKFIL 118
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 34.0 bits (78), Expect = 0.006
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 32 NKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVP 73
++ + +A + EE WI A+ I++ Q +S S P
Sbjct: 86 SRTFYVQADSPEEMHSWIKAVSGAIVA--QRGPGRSASSEHP 125
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 34.0 bits (78), Expect = 0.006
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 32 NKQWQFEAANSEERDDWIAAIQQQILSSLQTA 63
N+ + F+A + ++ WI+ + +L A
Sbjct: 76 NRTYHFQAEDEQDYVAWISVLTNSKEEALTMA 107
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 34.5 bits (80), Expect = 0.007
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R I + + A + + E A NVD +F
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 182
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 34.9 bits (80), Expect = 0.007
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 8 AEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQS 67
+ I D+ FE+ + + + +A E + W+ AI++ + S LQ S
Sbjct: 277 TAVGITENVKGDTKKFEI-WYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQACREAS 335
Query: 68 IRSRVPGNLTCADC 81
+ + +
Sbjct: 336 QHRALEQSHSLEHH 349
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 33.5 bits (77), Expect = 0.009
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQS 67
+V +K ++ A++ +++ +WI AI I +S S
Sbjct: 73 LVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSSGPS 113
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 33.9 bits (77), Expect = 0.009
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 28 VSLDNKQWQFEAANSEERDDWIAAIQ 53
+ L ++ Q + N+E ++W I
Sbjct: 84 LVLPKEEVQLKTENTESGEEWRGFIL 109
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 34.1 bits (79), Expect = 0.010
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 125 ESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
E + +I+ E A+ LA L + T A +NVD F+
Sbjct: 131 EESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 34.6 bits (79), Expect = 0.010
Identities = 10/72 (13%), Positives = 22/72 (30%)
Query: 17 TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNL 76
T S + +S ++ + N ER W+ I+ + T Q ++ +
Sbjct: 322 TDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTEKKQREKAYQARSQ 381
Query: 77 TCADCAEAGPTW 88
+
Sbjct: 382 KTSGIGRLMVHV 393
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 33.2 bits (76), Expect = 0.013
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 12 IILVGTQDSDS--FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61
I G F + + A E+ W+ A+ + +
Sbjct: 62 IRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGD 113
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 34.2 bits (77), Expect = 0.014
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTAS 64
F++ K +A + ++ ++WI I + +
Sbjct: 341 CFQI-TSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSEN 382
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 32.9 bits (75), Expect = 0.015
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
+ S D ++ + + W AI Q I
Sbjct: 93 LRSRDGSEYLIQHDSEAIISTWHKAIAQGI 122
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 33.5 bits (76), Expect = 0.016
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 12 IILVGTQDSDSFELLIVSLDNKQ-WQFEAANSEERDDWIAAIQQQI 56
I+ + L+ + + + + + A++ EER+ WI IQ I
Sbjct: 126 IVREVAHEEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTI 171
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 32.9 bits (75), Expect = 0.018
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
I ++ ++ ++ + E W A++ I
Sbjct: 94 IRTIPGHEFLLQSDHETELRAWHRALRTVI 123
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 33.5 bits (76), Expect = 0.020
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 37 FEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRV 72
A + EE+++W+ +I+ I L + + R+
Sbjct: 308 ISAPSPEEKEEWMKSIKASISRDPFYDMLATRKRRI 343
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 33.4 bits (76), Expect = 0.020
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R I +A L+ K ET A +NVD F
Sbjct: 214 RYIRDAHTFALSK--KNLQVVETSARSNVNVDLAFST 248
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 32.2 bits (73), Expect = 0.025
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQILSS 59
+ + + +A + E W+ +++ Q S+
Sbjct: 89 VKLANGALFLLQAHDDTEMSQWVTSLKAQSDST 121
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 32.4 bits (74), Expect = 0.025
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 31 DNKQWQFEAANSEERDDWIAAIQQQI 56
++ +AA + W+ +Q +
Sbjct: 78 PSRVITLKAATKQAMLYWLQQLQMKR 103
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 32.2 bits (73), Expect = 0.030
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 37 FEAANSEERDDWIAAIQQQILSSLQ 61
F EER++W AIQ L+
Sbjct: 90 FHVETPEEREEWTTAIQTVA-DGLK 113
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 31.8 bits (72), Expect = 0.037
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQILSS 59
+ D K++ F+A + E W+ + I S
Sbjct: 87 LGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG 119
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 32.3 bits (73), Expect = 0.040
Identities = 8/56 (14%), Positives = 21/56 (37%)
Query: 12 IILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQS 67
+ +V F + D + A + E ++WI + + + + + A +
Sbjct: 79 MGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEK 134
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 31.6 bits (72), Expect = 0.040
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 23 FELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTAS 64
F+ + + F A + EE++ WI A+ + +S
Sbjct: 77 FK--AEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQSGPSS 116
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 31.7 bits (72), Expect = 0.041
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQS 67
+F+ + + + F +E + W+ A+ + +QT+ S
Sbjct: 86 AFK--AAHPNMRTYYFCTDTGKEMELWMKAMLDA--ALVQTSGPSS 127
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 32.2 bits (74), Expect = 0.041
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + A A+ LA ET A NV+ F
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 32.1 bits (74), Expect = 0.046
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + A+ D Y+ET A NV F+
Sbjct: 131 RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 32.7 bits (74), Expect = 0.048
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 10/98 (10%)
Query: 19 DSDSFELLIVSLDNKQW-QFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVP---- 73
S L++ Q + E + W+ + I + + +
Sbjct: 468 KKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHDFQMFSFE 527
Query: 74 GNLTCADCAEAGPTWASLNLGLLLCIQC--CGVHRCLG 109
+C C + G C +C CLG
Sbjct: 528 ETTSCKACQM--LLRGTFYQG-YRCHRCRASAHKECLG 562
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 32.3 bits (73), Expect = 0.049
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 32 NKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGN 75
++ + A + E+ W + + Q S+ Q P N
Sbjct: 130 DRTFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQN 173
Score = 28.8 bits (64), Expect = 0.76
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54
SF ++ N+ A EE WI +Q+
Sbjct: 197 SFVIIT---ANRVLHCNADTPEEMHHWITLLQR 226
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 32.3 bits (74), Expect = 0.051
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R ++E +AR LA Y+ET A G NV++ +
Sbjct: 157 REVNERQARELADKYG-IPYFETSAATGQNVEKAVE 191
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 32.3 bits (73), Expect = 0.053
Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 3/103 (2%)
Query: 2 SHYRNAAEIPIILVGTQDSDSFEL---LIVSLDNKQWQFEAANSEERDDWIAAIQQQILS 58
YR + + + ++ L + A++ ERD+W + + +
Sbjct: 279 GKYRLKNTLAVANMKVSRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPE 338
Query: 59 SLQTASLQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQC 101
+ +L + V P +++C+ C
Sbjct: 339 DYKAQALAAFHHSVEIRERLGVSLGERPPTLVPVTHVMMCMNC 381
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 32.0 bits (73), Expect = 0.053
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 120 LDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
L E + + + E A+ LA ++K SY E A N+ VF
Sbjct: 143 LIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD 187
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 32.5 bits (74), Expect = 0.056
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 19 DSDSFELLIVSLDNKQW-QFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVP---- 73
S L++ Q + E + W+ + I + + +
Sbjct: 296 KKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATANGHDFQMFSFE 355
Query: 74 GNLTCADC 81
+C C
Sbjct: 356 ETTSCKAC 363
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 31.3 bits (71), Expect = 0.056
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 22 SFELLIVSLDNKQWQFEAANSEERDDWIAAIQQ 54
+F+ + + F A + EE++ WI A+ +
Sbjct: 87 TFK--AEHAGVRTYFFSAESPEEQEAWIQAMGE 117
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 31.2 bits (71), Expect = 0.059
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 32 NKQWQFEAANSEERDDWIAAIQQQI 56
+ + A E D+WI ++ ++
Sbjct: 87 FRTFYLCAKTGVEADEWIKILRWKL 111
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 31.5 bits (71), Expect = 0.059
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 31 DNKQWQFEAANSEERDDWIAAIQQQILSSLQTA 63
++++ +A + ++ DW+ A+ Q S +
Sbjct: 94 LSQRYFLQANDQKDLKDWVEALNQASKSGPSSG 126
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 31.8 bits (73), Expect = 0.064
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + E AR LA Y+ET A G N+ +
Sbjct: 143 RAVKEEEARELAEKYG-IPYFETSAANGTNISHAIE 177
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 31.2 bits (70), Expect = 0.064
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 29 SLDNKQWQFEAANSEERDDWIAAIQQQI 56
+L + A EERD W+ + Q +
Sbjct: 100 TLCVTKNWLSADTKEERDLWMQKLNQVL 127
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 31.7 bits (72), Expect = 0.065
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 120 LDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
+++ E I + +A ++ Y E A + VF
Sbjct: 128 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 172
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 31.9 bits (72), Expect = 0.068
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 31 DNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQS 67
+ + ++ E R D++ ++ + + L++
Sbjct: 340 PERVFHLCCSSPESRKDFLKSVHSILRDKHRRQLLKT 376
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 31.1 bits (70), Expect = 0.073
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 37 FEAANSEERDDWIAAIQQQI 56
A + EE+++W+ +I+ I
Sbjct: 100 ISAPSPEEKEEWMKSIKASI 119
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 30.8 bits (70), Expect = 0.077
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 12 IILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS 59
+ LV ++S+S ++ + F+A ++ WI A Q+ +S
Sbjct: 58 VTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSG 105
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 30.9 bits (70), Expect = 0.086
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 32 NKQWQFEAANSEERDDWIAAIQQQI 56
+ + F A + W+ IQ +
Sbjct: 86 RRVYNFCAQDVPSAQQWVDRIQSCL 110
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 32.0 bits (72), Expect = 0.092
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 13 ILVGTQDSDSFELLIVSLDNKQWQ---FEAANSEERDDWIAAIQQQI 56
+ +D ++ +++ Q A ER +W A I +
Sbjct: 477 AMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETA 523
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 30.3 bits (68), Expect = 0.092
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQ 54
+ D ++ F+A + EE + WI AI
Sbjct: 78 LRLSDGNEYLFQAKDDEEMNTWIQAISS 105
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 31.2 bits (71), Expect = 0.093
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 125 ESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
+ + + L L +Y E + + ++ VF+
Sbjct: 141 KDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE 180
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 31.3 bits (71), Expect = 0.099
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 114 RVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R E + + R +A+ + Y E A V VF+
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 31.3 bits (71), Expect = 0.099
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 114 RVRSLELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R L + + I + ++LA ++ C Y E A + VF
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 185
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 31.3 bits (71), Expect = 0.10
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 120 LDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
+++ E I + +A ++ Y E A + VF
Sbjct: 153 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 30.2 bits (68), Expect = 0.11
Identities = 10/62 (16%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 4 YRNAAEIP---IILVGTQDSDSFE-LLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSS 59
YR A P + +V +D+ + + + + + F+A N++ + +W+ +++ +
Sbjct: 50 YRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRAL 109
Query: 60 LQ 61
Sbjct: 110 SD 111
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 30.4 bits (68), Expect = 0.11
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 32 NKQWQFEAANSEERDDWIAAIQQQILSS 59
W F+A + E W ++ +S
Sbjct: 93 GHNWVFKADSYESMMSWFDNLKILTSTS 120
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 30.9 bits (71), Expect = 0.12
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
I A LA LK +Y T LNV VF+
Sbjct: 125 SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFK 159
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 30.9 bits (70), Expect = 0.12
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 120 LDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
E + R +A ++ Y E A V VF+
Sbjct: 148 RTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 31.3 bits (71), Expect = 0.13
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 19 DSDSFELLIVSLDNKQWQFE--AANSEERDDWIAAIQQQI 56
D +F ++ S +E A S +++ W+ +++ +
Sbjct: 326 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAV 365
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 30.6 bits (70), Expect = 0.13
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + + R +LA D + ET A +NV+ F
Sbjct: 129 RQVSKERGEKLALDYG-IKFMETSAKANINVENAFF 163
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 31.0 bits (70), Expect = 0.13
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 13 ILVGTQDSDSFELLIVSLDNKQWQ---FEAANSEERDDWIAAIQQQI 56
+ +D ++ +++ Q A ER +W A I +
Sbjct: 324 AMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETA 370
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 30.7 bits (70), Expect = 0.14
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R++ R R+LA L ++E A +NV + F+
Sbjct: 129 RVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 163
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 30.6 bits (70), Expect = 0.14
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R++ + LA +L + E+ A NV+ +F
Sbjct: 123 RVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFF 157
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 30.6 bits (70), Expect = 0.14
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R++ RRLA DL ++E A +NV +VF+
Sbjct: 143 RVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFE 177
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 30.1 bits (68), Expect = 0.14
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 31 DNKQWQFEAANSEERDDWIAAIQQQI 56
+ A++ E ++W+ +++
Sbjct: 86 GQDSYVLMASSQAEMEEWVKFLRRVA 111
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 30.9 bits (70), Expect = 0.14
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 120 LDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVF 163
+++ + + R + +A + +Y E A NV VF
Sbjct: 157 VNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 30.7 bits (70), Expect = 0.15
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R++ + + LA L ++E A ++V + F+
Sbjct: 144 RVVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFE 178
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 31.0 bits (70), Expect = 0.16
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 19 DSDSFELLIVSLDNKQWQFE--AANSEERDDWIAAIQQQI 56
D +F ++ S +E A S +++ W+ +++ +
Sbjct: 368 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAV 407
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 30.6 bits (70), Expect = 0.16
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R++ +LA + + ET A GLNVD F
Sbjct: 132 RVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFT 166
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 30.4 bits (69), Expect = 0.18
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R++ + LA +L + E+ A NV+ +F
Sbjct: 140 RVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFF 174
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 30.2 bits (69), Expect = 0.18
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
++++ A + A + +ET A +NV+ +F
Sbjct: 129 KVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFN 163
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 30.3 bits (69), Expect = 0.19
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 121 DEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
D + + +LA + ET A G N+
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVL 189
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 30.3 bits (69), Expect = 0.19
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
+++D A+ A L + ET A NV++ F
Sbjct: 154 KVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFM 188
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 30.5 bits (69), Expect = 0.19
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 19 DSDSFELLIVSLDNKQWQFE--AANSEERDDWIAAIQQQIL 57
D F L + + A++ E + DWI I++ I
Sbjct: 268 DPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQ 308
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 30.7 bits (69), Expect = 0.20
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 16 GTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
++F L + E++ W+ A ++
Sbjct: 400 HVSIKNAFRLHRGATG-DSHLLCTRKPEQKQRWLKAFARER 439
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 30.0 bits (67), Expect = 0.21
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 8 AEIPIILVGTQDSDSFELLIVSLD-NKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQ 66
E+ + + +LL+ S + + + ++ W+A + S +T +
Sbjct: 62 CEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLA--SKGRTMADS 119
Query: 67 SIRSRVPGNLTC 78
S S V L
Sbjct: 120 SYTSEVQAILAF 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 30.4 bits (69), Expect = 0.21
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 125 ESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
+ +I + L + +Y E + NV VF
Sbjct: 133 ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 30.5 bits (69), Expect = 0.25
Identities = 6/53 (11%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 5 RNAAEIPIILVGTQDSDSFELLIVSLDNKQW-QFEAANSEERDDWIAAIQQQI 56
+ + + F + + Q +A ++ + W+ I+Q
Sbjct: 293 LGGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 30.2 bits (68), Expect = 0.25
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 32 NKQWQFEAANSEERDDWIAAIQQQI 56
+ F A EE+ W+ A +++
Sbjct: 338 EEVHLFFAKKLEEKIRWLRAFREER 362
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 29.9 bits (68), Expect = 0.26
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
+++D A+ A L + ET A NV++ F
Sbjct: 137 KVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFM 171
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 30.0 bits (68), Expect = 0.26
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 127 NPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + + R A + ET A NV +F+
Sbjct: 128 RXREVSVSEGRAXAVVFDX-KFIETSAAVQHNVKELFEG 165
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 30.2 bits (68), Expect = 0.27
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 13 ILVGTQDSDSFELLIVSLDN---KQWQFEAANSEERDDWIAAIQQQI 56
+LV +D+ L ++S+ + + ++ A E+ W I +
Sbjct: 322 VLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMA 368
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 30.2 bits (68), Expect = 0.27
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 19 DSDSFELLIVSLDN--KQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRS 70
D F L + +++ +AA+ WI + Q + S Q L +++S
Sbjct: 278 DPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES--QRDFLNALQS 329
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 30.0 bits (67), Expect = 0.29
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 120 LDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
+++ E I + +A ++ Y E A + VF
Sbjct: 278 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.29
Identities = 24/163 (14%), Positives = 38/163 (23%), Gaps = 57/163 (34%)
Query: 13 ILVGTQDSDSFELLI------VSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQ 66
IL+ T+ + L +SLD+ + +L Q
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----------LLLKYLDCRPQ 316
Query: 67 SIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPES 126
+ V P L I + + R D W
Sbjct: 317 DLPREVLTT---------NP--------RRLSI--------IAESI-RDGLATWDNWKHV 350
Query: 127 N----PRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
N II E+ L R ++ + VF
Sbjct: 351 NCDKLTTII-ESSLNVLEPAEYR-KMFDRLS--------VFPP 383
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 29.3 bits (65), Expect = 0.31
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 37 FEAANSEERDDWIAAIQQQILSS 59
A + + W+ A++ + S
Sbjct: 104 IRATSESDGRCWMDALELALKSG 126
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 29.2 bits (65), Expect = 0.32
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 31 DNKQWQFEAANSEERDDWIAAIQQ 54
D +Q + EE D W A+ +
Sbjct: 91 DYRQLELACETQEEVDSWKASFLR 114
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 29.6 bits (67), Expect = 0.34
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R+++ A+ A K + ET A NV+ F
Sbjct: 129 RVVEYDVAKEFADANK-MPFLETSALDSTNVEDAFL 163
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 29.3 bits (65), Expect = 0.34
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 28 VSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTC 78
V D A + + RD W+ ++++I ++ + G+ C
Sbjct: 92 VVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNNIMIKYHPKFWTDGSYQC 142
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 30.0 bits (68), Expect = 0.34
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G HRC G H++R +E+ + E +R+
Sbjct: 360 GPHRCAGMHLAR---MEV--------IVTLEEWLKRI 385
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 29.5 bits (67), Expect = 0.35
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + A R A + + + ET A G NV+ F
Sbjct: 131 REVTFLEASRFAQENE-LMFLETSALTGENVEEAFV 165
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 30.0 bits (68), Expect = 0.35
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G H+CLG H++R LE+ R++ + R+
Sbjct: 395 GSHQCLGLHLAR---LEM--------RVLLDVLLDRV 420
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 29.9 bits (68), Expect = 0.36
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRLAS 141
G+HRC+G ++ ++L RI+ E R +
Sbjct: 372 GIHRCVGNRLAE---MQL--------RILWEEILTRFSR 399
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 30.0 bits (68), Expect = 0.37
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G HRC G H++R LE+ ++ + R+
Sbjct: 361 GPHRCAGMHLAR---LEV--------TVMLQEWLARI 386
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 29.5 bits (67), Expect = 0.38
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + + RA + Y ET A NV+++F D
Sbjct: 147 REVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLD 182
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 29.6 bits (67), Expect = 0.41
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G H CLG H+++ LE+ +I E +L
Sbjct: 373 GAHMCLGQHLAK---LEM--------KIFFEELLPKL 398
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 29.3 bits (66), Expect = 0.41
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 125 ESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
I + L + +Y E + NV VF
Sbjct: 134 HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 29.1 bits (66), Expect = 0.44
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R +D + A + E A V F++
Sbjct: 136 REVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEE 171
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 29.1 bits (66), Expect = 0.45
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + A R A + + + ET A G NV+ F
Sbjct: 146 REVTFLEASRFAQENE-LMFLETSALTGENVEEAFL 180
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 28.7 bits (64), Expect = 0.46
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 32 NKQWQFEAANSEERDDWIAAIQQQILSSLQTAS 64
F + + ++R W+ A+ + S +
Sbjct: 85 GDTVIFASDDEQDRILWVQAMYRATGQSHKPVP 117
>2ida_A Hypothetical protein; zinc binding protein, structural genomics,
PSI-2, protein structure initiative; NMR
{Rhodopseudomonas palustris} SCOP: g.44.1.5
Length = 102
Score = 28.4 bits (63), Expect = 0.50
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 16/70 (22%)
Query: 65 LQSIRSRVPGNLTCADCAEAGPTWASLNLGLLLCIQC----CG---VHRCLGAHVSR--- 114
+ IR+ P L C +C + G W L +C C C H+ H
Sbjct: 8 VAGIRTVTPSALGCEECLKIGSPWV----HLRICRTCGHVGCCDDSPHKHATRHFHATGH 63
Query: 115 --VRSLELDE 122
+ + E
Sbjct: 64 PIIEGYDPPE 73
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 29.2 bits (66), Expect = 0.50
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
+ I + + K Y+E A N F
Sbjct: 133 QKISKKLVMEVLKG-KNYEYFEISAKTAHNFGLPFL 167
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 29.6 bits (67), Expect = 0.51
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G H CLGA+++R E+ R+ + R++
Sbjct: 382 GAHFCLGANLAR---REI--------RVAFDELRRQM 407
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 29.6 bits (67), Expect = 0.51
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G H CLG H++R E+
Sbjct: 354 GSHLCLGQHLAR---REI 368
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 29.2 bits (66), Expect = 0.56
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G H C+GA+++R + + +I A A +
Sbjct: 373 GAHYCIGANLAR---MTI--------NLIFNAVADHM 398
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 29.1 bits (66), Expect = 0.59
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G+HRCLGAH+ R +E R+ +R+
Sbjct: 337 GIHRCLGAHLIR---VEA--------RVAITEFLKRI 362
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 28.6 bits (64), Expect = 0.59
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 119 ELDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
++D E R + +LA + ++ET A G NV+ VF
Sbjct: 117 KIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFL 161
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 29.2 bits (66), Expect = 0.67
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G+H CLG+ ++R +EL ++ A R+
Sbjct: 360 GMHHCLGSALAR---IEL--------SVVLRVLAERV 385
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 28.5 bits (63), Expect = 0.68
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 18/83 (21%)
Query: 2 SHYRNAAEIPIILVG--------TQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQ 53
HY++ + +VG + D F+L N ++F+ + W +
Sbjct: 50 KHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQLNNPDKGN-VYKFQTGSRFHAILWHKHLD 108
Query: 54 QQILSSLQTASLQSIRSRVPGNL 76
+S R +VP NL
Sbjct: 109 DAC---------KSSRPQVPANL 122
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 28.6 bits (64), Expect = 0.71
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
+D ++ A D + +T A G N+ +F
Sbjct: 162 FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFY 196
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 28.3 bits (64), Expect = 0.78
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + A++ A + + E A G NV+ F
Sbjct: 136 RDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFL 170
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 28.7 bits (65), Expect = 0.79
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G HRC+GA ++R +E+
Sbjct: 341 GAHRCVGAGLAR---MEV 355
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 28.3 bits (64), Expect = 0.80
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + AR A S+ ET A NV+ FQ
Sbjct: 150 RAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQ 184
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 28.4 bits (64), Expect = 0.95
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + AR A S+ ET A NV+ F+
Sbjct: 126 RAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFK 160
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding,
recombination,replication; 2.00A {Deinococcus
radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Length = 244
Score = 28.3 bits (63), Expect = 1.0
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 78 CADCAEAGPTWASLNLGLLLCIQC 101
CA C P G LLC +C
Sbjct: 153 CARCGAPDPEHPDPLGGQLLCSKC 176
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 28.3 bits (64), Expect = 1.0
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + A + + ET A NV+ F
Sbjct: 142 RDVKREEGEAFAREHG-LIFMETSAKTACNVEEAFI 176
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 28.2 bits (62), Expect = 1.0
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 28 VSLDNKQWQFEAANSEERDDWIAAIQQQI 56
++ + + F+A + ++ WI IQ+
Sbjct: 82 LTTSDCECLFQAEDRDDMLAWIKTIQESS 110
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 28.0 bits (63), Expect = 1.0
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + AR A + + ET A NV+ F+
Sbjct: 146 REVPTEEARMFAENNG-LLFLETSALDSTNVELAFE 180
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 28.3 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G+H CLGA ++R LE RI E A++
Sbjct: 313 GIHLCLGAPLAR---LEA--------RIALEEFAKKF 338
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 28.3 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G+H CLGA ++R LE RI E ++R
Sbjct: 313 GIHLCLGAPLAR---LEA--------RIAIEEFSKRF 338
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 27.9 bits (63), Expect = 1.3
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R I + R + S + A G +V FQ
Sbjct: 131 RTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQ 165
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 28.0 bits (63), Expect = 1.5
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
GVH+C+G H++R LEL
Sbjct: 356 GVHQCVGQHLAR---LEL 370
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 28.0 bits (63), Expect = 1.5
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G H+CLG +++R +EL
Sbjct: 352 GPHQCLGQNLAR---MEL 366
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 28.0 bits (63), Expect = 1.5
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G H C G+ + R
Sbjct: 341 GQHFCPGSALGR---RHA 355
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 28.0 bits (63), Expect = 1.6
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G HRC+ H+++ EL
Sbjct: 349 GDHRCIAEHLAK---AEL 363
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 28.0 bits (63), Expect = 1.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 103 GVHRCLGAHVSRV 115
G H C GA +SR+
Sbjct: 351 GPHVCPGAALSRM 363
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 27.5 bits (62), Expect = 1.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + R A +L + ET A G NV ++F+
Sbjct: 135 RQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFR 169
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 28.0 bits (63), Expect = 1.7
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 103 GVHRCLGAHVSRV 115
G+ C+GA ++R+
Sbjct: 349 GIWHCIGAPLARL 361
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 27.6 bits (60), Expect = 1.7
Identities = 9/51 (17%), Positives = 14/51 (27%)
Query: 28 VSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTC 78
V D + E R WI ++ I + + G C
Sbjct: 103 VVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDLVQKYHPCFWIDGQYLC 153
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 28.0 bits (63), Expect = 1.7
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G H+C+G ++R +EL
Sbjct: 344 GAHQCIGQQLAR---IEL 358
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + A A + +Y T A ++ +F D
Sbjct: 127 RHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLD 162
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 27.6 bits (62), Expect = 1.9
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G H C GA ++R ++
Sbjct: 352 GHHFCTGAVLAR---MQT 366
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 27.6 bits (62), Expect = 1.9
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G+H+CLG +++R EL
Sbjct: 349 GIHQCLGQNLAR---AEL 363
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 27.6 bits (62), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
GVH CLGA ++R +E+
Sbjct: 350 GVHFCLGAPLAR---MEV 364
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 27.6 bits (60), Expect = 1.9
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQI 56
+ + + F+A + + ++W+ AI
Sbjct: 94 LSNSCGDVYLFQATSQTDLENWVTAIHSAC 123
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 27.6 bits (62), Expect = 2.0
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
GVH CLGA ++R LEL
Sbjct: 343 GVHHCLGAALAR---LEL 357
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 27.6 bits (62), Expect = 2.0
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 13/36 (36%)
Query: 103 GVHRCLGAH-------------VSRVRSLELDEWPE 125
GVH C+G +V ++E+ +
Sbjct: 357 GVHMCVGQLVARLEGEVVLAALARKVAAIEIAGPLK 392
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 27.6 bits (62), Expect = 2.0
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G H C G ++R LE
Sbjct: 349 GPHYCPGGMLAR---LES 363
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 27.6 bits (62), Expect = 2.0
Identities = 9/42 (21%), Positives = 10/42 (23%), Gaps = 13/42 (30%)
Query: 103 GVHRCLGAH-------------VSRVRSLELDEWPESNPRII 131
G H C G R +EL E P
Sbjct: 341 GPHSCAGQIISRAEATTVFAVLAERYERIELAEEPTVAHNDF 382
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 27.6 bits (62), Expect = 2.0
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G+H C+GA ++R L
Sbjct: 352 GIHYCVGAALAR---SML 366
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 27.6 bits (62), Expect = 2.1
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
GVH CLGA ++R +EL
Sbjct: 362 GVHHCLGAPLAR---VEL 376
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 27.6 bits (62), Expect = 2.1
Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 13/40 (32%)
Query: 103 GVHRCLGAH-------------VSRVRSLELDEWPESNPR 129
G H CLG + R+ L L P
Sbjct: 336 GTHFCLGNQLARLELSLMTERVLRRLPDLRLVADDSVLPL 375
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 27.6 bits (62), Expect = 2.2
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
GVH+CLG +++R LEL
Sbjct: 351 GVHQCLGQNLAR---LEL 365
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 27.6 bits (62), Expect = 2.4
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G+H C+GA ++R L+L
Sbjct: 328 GIHHCIGAPLAR---LQL 342
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 27.0 bits (60), Expect = 2.5
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + ++ A + + + ET A NVD+ F+
Sbjct: 134 RAVPTEESKTFAQENQ-LLFTETSALNSENVDKAFE 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.5
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 22/63 (34%)
Query: 116 RSLELDEW---PESNPRIIDEARARRLAS-----------DLKRCSYYETCATYGLNVDR 161
+ L + EW P + P D+ L S L Y T G
Sbjct: 211 QGLNILEWLENPSNTP---DKDY---LLSIPISCPLIGVIQL--AHYVVTAKLLGFTPGE 262
Query: 162 VFQ 164
+
Sbjct: 263 LRS 265
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 27.2 bits (59), Expect = 2.5
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 27 IVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTAS 64
+ + + F+ + E ++WI AI +++
Sbjct: 94 LSNSLGDAFLFQTTSQTELENWITAIHSACAAAVARHH 131
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 26.8 bits (58), Expect = 2.7
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 31 DNKQWQFEAANSEERDDWIAAIQQ 54
+ ++ E +S ++ W+A IQ
Sbjct: 104 NGAEYILETIDSLQKHSWVADIQG 127
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 11/37 (29%)
Query: 103 GVHRCLGAHVSRVRSLELDEWPESNPRIIDEARARRL 139
G+H CLGA ++R LE I
Sbjct: 291 GIHMCLGAPLAR---LEA--------SIALNDILNHF 316
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 27.0 bits (60), Expect = 2.7
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 120 LDEWPESNPRIIDEARARRLASDLKRCSYYETCATYGLN-VDRVFQ 164
L E + + +A + +Y E A N V +F
Sbjct: 130 LVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 175
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 127
Score = 26.6 bits (58), Expect = 2.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 36 QFEAANSEERDDWIAAIQQ 54
AA + ER DW+ AI
Sbjct: 100 YLLAAPAAERGDWVQAICL 118
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 26.8 bits (60), Expect = 2.9
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + A+ A + ET A +N++ +FQ
Sbjct: 144 REVPLKDAKEYAESIG-AIVVETSAKNAINIEELFQG 179
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 27.2 bits (61), Expect = 3.0
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 103 GVHRCLGAHVSRV 115
G+H C+GA ++R+
Sbjct: 370 GIHFCIGAPLARL 382
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 26.9 bits (60), Expect = 3.0
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + R A +L + ET A G NV ++F+
Sbjct: 137 RQVSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 172
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 26.9 bits (60), Expect = 3.1
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 16/52 (30%)
Query: 103 GVHRCLGAH-------------VSRVRSLELDEWPESNPRIIDEARARRLAS 141
G H CLGA ++R E+ ES + RR S
Sbjct: 357 GAHHCLGAAAARMQCRVALTELLARCPDFEVA---ESRIVWSGGSYVRRPLS 405
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 27.2 bits (61), Expect = 3.2
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G+H C+G +++ LE
Sbjct: 347 GIHFCMGRPLAK---LEG 361
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 26.8 bits (60), Expect = 3.4
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G+H CLGA ++R LE
Sbjct: 343 GIHFCLGAQLAR---LEG 357
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 26.9 bits (60), Expect = 3.6
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 13/42 (30%)
Query: 103 GVHRCLGAH-------------VSRVRSLELDEWPESNPRII 131
G H CLGA +R L PE +
Sbjct: 362 GAHFCLGAPLARLEATVALPALAARFPEARLSGEPEYKRNLT 403
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 26.9 bits (59), Expect = 3.8
Identities = 4/40 (10%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 125 ESNPRIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
E+ I++ + + ++ G V+ + +
Sbjct: 162 ENPSYNIEQKKINERFPAI-ENRFHRISCKNGDGVESIAK 200
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 26.3 bits (59), Expect = 4.0
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + E A+ A + + ET A +N++ +F +
Sbjct: 127 REVMERDAKDYADSIH-AIFVETSAKNAININELFIE 162
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 26.8 bits (60), Expect = 4.2
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 13/36 (36%)
Query: 103 GVHRCLGAH-------------VSRVRSLELDEWPE 125
GVH CLGA ++R L +D E
Sbjct: 349 GVHFCLGAPLARLENRVALEEIIARFGRLTVDRDDE 384
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 26.5 bits (59), Expect = 4.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQ 164
R + RA+ Y+ET A +NV++ FQ
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ 167
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 26.5 bits (59), Expect = 4.4
Identities = 8/42 (19%), Positives = 10/42 (23%), Gaps = 13/42 (30%)
Query: 103 GVHRCLGAH-------------VSRVRSLELDEWPESNPRII 131
G H C G R ++L E P
Sbjct: 361 GPHVCPGVSLARLEAEIAVGTIFRRFPEMKLKETPVFGYHPA 402
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 26.6 bits (59), Expect = 4.7
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 90 SLNLGLLLCIQCCGVHRCLGAHVSRVRSLELDEWPESNPRIIDEARA 136
+ L L + G++ V+ V ++ + P R+ D
Sbjct: 183 AFQQRLYLVVVGTGINASTAKVVNDVHKMK-QQQPVQFKRLYDNYTH 228
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 25.8 bits (56), Expect = 4.8
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 37 FEAANSEERDDWIAAIQQQIL 57
A ++EE+ W++ + ++I
Sbjct: 95 LLANSTEEQQKWVSRLVKKIP 115
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 26.5 bits (59), Expect = 4.9
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 13/33 (39%)
Query: 103 GVHRCLGAH-------------VSRVRSLELDE 122
G+H C+G + ++R++ L+E
Sbjct: 385 GIHNCVGTAFAKNEIEIVANIVLDKMRNIRLEE 417
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 26.4 bits (57), Expect = 5.1
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 25 LLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQTASLQSIRSRVPGNLTCADCAEA 84
L+ + ++ + A + E+D W A+ Q + + G +C+ +
Sbjct: 80 LVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDGAAALGAGGGGGSCSGSSGL 139
Query: 85 GPTWASLNLG 94
G L+ G
Sbjct: 140 GEAGEDLSYG 149
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 26.0 bits (58), Expect = 5.1
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R + A+ A + + ET A NV +F +
Sbjct: 133 RKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYE 168
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 25.9 bits (58), Expect = 5.6
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 129 RIIDEARARRLASDLKRCSYYETCATYGLNVDRVFQD 165
R +D A+ A D + ET A +NV+ +F
Sbjct: 127 RAVDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMA 162
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 25.5 bits (55), Expect = 5.6
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 11 PIILVGTQDSDSFELLIVSLDNKQWQFE-AANS-EERDDWIAAIQQ 54
+ ++ SF ++ E A + EE +W +I++
Sbjct: 71 VVKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIRE 116
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
genomics, structural genomics consortium, SGC; 2.39A
{Homo sapiens}
Length = 140
Score = 25.8 bits (56), Expect = 5.8
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 15/68 (22%)
Query: 2 SHYRNAAEIPIILVGTQDSDSFELLIVSLDNKQWQFEAANSEERDDWIAAIQQQILSSLQ 61
+Y N I L + ++LI F A N ++R + +++ I +
Sbjct: 79 QYYPNG----IRLTSSVPGADIKVLIN--------FNAPNPQDRKKFTDDLRESI---AE 123
Query: 62 TASLQSIR 69
++ R
Sbjct: 124 VQEMEKHR 131
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 26.1 bits (58), Expect = 5.8
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G H CLG ++R LEL
Sbjct: 361 GPHFCLGTALAR---LEL 375
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 26.2 bits (58), Expect = 5.9
Identities = 1/13 (7%), Positives = 2/13 (15%)
Query: 103 GVHRCLGAHVSRV 115
H +
Sbjct: 328 RGHPGRLEELVTA 340
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 26.0 bits (58), Expect = 6.7
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G+ CLG++++R +L
Sbjct: 339 GMRYCLGSYLAR---TQL 353
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 25.7 bits (57), Expect = 8.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 103 GVHRCLGAHVSRV 115
G H CLG+ ++R+
Sbjct: 340 GHHVCLGSSLARL 352
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 25.7 bits (57), Expect = 9.8
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 103 GVHRCLGAHVSRVRSLEL 120
G+H CLGA ++R E
Sbjct: 360 GIHYCLGATLAR---AEA 374
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 25.4 bits (56), Expect = 9.8
Identities = 5/50 (10%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 120 LDEWPESNPRIIDEARARRLASDLK----RCSYYETCATYGLNVDRVFQD 165
LD E + + L + R ++ + ++ +
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.411
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,483,952
Number of extensions: 130206
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 236
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)