BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17775
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 116 bits (291), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 113/237 (47%), Gaps = 41/237 (17%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTK------------DGPPS-------RPGPLLPEPPR 44
PT+LNV +ND++SWDYT+P LGR D P S GPLLP P R
Sbjct: 293 PTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSR 352
Query: 45 RLPTPSGPPSMPNY----------RGGYPDDDYYGAPPAFEFE----RSYNSPVLDKFIG 90
P + Y GG P + + R +N L I
Sbjct: 353 YRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIE 412
Query: 91 KPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDV-SH 149
K + M P G +V+MGD + ERA+ +L+ L GKRL V SKQ S V S
Sbjct: 413 KVKFMKTIP----GTALVEMGDEYAVERAVTHLNNVKL-FGKRLNVCVSKQ--HSVVPSQ 465
Query: 150 PYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+EL DG+ S+KDF S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 466 IFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 522
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 112/237 (47%), Gaps = 41/237 (17%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTKDGPPSR-------------------PGPLLPEPPR 44
PT+LNV +ND++SWDYT+P LGR G + GPLLP P R
Sbjct: 244 PTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSR 303
Query: 45 RLPTPSGPPSMPNY----------RGGYPDDDYYGAPPAFEFE----RSYNSPVLDKFIG 90
P + Y GG P + + R +N L I
Sbjct: 304 YRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIE 363
Query: 91 KPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDV-SH 149
K + M P G +V+MGD + ERA+ +L+ L GKRL V SKQ S V S
Sbjct: 364 KVKFMKTIP----GTALVEMGDEYAVERAVTHLNNVKL-FGKRLNVCVSKQ--HSVVPSQ 416
Query: 150 PYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+EL DG+ S+KDF S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 417 IFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 473
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 117/260 (45%), Gaps = 62/260 (23%)
Query: 2 SAPTKLNVYKNDSESWDYTQPTLGRTKDGPPSRPG------PLLPEPPRRLPTPSG---- 51
+ PT+LNV+KND ++WDYT P L D P S P PLL + P P G
Sbjct: 268 AKPTRLNVFKNDQDTWDYTNPNLSGQGD-PGSNPNKRQRQPPLLGDHPAEYGGPHGGYHS 326
Query: 52 --------------------PPSMPNYRG--------GY-----------PDDD-----Y 67
PP + RG G+ P D
Sbjct: 327 HYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMV 386
Query: 68 YGAPPA-FEFERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKT 126
YG + +R +N L + K + M P G MV+M D + +RA+ +L+
Sbjct: 387 YGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNN 442
Query: 127 LLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPS 186
+ G++L V SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS
Sbjct: 443 FMF-GQKLNVCVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPS 500
Query: 187 QLLHFFNAPPDITEEQLTDI 206
+LHFFNAP ++TEE +I
Sbjct: 501 NVLHFFNAPLEVTEENFFEI 520
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 116/260 (44%), Gaps = 62/260 (23%)
Query: 2 SAPTKLNVYKNDSESWDYTQPTLGRTKDGPPSRPG------PLLPEPPRRLPTPSG---- 51
+ PT+LNV+KND ++WDYT P L D P S P PLL + P P G
Sbjct: 265 AKPTRLNVFKNDQDTWDYTNPNLSGQGD-PGSNPNKRQRQPPLLGDHPAEYGGPHGGYHS 323
Query: 52 --------------------PPSMPNYRG-------------GYPDDDY----------- 67
PP + RG P DY
Sbjct: 324 HYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMV 383
Query: 68 YGAPPA-FEFERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKT 126
YG + +R +N L + K + M P G MV+M D + +RA+ +L+
Sbjct: 384 YGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNN 439
Query: 127 LLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPS 186
+ G+++ V SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS
Sbjct: 440 FMF-GQKMNVCVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPS 497
Query: 187 QLLHFFNAPPDITEEQLTDI 206
+LHFFNAP ++TEE +I
Sbjct: 498 NVLHFFNAPLEVTEENFFEI 517
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
+VQM D A+ AM +LS L GK L SK V P E + KDF+
Sbjct: 369 ALVQMADASQAQLAMNHLSGQRLY-GKVLRATLSKH---QAVQLPREGQEDQGLTKDFSN 424
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S +RF P I PPS LH N PP +T + L ++
Sbjct: 425 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 15/101 (14%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQMGD AE A+ L +L GKRL V +SK HP P G++S D+ S
Sbjct: 286 LVQMGDGFQAELAVHFLKGAMLF-GKRLEVNFSK--------HPNITP-GTDS-HDYVNS 334
Query: 167 RKNRFMNPKMAMKNR--IQPPSQLLHFFNAPPDITEEQLTD 205
NRF + A KN P++++H P D+TEE++ +
Sbjct: 335 NLNRF--NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMN 373
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
+VQM D A+ AM +LS L GK L SK V P E + KDF+
Sbjct: 398 ALVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKH---QAVQLPREGQEDQGLTKDFSN 453
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S +RF P I PPS LH N PP +T + L ++
Sbjct: 454 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 494
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
+VQM D A+ AM +LS L GK L SK V P E + KDF+
Sbjct: 369 ALVQMADASQAQIAMNHLSGQRLY-GKVLRATLSKH---QAVQLPREGQEDQGLTKDFSN 424
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S +RF P I PPS LH N PP +T + L ++
Sbjct: 425 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+
Sbjct: 403 ALVQMADGSQAQLAMSHLNGHKL-HGKPVRITLSKH---QNVQLPREGQEDQGLTKDYGN 458
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
S +RF P I PPS LH N PP I+EE L
Sbjct: 459 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDL 496
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
++QM D ++ AM +L+ + GK + V SK V P E D KDF
Sbjct: 378 ALIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGN 433
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
S +RF P I PPS LH N PP + EE L + T
Sbjct: 434 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
++QM D ++ AM +L+ + GK + V SK V P E D KDF
Sbjct: 378 ALIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGN 433
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
S +RF P I PPS LH N PP + EE L + T
Sbjct: 434 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
++QM D ++ AM +L+ + GK + V SK V P E D KDF
Sbjct: 378 ALIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGN 433
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
S +RF P I PPS LH N PP + EE L + T
Sbjct: 434 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+
Sbjct: 377 ALVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSKH---QNVQLPREGQEDQGLTKDYGN 432
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
S +RF P I PPS LH N PP ++EE L
Sbjct: 433 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 470
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
+V+M D A+ AM +L+ L +GK + + SK V P E + KD+
Sbjct: 401 ALVEMADGSQAQLAMSHLNGHKL-HGKSVRITLSKH---QSVQLPREGQEDQGLTKDYGS 456
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S +RF P I PPS LH N PP ++E+ L +
Sbjct: 457 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSL 497
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 106 CMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165
+VQM D A+ AM +L+ L +GK + + SK V P E + KD+
Sbjct: 377 ALVQMADGSQAQLAMSHLNGHKL-HGKPVRITLSKH---QSVQLPREGQEDQGLTKDYGN 432
Query: 166 SRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
S +RF P I PPS LH N PP I+E+ L
Sbjct: 433 SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDL 470
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,383,641
Number of Sequences: 539616
Number of extensions: 5102501
Number of successful extensions: 19832
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 374
Number of HSP's that attempted gapping in prelim test: 16000
Number of HSP's gapped (non-prelim): 3671
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)