Query psy17775
Match_columns 211
No_of_seqs 149 out of 282
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:39:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1456|consensus 100.0 7.8E-56 1.7E-60 403.8 16.8 199 1-211 195-431 (494)
2 KOG1190|consensus 100.0 3.3E-43 7.2E-48 323.4 13.6 195 1-211 224-439 (492)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-32 2.3E-37 259.3 17.4 134 66-211 279-419 (481)
4 KOG4206|consensus 99.6 2.3E-15 5.1E-20 130.3 7.5 131 67-211 14-171 (221)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 7.3E-15 1.6E-19 138.6 11.4 130 66-211 100-301 (481)
6 TIGR01659 sex-lethal sex-letha 99.5 9.2E-14 2E-18 127.4 9.3 101 67-211 112-218 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 6.5E-13 1.4E-17 118.3 9.2 102 66-211 7-114 (352)
8 KOG0145|consensus 99.3 7.1E-12 1.5E-16 111.8 7.4 102 66-211 45-152 (360)
9 TIGR01622 SF-CC1 splicing fact 99.2 4.4E-11 9.5E-16 110.6 10.1 113 66-211 93-211 (457)
10 TIGR01628 PABP-1234 polyadenyl 99.2 4.3E-11 9.3E-16 114.2 9.4 103 67-211 5-113 (562)
11 TIGR01645 half-pint poly-U bin 99.2 8.5E-11 1.8E-15 115.0 9.7 113 66-211 111-229 (612)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.1 1E-09 2.3E-14 97.7 12.5 72 66-143 93-172 (352)
13 TIGR01628 PABP-1234 polyadenyl 99.1 6.3E-10 1.4E-14 106.2 9.8 107 65-211 91-203 (562)
14 PF13893 RRM_5: RNA recognitio 99.0 8.9E-10 1.9E-14 74.6 6.3 48 81-139 9-56 (56)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.0 2.3E-09 4.9E-14 100.4 10.5 130 66-211 299-444 (509)
16 TIGR01648 hnRNP-R-Q heterogene 99.0 1.4E-09 3E-14 106.0 9.2 69 66-140 62-136 (578)
17 KOG0117|consensus 98.9 2.1E-09 4.6E-14 101.3 7.8 71 66-141 87-163 (506)
18 TIGR01642 U2AF_lg U2 snRNP aux 98.9 1.1E-08 2.4E-13 95.7 10.9 122 67-211 180-320 (509)
19 KOG0109|consensus 98.9 2.4E-09 5.3E-14 96.6 4.9 92 66-211 6-103 (346)
20 TIGR01622 SF-CC1 splicing fact 98.7 1.6E-07 3.4E-12 87.0 11.8 69 66-140 190-264 (457)
21 TIGR01648 hnRNP-R-Q heterogene 98.7 4.6E-08 1E-12 95.5 8.6 119 66-211 237-366 (578)
22 PLN03134 glycine-rich RNA-bind 98.7 6.6E-08 1.4E-12 78.6 7.0 73 66-144 38-116 (144)
23 PF00076 RRM_1: RNA recognitio 98.6 6.3E-08 1.4E-12 66.2 3.8 62 67-135 3-70 (70)
24 PF14259 RRM_6: RNA recognitio 98.5 1.1E-07 2.3E-12 66.2 4.3 62 67-135 3-70 (70)
25 KOG0131|consensus 98.5 1E-07 2.3E-12 81.3 3.9 102 67-211 14-121 (203)
26 COG0724 RNA-binding proteins ( 98.4 2.7E-06 5.9E-11 69.0 10.0 126 66-211 119-250 (306)
27 KOG1190|consensus 98.4 7.2E-07 1.6E-11 83.8 7.2 123 73-211 161-323 (492)
28 smart00360 RRM RNA recognition 98.4 1.2E-06 2.5E-11 58.1 5.6 65 67-137 1-71 (71)
29 TIGR01659 sex-lethal sex-letha 98.3 1.1E-06 2.3E-11 81.0 6.6 71 67-143 198-276 (346)
30 KOG0127|consensus 98.3 5.3E-06 1.2E-10 80.4 10.7 69 66-141 121-195 (678)
31 smart00362 RRM_2 RNA recogniti 98.3 2.2E-06 4.7E-11 57.1 5.7 63 67-137 4-72 (72)
32 KOG0107|consensus 98.2 1.2E-06 2.6E-11 74.4 4.7 67 67-144 15-87 (195)
33 KOG0148|consensus 98.2 3.8E-06 8.1E-11 75.6 7.9 117 67-211 67-189 (321)
34 KOG0110|consensus 98.2 7.8E-06 1.7E-10 80.8 8.8 113 67-211 520-638 (725)
35 KOG0123|consensus 98.1 5.8E-06 1.3E-10 76.9 7.5 107 66-211 80-192 (369)
36 KOG1456|consensus 98.1 5.4E-06 1.2E-10 77.5 7.1 79 73-168 133-218 (494)
37 cd00590 RRM RRM (RNA recogniti 98.1 8.5E-06 1.8E-10 54.4 5.8 65 67-138 4-74 (74)
38 KOG0117|consensus 98.1 3E-06 6.4E-11 80.4 4.1 65 67-145 264-334 (506)
39 KOG0114|consensus 98.1 5.5E-06 1.2E-10 65.5 4.5 63 67-140 23-93 (124)
40 KOG0123|consensus 98.1 1.1E-05 2.3E-10 75.1 7.2 88 72-211 8-101 (369)
41 TIGR01645 half-pint poly-U bin 98.0 1.1E-05 2.4E-10 79.5 7.1 70 66-141 208-283 (612)
42 KOG0144|consensus 98.0 5.6E-06 1.2E-10 78.3 4.6 103 67-211 39-149 (510)
43 smart00361 RRM_1 RNA recogniti 98.0 2.9E-05 6.2E-10 55.1 6.6 53 80-137 16-70 (70)
44 PLN03120 nucleic acid binding 97.9 1.8E-05 3.8E-10 70.8 6.3 68 66-143 8-81 (260)
45 KOG1457|consensus 97.9 6.9E-05 1.5E-09 66.2 8.4 73 66-144 38-120 (284)
46 KOG0145|consensus 97.8 6E-05 1.3E-09 67.9 6.7 68 67-140 283-356 (360)
47 KOG0122|consensus 97.7 6.7E-05 1.4E-09 66.7 6.3 71 66-142 193-269 (270)
48 PLN03121 nucleic acid binding 97.6 0.00011 2.5E-09 65.0 5.9 66 66-141 9-80 (243)
49 KOG0108|consensus 97.6 0.00011 2.4E-09 69.9 5.4 74 66-145 22-101 (435)
50 KOG4207|consensus 97.5 0.00012 2.7E-09 64.0 4.4 74 67-146 18-97 (256)
51 KOG0111|consensus 97.4 9.7E-05 2.1E-09 65.3 2.8 74 67-146 15-94 (298)
52 KOG0125|consensus 97.3 0.0004 8.7E-09 64.1 6.1 68 67-142 101-174 (376)
53 PLN03213 repressor of silencin 97.2 0.00041 8.8E-09 67.2 5.1 69 67-145 15-91 (759)
54 KOG4208|consensus 97.2 0.00054 1.2E-08 59.5 5.4 55 82-142 76-130 (214)
55 KOG0127|consensus 97.1 0.0016 3.6E-08 63.6 8.0 129 66-211 9-142 (678)
56 KOG0130|consensus 97.0 0.00063 1.4E-08 56.3 3.2 69 67-139 77-149 (170)
57 KOG0132|consensus 96.9 0.0012 2.5E-08 66.6 5.2 67 67-145 426-498 (894)
58 PF11608 Limkain-b1: Limkain b 96.8 0.0011 2.4E-08 50.5 3.0 63 66-144 6-79 (90)
59 KOG1548|consensus 96.8 0.0018 3.8E-08 60.2 4.9 71 67-144 139-223 (382)
60 KOG0126|consensus 96.8 0.00082 1.8E-08 57.9 2.3 66 67-138 40-111 (219)
61 KOG0124|consensus 96.6 0.0023 5E-08 60.2 4.5 83 101-211 153-235 (544)
62 KOG0148|consensus 96.5 0.0063 1.4E-07 55.2 6.0 67 67-145 169-241 (321)
63 KOG4205|consensus 96.3 0.0078 1.7E-07 55.2 5.6 105 68-211 12-122 (311)
64 KOG0105|consensus 96.3 0.023 4.9E-07 49.4 7.9 120 67-211 11-140 (241)
65 KOG0109|consensus 96.2 0.0057 1.2E-07 56.0 4.4 61 67-141 83-149 (346)
66 KOG0113|consensus 96.1 0.012 2.7E-07 53.9 6.0 58 82-145 127-184 (335)
67 KOG0147|consensus 96.0 0.012 2.5E-07 57.4 5.5 67 67-139 283-355 (549)
68 KOG0131|consensus 95.9 0.0088 1.9E-07 51.5 3.8 72 67-144 101-179 (203)
69 KOG4454|consensus 95.8 0.0034 7.4E-08 55.5 1.0 68 67-142 14-87 (267)
70 PLN03134 glycine-rich RNA-bind 95.7 0.01 2.2E-07 48.2 3.4 30 182-211 30-59 (144)
71 KOG0146|consensus 95.7 0.016 3.4E-07 52.8 4.7 58 78-141 38-100 (371)
72 KOG0144|consensus 95.6 0.0093 2E-07 57.0 3.1 65 76-146 141-210 (510)
73 KOG0147|consensus 95.6 0.0093 2E-07 58.1 2.9 97 82-211 205-303 (549)
74 KOG0121|consensus 95.3 0.017 3.7E-07 47.5 3.3 67 67-139 41-113 (153)
75 smart00362 RRM_2 RNA recogniti 94.9 0.023 4.9E-07 37.3 2.5 24 188-211 1-24 (72)
76 KOG0146|consensus 94.8 0.022 4.8E-07 51.9 2.9 72 67-144 290-367 (371)
77 KOG0106|consensus 94.6 0.031 6.8E-07 48.9 3.2 89 101-211 33-124 (216)
78 KOG0114|consensus 94.5 0.033 7.2E-07 44.4 2.8 26 186-211 18-43 (124)
79 KOG4206|consensus 94.2 0.071 1.5E-06 46.9 4.5 64 67-140 151-220 (221)
80 KOG4212|consensus 93.9 0.11 2.3E-06 50.2 5.5 64 67-137 49-119 (608)
81 KOG4211|consensus 93.9 0.3 6.5E-06 47.4 8.4 106 67-208 15-125 (510)
82 KOG1995|consensus 93.8 0.036 7.7E-07 51.6 2.0 72 66-143 70-155 (351)
83 KOG0151|consensus 93.7 0.092 2E-06 53.1 4.8 77 67-146 179-261 (877)
84 COG0724 RNA-binding proteins ( 93.5 0.069 1.5E-06 43.1 3.1 26 186-211 115-140 (306)
85 KOG4212|consensus 93.5 0.072 1.6E-06 51.4 3.5 61 67-138 541-607 (608)
86 PF08952 DUF1866: Domain of un 93.2 0.23 5.1E-06 41.1 5.7 49 82-145 62-110 (146)
87 KOG0120|consensus 93.2 0.1 2.2E-06 50.9 4.1 72 67-144 294-371 (500)
88 KOG4660|consensus 92.9 0.035 7.6E-07 54.2 0.5 59 66-135 79-143 (549)
89 KOG0153|consensus 92.6 0.18 3.9E-06 47.2 4.7 49 82-141 254-302 (377)
90 KOG0415|consensus 92.3 0.17 3.7E-06 47.7 4.2 60 79-144 259-321 (479)
91 KOG0149|consensus 92.0 0.26 5.5E-06 44.0 4.7 66 67-139 17-88 (247)
92 KOG0533|consensus 91.7 0.41 8.8E-06 42.7 5.7 73 66-145 87-165 (243)
93 KOG4209|consensus 90.8 0.44 9.5E-06 42.0 5.0 54 82-142 127-180 (231)
94 PF04059 RRM_2: RNA recognitio 90.7 0.56 1.2E-05 36.2 4.9 73 65-144 4-89 (97)
95 PF07292 NID: Nmi/IFP 35 domai 89.6 0.6 1.3E-05 35.5 4.2 72 106-207 1-73 (88)
96 KOG2193|consensus 88.7 0.22 4.9E-06 47.9 1.6 69 102-211 36-105 (584)
97 KOG4307|consensus 88.6 1.4 3E-05 44.9 7.0 61 67-136 872-941 (944)
98 KOG1457|consensus 88.5 0.45 9.7E-06 42.6 3.2 55 66-129 214-274 (284)
99 KOG4660|consensus 88.2 0.37 8E-06 47.3 2.7 28 184-211 73-100 (549)
100 KOG4661|consensus 88.0 0.54 1.2E-05 47.0 3.7 70 67-142 410-485 (940)
101 KOG0110|consensus 87.6 0.33 7.1E-06 48.9 2.0 73 67-145 618-696 (725)
102 KOG0125|consensus 86.1 0.67 1.5E-05 43.3 3.1 25 187-211 97-121 (376)
103 KOG1365|consensus 84.9 0.51 1.1E-05 45.0 1.7 115 67-210 166-304 (508)
104 KOG0533|consensus 83.4 0.81 1.8E-05 40.8 2.3 25 187-211 84-108 (243)
105 KOG0122|consensus 83.3 0.94 2E-05 40.8 2.6 28 184-211 187-214 (270)
106 KOG0130|consensus 80.2 1.4 3E-05 36.8 2.3 25 187-211 73-97 (170)
107 KOG0120|consensus 79.5 2.8 6.2E-05 41.0 4.6 53 82-138 435-488 (500)
108 KOG3152|consensus 78.8 1.7 3.6E-05 39.4 2.6 26 186-211 74-99 (278)
109 KOG4676|consensus 77.0 3.1 6.6E-05 39.9 3.9 140 67-211 12-176 (479)
110 PF03880 DbpA: DbpA RNA bindin 76.9 5.6 0.00012 28.5 4.5 42 82-138 32-73 (74)
111 KOG1548|consensus 76.7 6.7 0.00014 37.0 6.0 48 82-139 302-349 (382)
112 KOG0121|consensus 76.7 1.8 3.8E-05 35.9 2.0 26 186-211 36-61 (153)
113 PF04847 Calcipressin: Calcipr 76.5 4.9 0.00011 34.3 4.7 51 82-144 21-73 (184)
114 KOG0106|consensus 74.9 1.8 4E-05 38.0 1.8 33 103-136 133-165 (216)
115 KOG0128|consensus 74.1 1.5 3.3E-05 45.2 1.2 53 67-126 672-732 (881)
116 KOG1855|consensus 74.1 1.1 2.4E-05 43.1 0.2 63 67-129 236-312 (484)
117 KOG0124|consensus 73.4 4.9 0.00011 38.4 4.3 69 67-141 215-289 (544)
118 KOG0126|consensus 70.9 0.99 2.2E-05 39.2 -0.8 26 186-211 35-60 (219)
119 KOG2202|consensus 64.9 5 0.00011 36.2 2.3 41 102-143 109-149 (260)
120 KOG0116|consensus 64.4 6.6 0.00014 37.7 3.2 71 67-144 293-369 (419)
121 KOG0113|consensus 64.2 5.4 0.00012 37.0 2.5 30 182-211 97-126 (335)
122 KOG0415|consensus 63.6 4.7 0.0001 38.4 2.0 31 181-211 234-264 (479)
123 KOG0116|consensus 61.1 6.8 0.00015 37.6 2.6 24 188-211 290-313 (419)
124 PF07576 BRAP2: BRCA1-associat 57.2 27 0.00059 27.4 5.0 41 82-129 40-80 (110)
125 KOG0804|consensus 56.8 20 0.00043 35.0 4.9 69 67-143 79-165 (493)
126 KOG4211|consensus 55.0 13 0.00029 36.4 3.5 73 66-144 107-184 (510)
127 COG5175 MOT2 Transcriptional r 54.9 36 0.00079 32.4 6.2 71 67-142 119-203 (480)
128 PF05172 Nup35_RRM: Nup53/35/4 53.6 15 0.00033 28.4 3.0 37 102-140 53-90 (100)
129 PF11767 SET_assoc: Histone ly 53.0 21 0.00046 25.6 3.5 31 105-136 35-65 (66)
130 KOG2416|consensus 49.5 14 0.00029 37.4 2.7 29 183-211 441-469 (718)
131 KOG0151|consensus 48.5 14 0.00031 37.9 2.7 28 184-211 172-199 (877)
132 KOG2314|consensus 47.2 17 0.00036 36.6 2.9 36 102-137 104-139 (698)
133 KOG0132|consensus 47.0 20 0.00042 37.2 3.4 26 186-211 421-446 (894)
134 PF08777 RRM_3: RNA binding mo 45.9 23 0.00049 27.3 2.9 47 69-126 8-60 (105)
135 KOG0129|consensus 44.6 1.3E+02 0.0029 29.8 8.5 119 66-209 263-393 (520)
136 KOG0153|consensus 44.4 16 0.00035 34.5 2.2 26 186-211 228-253 (377)
137 KOG1365|consensus 43.9 65 0.0014 31.2 6.1 115 67-209 65-184 (508)
138 KOG0226|consensus 43.8 17 0.00037 33.1 2.2 35 101-136 230-264 (290)
139 PF15023 DUF4523: Protein of u 43.4 31 0.00068 29.1 3.5 35 79-125 113-147 (166)
140 PF08675 RNA_bind: RNA binding 35.3 41 0.0009 25.7 2.8 24 187-211 10-33 (87)
141 KOG1855|consensus 34.2 31 0.00067 33.6 2.4 27 185-211 230-256 (484)
142 PF10309 DUF2414: Protein of u 33.8 46 0.00099 23.7 2.7 30 82-123 33-62 (62)
143 KOG1996|consensus 33.8 46 0.00099 31.2 3.3 52 82-138 312-363 (378)
144 KOG4574|consensus 31.5 1.5E+02 0.0032 31.5 6.8 53 82-145 324-377 (1007)
145 KOG0129|consensus 27.9 43 0.00093 33.1 2.3 26 186-211 259-284 (520)
146 PF14605 Nup35_RRM_2: Nup53/35 27.1 90 0.002 21.0 3.2 30 80-120 24-53 (53)
147 KOG4849|consensus 27.1 54 0.0012 31.4 2.7 54 82-141 108-162 (498)
148 PRK14548 50S ribosomal protein 26.3 81 0.0018 23.7 3.1 36 77-122 42-80 (84)
149 PF12829 Mhr1: Transcriptional 26.0 1.1E+02 0.0023 23.5 3.7 37 91-127 35-75 (91)
150 KOG4210|consensus 23.2 42 0.00092 30.4 1.2 72 67-145 190-267 (285)
No 1
>KOG1456|consensus
Probab=100.00 E-value=7.8e-56 Score=403.79 Aligned_cols=199 Identities=44% Similarity=0.681 Sum_probs=176.6
Q ss_pred CCCCceeeeecCCCccccccCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-----CCCC----------CCC----CC
Q psy17775 1 MSAPTKLNVYKNDSESWDYTQPTLGRT-KDGPPSRPGPLLPEPPRRLPTPSG-----PPSM----------PNY----RG 60 (211)
Q Consensus 1 ~s~~~~LnV~~N~~~s~DyTnp~L~~~-~~~~~~~~~~~~~~~~g~~p~~~g-----~~~~----------~~~----~~ 60 (211)
||||++|||.+||.+|||||.|+|+.. ++++...+++.+|+++|.+|..+| |.+. +++ +.
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 799999999999999999999999655 444666678899999999998874 2210 011 11
Q ss_pred --C-------C--CCCccCCCC-CCCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH
Q psy17775 61 --G-------Y--PDDDYYGAP-PAFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGN 122 (211)
Q Consensus 61 --~-------~--p~~~v~nl~-~~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~ 122 (211)
| . ++.|||||. .|||||+||| ||+|||||| .|+|+|||||+|++++++|++|
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk----------Tk~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK----------TKPGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee----------cccceeEEEcCcHHHHHHHHHH
Confidence 1 1 112699997 5999999999 999999999 9999999999999999999999
Q ss_pred hCCceecCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHH
Q psy17775 123 LSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQ 202 (211)
Q Consensus 123 L~g~~Lf~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~ 202 (211)
||+..|| |++|+|++|||.++.++ +|+.|+|||++||||+.||+|||.++++|+||||+|||++|||||+|..+|||+
T Consensus 345 Lnn~~lf-G~kl~v~~SkQ~~v~~~-~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~ 422 (494)
T KOG1456|consen 345 LNNIPLF-GGKLNVCVSKQNFVSPV-QPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQ 422 (494)
T ss_pred hccCccc-cceEEEeeccccccccC-CceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHH
Confidence 9999999 99999999999999985 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCC
Q psy17775 203 LTDISGRTD 211 (211)
Q Consensus 203 L~~lf~~~G 211 (211)
|.+||.+++
T Consensus 423 l~~i~nek~ 431 (494)
T KOG1456|consen 423 LIGICNEKD 431 (494)
T ss_pred HHHHhhhcC
Confidence 999998764
No 2
>KOG1190|consensus
Probab=100.00 E-value=3.3e-43 Score=323.36 Aligned_cols=195 Identities=30% Similarity=0.368 Sum_probs=158.8
Q ss_pred CCCCceeeeecCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCC---C---CCCCCCC----Cc
Q psy17775 1 MSAPTKLNVYKNDSESWDYTQPTLGRTKDGPPSRPGPLLPEPPRRLPT----PSGPPSMP---N---YRGGYPD----DD 66 (211)
Q Consensus 1 ~s~~~~LnV~~N~~~s~DyTnp~L~~~~~~~~~~~~~~~~~~~g~~p~----~~g~~~~~---~---~~~~~p~----~~ 66 (211)
|||++.||||||||+|||||||+||.+ ++.++ ..+.+++..|.-|. ++++++.. . -..+.+. ..
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~g-d~~p~-l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vll 301 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVG-DGQPS-LDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLL 301 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCC-ccccc-cchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEE
Confidence 899999999999999999999999987 33222 22233333332221 12222211 0 1122232 24
Q ss_pred cCCCCC-CCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPP-AFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~-~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|.||++ .|+.|.||. +|+|||||+ +|+++|||||+|+.+|++|++||+|++|| ||+|+|+||
T Consensus 302 vsnln~~~VT~d~LftlFgvYGdVqRVkil~----------nkkd~ALIQmsd~~qAqLA~~hL~g~~l~-gk~lrvt~S 370 (492)
T KOG1190|consen 302 VSNLNEEAVTPDVLFTLFGVYGDVQRVKILY----------NKKDNALIQMSDGQQAQLAMEHLEGHKLY-GKKLRVTLS 370 (492)
T ss_pred EecCchhccchhHHHHHHhhhcceEEEEeee----------cCCcceeeeecchhHHHHHHHHhhcceec-CceEEEeec
Confidence 899986 999999877 999999999 89999999999999999999999999999 999999999
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
||+.+. .|.+..+....++||.+|.+|||..+.+.....|+|||++||++|+|++++||+|.++|.++|
T Consensus 371 KH~~vq---lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g 439 (492)
T KOG1190|consen 371 KHTNVQ---LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPG 439 (492)
T ss_pred cCcccc---CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCC
Confidence 999998 477777777789999999999999988777778999999999999999999999999999987
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.1e-32 Score=259.28 Aligned_cols=134 Identities=33% Similarity=0.475 Sum_probs=122.8
Q ss_pred ccCCCCC-CCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPP-AFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~-~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|+||++ ++++|.|++ +|++||+++ .++|+|||||.|..+|+.||.+|+|..|+ |++|+|++
T Consensus 279 ~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~----------~~~g~afV~f~~~~~A~~Ai~~lng~~l~-g~~l~v~~ 347 (481)
T TIGR01649 279 MVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK----------NKKETALIEMADPYQAQLALTHLNGVKLF-GKPLRVCP 347 (481)
T ss_pred EEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe----------CCCCEEEEEECCHHHHHHHHHHhCCCEEC-CceEEEEE
Confidence 4899997 799999755 999999999 78899999999999999999999999999 99999999
Q ss_pred cCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 139 SKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 139 SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
||+..+.. .....+++|...|+||+.++++||..+.++.+++|++|+++|||.|||.++|||+|+++|+++|
T Consensus 348 s~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G 419 (481)
T TIGR01649 348 SKQQNVQP-PREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENG 419 (481)
T ss_pred cccccccC-CCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcC
Confidence 99998864 2335678888889999999999999988788889999999999999999999999999999987
No 4
>KOG4206|consensus
Probab=99.59 E-value=2.3e-15 Score=130.27 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=93.1
Q ss_pred cCCCCCCCcccc-------ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEE
Q psy17775 67 YYGAPPAFEFER-------SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136 (211)
Q Consensus 67 v~nl~~~i~~d~-------LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V 136 (211)
|.||+++|+.|. ||+ .|+.|..++ ++-+ +|||+|.|.+..+|..|++.|+|+++| ||+|+|
T Consensus 14 InnLnekI~~~elkrsL~~LFsqfG~ildI~a~k-------t~Km-RGQA~VvFk~~~~As~A~r~l~gfpFy-gK~mri 84 (221)
T KOG4206|consen 14 INNLNEKIKKDELKRSLYLLFSQFGKILDISAFK-------TPKM-RGQAFVVFKETEAASAALRALQGFPFY-GKPMRI 84 (221)
T ss_pred ehhccccccHHHHHHHHHHHHHhhCCeEEEEecC-------CCCc-cCceEEEecChhHHHHHHHHhcCCccc-Cchhhe
Confidence 899999999997 576 455555554 0004 899999999999999999999999999 999999
Q ss_pred eecCCcccccCCCCccCCCCCCcccc--cccCcccccCCchhccC---------------CCCCCCcceEEeecCCCCCC
Q psy17775 137 AYSKQVFLSDVSHPYELPDGSESFKD--FTGSRKNRFMNPKMAMK---------------NRIQPPSQLLHFFNAPPDIT 199 (211)
Q Consensus 137 ~~SK~~~i~~~~~~~~l~dgs~~~kd--fs~s~~nRf~~~~~~~k---------------n~i~pPs~~Lh~~NlP~~~t 199 (211)
+|||..++.- ..++|+-.+++ +...++.|-..+..... ---.||+.+|++.|+|.+.+
T Consensus 85 qyA~s~sdii-----~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~ 159 (221)
T KOG4206|consen 85 QYAKSDSDII-----AQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESE 159 (221)
T ss_pred ecccCccchh-----hccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchh
Confidence 9999988763 33333222222 11222221111111000 01268999999999999999
Q ss_pred HHHHHhhhccCC
Q psy17775 200 EEQLTDISGRTD 211 (211)
Q Consensus 200 ee~L~~lf~~~G 211 (211)
+|.|..+|.++.
T Consensus 160 ~e~l~~lf~qf~ 171 (221)
T KOG4206|consen 160 SEMLSDLFEQFP 171 (221)
T ss_pred HHHHHHHHhhCc
Confidence 999999998863
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.59 E-value=7.3e-15 Score=138.65 Aligned_cols=130 Identities=16% Similarity=0.125 Sum_probs=94.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC-ceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG-KRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G-k~L~V~~ 138 (211)
.|.||+..|+.|.| |+ .|++|+++++ ...++|||||.|.++|++|++.|||..|++| .+|+|.|
T Consensus 100 ~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~---------~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 100 IVENPMYPITLDVLYQIFNPYGKVLRIVTFTK---------NNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred EEcCCCCCCCHHHHHHHHhccCCEEEEEEEec---------CCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 37788889999986 44 9999999882 2237999999999999999999999999943 5899999
Q ss_pred cCCcccccCCCCccCCCCCCcccccccCcc-------------cccCCc-------------------------------
Q psy17775 139 SKQVFLSDVSHPYELPDGSESFKDFTGSRK-------------NRFMNP------------------------------- 174 (211)
Q Consensus 139 SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~-------------nRf~~~------------------------------- 174 (211)
||...+.. .+ .+ ...+||+++.+ +|+...
T Consensus 171 sk~~~l~v---~~--~~--~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 243 (481)
T TIGR01649 171 AKPTRLNV---KY--ND--DDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGP 243 (481)
T ss_pred ecCCCcee---Ee--cc--cCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCC
Confidence 99987752 00 01 11234443322 111100
Q ss_pred ---------------h---h--ccCCCCCCCcceEEeecCCC-CCCHHHHHhhhccCC
Q psy17775 175 ---------------K---M--AMKNRIQPPSQLLHFFNAPP-DITEEQLTDISGRTD 211 (211)
Q Consensus 175 ---------------~---~--~~kn~i~pPs~~Lh~~NlP~-~~tee~L~~lf~~~G 211 (211)
. . .....+++|+.+|||.|||+ .+||++|.+||+++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG 301 (481)
T TIGR01649 244 PHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG 301 (481)
T ss_pred cccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC
Confidence 0 0 00113467999999999998 699999999999998
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.49 E-value=9.2e-14 Score=127.38 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=85.7
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++++.| |. .|+.|+|++ +..++ ..+|+|||+|.|.++|++||..|+|..|. |++|+|.+++
T Consensus 112 VgnLp~~~te~~L~~lF~~~G~V~~v~i~~--d~~tg---~srGyaFVeF~~~e~A~~Ai~~LnG~~l~-gr~i~V~~a~ 185 (346)
T TIGR01659 112 VNYLPQDMTDRELYALFRTIGPINTCRIMR--DYKTG---YSFGYAFVDFGSEADSQRAIKNLNGITVR-NKRLKVSYAR 185 (346)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEe--cCCCC---ccCcEEEEEEccHHHHHHHHHHcCCCccC-Cceeeeeccc
Confidence 8899999999986 54 999999998 55555 56799999999999999999999999999 9999999876
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..... ..+.+|+|.|||.++|||+|+++|+++|
T Consensus 186 p~~~~--------------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 186 PGGES--------------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred ccccc--------------------------------------cccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 42110 0124699999999999999999999987
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.42 E-value=6.5e-13 Score=118.28 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=86.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ ++.+| ..+|+|||+|.+.+.|+.||..|+|..|. |++|+|.++
T Consensus 7 ~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~--d~~~g---~s~g~afV~f~~~~~A~~Ai~~l~g~~l~-g~~i~v~~a 80 (352)
T TIGR01661 7 IVNYLPQTMTQEEIRSLFTSIGEIESCKLVR--DKVTG---QSLGYGFVNYVRPEDAEKAVNSLNGLRLQ-NKTIKVSYA 80 (352)
T ss_pred EEeCCCCCCCHHHHHHHHHccCCEEEEEEEE--cCCCC---ccceEEEEEECcHHHHHHHHhhcccEEEC-CeeEEEEee
Confidence 48899999999986 44 999999998 55555 45799999999999999999999999999 999999988
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..... . ....|++.|||.+++|++|.++|+++|
T Consensus 81 ~~~~~~--------------------------------~------~~~~l~v~~l~~~~~~~~l~~~f~~~G 114 (352)
T TIGR01661 81 RPSSDS--------------------------------I------KGANLYVSGLPKTMTQHELESIFSPFG 114 (352)
T ss_pred cccccc--------------------------------c------ccceEEECCccccCCHHHHHHHHhccC
Confidence 653211 0 124699999999999999999999887
No 8
>KOG0145|consensus
Probab=99.28 E-value=7.1e-12 Score=111.80 Aligned_cols=102 Identities=20% Similarity=0.192 Sum_probs=92.7
Q ss_pred ccCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
+|.-||..|+.|. ||. +|+.||++| |+++| ..-|+.||-|-++..|++||.-|||..|. .|.|+|+|+
T Consensus 45 IvNYLPQ~MTqdE~rSLF~SiGeiEScKLvR--DKitG---qSLGYGFVNYv~p~DAe~AintlNGLrLQ-~KTIKVSyA 118 (360)
T KOG0145|consen 45 IVNYLPQNMTQDELRSLFGSIGEIESCKLVR--DKITG---QSLGYGFVNYVRPKDAEKAINTLNGLRLQ-NKTIKVSYA 118 (360)
T ss_pred eeeecccccCHHHHHHHhhcccceeeeeeee--ccccc---cccccceeeecChHHHHHHHhhhcceeec-cceEEEEec
Confidence 4777999999997 688 999999999 99998 66799999999999999999999999999 999999999
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..+..- |. ..||++.||..+|..+|.+||+++|
T Consensus 119 RPSs~~I--------------------------------k~------aNLYvSGlPktMtqkelE~iFs~fG 152 (360)
T KOG0145|consen 119 RPSSDSI--------------------------------KD------ANLYVSGLPKTMTQKELEQIFSPFG 152 (360)
T ss_pred cCChhhh--------------------------------cc------cceEEecCCccchHHHHHHHHHHhh
Confidence 9877651 11 4799999999999999999999987
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.23 E-value=4.4e-11 Score=110.62 Aligned_cols=113 Identities=18% Similarity=0.062 Sum_probs=88.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |+ .|+.|++++ ++.++ ..+|.|||+|.+.++|+.||. |+|..|. |++|.|.++
T Consensus 93 ~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~--d~~~~---~skg~afVeF~~~e~A~~Al~-l~g~~~~-g~~i~v~~~ 165 (457)
T TIGR01622 93 FVLQLALKARERDLYEFFSKVGKVRDVQCIK--DRNSR---RSKGVAYVEFYDVESVIKALA-LTGQMLL-GRPIIVQSS 165 (457)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEee--cCCCC---CcceEEEEEECCHHHHHHHHH-hCCCEEC-CeeeEEeec
Confidence 48999999999886 55 999999998 55555 458999999999999999996 9999999 999999877
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+....... +... ......|++.+|+|.|||.++||++|.++|+++|
T Consensus 166 ~~~~~~~~----------------------~~~~----~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G 211 (457)
T TIGR01622 166 QAEKNRAA----------------------KAAT----HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG 211 (457)
T ss_pred chhhhhhh----------------------hccc----ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence 54322210 0000 0001124478999999999999999999999987
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.21 E-value=4.3e-11 Score=114.17 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=84.8
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++++.| |+ .|+.|++++ +..++ ..+|+|+|.|.+.++|++|++.|++..|. |++|+|.+|+
T Consensus 5 VgnLp~~vte~~L~~~F~~~G~v~~v~v~~--d~~t~---~s~G~afV~F~~~~~A~~Al~~ln~~~i~-gk~i~i~~s~ 78 (562)
T TIGR01628 5 VGDLDPDVTEAKLYDLFKPFGPVLSVRVCR--DSVTR---RSLGYGYVNFQNPADAERALETMNFKRLG-GKPIRIMWSQ 78 (562)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEe--cCCCC---CcceEEEEEECCHHHHHHHHHHhCCCEEC-CeeEEeeccc
Confidence 7899999999987 44 899999998 44444 44799999999999999999999999999 9999999875
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..... |.. -..+|+|.|||.++|+++|.++|+.+|
T Consensus 79 ~~~~~------------------------~~~------------~~~~vfV~nLp~~~~~~~L~~~F~~~G 113 (562)
T TIGR01628 79 RDPSL------------------------RRS------------GVGNIFVKNLDKSVDNKALFDTFSKFG 113 (562)
T ss_pred ccccc------------------------ccc------------CCCceEEcCCCccCCHHHHHHHHHhcC
Confidence 32110 000 024699999999999999999999987
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.18 E-value=8.5e-11 Score=114.97 Aligned_cols=113 Identities=11% Similarity=0.110 Sum_probs=86.6
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|.+|++++ +..+| ..+|+|||+|.+.++|++||..|+|..|. |++|+|..+
T Consensus 111 fVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~--D~~Tg---kskGfAFVeF~s~e~A~~Ai~~lnG~~i~-GR~IkV~rp 184 (612)
T TIGR01645 111 YVGSISFELREDTIRRAFDPFGPIKSINMSW--DPATG---KHKGFAFVEYEVPEAAQLALEQMNGQMLG-GRNIKVGRP 184 (612)
T ss_pred EEcCCCCCCCHHHHHHHHHccCCEEEEEEee--cCCCC---CcCCeEEEEeCcHHHHHHHHHhcCCeEEe-cceeeeccc
Confidence 38999999999985 55 999999998 66666 56899999999999999999999999999 999999743
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...... .+ ..+. ... -......||+.|||+++++++|+++|+++|
T Consensus 185 ~~~p~a-----------~~-~~~~-------~~~--------~~~~~~rLfVgnLp~~vteedLk~lFs~FG 229 (612)
T TIGR01645 185 SNMPQA-----------QP-IIDM-------VQE--------EAKKFNRIYVASVHPDLSETDIKSVFEAFG 229 (612)
T ss_pred cccccc-----------cc-cccc-------ccc--------cccccceEEeecCCCCCCHHHHHHHHhhcC
Confidence 221100 00 0000 000 001235799999999999999999999987
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.10 E-value=1e-09 Score=97.74 Aligned_cols=72 Identities=15% Similarity=0.311 Sum_probs=59.9
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~ 137 (211)
.|.||+..++.+.| |. .|+.+++++ +..++ ..+|.|+|+|.+.+.|+.||..|+|..+. | .+|.|.
T Consensus 93 ~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~--~~~~~---~~~g~~fv~f~~~~~A~~ai~~l~g~~~~-g~~~~i~v~ 166 (352)
T TIGR01661 93 YVSGLPKTMTQHELESIFSPFGQIITSRILS--DNVTG---LSKGVGFIRFDKRDEADRAIKTLNGTTPS-GCTEPITVK 166 (352)
T ss_pred EECCccccCCHHHHHHHHhccCCEEEEEEEe--cCCCC---CcCcEEEEEECCHHHHHHHHHHhCCCccC-CCceeEEEE
Confidence 48899999988874 55 899999988 44444 45799999999999999999999999887 6 678899
Q ss_pred ecCCcc
Q psy17775 138 YSKQVF 143 (211)
Q Consensus 138 ~SK~~~ 143 (211)
++..+.
T Consensus 167 ~a~~~~ 172 (352)
T TIGR01661 167 FANNPS 172 (352)
T ss_pred ECCCCC
Confidence 887654
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.06 E-value=6.3e-10 Score=106.17 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=84.1
Q ss_pred CccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 65 DDYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 65 ~~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
..|.||+..|+.+.| |+ +|+.||++....+ ..+|.|||+|.+.++|+.||+.|+|..+. |+.|.|..
T Consensus 91 vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g------~skg~afV~F~~~e~A~~Ai~~lng~~~~-~~~i~v~~ 163 (562)
T TIGR01628 91 IFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENG------KSRGYGFVHFEKEESAKAAIQKVNGMLLN-DKEVYVGR 163 (562)
T ss_pred eEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCC------CcccEEEEEECCHHHHHHHHHHhcccEec-CceEEEec
Confidence 358999999999986 44 8999999883222 34799999999999999999999999999 99999865
Q ss_pred cCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 139 SKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 139 SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+...... .. -......|+|.|||.++|||+|.++|+++|
T Consensus 164 ~~~~~~~~------------------~~---------------~~~~~~~l~V~nl~~~~tee~L~~~F~~fG 203 (562)
T TIGR01628 164 FIKKHERE------------------AA---------------PLKKFTNLYVKNLDPSVNEDKLRELFAKFG 203 (562)
T ss_pred cccccccc------------------cc---------------cccCCCeEEEeCCCCcCCHHHHHHHHHhcC
Confidence 43332210 00 001124699999999999999999999987
No 14
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.02 E-value=8.9e-10 Score=74.63 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=44.2
Q ss_pred ccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 81 NSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 81 nnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.+|++|++++ .++++|+|+|.+.++|+.|++.|+|..+. |++|+|.||
T Consensus 9 G~V~~i~~~~----------~~~~~a~V~f~~~~~A~~a~~~l~~~~~~-g~~l~V~~a 56 (56)
T PF13893_consen 9 GEVKKIKIFK----------KKRGFAFVEFASVEDAQKAIEQLNGRQFN-GRPLKVSYA 56 (56)
T ss_dssp S-EEEEEEET----------TSTTEEEEEESSHHHHHHHHHHHTTSEET-TEEEEEEEE
T ss_pred ccEEEEEEEe----------CCCCEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEC
Confidence 3999999999 55699999999999999999999999999 999999987
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.00 E-value=2.3e-09 Score=100.37 Aligned_cols=130 Identities=11% Similarity=0.030 Sum_probs=87.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..+++++ +.-+| ..+|.|||+|.+...|+.||..|+|..|+ |++|.|.++
T Consensus 299 ~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~~~g---~~~g~afv~f~~~~~a~~A~~~l~g~~~~-~~~l~v~~a 372 (509)
T TIGR01642 299 YIGNLPLYLGEDQIKELLESFGDLKAFNLIK--DIATG---LSKGYAFCEYKDPSVTDVAIAALNGKDTG-DNKLHVQRA 372 (509)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe--cCCCC---CcCeEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEEC
Confidence 38899999999985 54 899999987 33333 45799999999999999999999999999 999999999
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCC--C--------CHHHHHhhhcc
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPD--I--------TEEQLTDISGR 209 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~--~--------tee~L~~lf~~ 209 (211)
....... .....++.... .. -...-.....+.-..|+++|+|.|++.. + ..|+|.++|++
T Consensus 373 ~~~~~~~---~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~ 442 (509)
T TIGR01642 373 CVGANQA---TIDTSNGMAPV---TL----LAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK 442 (509)
T ss_pred ccCCCCC---Ccccccccccc---cc----ccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh
Confidence 7654331 00111110000 00 0000000011122468999999999631 1 13678999999
Q ss_pred CC
Q psy17775 210 TD 211 (211)
Q Consensus 210 ~G 211 (211)
||
T Consensus 443 ~G 444 (509)
T TIGR01642 443 YG 444 (509)
T ss_pred cC
Confidence 87
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.99 E-value=1.4e-09 Score=106.01 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=60.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..+++|.| |. .|..|++++ + .+| ..+|.|||+|.+.++|+.||+.|+|..|-+|+.|.|+.|
T Consensus 62 FVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~--D-~sG---~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 62 FVGKIPRDLYEDELVPLFEKAGPIYELRLMM--D-FSG---QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred EeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE--C-CCC---CccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 49999999999987 55 899999998 4 455 558999999999999999999999999976888988877
Q ss_pred C
Q psy17775 140 K 140 (211)
Q Consensus 140 K 140 (211)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 17
>KOG0117|consensus
Probab=98.94 E-value=2.1e-09 Score=101.25 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=63.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|-.||-.+..|.| |. .|--+.+|+ +.+|| ..+|+|||-|...+.|+.||+.||+..|-.||.|.||.|
T Consensus 87 fvGkIPrD~~EdeLvplfEkiG~I~elRLMm--D~~sG---~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 87 FVGKIPRDVFEDELVPLFEKIGKIYELRLMM--DPFSG---DNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred EecCCCccccchhhHHHHHhccceeeEEEee--cccCC---CCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 37888888888885 77 888889999 88999 789999999999999999999999999988999999998
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
--
T Consensus 162 va 163 (506)
T KOG0117|consen 162 VA 163 (506)
T ss_pred ee
Confidence 43
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.89 E-value=1.1e-08 Score=95.72 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=77.3
Q ss_pred cCCCCCCCccccc---cc---------------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCcee
Q psy17775 67 YYGAPPAFEFERS---YN---------------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLL 128 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---------------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~L 128 (211)
|-||+..++.+.| |+ .|..|.+.+ . +|+|||+|.+.++|+.|| .|+|..|
T Consensus 180 VgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----------~-kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 180 VGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----------E-KNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----------C-CCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 8999999999875 55 133344444 3 799999999999999999 5999999
Q ss_pred cCCceeEEeecCCcccccCCCCccCCCC-CCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhh
Q psy17775 129 CNGKRLAVAYSKQVFLSDVSHPYELPDG-SESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDIS 207 (211)
Q Consensus 129 f~Gk~L~V~~SK~~~i~~~~~~~~l~dg-s~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf 207 (211)
. |+.|.|...+...-. +...+.. ......... .+... ..-.....+...|||.|||.++|+++|.++|
T Consensus 248 ~-g~~l~v~r~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f 316 (509)
T TIGR01642 248 S-NVFLKIRRPHDYIPV----PQITPEVSQKNPDDNAK----NVEKL--VNSTTVLDSKDRIYIGNLPLYLGEDQIKELL 316 (509)
T ss_pred e-CceeEecCccccCCc----cccCCCCCCCCCccccc----ccccc--cccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 9 999999644322100 0000000 000000000 00000 0000112345689999999999999999999
Q ss_pred ccCC
Q psy17775 208 GRTD 211 (211)
Q Consensus 208 ~~~G 211 (211)
+++|
T Consensus 317 ~~~G 320 (509)
T TIGR01642 317 ESFG 320 (509)
T ss_pred HhcC
Confidence 9987
No 19
>KOG0109|consensus
Probab=98.86 E-value=2.4e-09 Score=96.63 Aligned_cols=92 Identities=22% Similarity=0.178 Sum_probs=82.3
Q ss_pred ccCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||++.+..+ ||. .|+-|-|+| .++||.|+|..+|+-||++|+|.+|. |+.|+|.-|
T Consensus 6 FIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------------NYgFVHiEdktaaedairNLhgYtLh-g~nInVeaS 71 (346)
T KOG0109|consen 6 FIGNLPREATEQELRSLFEQYGKVLECDIVK-------------NYGFVHIEDKTAAEDAIRNLHGYTLH-GVNINVEAS 71 (346)
T ss_pred hccCCCcccchHHHHHHHHhhCceEeeeeec-------------ccceEEeecccccHHHHhhcccceec-ceEEEEEec
Confidence 3789999888776 577 999999999 69999999999999999999999999 999999877
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|..+- ++..||+-|+-+.+|..+|++.|+++|
T Consensus 72 ksKsk----------------------------------------~stkl~vgNis~tctn~ElRa~fe~yg 103 (346)
T KOG0109|consen 72 KSKSK----------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYG 103 (346)
T ss_pred cccCC----------------------------------------CccccccCCCCccccCHHHhhhhcccC
Confidence 76532 356899999999999999999999987
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.70 E-value=1.6e-07 Score=87.01 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=59.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++ +.-+| ..+|+|||+|.+.++|+.|+..|+|..|. |++|.|.|+
T Consensus 190 ~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~--d~~~g---~~~g~afV~f~~~e~A~~A~~~l~g~~i~-g~~i~v~~a 263 (457)
T TIGR01622 190 YVGNLHFNITEQELRQIFEPFGDIEDVQLHR--DPETG---RSKGFGFIQFHDAEEAKEALEVMNGFELA-GRPIKVGYA 263 (457)
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCeEEEEEEE--cCCCC---ccceEEEEEECCHHHHHHHHHhcCCcEEC-CEEEEEEEc
Confidence 48999999999875 55 899999997 32223 34799999999999999999999999999 999999997
Q ss_pred C
Q psy17775 140 K 140 (211)
Q Consensus 140 K 140 (211)
+
T Consensus 264 ~ 264 (457)
T TIGR01622 264 Q 264 (457)
T ss_pred c
Confidence 6
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.70 E-value=4.6e-08 Score=95.47 Aligned_cols=119 Identities=16% Similarity=0.063 Sum_probs=88.3
Q ss_pred ccCCCCCCCccccc---cc-----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN-----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn-----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
.|.||+..++.|.| |. .|++|++++ |.|||+|.+.++|+.||..|||..|. |++|+|+
T Consensus 237 fVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------------gfAFVeF~s~e~A~kAi~~lnG~~i~-Gr~I~V~ 302 (578)
T TIGR01648 237 YVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------------DYAFVHFEDREDAVKAMDELNGKELE-GSEIEVT 302 (578)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------------CeEEEEeCCHHHHHHHHHHhCCCEEC-CEEEEEE
Confidence 48999999999876 43 789988777 79999999999999999999999999 9999999
Q ss_pred ecCCcccccCCCCccCCCCCCcccccccCcccccCCc--hhccCC-CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 138 YSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNP--KMAMKN-RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 138 ~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~--~~~~kn-~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
++|...... +.-|+...-.|-... +..... ...|++..|.+-|++-+.+++.+.++|..+|
T Consensus 303 ~Akp~~~~~-------------~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g 366 (578)
T TIGR01648 303 LAKPVDKKS-------------YVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPG 366 (578)
T ss_pred EccCCCccc-------------ccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCc
Confidence 998754331 122222111111100 000111 2567899999999999999999999998765
No 22
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.66 E-value=6.6e-08 Score=78.55 Aligned_cols=73 Identities=18% Similarity=0.123 Sum_probs=62.5
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +.-++ ..+|.|||+|.+.+.|+.||..|+|..|. |++|+|.++
T Consensus 38 fVgnL~~~~te~~L~~~F~~~G~I~~v~i~~--d~~tg---~~kGfaFV~F~~~e~A~~Al~~lng~~i~-Gr~l~V~~a 111 (144)
T PLN03134 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIV--DRETG---RSRGFGFVNFNDEGAATAAISEMDGKELN-GRHIRVNPA 111 (144)
T ss_pred EEeCCCCCCCHHHHHHHHhcCCCeEEEEEEe--cCCCC---CcceEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEeC
Confidence 58999999999986 65 899999987 33333 45799999999999999999999999999 999999998
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+...-
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76443
No 23
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.56 E-value=6.3e-08 Score=66.18 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=53.6
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
|.|||+.++.+.| |. .|..++++.+..+ ..++.|+|+|.+.+.|+.|++.|+|..+. |++|+
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~------~~~~~a~V~F~~~~~a~~a~~~l~g~~~~-~~~ir 70 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSG------KSKGYAFVEFESEEDAEKALEELNGKKIN-GRKIR 70 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTEEEEEEEEETTS------SEEEEEEEEESSHHHHHHHHHHHTTEEET-TEEEE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhcccccccccccc------cccceEEEEEcCHHHHHHHHHHcCCCEEC-ccCcC
Confidence 6799999999986 44 9999999984222 56899999999999999999999999999 99885
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.53 E-value=1.1e-07 Score=66.22 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=51.0
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
|+|||..++++.| |+ .|..|++++..++ ..+|.|||+|.+.+.|.+|++.++|..|. |++|+
T Consensus 3 i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~------~~~~~a~v~f~~~~~a~~al~~~~~~~~~-g~~l~ 70 (70)
T PF14259_consen 3 ISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDG------QSRGFAFVEFSSEEDAKRALELLNGKEID-GRKLR 70 (70)
T ss_dssp EESSTTT--HHHHHHHCTTSSBEEEEEEEESTTS------SEEEEEEEEESSHHHHHHHHHHHTTEEET-TEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCcceEEEEeeecc------ccCCEEEEEeCCHHHHHHHHHHCCCcEEC-CEEcC
Confidence 6899999999986 44 8999999992222 23699999999999999999999999999 99885
No 25
>KOG0131|consensus
Probab=98.49 E-value=1e-07 Score=81.25 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=84.9
Q ss_pred cCCCCCCCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-||+++++.+-||. -|+.+++=+ +++.+ .-+|.|||+|...+.|+-||.-||+++|| |++|+|.-+-
T Consensus 14 vgnld~kvs~~~l~EL~iqagpVv~i~iPk--Drv~~---~~qGygF~Ef~~eedadYAikiln~VkLY-grpIrv~kas 87 (203)
T KOG0131|consen 14 VGNLDEKVSEELLYELFIQAGPVVNLHIPK--DRVTQ---KHQGYGFAEFRTEEDADYAIKILNMVKLY-GRPIRVNKAS 87 (203)
T ss_pred EecCCHHHHHHHHHHHHHhcCceeeeecch--hhhcc---cccceeEEEEechhhhHHHHHHHHHHHhc-CceeEEEecc
Confidence 778999999988766 688888887 78887 67899999999999999999999999999 9999997544
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..... ..=+..|++-||-+++.|..|-++|+.+|
T Consensus 88 ~~~~n-------------------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG 121 (203)
T KOG0131|consen 88 AHQKN-------------------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFG 121 (203)
T ss_pred ccccc-------------------------------------ccccccccccccCcchhHHHHHHHHHhcc
Confidence 11111 01126799999999999999999999876
No 26
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.40 E-value=2.7e-06 Score=69.04 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=87.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|.+|++.. +.-++ ..+|.|+|.|.+...|..|+..|+|..|. |++|.|.++
T Consensus 119 ~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~--d~~~~---~~~g~~~v~f~~~~~~~~a~~~~~~~~~~-~~~~~v~~~ 192 (306)
T COG0724 119 FVGNLPYDVTEEDLRELFKKFGPVKRVRLVR--DRETG---KSRGFAFVEFESEESAEKAIEELNGKELE-GRPLRVQKA 192 (306)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCceeEEEeee--ccccC---ccCceEEEEecCHHHHHHHHHHcCCCeEC-CceeEeecc
Confidence 48999999999986 33 778888877 33333 56899999999999999999999999999 999999987
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.. .. .+. .+.... .......++ ..........+..+++.|++..++++++..+|...|
T Consensus 193 ~~--~~---~~~--~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (306)
T COG0724 193 QP--AS---QPR--SELSNN---LDASFAKKL----SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG 250 (306)
T ss_pred cc--cc---ccc--cccccc---cchhhhccc----cccccccccccceeeccccccccchhHHHHhccccc
Confidence 64 00 000 000000 000000011 111122345578899999999999999999987654
No 27
>KOG1190|consensus
Probab=98.39 E-value=7.2e-07 Score=83.80 Aligned_cols=123 Identities=22% Similarity=0.206 Sum_probs=87.0
Q ss_pred CCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC-ceeEEeecCCcccc
Q psy17775 73 AFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG-KRLAVAYSKQVFLS 145 (211)
Q Consensus 73 ~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G-k~L~V~~SK~~~i~ 145 (211)
.|+.|. ||+ .|.||-.+.|+++ =||||||.|...|+.|...|+|.-+||| +.|+|.|||...+.
T Consensus 161 pVslDVLHqvFS~fG~VlKIiTF~Knn~---------FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 161 PVSLDVLHQVFSKFGFVLKIITFTKNNG---------FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred eeEHHHHHHHHhhcceeEEEEEEecccc---------hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 566665 466 9999998887555 6999999999999999999999999987 78999999998876
Q ss_pred cCCCCccCCCCCCcccccccCccc---------------ccCC----------ch-h----ccCCCCCCCc--ceEEeec
Q psy17775 146 DVSHPYELPDGSESFKDFTGSRKN---------------RFMN----------PK-M----AMKNRIQPPS--QLLHFFN 193 (211)
Q Consensus 146 ~~~~~~~l~dgs~~~kdfs~s~~n---------------Rf~~----------~~-~----~~kn~i~pPs--~~Lh~~N 193 (211)
..-+ ...-+||++--+- +... +. . +.-.+|..|+ .+|.++|
T Consensus 232 vKyn-------ndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 232 VKYN-------NDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred eecc-------ccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 3100 1112333332110 0000 00 0 1113577774 8899999
Q ss_pred CC-CCCCHHHHHhhhccCC
Q psy17775 194 AP-PDITEEQLTDISGRTD 211 (211)
Q Consensus 194 lP-~~~tee~L~~lf~~~G 211 (211)
+- .-+|++-|..||+-||
T Consensus 305 ln~~~VT~d~LftlFgvYG 323 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFGVYG 323 (492)
T ss_pred CchhccchhHHHHHHhhhc
Confidence 86 5689999999999887
No 28
>smart00360 RRM RNA recognition motif.
Probab=98.35 E-value=1.2e-06 Score=58.09 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=52.1
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
|.||+..++.+.| |. .|..+++.+... ++ ..+|+|+|+|.+..+|++|+..|+|..+. |++|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~--~~---~~~~~a~v~f~~~~~a~~a~~~~~~~~~~-~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD--TG---KSKGFAFVEFESEEDAEKALEALNGKELD-GRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC--CC---CCCceEEEEeCCHHHHHHHHHHcCCCeeC-CcEEEeC
Confidence 4677888888765 44 899999988321 11 33689999999999999999999999998 9999873
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.32 E-value=1.1e-06 Score=81.01 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=60.8
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEee
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~~ 138 (211)
|.||+..++.|.| |. .|++|++++ ++.++ ..+|+|||+|.+.++|+.||+.|++..|. | ++|+|.+
T Consensus 198 V~nLp~~vtee~L~~~F~~fG~V~~v~i~~--d~~tg---~~kG~aFV~F~~~e~A~~Ai~~lng~~~~-g~~~~l~V~~ 271 (346)
T TIGR01659 198 VTNLPRTITDDQLDTIFGKYGQIVQKNILR--DKLTG---TPRGVAFVRFNKREEAQEAISALNNVIPE-GGSQPLTVRL 271 (346)
T ss_pred EeCCCCcccHHHHHHHHHhcCCEEEEEEee--cCCCC---ccceEEEEEECCHHHHHHHHHHhCCCccC-CCceeEEEEE
Confidence 7899999998875 66 999999998 55555 55799999999999999999999999987 6 6899998
Q ss_pred cCCcc
Q psy17775 139 SKQVF 143 (211)
Q Consensus 139 SK~~~ 143 (211)
++...
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 87643
No 30
>KOG0127|consensus
Probab=98.29 E-value=5.3e-06 Score=80.38 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=61.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
++.|||-++..+.| |+ .|+-|.|=+|.++ ...|.|||||.+...|+.|+..+||..+- |.++.|.++
T Consensus 121 IIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg------klcGFaFV~fk~~~dA~~Al~~~N~~~i~-gR~VAVDWA 193 (678)
T KOG0127|consen 121 IIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG------KLCGFAFVQFKEKKDAEKALEFFNGNKID-GRPVAVDWA 193 (678)
T ss_pred EeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC------CccceEEEEEeeHHHHHHHHHhccCceec-CceeEEeee
Confidence 58999988877774 77 8999999988777 66799999999999999999999999999 999999887
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
=.
T Consensus 194 V~ 195 (678)
T KOG0127|consen 194 VD 195 (678)
T ss_pred cc
Confidence 44
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=98.28 E-value=2.2e-06 Score=57.06 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=52.0
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
+.|||..++.+.| |. .|..++++... + ...|.|+|+|.+...|++|+..|+|..+. |++|+|.
T Consensus 4 i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~----~---~~~~~~~v~f~~~~~a~~a~~~~~~~~~~-~~~i~v~ 72 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKFGPIESVKIPKDT----G---KSKGFAFVEFESEEDAEKAIEALNGTKLG-GRPLRVE 72 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----C---CCCceEEEEeCCHHHHHHHHHHhCCcEEC-CEEEeeC
Confidence 5788888888775 44 89999999822 1 23699999999999999999999999998 9999873
No 32
>KOG0107|consensus
Probab=98.25 E-value=1.2e-06 Score=74.44 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=59.0
Q ss_pred cCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-||....+... +|. -+-.|.+-+ ++||.|||+|+|+-.|+-|+.+|+|..|+ |..++|.+|+
T Consensus 15 VGnL~~~a~k~eLE~~F~~yG~lrsvWvAr----------nPPGfAFVEFed~RDA~DAvr~LDG~~~c-G~r~rVE~S~ 83 (195)
T KOG0107|consen 15 VGNLGSRATKRELERAFSKYGPLRSVWVAR----------NPPGFAFVEFEDPRDAEDAVRYLDGKDIC-GSRIRVELST 83 (195)
T ss_pred eccCCCCcchHHHHHHHHhcCcceeEEEee----------cCCCceEEeccCcccHHHHHhhcCCcccc-CceEEEEeec
Confidence 678887666555 477 888889999 89999999999999999999999999999 9999999998
Q ss_pred Cccc
Q psy17775 141 QVFL 144 (211)
Q Consensus 141 ~~~i 144 (211)
...-
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7654
No 33
>KOG0148|consensus
Probab=98.24 E-value=3.8e-06 Score=75.64 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=86.2
Q ss_pred cCCCCCCCccccc------cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS------YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L------FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|--|-..|+-++| |..|.-.|++| |--++ ..||++||-|-..+.||+||+.++|..|- ++.|+-+.+.
T Consensus 67 vgdls~eI~~e~lr~aF~pFGevS~akvir--D~~T~---KsKGYgFVSf~~k~dAEnAI~~MnGqWlG-~R~IRTNWAT 140 (321)
T KOG0148|consen 67 VGDLSPEIDNEKLREAFAPFGEVSDAKVIR--DMNTG---KSKGYGFVSFPNKEDAENAIQQMNGQWLG-RRTIRTNWAT 140 (321)
T ss_pred ehhcchhcchHHHHHHhccccccccceEee--cccCC---cccceeEEeccchHHHHHHHHHhCCeeec-cceeeccccc
Confidence 4445557777776 55999999998 44444 45899999999999999999999999999 9999988875
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.-.. . .+.+ .+|.. ..|.--|-+.++|.-|++..+||++|+..|+.+|
T Consensus 141 RKp~e-------~-n~~~----------ltfde----V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 141 RKPSE-------M-NGKP----------LTFDE----VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG 189 (321)
T ss_pred cCccc-------c-CCCC----------ccHHH----HhccCCCCCceEEeCCcCccccHHHHHHhcccCC
Confidence 43211 0 0111 11111 2233344567999999999999999999999987
No 34
>KOG0110|consensus
Probab=98.16 E-value=7.8e-06 Score=80.84 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=83.4
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
+.||+-.-+.+.| |. -|..|-|-+|.+..--.+| .|.|||||.+.++|++|++.|+|+.|- |..|.|.+|.
T Consensus 520 vkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lS--mGfgFVEF~~~e~A~~a~k~lqgtvld-GH~l~lk~S~ 596 (725)
T KOG0110|consen 520 VKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLS--MGFGFVEFAKPESAQAALKALQGTVLD-GHKLELKISE 596 (725)
T ss_pred hhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccc--cceeEEEecCHHHHHHHHHHhcCceec-CceEEEEecc
Confidence 5566665555553 55 7888888777666555556 499999999999999999999999999 9999999998
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...- -..| ++- .+ .....-||+-|||=..|-.+++.||..+|
T Consensus 597 --~k~~------~~~g----K~~--------------~~---kk~~tKIlVRNipFeAt~rEVr~LF~aFG 638 (725)
T KOG0110|consen 597 --NKPA------STVG----KKK--------------SK---KKKGTKILVRNIPFEATKREVRKLFTAFG 638 (725)
T ss_pred --Cccc------cccc----ccc--------------cc---ccccceeeeeccchHHHHHHHHHHHhccc
Confidence 1110 0001 000 00 11235799999999999999999999987
No 35
>KOG0123|consensus
Probab=98.15 E-value=5.8e-06 Score=76.90 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=82.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|-||++.||-..| |+ +|+.||.....+| + +|. ||||++.++|+.||+.|||..|+ |+++-|...
T Consensus 80 ~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g------~-kg~-FV~f~~e~~a~~ai~~~ng~ll~-~kki~vg~~ 150 (369)
T KOG0123|consen 80 FIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG------S-KGY-FVQFESEESAKKAIEKLNGMLLN-GKKIYVGLF 150 (369)
T ss_pred eecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC------c-eee-EEEeCCHHHHHHHHHHhcCcccC-CCeeEEeec
Confidence 48899998888875 55 9999999997777 3 688 99999999999999999999999 999999766
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
....... .+.+. ...||+ .+++-|.+.+.|++.|.+.|.+.|
T Consensus 151 ~~~~er~----------~~~~~-----~~~~~t---------------~v~vk~~~~~~~~~~l~~~f~~~g 192 (369)
T KOG0123|consen 151 ERKEERE----------APLGE-----YKKRFT---------------NVYVKNLEEDSTDEELKDLFSAYG 192 (369)
T ss_pred cchhhhc----------ccccc-----hhhhhh---------------hhheeccccccchHHHHHhhcccC
Confidence 6555542 11111 111222 355566669999999999998876
No 36
>KOG1456|consensus
Probab=98.14 E-value=5.4e-06 Score=77.47 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=64.8
Q ss_pred CCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC-ceeEEeecCCcccc
Q psy17775 73 AFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG-KRLAVAYSKQVFLS 145 (211)
Q Consensus 73 ~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G-k~L~V~~SK~~~i~ 145 (211)
.|+.|.|+. .|+||-|++| + -=||||+|++.+.|++|...|||.-+|.| .+|+|.|+|..-+.
T Consensus 133 pItvDVly~Icnp~GkVlRIvIfkk-n---------gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 133 PITVDVLYTICNPQGKVLRIVIFKK-N---------GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred ccchhhhhhhcCCCCceEEEEEEec-c---------ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceee
Confidence 899999876 9999999995 2 35999999999999999999999999987 78999999998887
Q ss_pred cCCCCccCCCCCCcccccccCcc
Q psy17775 146 DVSHPYELPDGSESFKDFTGSRK 168 (211)
Q Consensus 146 ~~~~~~~l~dgs~~~kdfs~s~~ 168 (211)
.. .. ...+.||+...+
T Consensus 203 V~-----kn--d~DtwDyTlp~~ 218 (494)
T KOG1456|consen 203 VQ-----KN--DKDTWDYTLPDL 218 (494)
T ss_pred ee-----ec--CCccccccCCCC
Confidence 31 11 223467766655
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.11 E-value=8.5e-06 Score=54.44 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=53.5
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
+.|||..++.+.| |. .|.++++.+.+.. ...|.|+|+|.+..+|.+|++.|++..+. |+++.|.+
T Consensus 4 i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------~~~~~~~v~f~s~~~a~~a~~~~~~~~~~-~~~~~v~~ 74 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------KSKGFAFVEFEDEEDAEKALEALNGKELG-GRPLRVEF 74 (74)
T ss_pred EeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------CcceEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEeC
Confidence 5788888888765 43 8999999982222 23699999999999999999999999988 99999864
No 38
>KOG0117|consensus
Probab=98.08 E-value=3e-06 Score=80.35 Aligned_cols=65 Identities=18% Similarity=0.077 Sum_probs=61.2
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++.|.| |+ .|+|||.++ ++|||.|.+.+.|-.||..+||..|- |..|+|+++|
T Consensus 264 VRNL~~~tTeE~lk~~F~~~G~veRVkk~r-------------DYaFVHf~eR~davkAm~~~ngkeld-G~~iEvtLAK 329 (506)
T KOG0117|consen 264 VRNLMESTTEETLKKLFNEFGKVERVKKPR-------------DYAFVHFAEREDAVKAMKETNGKELD-GSPIEVTLAK 329 (506)
T ss_pred eeccchhhhHHHHHHHHHhccceEEeeccc-------------ceeEEeecchHHHHHHHHHhcCceec-CceEEEEecC
Confidence 8999999999974 88 999999998 89999999999999999999999999 9999999999
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
.+...
T Consensus 330 P~~k~ 334 (506)
T KOG0117|consen 330 PVDKK 334 (506)
T ss_pred Chhhh
Confidence 97765
No 39
>KOG0114|consensus
Probab=98.06 E-value=5.5e-06 Score=65.55 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=53.8
Q ss_pred cCCCCCCCcccc---ccc---cceEeeE--ecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 67 YYGAPPAFEFER---SYN---SPVLDKF--IGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn---nV~rvK~--l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
|.|||-+|+.|. ||. -|.-|.+ -+ .-+|+|||.++|.+.|.+|++||+|.-+. +.-|.|-|
T Consensus 23 irNLp~~ITseemydlFGkyg~IrQIRiG~~k----------~TrGTAFVVYedi~dAk~A~dhlsg~n~~-~ryl~vly 91 (124)
T KOG0114|consen 23 IRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK----------ETRGTAFVVYEDIFDAKKACDHLSGYNVD-NRYLVVLY 91 (124)
T ss_pred EecCCccccHHHHHHHhhcccceEEEEecCcc----------CcCceEEEEehHhhhHHHHHHHhcccccC-CceEEEEe
Confidence 899999999998 566 5555554 44 66899999999999999999999999999 99999977
Q ss_pred cC
Q psy17775 139 SK 140 (211)
Q Consensus 139 SK 140 (211)
=.
T Consensus 92 yq 93 (124)
T KOG0114|consen 92 YQ 93 (124)
T ss_pred cC
Confidence 43
No 40
>KOG0123|consensus
Probab=98.05 E-value=1.1e-05 Score=75.10 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=73.9
Q ss_pred CCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccc
Q psy17775 72 PAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLS 145 (211)
Q Consensus 72 ~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~ 145 (211)
+.++...| |+ .|+.|++-+ +- + | =|+|+|.|.++..|++||+.||...|. ||+++|..|-....
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~--d~-t---s--lgy~yvnf~~~~da~~A~~~~n~~~~~-~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCR--DA-T---S--LGYAYVNFQQPADAERALDTMNFDVLK-GKPIRIMWSQRDPS- 77 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEee--cC-C---c--cceEEEecCCHHHHHHHHHHcCCcccC-CcEEEeehhccCCc-
Confidence 56677766 55 899999998 33 2 4 499999999999999999999999999 99999986643110
Q ss_pred cCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 146 DVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 146 ~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++|-|++++++..+|.++|+.+|
T Consensus 78 ------------------------------------------~~~i~nl~~~~~~~~~~d~f~~~g 101 (369)
T KOG0123|consen 78 ------------------------------------------LVFIKNLDESIDNKSLYDTFSEFG 101 (369)
T ss_pred ------------------------------------------eeeecCCCcccCcHHHHHHHHhhc
Confidence 199999999999999999999987
No 41
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.03 E-value=1.1e-05 Score=79.47 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=61.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||++.++.|.| |. .|+.|++.+ +..++ ..+|+|||+|.+.++|..||..|||+.|. |+.|+|.++
T Consensus 208 fVgnLp~~vteedLk~lFs~FG~I~svrl~~--D~~tg---ksKGfGFVeFe~~e~A~kAI~amNg~elg-Gr~LrV~kA 281 (612)
T TIGR01645 208 YVASVHPDLSETDIKSVFEAFGEIVKCQLAR--APTGR---GHKGYGFIEYNNLQSQSEAIASMNLFDLG-GQYLRVGKC 281 (612)
T ss_pred EeecCCCCCCHHHHHHHHhhcCCeeEEEEEe--cCCCC---CcCCeEEEEECCHHHHHHHHHHhCCCeeC-CeEEEEEec
Confidence 48999999999986 55 999999998 43344 45899999999999999999999999999 999999988
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 75
No 42
>KOG0144|consensus
Probab=98.02 E-value=5.6e-06 Score=78.34 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=79.6
Q ss_pred cCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEee
Q psy17775 67 YYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~~ 138 (211)
|--+|...++.. ||. +|..|-++| |++++ ..+|||||.|-..+.|..|+..|++.+.+-| .++.|.|
T Consensus 39 VgqIprt~sE~dlr~lFe~yg~V~einl~k--Dk~t~---~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 39 VGQIPRTASEKDLRELFEKYGNVYEINLIK--DKSTG---QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred eccCCccccHHHHHHHHHHhCceeEEEeec--ccccC---cccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 555666666554 677 999999999 99999 6689999999999999999999999876634 3455544
Q ss_pred cCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 139 SKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 139 SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+.... .|| +=...|||-=|+..+||+++++||+++|
T Consensus 114 Ad~E~------------------------------------er~-~~e~KLFvg~lsK~~te~evr~iFs~fG 149 (510)
T KOG0144|consen 114 ADGER------------------------------------ERI-VEERKLFVGMLSKQCTENEVREIFSRFG 149 (510)
T ss_pred cchhh------------------------------------hcc-ccchhhhhhhccccccHHHHHHHHHhhC
Confidence 32211 122 1124699999999999999999999997
No 43
>smart00361 RRM_1 RNA recognition motif.
Probab=97.97 E-value=2.9e-05 Score=55.09 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=41.0
Q ss_pred cccceEee-Eec-CCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 80 YNSPVLDK-FIG-KPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 80 FnnV~rvK-~l~-~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
|..|.+|. ++. ++. -.+ .++|.|+|+|.+...|+.|+..|+|..+. |++|+++
T Consensus 16 fG~v~~v~~v~~~~~~-~~~---~~rG~~fV~f~~~~dA~~A~~~l~g~~~~-gr~l~~~ 70 (70)
T smart00361 16 FGEVGKINKIYIDNVG-YEN---HKRGNVYITFERSEDAARAIVDLNGRYFD-GRTVKAE 70 (70)
T ss_pred cCCeeEEEEEEeCCCC-CCC---CCcEEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEeC
Confidence 44788885 444 211 002 45899999999999999999999999999 9999863
No 44
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.95 E-value=1.8e-05 Score=70.78 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=58.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++++.| |+ .|++|.|++ ++ ..+|.|||+|.|..+|+.|| .|+|..|. |+.|+|+.+
T Consensus 8 fVgNLs~~tTE~dLrefFS~~G~I~~V~I~~--d~------~~~GfAFVtF~d~eaAe~Al-lLnG~~l~-gr~V~Vt~a 77 (260)
T PLN03120 8 KVSNVSLKATERDIKEFFSFSGDIEYVEMQS--EN------ERSQIAYVTFKDPQGAETAL-LLSGATIV-DQSVTITPA 77 (260)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEee--cC------CCCCEEEEEeCcHHHHHHHH-HhcCCeeC-CceEEEEec
Confidence 38899999999986 66 999999988 22 23699999999999999999 59999999 999999987
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
..-.
T Consensus 78 ~~~~ 81 (260)
T PLN03120 78 EDYQ 81 (260)
T ss_pred cCCC
Confidence 6443
No 45
>KOG1457|consensus
Probab=97.86 E-value=6.9e-05 Score=66.24 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=54.8
Q ss_pred ccCCCCCCCccccccc--------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecC--CceeE
Q psy17775 66 DYYGAPPAFEFERSYN--------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCN--GKRLA 135 (211)
Q Consensus 66 ~v~nl~~~i~~d~LFn--------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~--Gk~L~ 135 (211)
.|.|||..|+.-.|+| .=--+|.--|.+++ -+--|||.|.+...|+.|+..|||+.+-= ++.|+
T Consensus 38 FVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~------~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 38 FVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQV------CKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred eeccCCcccCHHHHHHHhccCCCccceeeeeccCCCcc------ccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 5999999999999877 33334444432221 12469999999999999999999998531 79999
Q ss_pred EeecCCccc
Q psy17775 136 VAYSKQVFL 144 (211)
Q Consensus 136 V~~SK~~~i 144 (211)
|.++|...-
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 999987554
No 46
>KOG0145|consensus
Probab=97.77 E-value=6e-05 Score=67.95 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=59.1
Q ss_pred cCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
||||-+..+.-- ||. .|+.||++| |.-++ .-+|.+||.|.+.+.|..||..|||..|- ++.|+|+|-.
T Consensus 283 vYNLspd~de~~LWQlFgpFGAv~nVKvir--D~ttn---kCKGfgFVtMtNYdEAamAi~sLNGy~lg-~rvLQVsFKt 356 (360)
T KOG0145|consen 283 VYNLSPDADESILWQLFGPFGAVTNVKVIR--DFTTN---KCKGFGFVTMTNYDEAAMAIASLNGYRLG-DRVLQVSFKT 356 (360)
T ss_pred EEecCCCchHhHHHHHhCcccceeeEEEEe--cCCcc---cccceeEEEecchHHHHHHHHHhcCcccc-ceEEEEEEec
Confidence 999988777665 465 999999999 66555 56899999999999999999999999999 9999999854
No 47
>KOG0122|consensus
Probab=97.73 E-value=6.7e-05 Score=66.73 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=64.3
Q ss_pred ccCCCCCCCccccc---c---ccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---Y---NSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---F---nnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||++.|+.+.| | .-|.||-+.+ ++.+| ..+|.|||.|.+.+.|.+||..|+|+-.. .--|+|.+|
T Consensus 193 RvtNLsed~~E~dL~eLf~~fg~i~rvylar--dK~TG---~~kGFAFVtF~sRddA~rAI~~LnG~gyd-~LILrvEws 266 (270)
T KOG0122|consen 193 RVTNLSEDMREDDLEELFRPFGPITRVYLAR--DKETG---LSKGFAFVTFESRDDAARAIADLNGYGYD-NLILRVEWS 266 (270)
T ss_pred EEecCccccChhHHHHHhhccCccceeEEEE--ccccC---cccceEEEEEecHHHHHHHHHHccCcccc-eEEEEEEec
Confidence 39999999999985 4 3999999998 88888 77899999999999999999999999988 899999999
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
|..
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 974
No 48
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.61 E-value=0.00011 Score=65.03 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=57.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||..+++++.| |+ .|+.|++++ ++ ...+.|+|.|.|..+|+.|+ .|+|..|- |++|.|...
T Consensus 9 ~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~--D~------et~gfAfVtF~d~~aaetAl-lLnGa~l~-d~~I~It~~ 78 (243)
T PLN03121 9 EVTNLSPKATEKDVYDFFSHCGAIEHVEIIR--SG------EYACTAYVTFKDAYALETAV-LLSGATIV-DQRVCITRW 78 (243)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCeEEEEEec--CC------CcceEEEEEECCHHHHHHHH-hcCCCeeC-CceEEEEeC
Confidence 48999999999986 66 999999998 33 33579999999999999999 79999999 999999865
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
-.
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 54
No 49
>KOG0108|consensus
Probab=97.55 E-value=0.00011 Score=69.90 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=66.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|-|++-.++.|.| |+ -|..+|+.. |+-+| ..+|.||++|.|.+.|++|++.|||..+. |.+|+|.|.
T Consensus 22 ~vgnip~~~se~~l~~~~~~~g~v~s~~~v~--D~~tG---~~~G~~f~~~~~~~~~~~a~~~lNg~~~~-gr~l~v~~~ 95 (435)
T KOG0108|consen 22 FVGNIPYEGSEEQLLSIFSGVGPVLSFRLVY--DRETG---KPKGFGFCEFTDEETAERAIRNLNGAEFN-GRKLRVNYA 95 (435)
T ss_pred EecCCCCcccHHHHHHHHhccCccceeeecc--cccCC---CcCceeeEecCchhhHHHHHHhcCCcccC-CceEEeecc
Confidence 47888888888886 66 999999998 88888 67899999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
......
T Consensus 96 ~~~~~~ 101 (435)
T KOG0108|consen 96 SNRKNA 101 (435)
T ss_pred cccchh
Confidence 876663
No 50
>KOG4207|consensus
Probab=97.49 E-value=0.00012 Score=64.00 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=60.8
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-||.-..+.|.| |. .|.-|-|=+ +.-+. ..+|.|||.|-|..+|+-|++.|+|..|- |+.|+|+++|
T Consensus 18 VdNLTyRTspd~LrrvFekYG~vgDVyIPr--dr~Tr---~sRgFaFVrf~~k~daedA~damDG~~ld-gRelrVq~ar 91 (256)
T KOG4207|consen 18 VDNLTYRTSPDDLRRVFEKYGRVGDVYIPR--DRYTR---QSRGFAFVRFHDKRDAEDALDAMDGAVLD-GRELRVQMAR 91 (256)
T ss_pred ecceeccCCHHHHHHHHHHhCcccceeccc--ccccc---cccceeEEEeeecchHHHHHHhhcceeec-cceeeehhhh
Confidence 6677767777764 76 777666665 55555 67899999999999999999999999999 9999999999
Q ss_pred Cccccc
Q psy17775 141 QVFLSD 146 (211)
Q Consensus 141 ~~~i~~ 146 (211)
..--.+
T Consensus 92 ygr~~d 97 (256)
T KOG4207|consen 92 YGRPSD 97 (256)
T ss_pred cCCCcc
Confidence 866543
No 51
>KOG0111|consensus
Probab=97.41 E-value=9.7e-05 Score=65.28 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=61.5
Q ss_pred cCCCCCCCccccc------cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS------YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L------FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-||-+.++..-| |.+|..|++=- +--|+ .-+|.|||+|.-.+.|..||+++|+..|| |+.|+|+|+|
T Consensus 15 VGGladeVtekvLhaAFIPFGDI~dIqiPl--Dyesq---kHRgFgFVefe~aEDAaaAiDNMnesEL~-GrtirVN~Ak 88 (298)
T KOG0111|consen 15 VGGLADEVTEKVLHAAFIPFGDIKDIQIPL--DYESQ---KHRGFGFVEFEEAEDAAAAIDNMNESELF-GRTIRVNLAK 88 (298)
T ss_pred eccchHHHHHHHHHhccccccchhhccccc--chhcc---cccceeEEEeeccchhHHHhhcCchhhhc-ceeEEEeecC
Confidence 5566666666554 44999999855 44444 55899999999999999999999999999 9999999999
Q ss_pred Cccccc
Q psy17775 141 QVFLSD 146 (211)
Q Consensus 141 ~~~i~~ 146 (211)
...|..
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 998875
No 52
>KOG0125|consensus
Probab=97.35 E-value=0.0004 Score=64.10 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=58.7
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|+|+|-++-...| |. -|+.|.|++..+| + ||..||.|+++..|+||-..|+|..+- |++|+|+-+.
T Consensus 101 VSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG------S-KGFGFVTmen~~dadRARa~LHgt~VE-GRkIEVn~AT 172 (376)
T KOG0125|consen 101 VSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG------S-KGFGFVTMENPADADRARAELHGTVVE-GRKIEVNNAT 172 (376)
T ss_pred eecCCccccCccHHHHHHhhCceeeEEEEeccCC------C-CccceEEecChhhHHHHHHHhhcceee-ceEEEEeccc
Confidence 9999987766654 54 9999999995555 4 799999999999999999999999999 9999999876
Q ss_pred Cc
Q psy17775 141 QV 142 (211)
Q Consensus 141 ~~ 142 (211)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 53
>PLN03213 repressor of silencing 3; Provisional
Probab=97.24 E-value=0.00041 Score=67.23 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=60.7
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCH--HHHHHHHHHhCCceecCCceeEEee
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDT--LSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~--~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
|-||...++.+.| |. .|.+|+|++. ..+|.|||.|... .+++.||..|+|..+. |..|+|.-
T Consensus 15 VGNLSydVTEDDLravFSeFGsVkdVEIpRE---------TGRGFAFVEMssdddaEeeKAISaLNGAEWK-GR~LKVNK 84 (759)
T PLN03213 15 VGGLGESVGRDDLLKIFSPMGTVDAVEFVRT---------KGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK-GGRLRLEK 84 (759)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEecc---------cCCceEEEEecCCcHHHHHHHHHHhcCCeec-CceeEEee
Confidence 7889999999986 66 9999999972 2289999999987 7899999999999999 99999999
Q ss_pred cCCcccc
Q psy17775 139 SKQVFLS 145 (211)
Q Consensus 139 SK~~~i~ 145 (211)
+|..++.
T Consensus 85 AKP~YLe 91 (759)
T PLN03213 85 AKEHYLA 91 (759)
T ss_pred ccHHHHH
Confidence 9987764
No 54
>KOG4208|consensus
Probab=97.23 E-value=0.00054 Score=59.54 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=49.1
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCc
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQV 142 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~ 142 (211)
.|.|+.+-| ++.+| +.+|+|||+|++.+-|..|-+-+|+..|| |+.|++.|=...
T Consensus 76 ~v~r~rlsR--nkrTG---NSKgYAFVEFEs~eVA~IaAETMNNYLl~-e~lL~c~vmppe 130 (214)
T KOG4208|consen 76 TVTRFRLSR--NKRTG---NSKGYAFVEFESEEVAKIAAETMNNYLLM-EHLLECHVMPPE 130 (214)
T ss_pred eeEEEEeec--ccccC---CcCceEEEEeccHHHHHHHHHHhhhhhhh-hheeeeEEeCch
Confidence 566666668 88899 89999999999999999999999999999 999999886655
No 55
>KOG0127|consensus
Probab=97.13 E-value=0.0016 Score=63.56 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=86.7
Q ss_pred ccCCCCCCCccccc---cccc--eEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YNSP--VLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---FnnV--~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
.|.+||..++-+.| |++| ++.-++-.+.|-+ .++|.+||.|+=.+.+++|+..+.+..|. |..|+|.+++
T Consensus 9 fV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~----~~RGfgfVtFam~ED~qrA~~e~~~~kf~-Gr~l~v~~A~ 83 (678)
T KOG0127|consen 9 FVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSS----EKRGFGFVTFAMEEDVQRALAETEQSKFE-GRILNVDPAK 83 (678)
T ss_pred EEecCCCccchhHHHHhhhcccCcceeEEecCCCcc----cccCccceeeehHhHHHHHHHHhhcCccc-ceeccccccc
Confidence 47888887777765 7733 3444444333322 56999999999999999999999999999 9999999998
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..-.. +...|..... .-++..+ .+.+-.+--|-.-|.|-|||-.+.+++|..+|+++|
T Consensus 84 ~R~r~e-----~~~~~e~~~v------eK~~~q~-~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G 142 (678)
T KOG0127|consen 84 KRARSE-----EVEKGENKAV------EKPIEQK-RPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG 142 (678)
T ss_pred ccccch-----hcccccchhh------hcccccC-CcchhhccCccceEEeecCCcccCcHHHHHHHhhcc
Confidence 865431 1111111100 0011111 011112233345799999999999999999999987
No 56
>KOG0130|consensus
Probab=96.99 E-value=0.00063 Score=56.29 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=53.5
Q ss_pred cCCCCCCCccccc---cccceEeeEecCC-CCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPPAFEFERS---YNSPVLDKFIGKP-RGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~~i~~d~L---FnnV~rvK~l~~~-~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|.|+++..+.|.+ |.+-=.||.|.-| ++-+| --+|+|||+|+...+|+.||+.|||..|. |+.+.|.++
T Consensus 77 VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtG---y~KGYaLvEYet~keAq~A~~~~Ng~~ll-~q~v~VDw~ 149 (170)
T KOG0130|consen 77 VTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTG---YVKGYALVEYETLKEAQAAIDALNGAELL-GQNVSVDWC 149 (170)
T ss_pred EeccCcchhHHHHHHHHhhcccccceeeccccccc---cccceeeeehHhHHHHHHHHHhccchhhh-CCceeEEEE
Confidence 8899988777764 6644455554311 33344 45799999999999999999999999999 999998654
No 57
>KOG0132|consensus
Probab=96.93 E-value=0.0012 Score=66.56 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=59.4
Q ss_pred cCCCCCCCccccc------cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS------YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L------FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-+|+.+|+...| |..|++|+++. + +|||||.|-....|++|++.|+.+.+- +|.|+|..+-
T Consensus 426 vG~i~k~v~e~dL~~~feefGeiqSi~li~----------~-R~cAfI~M~~RqdA~kalqkl~n~kv~-~k~Iki~Wa~ 493 (894)
T KOG0132|consen 426 VGGIPKNVTEQDLANLFEEFGEIQSIILIP----------P-RGCAFIKMVRRQDAEKALQKLSNVKVA-DKTIKIAWAV 493 (894)
T ss_pred eccccchhhHHHHHHHHHhcccceeEeecc----------C-CceeEEEEeehhHHHHHHHHHhccccc-ceeeEEeeec
Confidence 6778888888876 44999999999 5 899999999999999999999999999 9999999887
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
..-+.
T Consensus 494 g~G~k 498 (894)
T KOG0132|consen 494 GKGPK 498 (894)
T ss_pred cCCcc
Confidence 76655
No 58
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.80 E-value=0.0011 Score=50.50 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=40.1
Q ss_pred ccCCCCCCCccccc-------cc----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCcee
Q psy17775 66 DYYGAPPAFEFERS-------YN----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRL 134 (211)
Q Consensus 66 ~v~nl~~~i~~d~L-------Fn----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L 134 (211)
.|||||...+...+ +. .|+.| - .++|.|.|...+.|++|..-|+|--+| |.+|
T Consensus 6 ~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~------------~~tAilrF~~~~~A~RA~KRmegEdVf-G~kI 69 (90)
T PF11608_consen 6 YVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---S------------GGTAILRFPNQEFAERAQKRMEGEDVF-GNKI 69 (90)
T ss_dssp EEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------TT-EEEEESSHHHHHHHHHHHTT--SS-SS--
T ss_pred EEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---e------------CCEEEEEeCCHHHHHHHHHhhcccccc-cceE
Confidence 38899887766543 33 44443 2 499999999999999999999999999 9999
Q ss_pred EEeecCCccc
Q psy17775 135 AVAYSKQVFL 144 (211)
Q Consensus 135 ~V~~SK~~~i 144 (211)
.|.|++...+
T Consensus 70 ~v~~~~~~r~ 79 (90)
T PF11608_consen 70 SVSFSPKNRE 79 (90)
T ss_dssp EEESS--S--
T ss_pred EEEEcCCccc
Confidence 9999966554
No 59
>KOG1548|consensus
Probab=96.80 E-value=0.0018 Score=60.20 Aligned_cols=71 Identities=21% Similarity=0.176 Sum_probs=62.4
Q ss_pred cCCCCCCCcccc---ccc-----------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCc
Q psy17775 67 YYGAPPAFEFER---SYN-----------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGK 132 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn-----------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk 132 (211)
|+|||..|+.|. +|+ .=-+||+.+-++| .-+|-||+-|--.+++++|+.+|++..|- |+
T Consensus 139 VsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G------~lKGDaLc~y~K~ESVeLA~~ilDe~~~r-g~ 211 (382)
T KOG1548|consen 139 VSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQG------KLKGDALCCYIKRESVELAIKILDEDELR-GK 211 (382)
T ss_pred ecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCC------CccCceEEEeecccHHHHHHHHhCccccc-Cc
Confidence 899999999997 455 4568999996666 77899999999999999999999999999 99
Q ss_pred eeEEeecCCccc
Q psy17775 133 RLAVAYSKQVFL 144 (211)
Q Consensus 133 ~L~V~~SK~~~i 144 (211)
+|+|.-+|.+.-
T Consensus 212 ~~rVerAkfq~K 223 (382)
T KOG1548|consen 212 KLRVERAKFQMK 223 (382)
T ss_pred EEEEehhhhhhc
Confidence 999999887543
No 60
>KOG0126|consensus
Probab=96.76 E-value=0.00082 Score=57.91 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=57.5
Q ss_pred cCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 67 YYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
+-|||-.++... +|+ .|+-|-+++ ++-+| ..+|.||.-|+|--+--+|+++|||+.|. |..|+|..
T Consensus 40 iggl~~~LtEgDil~VFSqyGe~vdinLiR--Dk~TG---KSKGFaFLcYEDQRSTILAVDN~NGiki~-gRtirVDH 111 (219)
T KOG0126|consen 40 IGGLPYELTEGDILCVFSQYGEIVDINLIR--DKKTG---KSKGFAFLCYEDQRSTILAVDNLNGIKIL-GRTIRVDH 111 (219)
T ss_pred ECCCcccccCCcEEEEeeccCceEEEEEEe--cCCCC---cccceEEEEecCccceEEEEeccCCceec-ceeEEeee
Confidence 556776777776 477 899999999 88888 77999999999999999999999999999 99999964
No 61
>KOG0124|consensus
Probab=96.64 E-value=0.0023 Score=60.20 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=59.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCC
Q psy17775 101 GPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKN 180 (211)
Q Consensus 101 ~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn 180 (211)
.-+|.|||+|+=++.|++|++.+||..|- |+-|+|. +..++.. -+|. . |-.. .+..++|
T Consensus 153 kHKgFAFVEYEvPEaAqLAlEqMNg~mlG-GRNiKVg--rPsNmpQ-AQpi--------I-D~vq--------eeAk~fn 211 (544)
T KOG0124|consen 153 KHKGFAFVEYEVPEAAQLALEQMNGQMLG-GRNIKVG--RPSNMPQ-AQPI--------I-DMVQ--------EEAKKFN 211 (544)
T ss_pred cccceEEEEEeCcHHHHHHHHHhcccccc-Ccccccc--CCCCCcc-cchH--------H-HHHH--------HHHHhhh
Confidence 45899999999999999999999999999 9999986 2222210 1111 0 0000 0112334
Q ss_pred CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-+|++-+-++.+|+||+.+|+.+|
T Consensus 212 -------RiYVaSvHpDLSe~DiKSVFEAFG 235 (544)
T KOG0124|consen 212 -------RIYVASVHPDLSETDIKSVFEAFG 235 (544)
T ss_pred -------eEEeeecCCCccHHHHHHHHHhhc
Confidence 478889999999999999999887
No 62
>KOG0148|consensus
Probab=96.46 E-value=0.0063 Score=55.21 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=57.8
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-|+..-++.|.| |+ .|.-|++++ . +|+|||.|...++|..||-++||..+. |+..+...-|
T Consensus 169 ~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk----------~-qGYaFVrF~tkEaAahAIv~mNntei~-G~~VkCsWGK 236 (321)
T KOG0148|consen 169 VGNIASGLTEDLMRQTFSPFGPIQEVRVFK----------D-QGYAFVRFETKEAAAHAIVQMNNTEIG-GQLVRCSWGK 236 (321)
T ss_pred eCCcCccccHHHHHHhcccCCcceEEEEec----------c-cceEEEEecchhhHHHHHHHhcCceeC-ceEEEEeccc
Confidence 4455555666653 66 999999999 6 799999999999999999999999999 9999999999
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
...+.
T Consensus 237 e~~~~ 241 (321)
T KOG0148|consen 237 EGDDG 241 (321)
T ss_pred cCCCC
Confidence 87765
No 63
>KOG4205|consensus
Probab=96.27 E-value=0.0078 Score=55.21 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=75.9
Q ss_pred CCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCC
Q psy17775 68 YGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141 (211)
Q Consensus 68 ~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~ 141 (211)
-+|.-..+.|.| |. .|..+++|+ +..++ .++|..+|+|+++..+.+++. ..-+.|- |+.+++.-+-.
T Consensus 12 Ggisw~ttee~Lr~yf~~~Gev~d~~vm~--d~~t~---rsrgFgfv~f~~~~~v~~vl~-~~~h~~d-gr~ve~k~av~ 84 (311)
T KOG4205|consen 12 GGLSWETTEESLREYFSQFGEVTDCVVMR--DPSTG---RSRGFGFVTFATPEGVDAVLN-ARTHKLD-GRSVEPKRAVS 84 (311)
T ss_pred cCcCccccHHHHHHHhcccCceeeEEEec--cCCCC---CcccccceecCCCcchheeec-ccccccC-CccccceeccC
Confidence 344445566665 33 999999999 66665 678999999999999998884 4445555 88888764444
Q ss_pred cccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 142 VFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 142 ~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..... +......++.+++=.||.+++|++|++.|+++|
T Consensus 85 r~~~~--------------------------------~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g 122 (311)
T KOG4205|consen 85 REDQT--------------------------------KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFG 122 (311)
T ss_pred ccccc--------------------------------ccccccceeEEEecCcCCCCchHHHhhhhhccc
Confidence 33321 000111578999999999999999999999886
No 64
>KOG0105|consensus
Probab=96.25 E-value=0.023 Score=49.43 Aligned_cols=120 Identities=22% Similarity=0.148 Sum_probs=77.0
Q ss_pred cCCCCCCCcc---ccccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEF---ERSYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~---d~LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-|||..|-. +.||- -|+-|.+ | +.. ..+..|||+|+|+-.|+-||---+|.-+- |..|+|.|.+
T Consensus 11 vGNLP~diRekeieDlFyKyg~i~~ieL-K-~r~------g~ppfafVeFEd~RDAeDAiygRdGYdyd-g~rLRVEfpr 81 (241)
T KOG0105|consen 11 VGNLPGDIREKEIEDLFYKYGRIREIEL-K-NRP------GPPPFAFVEFEDPRDAEDAIYGRDGYDYD-GCRLRVEFPR 81 (241)
T ss_pred ecCCCcchhhccHHHHHhhhcceEEEEe-c-cCC------CCCCeeEEEecCccchhhhhhcccccccC-cceEEEEecc
Confidence 6788886644 45777 4444432 2 111 45789999999999999999999999987 9999999887
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcc----eEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQ----LLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~----~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.---. .|--++...|=.- .-....+..||++ -+.++.||+.-+=.||+++.-+.|
T Consensus 82 ggr~s---------------~~~~G~y~gggrg-Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG 140 (241)
T KOG0105|consen 82 GGRSS---------------SDRRGSYSGGGRG-GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG 140 (241)
T ss_pred CCCcc---------------cccccccCCCCCC-CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC
Confidence 64311 1111111111000 0011112345543 477899999999999998876654
No 65
>KOG0109|consensus
Probab=96.23 E-value=0.0057 Score=55.96 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=53.0
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-|+-++.+-+.| |. -|+-++|.+ +.|||.|+-.+.|..||+-|+|..+. ||+|+|..|.
T Consensus 83 vgNis~tctn~ElRa~fe~ygpviecdivk-------------dy~fvh~d~~eda~~air~l~~~~~~-gk~m~vq~st 148 (346)
T KOG0109|consen 83 VGNISPTCTNQELRAKFEKYGPVIECDIVK-------------DYAFVHFDRAEDAVEAIRGLDNTEFQ-GKRMHVQLST 148 (346)
T ss_pred cCCCCccccCHHHhhhhcccCCceeeeeec-------------ceeEEEEeeccchHHHHhcccccccc-cceeeeeeec
Confidence 6666665555553 66 899999999 89999999999999999999999999 9999999986
Q ss_pred C
Q psy17775 141 Q 141 (211)
Q Consensus 141 ~ 141 (211)
.
T Consensus 149 s 149 (346)
T KOG0109|consen 149 S 149 (346)
T ss_pred c
Confidence 5
No 66
>KOG0113|consensus
Probab=96.12 E-value=0.012 Score=53.85 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=54.8
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccc
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLS 145 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~ 145 (211)
.|.+|.+++ ++++| ..+|+|||+|.+.-....|-.+..|.+|- |+.|-|.|-+...+.
T Consensus 127 ~IkrirlV~--d~vTg---kskGYAFIeye~erdm~~AYK~adG~~Id-grri~VDvERgRTvk 184 (335)
T KOG0113|consen 127 PIKRIRLVR--DKVTG---KSKGYAFIEYEHERDMKAAYKDADGIKID-GRRILVDVERGRTVK 184 (335)
T ss_pred cceeEEEee--ecccC---CccceEEEEeccHHHHHHHHHhccCceec-CcEEEEEeccccccc
Confidence 999999999 99999 77899999999999999999999999999 999999999988775
No 67
>KOG0147|consensus
Probab=95.99 E-value=0.012 Score=57.41 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=55.7
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|.|||..|+.|+| |+ .|+.|-..+ +--+| ..+|++||||.+.+.|..|+..|||+.|- |..|+|+.=
T Consensus 283 vgnLHfNite~~lr~ifepfg~Ie~v~l~~--d~~tG---~skgfGfi~f~~~~~ar~a~e~lngfelA-Gr~ikV~~v 355 (549)
T KOG0147|consen 283 VGNLHFNITEDMLRGIFEPFGKIENVQLTK--DSETG---RSKGFGFITFVNKEDARKALEQLNGFELA-GRLIKVSVV 355 (549)
T ss_pred hcccccCchHHHHhhhccCcccceeeeecc--ccccc---cccCcceEEEecHHHHHHHHHHhccceec-CceEEEEEe
Confidence 7899999999985 55 777777776 22123 45799999999999999999999999999 999998753
No 68
>KOG0131|consensus
Probab=95.91 E-value=0.0088 Score=51.50 Aligned_cols=72 Identities=15% Similarity=0.287 Sum_probs=58.3
Q ss_pred cCCCCCCCccccc---cc----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPPAFEFERS---YN----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|-||.+.||...| |+ -+.-=|+|+ +--+| +++|.|+|-+++-+++++||..++|..|+ ..++.|.|+
T Consensus 101 vgNLd~~vDe~~L~dtFsafG~l~~~P~i~r--d~~tg---~~~~~g~i~~~sfeasd~ai~s~ngq~l~-nr~itv~ya 174 (203)
T KOG0131|consen 101 VGNLDPEVDEKLLYDTFSAFGVLISPPKIMR--DPDTG---NPKGFGFINYASFEASDAAIGSMNGQYLC-NRPITVSYA 174 (203)
T ss_pred ccccCcchhHHHHHHHHHhccccccCCcccc--cccCC---CCCCCeEEechhHHHHHHHHHHhccchhc-CCceEEEEE
Confidence 7888888887765 66 333348888 33334 77899999999999999999999999999 999999998
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+...-
T Consensus 175 ~k~~~ 179 (203)
T KOG0131|consen 175 FKKDT 179 (203)
T ss_pred EecCC
Confidence 86543
No 69
>KOG4454|consensus
Probab=95.83 E-value=0.0034 Score=55.51 Aligned_cols=68 Identities=7% Similarity=-0.220 Sum_probs=54.5
Q ss_pred cCCCCCCCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-|+-++++++-||. =|+||+|-.--++ +. -.|+|.|.|..++..|++.+||..|| |..++|++--
T Consensus 14 v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~------~~-kFa~v~f~~E~sv~~a~~L~ng~~l~-~~e~q~~~r~ 85 (267)
T KOG4454|consen 14 VQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ------EQ-KFAYVFFPNENSVQLAGQLENGDDLE-EDEEQRTLRC 85 (267)
T ss_pred HHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC------CC-ceeeeecccccchhhhhhhcccchhc-cchhhccccc
Confidence 667777888887765 6788888661111 33 38999999999999999999999999 9999998765
Q ss_pred Cc
Q psy17775 141 QV 142 (211)
Q Consensus 141 ~~ 142 (211)
..
T Consensus 86 G~ 87 (267)
T KOG4454|consen 86 GN 87 (267)
T ss_pred CC
Confidence 54
No 70
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.75 E-value=0.01 Score=48.21 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=26.4
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+.-.+..|||.|||.++||++|+++|+++|
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G 59 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFG 59 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCC
Confidence 344567899999999999999999999987
No 71
>KOG0146|consensus
Probab=95.68 E-value=0.016 Score=52.81 Aligned_cols=58 Identities=21% Similarity=0.405 Sum_probs=49.3
Q ss_pred cccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEeecCC
Q psy17775 78 RSYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVAYSKQ 141 (211)
Q Consensus 78 ~LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~~SK~ 141 (211)
+||. .+..|-.|+-++| ..||||||.|.....|+.||+.|+|..-.-| ..|.|.|+..
T Consensus 38 rlf~pfG~~~e~tvlrg~dg------~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADT 100 (371)
T KOG0146|consen 38 RLFQPFGNIEECTVLRGPDG------NSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 100 (371)
T ss_pred HHhcccCCcceeEEecCCCC------CCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccc
Confidence 4666 9999999996666 7789999999999999999999999765435 6688888865
No 72
>KOG0144|consensus
Probab=95.60 E-value=0.0093 Score=57.01 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=52.9
Q ss_pred cccccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEeecCCccccc
Q psy17775 76 FERSYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVAYSKQVFLSD 146 (211)
Q Consensus 76 ~d~LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~~SK~~~i~~ 146 (211)
+..||. -|+-|.|||-+++ ..+|||||+|...+.|..||..|||..-..| .+|-|.|+..+-+.+
T Consensus 141 vr~iFs~fG~Ied~~ilrd~~~------~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 141 VREIFSRFGHIEDCYILRDPDG------LSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHhhCccchhhheecccc------cccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 334666 7999999996666 5689999999999999999999999654325 789999997766653
No 73
>KOG0147|consensus
Probab=95.55 E-value=0.0093 Score=58.08 Aligned_cols=97 Identities=29% Similarity=0.223 Sum_probs=70.2
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccccCCCCccCCCCCCccc
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFK 161 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~k 161 (211)
-|.-|.++. +.-|+ .++|-|.|+|.|..++..|| .|+|..|. |.+|-|..+--
T Consensus 205 kVrdVriI~--Dr~s~---rskgi~Yvef~D~~sVp~ai-aLsGqrll-g~pv~vq~sEa-------------------- 257 (549)
T KOG0147|consen 205 KVRDVRIIG--DRNSR---RSKGIAYVEFCDEQSVPLAI-ALSGQRLL-GVPVIVQLSEA-------------------- 257 (549)
T ss_pred CcceeEeec--cccch---hhcceeEEEEecccchhhHh-hhcCCccc-CceeEecccHH--------------------
Confidence 777777777 66666 67999999999999999999 69999999 99999864311
Q ss_pred ccccCcccccCCchhc--cCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 162 DFTGSRKNRFMNPKMA--MKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 162 dfs~s~~nRf~~~~~~--~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.||-.+...+ .|- ..-|-.-||+.||-.++||++|+.+|+.+|
T Consensus 258 -----eknr~a~~s~a~~~k~-~~~p~~rl~vgnLHfNite~~lr~ifepfg 303 (549)
T KOG0147|consen 258 -----EKNRAANASPALQGKG-FTGPMRRLYVGNLHFNITEDMLRGIFEPFG 303 (549)
T ss_pred -----HHHHHHhccccccccc-cccchhhhhhcccccCchHHHHhhhccCcc
Confidence 11221111011 011 122333399999999999999999999876
No 74
>KOG0121|consensus
Probab=95.34 E-value=0.017 Score=47.50 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=53.8
Q ss_pred cCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|.||--..++|+ ||+ +|.||-+=- +++.- ..=|-|||+|-....|+.|+++|+|+.|- .++|+|..-
T Consensus 41 VgNlSfyttEEqiyELFs~cG~irriiMGL--dr~kk---tpCGFCFVeyy~~~dA~~AlryisgtrLd-dr~ir~D~D 113 (153)
T KOG0121|consen 41 VGNLSFYTTEEQIYELFSKCGDIRRIIMGL--DRFKK---TPCGFCFVEYYSRDDAEDALRYISGTRLD-DRPIRIDWD 113 (153)
T ss_pred EeeeeeeecHHHHHHHHHhccchheeEecc--ccCCc---CccceEEEEEecchhHHHHHHHhccCccc-ccceeeecc
Confidence 778877888887 577 888776522 33333 45599999999999999999999999999 999999753
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=94.93 E-value=0.023 Score=37.27 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=22.4
Q ss_pred eEEeecCCCCCCHHHHHhhhccCC
Q psy17775 188 LLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 188 ~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+|++.|+|.++++++|.++|.++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g 24 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFG 24 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcC
Confidence 489999999999999999999887
No 76
>KOG0146|consensus
Probab=94.83 E-value=0.022 Score=51.90 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=58.9
Q ss_pred cCCCCCCCccccc------cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS------YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L------FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
+|.||..+.--.| |..|+.-|++- |+.++ -.|=..||-|+++.+|+.||+.+||+.|- =|+|+|..-+
T Consensus 290 IYHLPQEFgDaEliQmF~PFGhivSaKVFv--DRATN---QSKCFGFVSfDNp~SaQaAIqAMNGFQIG-MKRLKVQLKR 363 (371)
T KOG0146|consen 290 IYHLPQEFGDAELIQMFLPFGHIVSAKVFV--DRATN---QSKCFGFVSFDNPASAQAAIQAMNGFQIG-MKRLKVQLKR 363 (371)
T ss_pred EEeCchhhccHHHHHHhccccceeeeeeee--hhccc---cccceeeEecCCchhHHHHHHHhcchhhh-hhhhhhhhcC
Confidence 8999875544332 55999999988 67666 55788999999999999999999999998 8999998766
Q ss_pred Cccc
Q psy17775 141 QVFL 144 (211)
Q Consensus 141 ~~~i 144 (211)
....
T Consensus 364 Pkda 367 (371)
T KOG0146|consen 364 PKDA 367 (371)
T ss_pred cccc
Confidence 5543
No 77
>KOG0106|consensus
Probab=94.61 E-value=0.031 Score=48.95 Aligned_cols=89 Identities=26% Similarity=0.282 Sum_probs=61.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCC
Q psy17775 101 GPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKN 180 (211)
Q Consensus 101 ~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn 180 (211)
+|.|.+||.|.|...|+-||.-|+|..|. |.++.|.+.+...-.. |++-.-| |.. ...
T Consensus 33 mk~gf~fv~fed~rda~Dav~~l~~~~l~-~e~~vve~~r~~~~~~---------g~~~~g~-------r~~-----~~~ 90 (216)
T KOG0106|consen 33 MKNGFGFVEFEDPRDADDAVHDLDGKELC-GERLVVEHARGKRRGR---------GRPRGGD-------RRS-----DSR 90 (216)
T ss_pred eecccceeccCchhhhhcccchhcCceec-ceeeeeeccccccccc---------CCCCCCC-------ccc-----hhh
Confidence 45688899999999999999999999999 9888888777432220 1111000 000 011
Q ss_pred CCCCCc---ceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPS---QLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs---~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..+|+ -.|.+.|+...+...+|.+.|...|
T Consensus 91 ~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g 124 (216)
T KOG0106|consen 91 RYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG 124 (216)
T ss_pred ccCCcccccceeeeccchhhhhHHHHhhhhcccC
Confidence 233333 3577888999999999999998876
No 78
>KOG0114|consensus
Probab=94.48 E-value=0.033 Score=44.37 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=24.9
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+.+|+|-|||-+||.|++-+||+++|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg 43 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYG 43 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhccc
Confidence 57999999999999999999999997
No 79
>KOG4206|consensus
Probab=94.16 E-value=0.071 Score=46.90 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=55.5
Q ss_pred cCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
+.|||+..+.+. ||+ --..|.++. ..+|-|||+|.+..+|..|.+.|+|+.+--..+|+|+|+|
T Consensus 151 ~~niP~es~~e~l~~lf~qf~g~keir~i~----------~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 151 LTNIPSESESEMLSDLFEQFPGFKEIRLIP----------PRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EecCCcchhHHHHHHHHhhCcccceeEecc----------CCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 788988777765 566 777888888 8899999999999999999999999998647789999887
No 80
>KOG4212|consensus
Probab=93.94 E-value=0.11 Score=50.24 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=51.9
Q ss_pred cCCCCCCCc---cccccc----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 67 YYGAPPAFE---FERSYN----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 67 v~nl~~~i~---~d~LFn----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
+.|+|-... ...||- .|+-|.+|.-..+ ..+|||.|+|.|++.++.|++.||.+.+- |.+|.|.
T Consensus 49 ItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~G------K~rGcavVEFk~~E~~qKa~E~lnk~~~~-GR~l~vK 119 (608)
T KOG4212|consen 49 ITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESG------KARGCAVVEFKDPENVQKALEKLNKYEVN-GRELVVK 119 (608)
T ss_pred EecCcchhhhHhHHHHHHHhcCceEeeeeecccCC------CcCCceEEEeeCHHHHHHHHHHhhhcccc-CceEEEe
Confidence 566664333 334566 8999999984334 56899999999999999999999999999 9999995
No 81
>KOG4211|consensus
Probab=93.88 E-value=0.3 Score=47.45 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=70.5
Q ss_pred cCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCC
Q psy17775 67 YYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~ 141 (211)
+.+||=..+.+.| |. .|+.+++-+.+ | ...|.|+|+|...+.++.|+. ++...|- -.=|+|--+..
T Consensus 15 ~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~----G---r~sGeA~Ve~~seedv~~Alk-kdR~~mg-~RYIEVf~~~~ 85 (510)
T KOG4211|consen 15 LRGLPWSATEKEILDFFSNCGIENLEIPRRN----G---RPSGEAYVEFTSEEDVEKALK-KDRESMG-HRYIEVFTAGG 85 (510)
T ss_pred ecCCCccccHHHHHHHHhcCceeEEEEeccC----C---CcCcceEEEeechHHHHHHHH-hhHHHhC-CceEEEEccCC
Confidence 6788877777765 55 89998888822 3 245999999999999999996 5555554 44466643322
Q ss_pred cccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhc
Q psy17775 142 VFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISG 208 (211)
Q Consensus 142 ~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~ 208 (211)
... + ..+.-+. + +--.+.-++-+-.||-.|||+||.+.|+
T Consensus 86 ~e~-d----~~~~~~g----------------~------~s~~~d~vVRLRGLPfscte~dI~~FFa 125 (510)
T KOG4211|consen 86 AEA-D----WVMRPGG----------------P------NSSANDGVVRLRGLPFSCTEEDIVEFFA 125 (510)
T ss_pred ccc-c----ccccCCC----------------C------CCCCCCceEEecCCCccCcHHHHHHHhc
Confidence 221 1 0000000 0 0002346899999999999999999986
No 82
>KOG1995|consensus
Probab=93.77 E-value=0.036 Score=51.64 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=56.9
Q ss_pred ccCCCCCCCccccccc---cce-----------EeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC
Q psy17775 66 DYYGAPPAFEFERSYN---SPV-----------LDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG 131 (211)
Q Consensus 66 ~v~nl~~~i~~d~LFn---nV~-----------rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G 131 (211)
.|++|+..++.+.||- .|- +|++-+ ++-++ ..+|.|+|-+.|..+|+.||.++++..++ |
T Consensus 70 ~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~--dkeT~---~~KGeatvS~~D~~~akaai~~~agkdf~-g 143 (351)
T KOG1995|consen 70 FVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYT--DKETG---APKGEATVSYEDPPAAKAAIEWFAGKDFC-G 143 (351)
T ss_pred eeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccc--ccccc---CcCCceeeeecChhhhhhhhhhhcccccc-C
Confidence 3899999998888765 222 233333 44455 56899999999999999999999999999 9
Q ss_pred ceeEEeecCCcc
Q psy17775 132 KRLAVAYSKQVF 143 (211)
Q Consensus 132 k~L~V~~SK~~~ 143 (211)
.+|+|.++.-..
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998886655
No 83
>KOG0151|consensus
Probab=93.68 E-value=0.092 Score=53.06 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=63.2
Q ss_pred cCCCCCCCccccc---c---ccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---Y---NSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---F---nnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+++|+.+.| | .=|..||||. |+.---.. ....|+||-|.+...|++|+.+|+|..++ +-+|++-++|
T Consensus 179 v~Nlnpsv~E~~ll~tfGrfgPlasvKimw-pRtEeEk~-r~r~cgfvafmnR~D~era~k~lqg~iv~-~~e~K~gWgk 255 (877)
T KOG0151|consen 179 VGNLNPSVDENFLLRTFGRFGPLASVKIMW-PRTEEEKR-RERNCGFVAFMNRADAERALKELQGIIVM-EYEMKLGWGK 255 (877)
T ss_pred eecCCccccHHHHHHHhcccCcccceeeec-ccchhhhc-cccccceeeehhhhhHHHHHHHhcceeee-eeeeeecccc
Confidence 7899999999986 4 4899999997 21111101 23689999999999999999999999999 9999999999
Q ss_pred Cccccc
Q psy17775 141 QVFLSD 146 (211)
Q Consensus 141 ~~~i~~ 146 (211)
...|..
T Consensus 256 ~V~ip~ 261 (877)
T KOG0151|consen 256 AVPIPN 261 (877)
T ss_pred ccccCC
Confidence 888764
No 84
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=93.54 E-value=0.069 Score=43.15 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=24.8
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+|+|.|||.++|+++|.++|.++|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g 140 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFG 140 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC
Confidence 68999999999999999999999987
No 85
>KOG4212|consensus
Probab=93.48 E-value=0.072 Score=51.37 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=50.5
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
|.|||-..+-..| |+ .|.-..||. +-+....|.|..++.|++|+..++|..|- |+-|.|.|
T Consensus 541 irNlP~dfTWqmlrDKfre~G~v~yadime----------~GkskGVVrF~s~edAEra~a~Mngs~l~-Gr~I~V~y 607 (608)
T KOG4212|consen 541 IRNLPFDFTWQMLRDKFREIGHVLYADIME----------NGKSKGVVRFFSPEDAERACALMNGSRLD-GRNIKVTY 607 (608)
T ss_pred EecCCccccHHHHHHHHHhccceehhhhhc----------cCCccceEEecCHHHHHHHHHHhccCccc-Cceeeeee
Confidence 7777776666655 66 788888887 44455589999999999999999999999 99999987
No 86
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.23 E-value=0.23 Score=41.12 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=38.8
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccc
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLS 145 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~ 145 (211)
+|+-|+|.. ++-||.|.|+.+|-.|+. |+|..+. |+.|+|..-...-+.
T Consensus 62 evvLvRfv~-------------~~mwVTF~dg~sALaals-~dg~~v~-g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 62 EVVLVRFVG-------------DTMWVTFRDGQSALAALS-LDGIQVN-GRTLKIRLKTPDWLK 110 (146)
T ss_dssp -ECEEEEET-------------TCEEEEESSCHHHHHHHH-GCCSEET-TEEEEEEE-------
T ss_pred ceEEEEEeC-------------CeEEEEECccHHHHHHHc-cCCcEEC-CEEEEEEeCCccHHH
Confidence 999999998 799999999999999995 9999999 999999876554443
No 87
>KOG0120|consensus
Probab=93.20 E-value=0.1 Score=50.89 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=52.4
Q ss_pred cCCCCCCCcccc------ccccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFER------SYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~------LFnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
+.||+..++.|. +|+......+.+ +-..| +.+|+||-+|.|+.-.+.|+..|||..|. +++|.|..+=
T Consensus 294 v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~--d~~~g---~skg~af~ey~dpsvtd~A~agLnGm~lg-d~~lvvq~A~ 367 (500)
T KOG0120|consen 294 VGGLPLYLTEDQVKELLDSFGPLKAFRLVK--DSATG---NSKGFAFCEYCDPSVTDQAIAGLNGMQLG-DKKLVVQRAI 367 (500)
T ss_pred hccCcCccCHHHHHHHHHhcccchhheeec--ccccc---cccceeeeeeeCCcchhhhhcccchhhhc-CceeEeehhh
Confidence 566666666665 265444444443 22223 56899999999999999999999999999 9999998765
Q ss_pred Cccc
Q psy17775 141 QVFL 144 (211)
Q Consensus 141 ~~~i 144 (211)
....
T Consensus 368 ~g~~ 371 (500)
T KOG0120|consen 368 VGAS 371 (500)
T ss_pred ccch
Confidence 4443
No 88
>KOG4660|consensus
Probab=92.91 E-value=0.035 Score=54.22 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=53.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
+|.||+..|+.+.| |. +|.-|..-. +++|..+|+|=|.-+|++|+..|++..++ ||.|.
T Consensus 79 ~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----------~~~~~~~v~FyDvR~A~~Alk~l~~~~~~-~~~~k 143 (549)
T KOG4660|consen 79 VVFNLPRSVSNDTLLRIFGAYGEIREIRETP----------NKRGIVFVEFYDVRDAERALKALNRREIA-GKRIK 143 (549)
T ss_pred EEEecCCcCCHHHHHHHHHhhcchhhhhccc----------ccCceEEEEEeehHhHHHHHHHHHHHHhh-hhhhc
Confidence 48999999988874 66 888877777 88999999999999999999999999999 99998
No 89
>KOG0153|consensus
Probab=92.62 E-value=0.18 Score=47.20 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=44.3
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCC
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~ 141 (211)
.+..|.++. . +++|||+|....+|++|...+-...+-+|++|.|..++.
T Consensus 254 eirsi~~~~----------~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 254 EIRSIRILP----------R-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred CeeeEEeec----------c-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 889999988 4 789999999999999999888887777799999999988
No 90
>KOG0415|consensus
Probab=92.30 E-value=0.17 Score=47.74 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=52.0
Q ss_pred ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCccc
Q psy17775 79 SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFL 144 (211)
Q Consensus 79 LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i 144 (211)
+|+ -|+.|.+++ ++.+| -.--+|||+|++.++++.|.--+.++.+- ...|+|.||-..+-
T Consensus 259 IFSrFG~i~sceVIR--D~ktg---dsLqyaFiEFen~escE~AyFKMdNvLID-DrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 259 IFSRFGKIVSCEVIR--DRKTG---DSLQYAFIEFENKESCEQAYFKMDNVLID-DRRIHVDFSQSVSK 321 (479)
T ss_pred HHhhcccceeeeEEe--ccccc---chhheeeeeecchhhHHHHHhhhcceeec-cceEEeehhhhhhh
Confidence 577 899999999 77777 44578999999999999999999999998 99999999865443
No 91
>KOG0149|consensus
Probab=91.97 E-value=0.26 Score=43.97 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=47.6
Q ss_pred cCCCCCCCccccc------cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPPAFEFERS------YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~~i~~d~L------FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|-||+=....|.| |.+|+-..++- |+-+| ..+|.+||.|.|.++|+||+..- .++-||++-+++.+
T Consensus 17 VggL~w~T~~~~l~~yFeqfGeI~eavvit--d~~t~---rskGyGfVTf~d~~aa~rAc~dp--~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 17 VGGLAWETHKETLRRYFEQFGEIVEAVVIT--DKNTG---RSKGYGFVTFRDAEAATRACKDP--NPIIDGRKANCNLA 88 (247)
T ss_pred EcCcccccchHHHHHHHHHhCceEEEEEEe--ccCCc---cccceeeEEeecHHHHHHHhcCC--CCcccccccccchh
Confidence 6666655555544 34666666665 55566 67899999999999999998754 45666988887765
No 92
>KOG0533|consensus
Probab=91.69 E-value=0.41 Score=42.69 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=57.0
Q ss_pred ccCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+.-+.-+. ||. .+.++-+=..+.| ...|+|-|-|.-...|+.||.-|+|+.|- |+.|+|...
T Consensus 87 ~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G------~s~Gta~v~~~r~~DA~~avk~~~gv~ld-G~~mk~~~i 159 (243)
T KOG0533|consen 87 NVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAG------RSLGTADVSFNRRDDAERAVKKYNGVALD-GRPMKIEII 159 (243)
T ss_pred eeecCCcCcchHHHHHHHHHhccceEEeeccCCCC------CCCccceeeecchHhHHHHHHHhcCcccC-CceeeeEEe
Confidence 5899987544443 688 5566666555555 44699999999999999999999998888 999999877
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
-.+...
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 666665
No 93
>KOG4209|consensus
Probab=90.79 E-value=0.44 Score=41.97 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=47.5
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCc
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQV 142 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~ 142 (211)
.|.+|.++. ++..+ ..+|.|+|.|.+...++.|+. |+|..|. |..++|++-+-.
T Consensus 127 ~i~~~ti~~--d~~~~---~~k~~~yvef~~~~~~~~ay~-l~gs~i~-~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 127 GINRVTVPK--DKFRG---HPKGFAYVEFSSYELVEEAYK-LDGSEIP-GPAIEVTLKRTN 180 (231)
T ss_pred Cccceeeec--cccCC---CcceeEEEecccHhhhHHHhh-cCCcccc-cccceeeeeeee
Confidence 777777777 66666 458999999999999999999 9999999 999999988776
No 94
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=90.74 E-value=0.56 Score=36.18 Aligned_cols=73 Identities=12% Similarity=-0.019 Sum_probs=52.2
Q ss_pred CccCCCCCCCccccccc----------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceec---CC
Q psy17775 65 DDYYGAPPAFEFERSYN----------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLC---NG 131 (211)
Q Consensus 65 ~~v~nl~~~i~~d~LFn----------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf---~G 131 (211)
+|+.|+|.+++.+.|-. |-.-.-+=.+ ++ .-.|+|||-|.++..|.+-.+.++|..+- +.
T Consensus 4 vMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~----~~---~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~ 76 (97)
T PF04059_consen 4 VMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFK----NK---CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSK 76 (97)
T ss_pred EEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeecc----CC---CceEEEEEEcCCHHHHHHHHHHHcCCccccCCCC
Confidence 46889999888887622 2222212111 11 23799999999999999999999998863 25
Q ss_pred ceeEEeecCCccc
Q psy17775 132 KRLAVAYSKQVFL 144 (211)
Q Consensus 132 k~L~V~~SK~~~i 144 (211)
|..+|+|++-+..
T Consensus 77 Kvc~i~yAriQG~ 89 (97)
T PF04059_consen 77 KVCEISYARIQGK 89 (97)
T ss_pred cEEEEehhHhhCH
Confidence 8889999987654
No 95
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.56 E-value=0.6 Score=35.54 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=45.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCcee-cCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCC
Q psy17775 106 CMVQMGDTLSAERAMGNLSKTLL-CNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQP 184 (211)
Q Consensus 106 AlVqm~D~~~A~~Ai~~L~g~~L-f~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~p 184 (211)
|+|-|.|..-|++-++. ..+.+ .++..++|..+....-. .. .|+-| ...
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~----------~~-k~qv~------------------~~v 50 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGH----------LQ-KFQVF------------------SGV 50 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCC----------ce-EEEEE------------------Ecc
Confidence 89999999999998863 33332 22566777654433322 11 11111 223
Q ss_pred CcceEEeecCCCCCCHHHHHhhh
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDIS 207 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf 207 (211)
..+++.++|||..+.||+|++..
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 34688899999999999998764
No 96
>KOG2193|consensus
Probab=88.74 E-value=0.22 Score=47.91 Aligned_cols=69 Identities=28% Similarity=0.291 Sum_probs=55.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCC-ceecCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCC
Q psy17775 102 PEGCCMVQMGDTLSAERAMGNLSK-TLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKN 180 (211)
Q Consensus 102 k~g~AlVqm~D~~~A~~Ai~~L~g-~~Lf~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn 180 (211)
|-|+|||-..|...|-.|++-|+| ..|. |++++|.+|-+....
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elq-Gkr~e~~~sv~kkqr----------------------------------- 79 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQ-GKRQEVEHSVPKKQR----------------------------------- 79 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhc-CceeeccchhhHHHH-----------------------------------
Confidence 469999999999999999999999 4588 999999877543332
Q ss_pred CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|.-+-|.|+|+...-|.|..|..++|
T Consensus 80 -----srk~Qirnippql~wevld~Ll~qyg 105 (584)
T KOG2193|consen 80 -----SRKIQIRNIPPQLQWEVLDSLLAQYG 105 (584)
T ss_pred -----hhhhhHhcCCHHHHHHHHHHHHhccC
Confidence 12367788888888888888887776
No 97
>KOG4307|consensus
Probab=88.56 E-value=1.4 Score=44.92 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=48.5
Q ss_pred cCCCCCCCccccc---cc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEE
Q psy17775 67 YYGAPPAFEFERS---YN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V 136 (211)
|.|.|-+++.|.| |+ +-+++|+=. +| ...|.|||-|++.+.|.+|..-|++.+|+ ..++.|
T Consensus 872 ~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd--~G------~pTGe~mvAfes~~eAr~A~~dl~~~~i~-nr~V~l 941 (944)
T KOG4307|consen 872 CNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND--DG------VPTGECMVAFESQEEARRASMDLDGQKIR-NRVVSL 941 (944)
T ss_pred ecCCCccccHHHHHHHhcccccCCCceeEeecC--CC------CcccceeEeecCHHHHHhhhhccccCccc-ceeEEE
Confidence 7888889999875 77 444444433 34 45699999999999999999999999999 776655
No 98
>KOG1457|consensus
Probab=88.53 E-value=0.45 Score=42.58 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=42.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLC 129 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf 129 (211)
.|-||-+.+++|.| |. -..+.||--| +..--|||.|+|.++|..||.+|+|..|-
T Consensus 214 fianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---------~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 214 FIANLGPNCTEDELKQLLSRYPGFHILKIRAR---------GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhccCCCCCHHHHHHHHHhCCCceEEEEecC---------CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 38899999999985 55 4455555432 22457999999999999999999998876
No 99
>KOG4660|consensus
Probab=88.22 E-value=0.37 Score=47.32 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=26.0
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-|+.+|.++|||..||+++|..+|+.||
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yG 100 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYG 100 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhc
Confidence 3578999999999999999999999987
No 100
>KOG4661|consensus
Probab=88.00 E-value=0.54 Score=46.97 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=55.0
Q ss_pred cCCCCC---CCccccccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPP---AFEFERSYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~---~i~~d~LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||-. ..+.-.||+ .|+--|++- |..--| .+=+.||.|.....|.+||.||+.+.|+ |+-|.|.-+|
T Consensus 410 VSGLSstTRAtDLKnlFSKyGKVvGAKVVT-NaRsPG----aRCYGfVTMSts~eAtkCI~hLHrTELH-GrmISVEkaK 483 (940)
T KOG4661|consen 410 VSGLSSTTRATDLKNLFSKYGKVVGAKVVT-NARSPG----ARCYGFVTMSTSAEATKCIEHLHRTELH-GRMISVEKAK 483 (940)
T ss_pred eeccccchhhhHHHHHHHHhcceeceeeee-cCCCCC----cceeEEEEecchHHHHHHHHHhhhhhhc-ceeeeeeecc
Confidence 667654 555566888 899999887 222111 2457999999999999999999999999 9999999887
Q ss_pred Cc
Q psy17775 141 QV 142 (211)
Q Consensus 141 ~~ 142 (211)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 63
No 101
>KOG0110|consensus
Probab=87.64 E-value=0.33 Score=48.95 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=56.6
Q ss_pred cCCCCC---CCccccccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPP---AFEFERSYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~---~i~~d~LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|+|- +=++..||+ .|..|.+-+|-+. + .-+|-|||.|-.+..|.+|+++|.++-|| |..|.+.+++
T Consensus 618 VRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k--~---a~rGF~Fv~f~t~~ea~nA~~al~STHly-GRrLVLEwA~ 691 (725)
T KOG0110|consen 618 VRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK--G---AHRGFGFVDFLTPREAKNAFDALGSTHLY-GRRLVLEWAK 691 (725)
T ss_pred eeccchHHHHHHHHHHHhcccceeeeccchhhcc--h---hhccceeeeccCcHHHHHHHHhhccccee-chhhheehhc
Confidence 556653 333445777 7888888775222 1 23788999999999999999999999999 9999999999
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
....+
T Consensus 692 ~d~~~ 696 (725)
T KOG0110|consen 692 SDNTM 696 (725)
T ss_pred cchHH
Confidence 86654
No 102
>KOG0125|consensus
Probab=86.12 E-value=0.67 Score=43.30 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=23.9
Q ss_pred ceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 187 QLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 187 ~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|-||+||||=.+-|-||+.||+++|
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG 121 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFG 121 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhC
Confidence 6799999999999999999999987
No 103
>KOG1365|consensus
Probab=84.92 E-value=0.51 Score=45.02 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=73.9
Q ss_pred cCCCCCCCcccc---ccc-------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCce-eE
Q psy17775 67 YYGAPPAFEFER---SYN-------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKR-LA 135 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn-------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~-L~ 135 (211)
+.|||-..+... .|. .++.|=|++++|| ...|.|||+|+..++|+.|++.=.+ +. ||+ |+
T Consensus 166 mRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdg------rpTGdAFvlfa~ee~aq~aL~khrq--~i-GqRYIE 236 (508)
T KOG1365|consen 166 MRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDG------RPTGDAFVLFACEEDAQFALRKHRQ--NI-GQRYIE 236 (508)
T ss_pred ecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCC------CcccceEEEecCHHHHHHHHHHHHH--HH-hHHHHH
Confidence 677775333333 364 8889999999888 7789999999999999999864333 33 544 45
Q ss_pred EeecCCcccccCCCCccCCCCCCcccccccCcccccCCc---------hhccC-CCCCCC---cceEEeecCCCCCCHHH
Q psy17775 136 VAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNP---------KMAMK-NRIQPP---SQLLHFFNAPPDITEEQ 202 (211)
Q Consensus 136 V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~---------~~~~k-n~i~pP---s~~Lh~~NlP~~~tee~ 202 (211)
+--|.-.++.. -+||+... ....- .+.+|| ...|-+-.||-+.|-|+
T Consensus 237 lFRSTaaEvqq--------------------vlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEd 296 (508)
T KOG1365|consen 237 LFRSTAAEVQQ--------------------VLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVED 296 (508)
T ss_pred HHHHhHHHHHH--------------------HHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHH
Confidence 54444333321 11222211 01111 134444 34899999999999999
Q ss_pred HHhhhccC
Q psy17775 203 LTDISGRT 210 (211)
Q Consensus 203 L~~lf~~~ 210 (211)
|.+.|.++
T Consensus 297 IL~FlgdF 304 (508)
T KOG1365|consen 297 ILDFLGDF 304 (508)
T ss_pred HHHHHHHH
Confidence 99888753
No 104
>KOG0533|consensus
Probab=83.42 E-value=0.81 Score=40.81 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=23.0
Q ss_pred ceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 187 QLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 187 ~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..|.|+|||..++++||.+||.++|
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~ 108 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFG 108 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhc
Confidence 4699999999999999999999874
No 105
>KOG0122|consensus
Probab=83.29 E-value=0.94 Score=40.78 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.3
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
--+.+|-|.||+.+++|++|.+||..+|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg 214 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFG 214 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccC
Confidence 3567899999999999999999998876
No 106
>KOG0130|consensus
Probab=80.22 E-value=1.4 Score=36.84 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=23.8
Q ss_pred ceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 187 QLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 187 ~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-+|++.++-++.|||+|.+.|.++|
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyG 97 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYG 97 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcc
Confidence 5899999999999999999999987
No 107
>KOG0120|consensus
Probab=79.51 E-value=2.8 Score=41.02 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=39.3
Q ss_pred cceEeeEecC-CCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 82 SPVLDKFIGK-PRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 82 nV~rvK~l~~-~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|..|+|=+- ++....| .-|..||+|.|.+.|++|+..|.|.++- |..+..+|
T Consensus 435 ~v~~v~ipr~~~~~~~~~---G~GkVFVefas~ed~qrA~~~L~GrKF~-nRtVvtsY 488 (500)
T KOG0120|consen 435 AVRSVEIPRPYPDENPVP---GTGKVFVEFADTEDSQRAMEELTGRKFA-NRTVVASY 488 (500)
T ss_pred ceeEEecCCCCCCCCcCC---CcccEEEEecChHHHHHHHHHccCceeC-CcEEEEEe
Confidence 6666666552 2233332 2488999999999999999999999977 77776665
No 108
>KOG3152|consensus
Probab=78.81 E-value=1.7 Score=39.40 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=24.5
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+=|+||+|||+.+.-..|++|+++||
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yG 99 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYG 99 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhcc
Confidence 46999999999999999999999998
No 109
>KOG4676|consensus
Probab=77.00 E-value=3.1 Score=39.92 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=73.3
Q ss_pred cCCCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-||.+.++.|+ ||+ .|.-++++--.+-.+-|-. .-+|+|.|.|...+..|. ||-++.+- |..|-|-..-
T Consensus 12 vanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~--sRtcyVkf~d~~sv~vaQ-hLtntvfv-draliv~p~~ 87 (479)
T KOG4676|consen 12 VANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVI--SRTCYVKFLDSQSVTVAQ-HLTNTVFV-DRALIVRPYG 87 (479)
T ss_pred ecccCchhhHHHHHHHHhhccccccccccCCCCCccCcce--eeeEEEeccCCcceeHHh-hhccceee-eeeEEEEecC
Confidence 667777666665 466 3333444432222222222 368999999999998886 78888888 7776654322
Q ss_pred Cccccc----------CCCCccCCCCCCcccccccC-----cccccCCchh----ccCCCCCCCcceEEeecCCCCCCHH
Q psy17775 141 QVFLSD----------VSHPYELPDGSESFKDFTGS-----RKNRFMNPKM----AMKNRIQPPSQLLHFFNAPPDITEE 201 (211)
Q Consensus 141 ~~~i~~----------~~~~~~l~dgs~~~kdfs~s-----~~nRf~~~~~----~~kn~i~pPs~~Lh~~NlP~~~tee 201 (211)
..-|.+ ...|..|+-++-++-|--.. ++.=..+|.. +++ .|-.=..++.+.+|+.++-+.
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~-kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAK-KLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhh-hhHHHHhhhhhhcchhhhcch
Confidence 211110 01122232222222221111 1111111111 111 011112578899999999999
Q ss_pred HHHhhhccCC
Q psy17775 202 QLTDISGRTD 211 (211)
Q Consensus 202 ~L~~lf~~~G 211 (211)
++.++|..+|
T Consensus 167 e~~e~f~r~G 176 (479)
T KOG4676|consen 167 ESGESFERKG 176 (479)
T ss_pred hhhhhhhhcc
Confidence 9999998776
No 110
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.90 E-value=5.6 Score=28.46 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=27.5
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
+|-+|.++. .+++|+.... .|+.+++.|++..+. |++++|..
T Consensus 32 ~IG~I~I~~-------------~~S~vev~~~-~a~~v~~~l~~~~~~-gk~v~ve~ 73 (74)
T PF03880_consen 32 DIGRIDIFD-------------NFSFVEVPEE-VAEKVLEALNGKKIK-GKKVRVER 73 (74)
T ss_dssp GEEEEEE-S-------------S-EEEEE-TT--HHHHHHHHTT--SS-S----EEE
T ss_pred hEEEEEEee-------------eEEEEEECHH-HHHHHHHHhcCCCCC-CeeEEEEE
Confidence 778888877 6899988655 789999999999999 99999874
No 111
>KOG1548|consensus
Probab=76.74 E-value=6.7 Score=37.01 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=40.8
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
-|.+|.+.-+ ...|-|.|.|.+...|+.||+.|+|-.+- |++|.-...
T Consensus 302 ~v~~vvv~d~---------hPdGvvtV~f~n~eeA~~ciq~m~GR~fd-gRql~A~i~ 349 (382)
T KOG1548|consen 302 QVRKVVVYDR---------HPDGVVTVSFRNNEEADQCIQTMDGRWFD-GRQLTASIW 349 (382)
T ss_pred CcceEEEecc---------CCCceeEEEeCChHHHHHHHHHhcCeeec-ceEEEEEEe
Confidence 6777887742 56899999999999999999999998877 999987654
No 112
>KOG0121|consensus
Probab=76.72 E-value=1.8 Score=35.86 Aligned_cols=26 Identities=23% Similarity=0.098 Sum_probs=24.3
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|.+|++.||.--+|||+|-+||+..|
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG 61 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCG 61 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhcc
Confidence 67999999999999999999999876
No 113
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=76.50 E-value=4.9 Score=34.27 Aligned_cols=51 Identities=27% Similarity=0.199 Sum_probs=38.6
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhC--CceecCCceeEEeecCCccc
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLS--KTLLCNGKRLAVAYSKQVFL 144 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~--g~~Lf~Gk~L~V~~SK~~~i 144 (211)
+++..-.|+ + =+-.+|.|.+...|.+|...|+ +..+. |+.|+|.|+....+
T Consensus 21 ~~~~~~~L~----------s-FrRi~v~f~~~~~A~~~r~~l~~~~~~~~-g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 21 PPVQFSPLK----------S-FRRIRVVFESPESAQRARQLLHWDGTSFN-GKRLRVYFGQPTPI 73 (184)
T ss_dssp SS-EEEEET----------T-TTEEEEE-SSTTHHHHHHHTST--TSEET-TEE-EEE----SS-
T ss_pred CceEEEEcC----------C-CCEEEEEeCCHHHHHHHHHHhcccccccC-CCceEEEEcccccc
Confidence 677788888 3 5889999999999999999999 99999 99999999966555
No 114
>KOG0106|consensus
Probab=74.90 E-value=1.8 Score=37.99 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=32.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCceecCCceeEE
Q psy17775 103 EGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136 (211)
Q Consensus 103 ~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V 136 (211)
.+.|+|+|.....|.+|++.|+|..|+ |+.|.+
T Consensus 133 ~~~~~v~Fs~~~da~ra~~~l~~~~~~-~~~l~~ 165 (216)
T KOG0106|consen 133 RNFAFVEFSEQEDAKRALEKLDGKKLN-GRRISV 165 (216)
T ss_pred ccccceeehhhhhhhhcchhccchhhc-Cceeee
Confidence 689999999999999999999999999 999999
No 115
>KOG0128|consensus
Probab=74.09 E-value=1.5 Score=45.20 Aligned_cols=53 Identities=17% Similarity=0.051 Sum_probs=38.6
Q ss_pred cCCCCCCCccccc---cc-----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17775 67 YYGAPPAFEFERS---YN-----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKT 126 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn-----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~ 126 (211)
+.||+.+|....| |. .|++|- .+|+.+ .-+|.|-|.|-++..|..||....++
T Consensus 672 vsnl~~~~~~~dl~~~~~~~~~~e~vqi~-~h~n~~------~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 672 VSNLSPKMSEEDLSERFSPSGTIEVVQIV-IHKNEK------RFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HhhcchhhcCchhhhhcCccchhhhHHHH-HHhhcc------ccccceeeEeecCCchhhhhhhhhhh
Confidence 7888887776664 33 444444 344455 66899999999999999999866654
No 116
>KOG1855|consensus
Probab=74.06 E-value=1.1 Score=43.14 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=45.0
Q ss_pred cCCCCC---CCccccccc---cceEeeEecC---CCCCCCCCC-----CCCCeEEEEeCCHHHHHHHHHHhCCceec
Q psy17775 67 YYGAPP---AFEFERSYN---SPVLDKFIGK---PRGMSGPPS-----GPEGCCMVQMGDTLSAERAMGNLSKTLLC 129 (211)
Q Consensus 67 v~nl~~---~i~~d~LFn---nV~rvK~l~~---~~~~~~~~~-----~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf 129 (211)
++|||+ .=+..+||. +|-.|.|++- +.-.+|-++ .-+-||+|+|...++|..|.+.|+-..-+
T Consensus 236 aenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~w 312 (484)
T KOG1855|consen 236 AENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNW 312 (484)
T ss_pred EecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhh
Confidence 788886 334446798 9999999983 222233222 02689999999999999999999765544
No 117
>KOG0124|consensus
Probab=73.37 E-value=4.9 Score=38.44 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=53.2
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|...++....+.| |. .|++|++-+-+-+ + .-+|+.||+|.+..+.+.||..+|-+-|- |+-|+|--+-
T Consensus 215 VaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~--~---~HkGyGfiEy~n~qs~~eAiasMNlFDLG-GQyLRVGk~v 288 (544)
T KOG0124|consen 215 VASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG--R---GHKGYGFIEYNNLQSQSEAIASMNLFDLG-GQYLRVGKCV 288 (544)
T ss_pred eeecCCCccHHHHHHHHHhhcceeeEEeeccCCC--C---CccceeeEEeccccchHHHhhhcchhhcc-cceEeccccc
Confidence 4445666666653 44 9999999883222 1 34799999999999999999999999999 9999997554
Q ss_pred C
Q psy17775 141 Q 141 (211)
Q Consensus 141 ~ 141 (211)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 4
No 118
>KOG0126|consensus
Probab=70.92 E-value=0.99 Score=39.25 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=24.7
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|+-+||-|||-+.||.||..+|++||
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyG 60 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYG 60 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccC
Confidence 47899999999999999999999998
No 119
>KOG2202|consensus
Probab=64.92 E-value=5 Score=36.24 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=36.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcc
Q psy17775 102 PEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVF 143 (211)
Q Consensus 102 k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~ 143 (211)
-.|.+-|+|...+.|++|+..|||-.+- |++|...++--..
T Consensus 109 l~GNVYV~f~~Ee~ae~a~~~lnnRw~~-G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 109 LVGNVYVKFRSEEDAEAALEDLNNRWYN-GRPIHAELSPVTD 149 (260)
T ss_pred hhhhhhhhcccHHHHHHHHHHHcCcccc-CCcceeeecCcCc
Confidence 4688999999999999999999999887 9999988875543
No 120
>KOG0116|consensus
Probab=64.37 E-value=6.6 Score=37.68 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=53.7
Q ss_pred cCCCCCCCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-|||..++.+.|.+ +|.+.-|..|..+.. + +..|||.|.+..++++||..= -..|- |.+|.|.=-+
T Consensus 293 V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~----~-~~fgFV~f~~~~~~~~~i~As-p~~ig-~~kl~Veek~ 365 (419)
T KOG0116|consen 293 VKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGK----N-PCFGFVEFENAAAVQNAIEAS-PLEIG-GRKLNVEEKR 365 (419)
T ss_pred eecCCCCCCHHHHHHHHhhcccccccceEEeccCCC----c-CceEEEEEeecchhhhhhhcC-ccccC-CeeEEEEecc
Confidence 788998888887633 999999988653322 2 388999999999999999744 66666 8999997555
Q ss_pred Cccc
Q psy17775 141 QVFL 144 (211)
Q Consensus 141 ~~~i 144 (211)
....
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 4443
No 121
>KOG0113|consensus
Probab=64.19 E-value=5.4 Score=36.97 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=27.6
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|-=|=+||||+-|+-+.+|.+|...|+.||
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG 126 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYG 126 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcC
Confidence 455789999999999999999999999987
No 122
>KOG0415|consensus
Probab=63.58 E-value=4.7 Score=38.35 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=29.4
Q ss_pred CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+.||-+|||+--|-|-.|.|+|.-||+.+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG 264 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFG 264 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcc
Confidence 4789999999999999999999999999987
No 123
>KOG0116|consensus
Probab=61.07 E-value=6.8 Score=37.59 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.7
Q ss_pred eEEeecCCCCCCHHHHHhhhccCC
Q psy17775 188 LLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 188 ~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.||+-|||.++|+++|.+.|.++|
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG 313 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFG 313 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcc
Confidence 399999999999999999999987
No 124
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=57.19 E-value=27 Score=27.39 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=32.2
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceec
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLC 129 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf 129 (211)
.|..++|++ +++ | .+=.+||+|.|...|+.-...+||.++=
T Consensus 40 ~i~~~riir--d~~---p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 40 DIEHIRIIR--DGT---P--NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred cEEEEEEee--CCC---C--ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 888999999 221 1 1236889999999999999999997753
No 125
>KOG0804|consensus
Probab=56.76 E-value=20 Score=34.99 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=52.9
Q ss_pred cCCCCCCCccccc------cc-cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCce-----------e
Q psy17775 67 YYGAPPAFEFERS------YN-SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTL-----------L 128 (211)
Q Consensus 67 v~nl~~~i~~d~L------Fn-nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~-----------L 128 (211)
++..|..|++..| |+ .|.-|+|+| +||-. +=.+||.|.|...|..--.++||-. |
T Consensus 79 ilaVP~~mt~~Dll~F~~~~~~~I~~irivR--d~~pn-----rymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll 151 (493)
T KOG0804|consen 79 ILAVPAYMTSHDLLRFCASFIKQISDIRIVR--DGMPN-----RYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLL 151 (493)
T ss_pred EEeccccccHHHHHHHHHHHhhhhheeEEee--cCCCc-----eEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEE
Confidence 6777888988886 34 899999999 66544 4679999999999999999999954 4
Q ss_pred cCCceeEEeecCCcc
Q psy17775 129 CNGKRLAVAYSKQVF 143 (211)
Q Consensus 129 f~Gk~L~V~~SK~~~ 143 (211)
| =.++++..|...+
T Consensus 152 ~-V~~ve~~~s~d~a 165 (493)
T KOG0804|consen 152 Y-VDRVEVTESEDGA 165 (493)
T ss_pred E-EEEEEEEecccCC
Confidence 4 4556666555443
No 126
>KOG4211|consensus
Probab=55.02 E-value=13 Score=36.37 Aligned_cols=73 Identities=25% Similarity=0.266 Sum_probs=46.9
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
.+.+||-.++.+.| |. +|+..-|+. +..--+ .+-|-|+|||+..++|+.|+..-.- .+- -.=|+|--|.
T Consensus 107 RLRGLPfscte~dI~~FFaGL~Iv~~gi~l-~~d~rg---R~tGEAfVqF~sqe~ae~Al~rhre-~iG-hRYIEvF~Ss 180 (510)
T KOG4211|consen 107 RLRGLPFSCTEEDIVEFFAGLEIVPDGILL-PMDQRG---RPTGEAFVQFESQESAEIALGRHRE-NIG-HRYIEVFRSS 180 (510)
T ss_pred EecCCCccCcHHHHHHHhcCCcccccceee-eccCCC---CcccceEEEecCHHHHHHHHHHHHH-hhc-cceEEeehhH
Confidence 47899988888876 66 777765533 011112 2359999999999999999874332 222 2336666665
Q ss_pred Cccc
Q psy17775 141 QVFL 144 (211)
Q Consensus 141 ~~~i 144 (211)
+..+
T Consensus 181 ~~e~ 184 (510)
T KOG4211|consen 181 RAEV 184 (510)
T ss_pred HHHH
Confidence 5444
No 127
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=54.90 E-value=36 Score=32.39 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=51.2
Q ss_pred cCCCCCCCcccc---------ccc---cceEeeEecCCCCCCCCCCCCCCeE--EEEeCCHHHHHHHHHHhCCceecCCc
Q psy17775 67 YYGAPPAFEFER---------SYN---SPVLDKFIGKPRGMSGPPSGPEGCC--MVQMGDTLSAERAMGNLSKTLLCNGK 132 (211)
Q Consensus 67 v~nl~~~i~~d~---------LFn---nV~rvK~l~~~~~~~~~~~~k~g~A--lVqm~D~~~A~~Ai~~L~g~~Lf~Gk 132 (211)
|-||++++--+. .|. .|.+|-+=+| .+.--|. -++| .|.|+..+.|.+||....|..+- |+
T Consensus 119 Vigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkk---t~s~nst-~~h~gvYITy~~kedAarcIa~vDgs~~D-Gr 193 (480)
T COG5175 119 VIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKK---TSSLNST-ASHAGVYITYSTKEDAARCIAEVDGSLLD-GR 193 (480)
T ss_pred EecCCCCCCcccccccccchhhhhhccceeEEEeccc---ccccccc-cccceEEEEecchHHHHHHHHHhcccccc-Cc
Confidence 667777654443 355 7777766663 2221222 3456 99999999999999999999998 99
Q ss_pred eeEEeecCCc
Q psy17775 133 RLAVAYSKQV 142 (211)
Q Consensus 133 ~L~V~~SK~~ 142 (211)
.|+.+|-...
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999997654
No 128
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=53.64 E-value=15 Score=28.39 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=29.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE-EeecC
Q psy17775 102 PEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA-VAYSK 140 (211)
Q Consensus 102 k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~-V~~SK 140 (211)
...-.-|+|++..+|.+|++ -||..|- |.-|- |.+++
T Consensus 53 ~~NWi~I~Y~~~~~A~rAL~-~NG~i~~-g~~mvGV~~~~ 90 (100)
T PF05172_consen 53 GGNWIHITYDNPLSAQRALQ-KNGTIFS-GSLMVGVKPCD 90 (100)
T ss_dssp CTTEEEEEESSHHHHHHHHT-TTTEEET-TCEEEEEEE-H
T ss_pred CCCEEEEECCCHHHHHHHHH-hCCeEEc-CcEEEEEEEcH
Confidence 35778899999999999996 7888887 77654 66664
No 129
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=53.04 E-value=21 Score=25.63 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=27.4
Q ss_pred eEEEEeCCHHHHHHHHHHhCCceecCCceeEE
Q psy17775 105 CCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136 (211)
Q Consensus 105 ~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V 136 (211)
-=.|.|.|...|+++....+|..+| +-.|.+
T Consensus 35 GfYIvF~~~~Ea~rC~~~~~~~~~f-~y~m~M 65 (66)
T PF11767_consen 35 GFYIVFNDSKEAERCFRAEDGTLFF-TYRMQM 65 (66)
T ss_pred EEEEEECChHHHHHHHHhcCCCEEE-EEEEEe
Confidence 3478899999999999999999999 887765
No 130
>KOG2416|consensus
Probab=49.51 E-value=14 Score=37.36 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=26.2
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+||++|||.||---+|+-+|++|++..|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtg 469 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTG 469 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhcc
Confidence 45799999999999999999999998765
No 131
>KOG0151|consensus
Probab=48.48 E-value=14 Score=37.91 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.7
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|=+..||+.|+++.++|+.|...|+.+|
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfg 199 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFG 199 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccC
Confidence 4467899999999999999999999887
No 132
>KOG2314|consensus
Probab=47.24 E-value=17 Score=36.55 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=29.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 102 PEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 102 k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
-+|.+|+++++..+|+.|+..|+|..|--..++.|.
T Consensus 104 tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 104 TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred eeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 379999999999999999999999998723444443
No 133
>KOG0132|consensus
Probab=46.95 E-value=20 Score=37.25 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=25.0
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|.||+|-.||..++|.||.++|+++|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefG 446 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFG 446 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcc
Confidence 68999999999999999999999987
No 134
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=45.89 E-value=23 Score=27.31 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCCCCCcccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCc
Q psy17775 69 GAPPAFEFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKT 126 (211)
Q Consensus 69 nl~~~i~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~ 126 (211)
|+++.++-+. +|. .|.-|.+.+ . ...|+|.|.+...|+.|+..+.-.
T Consensus 8 g~~~~~~re~iK~~f~~~g~V~yVD~~~----------G-~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 8 GLGEPTSREDIKEAFSQFGEVAYVDFSR----------G-DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp E--SS--HHHHHHHT-SS--EEEEE--T----------T--SEEEEEESS---HHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHhcCCcceEEecC----------C-CCEEEEEECCcchHHHHHHHHHhc
Confidence 3444444443 355 777777777 3 578999999999999999988765
No 135
>KOG0129|consensus
Probab=44.57 E-value=1.3e+02 Score=29.80 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=68.4
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCC---eEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEG---CCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g---~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
.|.|||..|+.+.| |- --+.|--=+|.+....-|. +| ++++-|+|..++..-|..- ... +.++=++
T Consensus 263 FvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~pp--kGs~~YvflvFe~E~sV~~Ll~aC---~~~-~~~~yf~ 336 (520)
T KOG0129|consen 263 FVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPP--KGSYGYVFLVFEDERSVQSLLSAC---SEG-EGNYYFK 336 (520)
T ss_pred eecCCCccccHHHHHhhcccccceEeecCCCccccccCCC--CCcccEEEEEecchHHHHHHHHHH---hhc-ccceEEE
Confidence 48999999999875 33 0111111113333333332 56 9999999998887633321 112 3333333
Q ss_pred ec----CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhcc
Q psy17775 138 YS----KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGR 209 (211)
Q Consensus 138 ~S----K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~ 209 (211)
.| |-..+. .-|-.|.|.. |... .+...-|.+|+||-.||--+|.++|..||++
T Consensus 337 vss~~~k~k~VQ--IrPW~laDs~--fv~d---------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~ 393 (520)
T KOG0129|consen 337 VSSPTIKDKEVQ--IRPWVLADSD--FVLD---------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMED 393 (520)
T ss_pred EecCccccccee--EEeeEeccch--hhhc---------------cCcccCccceEEecCCCCcchHHHHHHHHHH
Confidence 32 222222 1233455543 2221 2345567899999999999999999999983
No 136
>KOG0153|consensus
Probab=44.35 E-value=16 Score=34.51 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=24.8
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++|+|-++-++++|-+|++.|.+||
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyG 253 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYG 253 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcC
Confidence 68999999999999999999999998
No 137
>KOG1365|consensus
Probab=43.85 E-value=65 Score=31.19 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=61.2
Q ss_pred cCCCCC---CCccccccc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCC
Q psy17775 67 YYGAPP---AFEFERSYN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141 (211)
Q Consensus 67 v~nl~~---~i~~d~LFn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~ 141 (211)
..+|+. +.+.+++|. ||.+--+.-- .-.-| ..-|+|+|+|.|.++-+.|+.-= .+.+. +..++|--+..
T Consensus 65 aRglpwq~Sd~~ia~ff~gl~ia~gg~aKO-G~~qg---rRnge~lvrf~d~e~RdlalkRh-khh~g-~ryievYka~g 138 (508)
T KOG1365|consen 65 ARGLPWQSSDQDIARFFKGLNIANGGRALC-LNAQG---RRNGEALVRFVDPEGRDLALKRH-KHHMG-TRYIEVYKATG 138 (508)
T ss_pred ecCCCCCcccCCHHHHHhhhhccccceeee-ehhhh---ccccceEEEecCchhhhhhhHhh-hhhcc-CCceeeeccCc
Confidence 455654 677777777 3332211000 00001 34699999999999999997532 22233 45566532211
Q ss_pred cccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhcc
Q psy17775 142 VFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGR 209 (211)
Q Consensus 142 ~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~ 209 (211)
.+-. . +--++.-.-.+|.+.+ + -.++-+-.||-++|+.|+.+.|..
T Consensus 139 e~f~------~-------iagg~s~e~~~flsk~----~-----qvivRmRGLPfdat~~dVv~FF~~ 184 (508)
T KOG1365|consen 139 EEFL------K-------IAGGTSNEAAPFLSKE----N-----QVIVRMRGLPFDATALDVVEFFGP 184 (508)
T ss_pred hhhe------E-------ecCCccccCCCCCCcc----c-----ceEEEecCCCCCcchHHHHHhcCC
Confidence 1110 0 0011111111222211 1 147889999999999999999963
No 138
>KOG0226|consensus
Probab=43.79 E-value=17 Score=33.13 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEE
Q psy17775 101 GPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136 (211)
Q Consensus 101 ~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V 136 (211)
..+|+.||-|.|+..+-+|++.++|--+- ..+|.+
T Consensus 230 KSkgygfVSf~~pad~~rAmrem~gkyVg-srpikl 264 (290)
T KOG0226|consen 230 KSKGYGFVSFRDPADYVRAMREMNGKYVG-SRPIKL 264 (290)
T ss_pred ccccceeeeecCHHHHHHHHHhhcccccc-cchhHh
Confidence 56899999999999999999999998887 555544
No 139
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=43.43 E-value=31 Score=29.06 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=30.2
Q ss_pred ccccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCC
Q psy17775 79 SYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSK 125 (211)
Q Consensus 79 LFnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g 125 (211)
.|.-|+.|-... +-+|.|.|.|..+|-.|+..++.
T Consensus 113 ~fGpI~SVT~cG------------rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 113 VFGPIQSVTLCG------------RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred hcCCcceeeecC------------CceEEEEehhhHHHHHHHHhhcC
Confidence 377888887766 68999999999999999998876
No 140
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=35.29 E-value=41 Score=25.70 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=18.3
Q ss_pred ceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 187 QLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 187 ~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++|+. .|.+.--.||.+||+.+|
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG 33 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFG 33 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCC
T ss_pred eEEEEe-CchHhhhhhHHHHhccCC
Confidence 688888 999999999999999987
No 141
>KOG1855|consensus
Probab=34.16 E-value=31 Score=33.56 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=25.2
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|+++|...|||.+-.-|.|.+||+..|
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G 256 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVG 256 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhccc
Confidence 789999999999999999999999766
No 142
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=33.81 E-value=46 Score=23.73 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.4
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNL 123 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L 123 (211)
...+|.-+- -..|-|.|.|...|.+|+.+|
T Consensus 33 ~~~~IEWId------------DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 33 GPFRIEWID------------DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred CCceEEEec------------CCcEEEEECCHHHHHHHHHcC
Confidence 566777777 478999999999999999876
No 143
>KOG1996|consensus
Probab=33.77 E-value=46 Score=31.16 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=38.5
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.+|-|..-+ +-|-...=-.||||...++|..|+-.|||-.+- |+..+-+|
T Consensus 312 ~V~~viifeip----~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG-Gr~v~A~F 363 (378)
T KOG1996|consen 312 KVGNVIIFEIP----SQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG-GRVVSACF 363 (378)
T ss_pred ceeeEEEEecC----CCccchhheeeeeeccHHHHHHHHHhcCCceec-ceeeehee
Confidence 78888887711 111111223689999999999999999999888 99888776
No 144
>KOG4574|consensus
Probab=31.48 E-value=1.5e+02 Score=31.49 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=46.7
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecC-CceeEEeecCCcccc
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCN-GKRLAVAYSKQVFLS 145 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~-Gk~L~V~~SK~~~i~ 145 (211)
+|.....|+ . -..|+|.|...+.|-.|.+.|+|..++- |-+-+|.++|.-.--
T Consensus 324 ~v~s~wtlr----------~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ 377 (1007)
T KOG4574|consen 324 SVASAWTLR----------D-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMY 377 (1007)
T ss_pred chhhheecc----------c-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccc
Confidence 999999999 4 6899999999999999999999988763 788999999986554
No 145
>KOG0129|consensus
Probab=27.90 E-value=43 Score=33.11 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.6
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
|.-+++-.||++|+|+.|...|.++|
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FG 284 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFG 284 (520)
T ss_pred ccceeecCCCccccHHHHHhhccccc
Confidence 45689999999999999999999887
No 146
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=27.11 E-value=90 Score=20.98 Aligned_cols=30 Identities=13% Similarity=0.074 Sum_probs=23.5
Q ss_pred cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHH
Q psy17775 80 YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAM 120 (211)
Q Consensus 80 FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai 120 (211)
|..|+++.+=. ....+.|+|.+..+|++|+
T Consensus 24 fGeI~~~~~~~-----------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 24 FGEIVDIYVPE-----------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cCCEEEEEcCC-----------CCcEEEEEECCHHHHHhhC
Confidence 33777766653 3689999999999999995
No 147
>KOG4849|consensus
Probab=27.08 E-value=54 Score=31.40 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=44.6
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCcee-EEeecCC
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRL-AVAYSKQ 141 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L-~V~~SK~ 141 (211)
++.-+||+. ++.-| ..+|.|||......++..-|+.|-.-.|+ |+.- .+.|-|+
T Consensus 108 ~~~dmKFFE--NR~NG---QSKG~AL~~~~SdAa~Kq~MeiLP~k~iH-GQ~P~V~~~NK~ 162 (498)
T KOG4849|consen 108 QFADMKFFE--NRTNG---QSKGYALLVLNSDAAVKQTMEILPTKTIH-GQSPTVLSYNKT 162 (498)
T ss_pred HHhhhhhhh--cccCC---cccceEEEEecchHHHHHHHHhcccceec-CCCCeeeccchh
Confidence 788899988 55555 56899999999999999999999999999 8664 4555555
No 148
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=26.32 E-value=81 Score=23.67 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=27.4
Q ss_pred ccccc-cceEeeEecCCCCCCCCCCCCC--CeEEEEeCCHHHHHHHHHH
Q psy17775 77 ERSYN-SPVLDKFIGKPRGMSGPPSGPE--GCCMVQMGDTLSAERAMGN 122 (211)
Q Consensus 77 d~LFn-nV~rvK~l~~~~~~~~~~~~k~--g~AlVqm~D~~~A~~Ai~~ 122 (211)
+.||+ .|.+|..+. .++ --|+|.+.++..|...-..
T Consensus 42 E~lf~VkV~~VnT~~----------~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 42 EELFDVKVEKVNTLI----------TPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred HHHhCCceEEEEeEE----------cCCCcEEEEEEeCCCCcHHHHHHh
Confidence 34799 999999998 333 3699999999888765443
No 149
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=26.02 E-value=1.1e+02 Score=23.55 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCCCe----EEEEeCCHHHHHHHHHHhCCce
Q psy17775 91 KPRGMSGPPSGPEGC----CMVQMGDTLSAERAMGNLSKTL 127 (211)
Q Consensus 91 ~~~~~~~~~~~k~g~----AlVqm~D~~~A~~Ai~~L~g~~ 127 (211)
.+++.+-|||..+|. |.|+|.+.+.+..|-+.|--+.
T Consensus 35 ~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lrelr 75 (91)
T PF12829_consen 35 FPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLRELR 75 (91)
T ss_pred CCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHHHH
Confidence 345556677766664 9999999999999988875543
No 150
>KOG4210|consensus
Probab=23.17 E-value=42 Score=30.38 Aligned_cols=72 Identities=13% Similarity=0.051 Sum_probs=54.4
Q ss_pred cCCCCCCCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|-+++..++.|.|+. .|++|++.- +.-++ .-+|.|.|.+.+...+.+|+.. +...++ |-++.|.+.+
T Consensus 190 ~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~--~~~s~---~~kg~a~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 262 (285)
T KOG4210|consen 190 VGELDFSLTRDDLKEHFVSSGEITSVRLPT--DEESG---DSKGFAYVDFSAGNSKKLALND-QTRSIG-GRPLRLEEDE 262 (285)
T ss_pred ecccccccchHHHhhhccCcCcceeeccCC--CCCcc---chhhhhhhhhhhchhHHHHhhc-ccCccc-CcccccccCC
Confidence 678888888888643 566665544 22223 4478899999999999999998 899999 9999998777
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
.....
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 65443
Done!