BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17775
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TO8|A Chain A, Crystal Structure Of The Two C-Terminal Rrm Domains Of
Heterogeneous Nuclear Ribonucleoprotein L (Hnrnp L)
Length = 218
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G++L V
Sbjct: 26 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKLNV 80
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 81 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 139
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 140 EVTEENFFEI 149
>pdb|3TYT|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein L (Hnrpl) From Mus Musculus At 1.60 A
Resolution
Length = 205
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G+++ V
Sbjct: 20 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKMNV 74
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 75 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 133
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 134 EVTEENFFEI 143
>pdb|3S01|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein L (Hnrpl) From Mus Musculus At 2.15 A
Resolution
Length = 212
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G V+ D + +RA+ +L+ G++ V SKQ + Y L DGS S+KDF
Sbjct: 43 GAAXVEXADGYAVDRAITHLNNNFXF-GQKXNVCVSKQPAIXP-GQSYGLEDGSCSYKDF 100
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+ SR NRF P+ A KNRIQ PS +LHFFNAP ++TEE +I
Sbjct: 101 SESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEI 143
>pdb|2ADC|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd34 Complexed With Cucucu Rna
pdb|2EVZ|A Chain A, Structure Of Rna Binding Domains 3 And 4 Of Polypyrimidine
Tract Binding Protein
Length = 229
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+
Sbjct: 75 ALVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSKH---QNVQLPREGQEDQGLTKDYGN 130
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
S +RF P I PPS LH N PP ++EE L
Sbjct: 131 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 168
>pdb|1QM9|A Chain A, Nmr, Representative Structure
Length = 198
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+
Sbjct: 44 ALVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSKH---QNVQLPREGQEDQGLTKDYGN 99
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
S +RF P I PPS LH N PP ++EE L
Sbjct: 100 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 137
>pdb|2E5I|A Chain A, Solution Structure Of Rna Binding Domain 2 In
Heterogeneous Nuclear Ribonucleoprotein L-Like
Length = 124
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 101 PTRLNVIRNDNDSWDYTKPYLGR 123
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 411 YNQFIKGLDSFSGKPRG-SGPPAGP 434
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 411 YNQFIKGLDSFSGKPRG-SGPPAGP 434
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 411 YNQFIKGLDSFSGKPRG-SGPPAGP 434
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 411 YNQFIKGLDSFSGKPRG-SGPPAGP 434
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 411 YNQFIKGLDSFSGKPRG-SGPPAGP 434
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 411 YNQFIKGLDSFSGKPRG-SGPPAGP 434
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 411 YNQFIKGLDSFSGKPRG-SGPPAGP 434
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 411 YNQFIKGLDSFSGKPRG-SGPPAGP 434
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 411 YNQFIKGLDSFSGKPRG-SGPPAGP 434
>pdb|4I96|A Chain A, Crystal Structure Of The N-terminal Two Domains Of The
Skeletal Muscle Ryanodine Receptor (rabbit Ryr1)
Residues 217-536
Length = 320
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 80 YNSPV--LDKFIGKPRGMSGPPSGP 102
YN + LD F GKPRG SGPP+GP
Sbjct: 195 YNQFIKGLDSFSGKPRG-SGPPAGP 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,533,200
Number of Sequences: 62578
Number of extensions: 191101
Number of successful extensions: 401
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 18
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)