Query psy17775
Match_columns 211
No_of_seqs 149 out of 282
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:40:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tyt_A Heterogeneous nuclear r 99.9 2.2E-26 7.4E-31 192.6 11.7 134 66-211 8-148 (205)
2 1qm9_A Polypyrimidine tract-bi 99.8 1.1E-19 3.7E-24 147.0 10.9 132 66-211 7-145 (198)
3 2adc_A Polypyrimidine tract-bi 99.8 3.6E-19 1.2E-23 148.9 13.4 132 66-211 38-176 (229)
4 1b7f_A Protein (SXL-lethal pro 99.6 1.2E-14 4E-19 113.2 9.2 102 66-211 7-114 (168)
5 1fxl_A Paraneoplastic encephal 99.6 1.6E-14 5.4E-19 111.9 9.4 102 66-211 6-113 (167)
6 3md3_A Nuclear and cytoplasmic 99.5 1.5E-14 5E-19 111.9 9.0 102 67-211 5-112 (166)
7 3pgw_A U1-A; protein-RNA compl 99.5 2.1E-14 7E-19 122.1 10.5 70 66-144 13-92 (282)
8 1l3k_A Heterogeneous nuclear r 99.5 5.7E-14 1.9E-18 112.2 9.3 107 66-211 17-129 (196)
9 2qfj_A FBP-interacting repress 99.5 4.4E-14 1.5E-18 114.4 7.3 113 66-211 32-150 (216)
10 4f02_A Polyadenylate-binding p 99.5 1.2E-13 4.1E-18 114.1 8.0 104 66-211 19-128 (213)
11 2yh0_A Splicing factor U2AF 65 99.4 1.3E-12 4.6E-17 104.3 11.2 115 66-211 8-139 (198)
12 2g4b_A Splicing factor U2AF 65 99.4 1.4E-12 4.7E-17 102.0 9.6 94 67-211 9-119 (172)
13 3sde_A Paraspeckle component 1 99.4 1.4E-12 4.6E-17 111.1 10.0 90 66-211 26-121 (261)
14 3nmr_A Cugbp ELAV-like family 99.4 1.3E-12 4.4E-17 102.0 7.9 105 67-211 8-120 (175)
15 2cjk_A Nuclear polyadenylated 99.4 7.4E-13 2.5E-17 103.1 6.4 99 67-211 8-112 (167)
16 1fje_B Nucleolin RBD12, protei 99.4 2E-12 6.9E-17 101.8 8.7 102 66-211 17-124 (175)
17 3smz_A Protein raver-1, ribonu 99.4 2.9E-12 9.8E-17 108.9 10.3 105 66-211 99-210 (284)
18 4f25_A Polyadenylate-binding p 99.4 5.4E-13 1.8E-17 101.2 5.1 99 66-202 9-113 (115)
19 2ghp_A U4/U6 snRNA-associated 99.3 2.8E-12 9.7E-17 109.3 9.2 107 67-211 122-236 (292)
20 3zzy_A Polypyrimidine tract-bi 99.3 5.3E-12 1.8E-16 100.3 7.6 84 67-168 33-125 (130)
21 3smz_A Protein raver-1, ribonu 99.3 2E-11 6.9E-16 103.6 10.5 90 66-211 26-120 (284)
22 2e5i_A Heterogeneous nuclear r 99.2 1.7E-11 5.8E-16 96.2 8.3 84 67-169 30-122 (124)
23 2ghp_A U4/U6 snRNA-associated 99.2 1.9E-11 6.5E-16 104.2 7.8 92 66-211 45-142 (292)
24 4fxv_A ELAV-like protein 1; RN 99.2 2.4E-11 8.3E-16 90.3 5.6 70 66-141 23-98 (99)
25 1sjr_A Polypyrimidine tract-bi 99.2 5.3E-11 1.8E-15 98.0 8.1 87 67-170 51-145 (164)
26 3r27_A HnRNP L, heterogeneous 99.2 3.4E-11 1.2E-15 91.6 5.7 66 67-144 26-99 (100)
27 3s8s_A Histone-lysine N-methyl 99.1 1.7E-10 5.9E-15 87.5 6.7 72 66-143 10-87 (110)
28 2e5h_A Zinc finger CCHC-type a 99.1 2.8E-10 9.6E-15 81.9 7.4 69 66-140 20-94 (94)
29 3mdf_A Peptidyl-prolyl CIS-tra 99.0 2.3E-10 7.8E-15 80.8 5.2 69 66-140 11-85 (85)
30 1whw_A Hypothetical protein ri 99.0 7.4E-10 2.5E-14 80.6 7.5 74 66-145 12-91 (99)
31 2dnz_A Probable RNA-binding pr 99.0 7.5E-10 2.6E-14 79.8 7.1 74 66-145 9-88 (95)
32 3md1_A Nuclear and cytoplasmic 99.0 5.6E-10 1.9E-14 78.4 6.2 70 67-142 6-81 (83)
33 3bs9_A Nucleolysin TIA-1 isofo 99.0 4.6E-10 1.6E-14 79.5 5.7 71 66-142 10-86 (87)
34 2diu_A KIAA0430 protein; struc 99.0 2.9E-10 9.9E-15 86.5 4.9 63 67-145 14-87 (96)
35 2cq1_A PTB-like protein L; RRM 99.0 8.4E-10 2.9E-14 83.0 7.2 68 66-145 19-94 (101)
36 2x1f_A MRNA 3'-END-processing 99.0 7.9E-10 2.7E-14 80.3 6.7 73 67-145 7-85 (96)
37 2lkz_A RNA-binding protein 5; 99.0 4.5E-10 1.5E-14 83.5 5.2 71 65-141 12-94 (95)
38 2cq0_A Eukaryotic translation 99.0 7.9E-10 2.7E-14 81.1 6.3 74 66-145 19-98 (103)
39 1sjq_A Polypyrimidine tract-bi 99.0 5.5E-10 1.9E-14 85.5 5.6 69 66-146 20-96 (105)
40 2ywk_A Putative RNA-binding pr 99.0 5.7E-10 2E-14 80.4 5.4 69 66-141 20-94 (95)
41 3lqv_A PRE-mRNA branch site pr 99.0 2.6E-10 8.8E-15 85.3 3.6 69 66-143 12-86 (115)
42 2dnm_A SRP46 splicing factor; 99.0 6E-10 2.1E-14 81.8 5.4 73 66-144 17-95 (103)
43 2lxi_A RNA-binding protein 10; 99.0 4.3E-10 1.5E-14 82.0 4.6 72 66-143 5-84 (91)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.0 6.8E-10 2.3E-14 81.2 5.7 74 66-145 16-95 (102)
45 1wex_A Hypothetical protein (r 99.0 5.5E-10 1.9E-14 84.4 5.2 68 66-145 19-94 (104)
46 1x4d_A Matrin 3; structural ge 99.0 4.9E-10 1.7E-14 84.9 4.9 67 67-145 20-96 (102)
47 2khc_A Testis-specific RNP-typ 99.0 6.6E-10 2.3E-14 83.4 5.6 69 66-140 44-118 (118)
48 2a3j_A U1 small nuclear ribonu 99.0 8.3E-10 2.8E-14 86.3 6.1 71 66-145 33-113 (127)
49 2cqc_A Arginine/serine-rich sp 99.0 7.7E-10 2.6E-14 79.5 5.5 70 66-141 19-94 (95)
50 2cpj_A Non-POU domain-containi 98.9 9.8E-10 3.4E-14 80.2 5.9 68 66-145 19-92 (99)
51 2fc8_A NCL protein; structure 98.9 1.1E-09 3.9E-14 80.0 6.0 74 66-145 19-95 (102)
52 2dgo_A Cytotoxic granule-assoc 98.9 1.2E-09 4E-14 81.7 6.1 74 66-145 19-98 (115)
53 1x5s_A Cold-inducible RNA-bind 98.9 1.1E-09 3.6E-14 80.1 5.7 74 66-145 16-95 (102)
54 2cqi_A Nucleolysin TIAR; RNA r 98.9 1.6E-09 5.3E-14 79.5 6.6 72 66-145 19-96 (103)
55 2d9p_A Polyadenylate-binding p 98.9 1.2E-09 4.1E-14 80.1 5.9 72 66-145 19-96 (103)
56 1x5t_A Splicing factor 3B subu 98.9 1.3E-09 4.4E-14 78.7 5.8 74 66-145 9-89 (96)
57 2cq3_A RNA-binding protein 9; 98.9 2.2E-09 7.5E-14 78.7 7.1 72 66-145 19-96 (103)
58 1x5u_A Splicing factor 3B subu 98.9 1.4E-09 4.9E-14 79.8 6.0 74 66-145 19-98 (105)
59 2ad9_A Polypyrimidine tract-bi 98.9 1.3E-09 4.3E-14 85.1 5.9 69 66-146 35-111 (119)
60 2ytc_A PRE-mRNA-splicing facto 98.9 1E-09 3.4E-14 77.6 4.8 63 66-140 16-85 (85)
61 2cph_A RNA binding motif prote 98.9 1.7E-09 5.8E-14 79.5 6.2 75 66-145 19-100 (107)
62 2dgs_A DAZ-associated protein 98.9 2.5E-09 8.4E-14 77.9 7.0 73 66-145 14-92 (99)
63 2jrs_A RNA-binding protein 39; 98.9 9.2E-10 3.1E-14 82.6 4.7 72 66-143 30-107 (108)
64 1p27_B RNA-binding protein 8A; 98.9 1.2E-09 4E-14 80.5 5.2 71 66-142 27-103 (106)
65 2do4_A Squamous cell carcinoma 98.9 1.6E-09 5.3E-14 79.1 5.8 71 66-143 21-97 (100)
66 1oo0_B CG8781-PA, drosophila Y 98.9 1.7E-09 5.9E-14 80.2 6.1 71 66-142 30-106 (110)
67 3p5t_L Cleavage and polyadenyl 98.9 6.3E-10 2.2E-14 80.3 3.5 72 67-144 6-85 (90)
68 2cpz_A CUG triplet repeat RNA- 98.9 1.4E-09 4.7E-14 81.5 5.5 74 66-145 29-108 (115)
69 1x4g_A Nucleolysin TIAR; struc 98.9 2E-09 6.7E-14 80.1 6.2 68 66-145 29-102 (109)
70 2fy1_A RNA-binding motif prote 98.9 2E-09 7E-14 81.7 6.3 73 66-145 11-89 (116)
71 1x4a_A Splicing factor, argini 98.9 2.4E-09 8.2E-14 79.4 6.5 70 66-144 26-101 (109)
72 2kxn_B Transformer-2 protein h 98.9 2.3E-09 7.8E-14 83.2 6.6 71 66-142 50-126 (129)
73 3ulh_A THO complex subunit 4; 98.9 1.6E-09 5.4E-14 79.8 5.3 68 66-140 33-106 (107)
74 2la6_A RNA-binding protein FUS 98.9 1.6E-09 5.6E-14 79.0 5.4 69 66-140 17-99 (99)
75 2do0_A HnRNP M, heterogeneous 98.9 2.1E-09 7.3E-14 80.0 5.9 72 66-144 19-96 (114)
76 2dnh_A Bruno-like 5, RNA bindi 98.9 1.9E-09 6.5E-14 79.1 5.5 73 66-145 19-100 (105)
77 1x4h_A RNA-binding protein 28; 98.9 2.8E-09 9.6E-14 78.8 6.4 74 66-145 19-104 (111)
78 2dgt_A RNA-binding protein 30; 98.9 2.5E-09 8.6E-14 77.0 5.8 66 66-145 14-85 (92)
79 2div_A TRNA selenocysteine ass 98.9 1.5E-09 5.1E-14 78.9 4.7 72 66-143 13-95 (99)
80 2cpi_A CCR4-NOT transcription 98.9 3.3E-09 1.1E-13 79.5 6.7 76 66-144 19-103 (111)
81 2fc9_A NCL protein; structure 98.9 3.4E-09 1.2E-13 77.4 6.6 72 66-144 19-93 (101)
82 2kt5_A RNA and export factor-b 98.9 4.4E-09 1.5E-13 79.8 7.4 73 66-145 39-117 (124)
83 2wbr_A GW182, gawky, LD47780P; 98.9 3E-09 1E-13 79.7 6.3 63 66-140 11-79 (89)
84 2cpe_A RNA-binding protein EWS 98.9 2.7E-09 9.4E-14 79.4 6.1 74 66-145 19-106 (113)
85 2dgx_A KIAA0430 protein; RRM d 98.9 3.4E-09 1.1E-13 77.4 6.4 70 66-144 13-92 (96)
86 2dnq_A RNA-binding protein 4B; 98.9 2.9E-09 9.9E-14 76.4 5.8 66 66-145 12-83 (90)
87 2err_A Ataxin-2-binding protei 98.9 2.4E-09 8.3E-14 80.1 5.5 70 66-143 33-108 (109)
88 2la4_A Nuclear and cytoplasmic 98.9 1.7E-09 5.8E-14 79.1 4.6 64 66-141 31-100 (101)
89 3ucg_A Polyadenylate-binding p 98.9 3.2E-09 1.1E-13 75.4 5.9 69 67-142 11-85 (89)
90 2hvz_A Splicing factor, argini 98.9 1.7E-09 5.7E-14 79.1 4.4 67 67-144 5-77 (101)
91 2i2y_A Fusion protein consists 98.9 3E-09 1E-13 83.2 6.1 66 66-142 77-148 (150)
92 2dgu_A Heterogeneous nuclear r 98.9 3.4E-09 1.2E-13 78.0 6.0 66 66-145 15-86 (103)
93 2i2y_A Fusion protein consists 98.9 1.6E-09 5.5E-14 84.8 4.5 85 103-211 13-98 (150)
94 2dgp_A Bruno-like 4, RNA bindi 98.9 3.5E-09 1.2E-13 77.8 6.0 74 66-145 17-99 (106)
95 1x4f_A Matrin 3; structural ge 98.9 2.3E-09 7.9E-14 82.7 5.2 68 66-145 29-105 (112)
96 2dnp_A RNA-binding protein 14; 98.8 3.7E-09 1.3E-13 75.9 5.8 65 66-144 13-83 (90)
97 2cqp_A RNA-binding protein 12; 98.8 1.9E-09 6.4E-14 78.3 4.3 71 66-142 19-95 (98)
98 2cpf_A RNA binding motif prote 98.8 4.3E-09 1.5E-13 76.3 5.8 76 66-145 9-91 (98)
99 2ek1_A RNA-binding protein 12; 98.8 2.3E-09 7.9E-14 77.2 4.2 70 66-141 19-94 (95)
100 3ex7_B RNA-binding protein 8A; 98.8 3.7E-09 1.3E-13 80.1 5.4 74 66-145 26-105 (126)
101 1u6f_A Tcubp1, RNA-binding pro 98.8 2.8E-09 9.4E-14 82.2 4.7 74 66-145 46-125 (139)
102 1p1t_A Cleavage stimulation fa 98.8 2.6E-09 9E-14 78.1 4.3 73 67-145 13-91 (104)
103 1nu4_A U1A RNA binding domain; 98.8 4E-09 1.4E-13 76.2 5.2 71 66-145 12-92 (97)
104 1whx_A Hypothetical protein ri 98.8 3.6E-09 1.2E-13 79.7 5.2 67 67-145 15-87 (111)
105 1x4c_A Splicing factor, argini 98.8 6.5E-09 2.2E-13 77.4 6.4 65 66-143 19-94 (108)
106 2dgw_A Probable RNA-binding pr 98.8 4.3E-09 1.5E-13 75.5 5.2 69 66-142 14-87 (91)
107 2kn4_A Immunoglobulin G-bindin 98.8 5.2E-09 1.8E-13 82.1 6.1 73 66-144 74-152 (158)
108 2cq4_A RNA binding motif prote 98.8 4.4E-09 1.5E-13 78.6 5.4 71 66-143 29-105 (114)
109 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.8 5.6E-09 1.9E-13 79.8 6.1 68 66-139 67-140 (140)
110 4a8x_A RNA-binding protein wit 98.8 4.2E-09 1.5E-13 74.4 4.9 72 66-142 8-85 (88)
111 2cqd_A RNA-binding region cont 98.8 5.6E-09 1.9E-13 78.2 5.8 72 66-144 21-98 (116)
112 1h2v_Z 20 kDa nuclear CAP bind 98.8 5.5E-09 1.9E-13 82.2 5.9 73 66-144 43-121 (156)
113 2cpd_A Apobec-1 stimulating pr 98.8 9.3E-09 3.2E-13 75.0 6.6 65 66-144 19-91 (99)
114 1why_A Hypothetical protein ri 98.8 7.2E-09 2.5E-13 75.3 5.9 66 66-142 21-93 (97)
115 2xnq_A Nuclear polyadenylated 98.8 8.4E-09 2.9E-13 75.8 6.2 63 66-142 26-95 (97)
116 2dng_A Eukaryotic translation 98.8 6.7E-09 2.3E-13 76.3 5.6 72 66-144 19-95 (103)
117 1wg1_A KIAA1579 protein, homol 98.8 8.8E-09 3E-13 73.9 6.1 68 66-145 9-81 (88)
118 2dgv_A HnRNP M, heterogeneous 98.8 4.4E-09 1.5E-13 75.2 4.5 72 66-145 12-89 (92)
119 2jvo_A Nucleolar protein 3; nu 98.8 8.4E-09 2.9E-13 77.5 6.1 64 66-143 35-104 (108)
120 2j76_E EIF-4B, EIF4B, eukaryot 98.8 1.2E-08 4.2E-13 74.9 6.7 72 66-143 23-99 (100)
121 2ki2_A SS-DNA binding protein 98.8 3.5E-09 1.2E-13 75.7 3.7 72 67-145 6-83 (90)
122 1x4e_A RNA binding motif, sing 98.8 3E-09 1E-13 75.2 3.2 69 66-140 9-83 (85)
123 2mss_A Protein (musashi1); RNA 98.8 5.1E-09 1.7E-13 72.4 4.2 66 67-139 4-75 (75)
124 1x5o_A RNA binding motif, sing 98.8 9.9E-09 3.4E-13 76.5 5.9 70 66-142 29-112 (114)
125 2dhg_A TRNA selenocysteine ass 98.8 6.2E-09 2.1E-13 76.3 4.7 73 66-145 13-93 (104)
126 2kvi_A Nuclear polyadenylated 98.8 7.1E-09 2.4E-13 75.5 4.8 65 66-144 14-85 (96)
127 2lea_A Serine/arginine-rich sp 98.8 5.4E-09 1.8E-13 81.6 4.3 74 66-145 51-130 (135)
128 1wi8_A EIF-4B, eukaryotic tran 98.7 1.7E-08 5.7E-13 74.2 6.5 73 66-145 19-97 (104)
129 3ns6_A Eukaryotic translation 98.7 3.3E-09 1.1E-13 78.3 2.6 70 66-141 10-92 (100)
130 3n9u_C Cleavage and polyadenyl 98.7 8.7E-09 3E-13 82.7 5.2 74 66-145 59-140 (156)
131 2jwn_A Embryonic polyadenylate 98.7 7E-09 2.4E-13 78.4 4.2 70 67-143 41-116 (124)
132 1x4b_A Heterogeneous nuclear r 98.7 1.5E-08 5.3E-13 75.8 6.1 73 66-145 31-109 (116)
133 3md3_A Nuclear and cytoplasmic 98.7 1.3E-08 4.5E-13 78.2 5.7 70 66-141 91-166 (166)
134 2cqh_A IGF-II mRNA-binding pro 98.7 9.7E-09 3.3E-13 73.9 4.6 68 66-145 12-86 (93)
135 3pgw_A U1-A; protein-RNA compl 98.7 1.4E-08 4.9E-13 85.9 6.4 66 66-141 211-282 (282)
136 2dis_A Unnamed protein product 98.7 1.4E-08 4.8E-13 74.9 5.6 75 66-145 12-95 (109)
137 2dh8_A DAZ-associated protein 98.7 9.1E-09 3.1E-13 75.6 4.3 73 66-145 20-98 (105)
138 1rk8_A CG8781-PA, CG8781-PA pr 98.7 1.3E-08 4.4E-13 81.2 5.4 73 66-144 76-154 (165)
139 2m2b_A RNA-binding protein 10; 98.7 8.5E-09 2.9E-13 79.4 3.5 71 66-143 27-109 (131)
140 2qfj_A FBP-interacting repress 98.7 2E-08 6.9E-13 80.9 5.9 74 66-145 129-208 (216)
141 2cpx_A Hypothetical protein FL 98.7 2.7E-08 9.2E-13 74.1 5.9 70 66-145 29-108 (115)
142 1uaw_A Mouse-musashi-1; RNP-ty 98.7 1.9E-08 6.6E-13 69.5 4.7 66 67-139 5-76 (77)
143 2nlw_A Eukaryotic translation 98.7 1.6E-08 5.3E-13 75.1 4.5 68 66-141 19-99 (105)
144 1wf1_A RNA-binding protein RAL 98.6 2.8E-08 9.7E-13 73.8 5.4 64 66-143 31-101 (110)
145 1fjc_A Nucleolin RBD2, protein 98.6 1.5E-08 5.2E-13 73.1 3.8 70 66-143 20-92 (96)
146 2rs2_A Musashi-1, RNA-binding 98.6 5.2E-08 1.8E-12 72.9 6.6 71 66-143 29-105 (109)
147 1x5p_A Negative elongation fac 98.6 5.7E-08 2E-12 70.6 6.4 65 67-145 20-90 (97)
148 3s7r_A Heterogeneous nuclear r 98.6 3.6E-08 1.2E-12 69.9 5.1 67 66-139 15-87 (87)
149 2f3j_A RNA and export factor b 98.6 4.6E-08 1.6E-12 79.8 6.4 73 66-145 92-170 (177)
150 1iqt_A AUF1, heterogeneous nuc 98.6 2.3E-08 7.9E-13 68.9 3.8 66 67-139 4-75 (75)
151 4f02_A Polyadenylate-binding p 98.6 2.6E-08 9E-13 81.9 4.8 70 67-144 108-183 (213)
152 2e5j_A Methenyltetrahydrofolat 98.6 4.1E-08 1.4E-12 71.4 5.2 66 66-142 23-94 (97)
153 2jvr_A Nucleolar protein 3; RN 98.6 4.7E-08 1.6E-12 74.8 5.6 67 66-142 32-105 (111)
154 3q2s_C Cleavage and polyadenyl 98.6 2.5E-08 8.5E-13 84.5 4.4 74 66-145 72-153 (229)
155 2kn4_A Immunoglobulin G-bindin 98.6 7.3E-08 2.5E-12 75.5 6.7 83 103-211 13-95 (158)
156 2krb_A Eukaryotic translation 98.6 1.6E-08 5.5E-13 71.3 2.4 63 67-137 6-81 (81)
157 3beg_B Splicing factor, argini 98.6 6.1E-08 2.1E-12 73.2 5.8 62 66-140 20-87 (115)
158 2cqg_A TDP-43, TAR DNA-binding 98.6 6.6E-08 2.3E-12 70.7 5.8 72 66-145 19-96 (103)
159 2cpy_A RNA-binding protein 12; 98.6 4.4E-08 1.5E-12 73.6 4.8 72 66-145 19-97 (114)
160 2e44_A Insulin-like growth fac 98.6 6E-08 2E-12 69.9 5.3 68 66-143 19-93 (96)
161 1s79_A Lupus LA protein; RRM, 98.6 4.6E-08 1.6E-12 73.2 4.8 67 67-141 16-88 (103)
162 2g4b_A Splicing factor U2AF 65 98.6 4.6E-08 1.6E-12 76.1 4.8 68 66-139 98-171 (172)
163 2lcw_A RNA-binding protein FUS 98.0 6.9E-09 2.3E-13 77.9 0.0 74 66-145 11-98 (116)
164 3nmr_A Cugbp ELAV-like family 98.6 6.2E-08 2.1E-12 75.2 5.2 68 66-139 99-174 (175)
165 2db1_A Heterogeneous nuclear r 98.6 4.1E-08 1.4E-12 74.6 4.0 71 66-144 21-100 (118)
166 1b7f_A Protein (SXL-lethal pro 98.6 6.2E-08 2.1E-12 74.9 5.1 68 66-139 93-168 (168)
167 1qm9_A Polypyrimidine tract-bi 98.5 9.3E-08 3.2E-12 76.7 5.8 67 66-142 124-197 (198)
168 1fje_B Nucleolin RBD12, protei 98.5 1.5E-07 5.2E-12 73.7 6.8 69 66-142 103-174 (175)
169 3pgw_S U1-70K; protein-RNA com 98.5 1E-07 3.5E-12 88.2 6.7 74 66-145 106-185 (437)
170 2dnn_A RNA-binding protein 12; 98.5 1.8E-07 6.1E-12 71.1 6.9 69 66-142 20-93 (109)
171 2yh0_A Splicing factor U2AF 65 98.5 7E-08 2.4E-12 76.7 4.8 72 66-143 118-195 (198)
172 2lmi_A GRSF-1, G-rich sequence 98.5 6.2E-08 2.1E-12 72.0 4.0 71 66-144 15-94 (107)
173 1fj7_A Nucleolin RBD1, protein 98.5 1.2E-07 4E-12 69.2 5.1 71 66-144 21-97 (101)
174 1wel_A RNA-binding protein 12; 98.5 3.6E-08 1.2E-12 75.0 2.3 72 66-144 29-106 (124)
175 2adc_A Polypyrimidine tract-bi 98.5 1.8E-07 6.1E-12 77.7 6.7 67 66-142 155-228 (229)
176 2cjk_A Nuclear polyadenylated 98.5 7.4E-08 2.5E-12 74.6 3.7 69 67-142 92-166 (167)
177 3egn_A RNA-binding protein 40; 98.5 1.1E-07 3.6E-12 73.8 4.6 70 66-144 49-132 (143)
178 2hzc_A Splicing factor U2AF 65 98.5 1.8E-07 6.1E-12 65.9 5.2 58 67-137 11-85 (87)
179 1fxl_A Paraneoplastic encephal 98.5 1.4E-07 4.7E-12 72.5 5.0 68 66-139 92-167 (167)
180 1wez_A HnRNP H', FTP-3, hetero 98.4 1.6E-07 5.3E-12 69.9 4.3 70 66-143 19-93 (102)
181 2hgl_A HNRPF protein, heteroge 98.4 1.1E-07 3.8E-12 75.0 3.5 71 66-144 48-127 (136)
182 1wg5_A Heterogeneous nuclear r 98.4 2.7E-07 9.2E-12 68.2 5.3 72 66-145 19-97 (104)
183 2cq2_A Hypothetical protein LO 98.4 2.1E-07 7.3E-12 72.0 4.4 66 67-144 30-108 (114)
184 1jmt_A Splicing factor U2AF 35 98.4 4.4E-07 1.5E-11 68.1 5.9 51 82-139 53-103 (104)
185 2e5g_A U6 snRNA-specific termi 98.4 3.5E-07 1.2E-11 66.0 4.8 67 66-144 12-84 (94)
186 2bz2_A Negative elongation fac 98.4 3.4E-07 1.2E-11 70.2 4.8 65 67-145 44-114 (121)
187 2pe8_A Splicing factor 45; RRM 98.3 1.2E-06 4E-11 66.0 7.4 57 82-143 39-95 (105)
188 3v4m_A Splicing factor U2AF 65 98.3 9E-07 3.1E-11 66.6 6.8 56 82-141 41-96 (105)
189 2xs2_A Deleted in azoospermia- 98.3 1.8E-07 6.2E-12 68.2 2.4 67 67-142 14-86 (102)
190 3u1l_A PRE-mRNA-splicing facto 98.3 2.8E-07 9.7E-12 79.7 4.1 65 67-143 139-230 (240)
191 2d9o_A DNAJ (HSP40) homolog, s 98.3 6.1E-07 2.1E-11 67.5 5.3 59 72-143 27-91 (100)
192 1l3k_A Heterogeneous nuclear r 98.3 6.4E-07 2.2E-11 71.0 5.4 73 66-145 108-186 (196)
193 2dit_A HIV TAT specific factor 98.3 1.7E-06 5.9E-11 64.7 6.8 55 79-143 46-103 (112)
194 2hgn_A Heterogeneous nuclear r 98.3 3.7E-07 1.3E-11 72.4 3.0 71 66-144 50-125 (139)
195 1wf0_A TDP-43, TAR DNA-binding 98.3 4.5E-07 1.5E-11 64.6 3.1 66 67-145 10-81 (88)
196 2hgm_A HNRPF protein, heteroge 98.2 4.7E-07 1.6E-11 70.8 3.2 70 66-143 46-122 (126)
197 3s6e_A RNA-binding protein 39; 98.2 2E-06 6.8E-11 66.1 6.3 50 82-141 43-92 (114)
198 3d2w_A TAR DNA-binding protein 98.1 2.2E-06 7.6E-11 61.9 4.0 63 66-143 15-85 (89)
199 2voo_A Lupus LA protein; RNA-b 98.0 5.1E-06 1.7E-10 68.4 5.2 69 66-142 113-187 (193)
200 3ue2_A Poly(U)-binding-splicin 98.0 5.6E-06 1.9E-10 63.8 5.1 58 82-141 51-108 (118)
201 2dnl_A Cytoplasmic polyadenyla 98.0 1.1E-05 3.9E-10 60.3 6.6 70 66-141 12-87 (114)
202 2dnr_A Synaptojanin-1; RRM dom 98.0 9.1E-06 3.1E-10 61.0 5.4 46 82-142 41-86 (91)
203 3tyt_A Heterogeneous nuclear r 98.0 3.9E-06 1.4E-10 69.5 3.6 65 66-138 127-203 (205)
204 2dha_A FLJ20171 protein; RRM d 97.9 2.6E-06 8.8E-11 66.1 2.0 71 66-144 27-107 (123)
205 1wex_A Hypothetical protein (r 97.9 1.2E-05 4.3E-10 60.2 4.7 31 181-211 10-40 (104)
206 3r27_A HnRNP L, heterogeneous 97.9 1E-05 3.5E-10 61.2 4.1 31 181-211 16-46 (100)
207 3sde_A Paraspeckle component 1 97.9 8.7E-06 3E-10 68.9 3.9 73 67-145 101-182 (261)
208 2cq1_A PTB-like protein L; RRM 97.8 1.9E-05 6.4E-10 59.0 4.6 31 181-211 10-40 (101)
209 2j8a_A Histone-lysine N-methyl 97.7 1.2E-05 4.3E-10 64.4 2.9 73 66-144 6-98 (136)
210 2ad9_A Polypyrimidine tract-bi 97.7 3.5E-05 1.2E-09 59.7 4.7 31 181-211 26-56 (119)
211 3tht_A Alkylated DNA repair pr 97.7 2.5E-05 8.4E-10 70.8 4.4 87 67-165 23-121 (345)
212 1ufw_A Synaptojanin 2; RNP dom 97.6 5.6E-05 1.9E-09 57.2 5.0 42 82-138 50-91 (95)
213 2lea_A Serine/arginine-rich sp 97.6 2.2E-05 7.6E-10 60.8 2.4 68 104-211 5-72 (135)
214 3dxb_A Thioredoxin N-terminall 97.5 0.00011 3.7E-09 60.5 5.2 58 82-141 155-212 (222)
215 1x4d_A Matrin 3; structural ge 97.5 7.1E-05 2.4E-09 56.2 3.7 30 182-211 11-41 (102)
216 1sjq_A Polypyrimidine tract-bi 97.4 6.5E-05 2.2E-09 57.1 2.8 29 183-211 13-41 (105)
217 1why_A Hypothetical protein ri 97.4 0.00011 3.9E-09 52.8 3.5 30 182-211 13-42 (97)
218 1x4f_A Matrin 3; structural ge 97.4 0.00011 3.7E-09 56.3 3.6 30 182-211 21-51 (112)
219 1x4e_A RNA binding motif, sing 97.3 0.00015 5.1E-09 50.7 3.6 28 184-211 3-30 (85)
220 3d2w_A TAR DNA-binding protein 97.3 0.00015 5.1E-09 52.2 3.6 30 182-211 7-36 (89)
221 3mdf_A Peptidyl-prolyl CIS-tra 97.3 0.00017 6E-09 50.1 3.8 28 184-211 5-32 (85)
222 1wf0_A TDP-43, TAR DNA-binding 97.3 0.00017 5.8E-09 50.9 3.8 28 184-211 3-30 (88)
223 2cpj_A Non-POU domain-containi 97.3 0.00027 9.2E-09 50.9 4.8 31 181-211 10-40 (99)
224 2cqc_A Arginine/serine-rich sp 97.2 0.00016 5.6E-09 51.3 3.1 30 182-211 11-40 (95)
225 2e5h_A Zinc finger CCHC-type a 97.2 0.00022 7.7E-09 50.5 3.5 30 182-211 12-41 (94)
226 3s7r_A Heterogeneous nuclear r 97.2 0.00027 9.2E-09 49.5 3.8 28 184-211 9-36 (87)
227 2la6_A RNA-binding protein FUS 97.2 0.00027 9.1E-09 51.0 3.8 30 182-211 9-38 (99)
228 2dnh_A Bruno-like 5, RNA bindi 97.2 0.00028 9.7E-09 51.1 3.9 29 183-211 12-40 (105)
229 2ek1_A RNA-binding protein 12; 97.2 0.00025 8.5E-09 50.4 3.5 29 183-211 12-40 (95)
230 2dnq_A RNA-binding protein 4B; 97.2 0.00025 8.7E-09 50.2 3.5 28 184-211 6-33 (90)
231 2cqh_A IGF-II mRNA-binding pro 97.2 0.00025 8.7E-09 50.4 3.4 28 184-211 6-33 (93)
232 2dgt_A RNA-binding protein 30; 97.2 0.00026 9E-09 50.3 3.5 28 184-211 8-35 (92)
233 2ytc_A PRE-mRNA-splicing facto 97.2 0.00027 9.3E-09 49.2 3.4 28 184-211 10-37 (85)
234 2kvi_A Nuclear polyadenylated 97.1 0.00029 9.9E-09 50.7 3.6 29 183-211 7-36 (96)
235 1nu4_A U1A RNA binding domain; 97.1 0.00033 1.1E-08 50.0 3.8 29 183-211 5-37 (97)
236 1x4a_A Splicing factor, argini 97.1 0.00033 1.1E-08 51.3 3.8 29 183-211 19-47 (109)
237 2dgs_A DAZ-associated protein 97.1 0.00034 1.1E-08 50.3 3.8 28 184-211 8-35 (99)
238 3bs9_A Nucleolysin TIA-1 isofo 97.1 0.00029 9.9E-09 49.1 3.3 28 184-211 4-31 (87)
239 2div_A TRNA selenocysteine ass 97.1 0.0003 1E-08 50.4 3.3 28 184-211 7-34 (99)
240 2xnq_A Nuclear polyadenylated 97.1 0.00039 1.3E-08 50.5 3.9 31 181-211 17-48 (97)
241 2dnm_A SRP46 splicing factor; 97.1 0.00039 1.3E-08 50.3 3.8 29 183-211 10-38 (103)
242 2cpd_A Apobec-1 stimulating pr 97.1 0.00053 1.8E-08 49.3 4.5 29 182-210 11-39 (99)
243 2dgv_A HnRNP M, heterogeneous 97.1 0.00035 1.2E-08 49.3 3.5 28 184-211 6-33 (92)
244 2dnp_A RNA-binding protein 14; 97.1 0.00026 8.9E-09 50.1 2.8 28 184-211 7-34 (90)
245 1whw_A Hypothetical protein ri 97.1 0.00036 1.2E-08 50.1 3.5 28 184-211 6-33 (99)
246 2cq3_A RNA-binding protein 9; 97.1 0.00045 1.5E-08 50.0 4.1 30 182-211 11-40 (103)
247 2fc9_A NCL protein; structure 97.1 0.0004 1.4E-08 50.1 3.7 30 182-211 11-40 (101)
248 1x4h_A RNA-binding protein 28; 97.1 0.00037 1.3E-08 50.9 3.6 29 183-211 12-40 (111)
249 2cq0_A Eukaryotic translation 97.1 0.00034 1.2E-08 50.6 3.4 30 182-211 11-40 (103)
250 2do4_A Squamous cell carcinoma 97.1 0.00042 1.4E-08 49.9 3.7 28 184-211 15-42 (100)
251 3ulh_A THO complex subunit 4; 97.1 0.00039 1.3E-08 50.5 3.6 30 182-211 25-54 (107)
252 2dgu_A Heterogeneous nuclear r 97.1 0.00028 9.7E-09 51.3 2.8 29 183-211 8-36 (103)
253 2cqb_A Peptidyl-prolyl CIS-tra 97.1 0.00042 1.5E-08 49.9 3.7 30 182-211 8-37 (102)
254 2cph_A RNA binding motif prote 97.1 0.0004 1.4E-08 50.4 3.5 29 183-211 12-40 (107)
255 2do0_A HnRNP M, heterogeneous 97.0 0.00043 1.5E-08 50.8 3.7 30 182-211 11-40 (114)
256 1wi8_A EIF-4B, eukaryotic tran 97.0 0.00042 1.4E-08 50.3 3.6 28 184-211 13-40 (104)
257 1x5s_A Cold-inducible RNA-bind 97.0 0.00035 1.2E-08 50.4 3.0 29 183-211 9-37 (102)
258 2khc_A Testis-specific RNP-typ 97.0 0.00046 1.6E-08 51.1 3.7 30 182-211 36-65 (118)
259 2ywk_A Putative RNA-binding pr 97.0 0.00042 1.4E-08 49.2 3.3 30 182-211 12-41 (95)
260 2cpx_A Hypothetical protein FL 97.0 0.00026 8.7E-09 52.2 2.2 29 183-211 22-50 (115)
261 2cpz_A CUG triplet repeat RNA- 97.0 0.00045 1.5E-08 51.0 3.5 30 182-211 21-50 (115)
262 2lkz_A RNA-binding protein 5; 97.0 0.00046 1.6E-08 50.7 3.4 26 186-211 9-34 (95)
263 1x5u_A Splicing factor 3B subu 97.0 0.00056 1.9E-08 49.5 3.8 29 183-211 12-40 (105)
264 2d9p_A Polyadenylate-binding p 97.0 0.0005 1.7E-08 49.7 3.5 28 184-211 13-40 (103)
265 2cqi_A Nucleolysin TIAR; RNA r 97.0 0.00041 1.4E-08 50.2 3.0 29 183-211 12-40 (103)
266 1p27_B RNA-binding protein 8A; 97.0 0.00062 2.1E-08 49.3 3.9 29 183-211 20-48 (106)
267 2la4_A Nuclear and cytoplasmic 97.0 0.00056 1.9E-08 49.3 3.6 28 184-211 25-52 (101)
268 2e5j_A Methenyltetrahydrofolat 97.0 0.00055 1.9E-08 49.2 3.6 28 184-211 17-44 (97)
269 2dgp_A Bruno-like 4, RNA bindi 97.0 0.00038 1.3E-08 50.5 2.7 29 183-211 10-38 (106)
270 1wf1_A RNA-binding protein RAL 97.0 0.00091 3.1E-08 49.1 4.8 30 182-211 23-53 (110)
271 2cqp_A RNA-binding protein 12; 97.0 0.0006 2.1E-08 48.7 3.7 29 183-211 12-40 (98)
272 2cqg_A TDP-43, TAR DNA-binding 97.0 0.00081 2.8E-08 48.6 4.5 30 182-211 11-40 (103)
273 4fxv_A ELAV-like protein 1; RN 97.0 0.00064 2.2E-08 49.8 3.9 26 186-211 19-44 (99)
274 2cqd_A RNA-binding region cont 96.9 0.00059 2E-08 50.5 3.7 29 183-211 14-42 (116)
275 2cpe_A RNA-binding protein EWS 96.9 0.00069 2.4E-08 49.8 3.9 28 184-211 13-40 (113)
276 2e5g_A U6 snRNA-specific termi 96.9 0.00079 2.7E-08 48.1 4.0 27 185-211 7-33 (94)
277 3ex7_B RNA-binding protein 8A; 96.9 0.00066 2.2E-08 50.8 3.6 30 182-211 18-47 (126)
278 1oo0_B CG8781-PA, drosophila Y 96.9 0.00068 2.3E-08 49.6 3.6 30 182-211 22-51 (110)
279 2dgo_A Cytotoxic granule-assoc 96.9 0.00074 2.5E-08 49.8 3.6 30 182-211 11-40 (115)
280 2e5i_A Heterogeneous nuclear r 96.9 0.0014 4.9E-08 50.8 5.3 30 182-211 19-50 (124)
281 2dh8_A DAZ-associated protein 96.8 0.00054 1.9E-08 49.7 2.7 29 183-211 13-41 (105)
282 2dng_A Eukaryotic translation 96.8 0.00082 2.8E-08 48.7 3.7 29 183-211 12-40 (103)
283 2err_A Ataxin-2-binding protei 96.8 0.00097 3.3E-08 49.3 4.1 29 183-211 26-54 (109)
284 2jvo_A Nucleolar protein 3; nu 96.8 0.00082 2.8E-08 49.9 3.6 29 183-211 28-56 (108)
285 3egn_A RNA-binding protein 40; 96.8 0.00063 2.1E-08 52.3 3.1 30 182-211 41-70 (143)
286 1fjc_A Nucleolin RBD2, protein 96.8 0.00056 1.9E-08 48.7 2.6 29 183-211 13-41 (96)
287 2m2b_A RNA-binding protein 10; 96.8 0.00069 2.4E-08 51.6 3.0 28 184-211 21-48 (131)
288 1h2v_Z 20 kDa nuclear CAP bind 96.8 0.0011 3.7E-08 51.6 4.1 31 181-211 34-64 (156)
289 2jrs_A RNA-binding protein 39; 96.8 0.00091 3.1E-08 49.5 3.6 30 182-211 22-51 (108)
290 2kxn_B Transformer-2 protein h 96.7 0.00064 2.2E-08 52.2 2.6 30 182-211 42-71 (129)
291 1x4g_A Nucleolysin TIAR; struc 96.7 0.00077 2.6E-08 49.4 2.8 29 183-211 22-50 (109)
292 1x4c_A Splicing factor, argini 96.7 0.0011 3.9E-08 48.6 3.7 27 185-211 14-40 (108)
293 1x5o_A RNA binding motif, sing 96.7 0.0012 4.1E-08 48.5 3.8 29 183-211 22-50 (114)
294 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.7 0.0011 3.9E-08 49.9 3.7 30 182-211 59-88 (140)
295 3ucg_A Polyadenylate-binding p 96.7 0.001 3.5E-08 46.5 3.2 26 186-211 6-31 (89)
296 1s79_A Lupus LA protein; RRM, 96.7 0.00091 3.1E-08 49.6 3.0 27 185-211 10-36 (103)
297 1x4b_A Heterogeneous nuclear r 96.7 0.00084 2.9E-08 49.6 2.7 27 185-211 26-52 (116)
298 2rs2_A Musashi-1, RNA-binding 96.7 0.0011 3.7E-08 49.1 3.3 28 184-211 23-50 (109)
299 2cpy_A RNA-binding protein 12; 96.7 0.0014 4.9E-08 48.6 3.8 29 183-211 12-40 (114)
300 2xs2_A Deleted in azoospermia- 96.7 0.00093 3.2E-08 48.2 2.7 27 185-211 8-34 (102)
301 1fj7_A Nucleolin RBD1, protein 96.6 0.00076 2.6E-08 48.6 2.0 28 184-211 15-42 (101)
302 2kt5_A RNA and export factor-b 96.6 0.0013 4.5E-08 49.2 3.4 29 183-211 32-60 (124)
303 1wez_A HnRNP H', FTP-3, hetero 96.6 0.0015 5E-08 48.1 3.6 28 184-211 13-40 (102)
304 2e44_A Insulin-like growth fac 96.6 0.00075 2.6E-08 48.1 1.9 27 185-211 14-40 (96)
305 2fc8_A NCL protein; structure 96.6 0.0015 5.2E-08 46.9 3.4 28 183-210 12-39 (102)
306 3zzy_A Polypyrimidine tract-bi 96.5 0.0018 6E-08 51.0 3.8 29 183-211 23-53 (130)
307 2cq4_A RNA binding motif prote 96.5 0.0015 5.2E-08 48.0 3.2 26 186-211 25-50 (114)
308 2hzc_A Splicing factor U2AF 65 96.5 0.0012 4E-08 46.0 2.4 26 185-210 5-30 (87)
309 2j76_E EIF-4B, EIF4B, eukaryot 96.5 0.00087 3E-08 48.6 1.7 30 182-211 15-44 (100)
310 1wg5_A Heterogeneous nuclear r 96.5 0.0023 8E-08 46.7 4.0 28 184-211 13-40 (104)
311 1rk8_A CG8781-PA, CG8781-PA pr 96.5 0.0017 6E-08 51.2 3.5 29 183-211 69-97 (165)
312 1u6f_A Tcubp1, RNA-binding pro 96.5 0.0015 5.1E-08 49.7 2.9 29 183-211 39-67 (139)
313 2diu_A KIAA0430 protein; struc 96.4 0.0022 7.7E-08 48.4 3.7 29 183-211 5-38 (96)
314 2jwn_A Embryonic polyadenylate 96.4 0.0012 3.9E-08 49.3 1.7 27 185-211 35-61 (124)
315 2cq2_A Hypothetical protein LO 96.3 0.0012 4.2E-08 50.7 1.8 29 183-211 22-52 (114)
316 1wel_A RNA-binding protein 12; 96.3 0.003 1E-07 47.4 3.9 28 184-211 23-50 (124)
317 2dgx_A KIAA0430 protein; RRM d 96.3 0.0023 7.9E-08 46.0 2.8 28 184-211 7-38 (96)
318 2db1_A Heterogeneous nuclear r 96.2 0.0037 1.3E-07 46.9 3.9 27 185-211 16-42 (118)
319 2f3j_A RNA and export factor b 96.2 0.0027 9.2E-08 51.3 3.3 30 182-211 84-113 (177)
320 2l9w_A U4/U6 snRNA-associated- 96.2 0.0089 3E-07 46.6 5.8 59 67-137 26-95 (117)
321 2a3j_A U1 small nuclear ribonu 96.1 0.0029 9.8E-08 48.9 2.9 29 183-211 26-58 (127)
322 2dha_A FLJ20171 protein; RRM d 96.1 0.004 1.4E-07 47.9 3.5 28 184-211 21-48 (123)
323 2jvr_A Nucleolar protein 3; RN 96.1 0.0031 1.1E-07 47.7 2.8 27 185-211 27-53 (111)
324 3beg_B Splicing factor, argini 96.0 0.0023 7.9E-08 47.7 1.9 26 186-211 16-41 (115)
325 1wg1_A KIAA1579 protein, homol 96.0 0.0049 1.7E-07 43.4 3.4 26 185-210 4-29 (88)
326 2cpi_A CCR4-NOT transcription 96.0 0.0024 8.4E-08 47.1 1.8 27 185-211 14-43 (111)
327 2lmi_A GRSF-1, G-rich sequence 96.0 0.0041 1.4E-07 45.6 3.0 27 185-211 10-36 (107)
328 2dgw_A Probable RNA-binding pr 95.9 0.0066 2.2E-07 42.7 3.8 26 185-210 9-34 (91)
329 2hgn_A Heterogeneous nuclear r 95.9 0.0048 1.6E-07 48.5 3.2 27 185-211 45-71 (139)
330 1owx_A Lupus LA protein, SS-B, 95.8 0.014 4.6E-07 45.5 5.5 66 67-144 23-98 (121)
331 3n9u_C Cleavage and polyadenyl 95.8 0.0053 1.8E-07 48.7 3.2 27 185-211 54-80 (156)
332 2nlw_A Eukaryotic translation 95.8 0.0057 1.9E-07 44.6 3.0 27 185-211 14-46 (105)
333 2hgl_A HNRPF protein, heteroge 95.7 0.0078 2.7E-07 47.0 3.9 27 185-211 43-69 (136)
334 1sjr_A Polypyrimidine tract-bi 95.7 0.0057 2E-07 49.9 3.0 30 182-211 40-71 (164)
335 2hgm_A HNRPF protein, heteroge 95.4 0.012 4.1E-07 45.6 3.8 28 184-211 40-67 (126)
336 1x5p_A Negative elongation fac 95.2 0.015 5.3E-07 41.4 3.7 28 182-211 11-38 (97)
337 3pgw_S U1-70K; protein-RNA com 95.2 0.01 3.6E-07 54.6 3.2 29 183-211 99-127 (437)
338 3q2s_C Cleavage and polyadenyl 95.1 0.013 4.4E-07 49.2 3.4 26 186-211 68-93 (229)
339 1owx_A Lupus LA protein, SS-B, 95.1 0.018 6.1E-07 44.8 3.8 29 183-211 15-44 (121)
340 2wbr_A GW182, gawky, LD47780P; 94.9 0.011 3.7E-07 43.9 2.2 27 185-211 6-32 (89)
341 2voo_A Lupus LA protein; RNA-b 94.9 0.012 4.3E-07 47.9 2.7 26 186-211 109-134 (193)
342 2bz2_A Negative elongation fac 94.4 0.035 1.2E-06 41.9 3.9 27 183-211 36-62 (121)
343 2dnn_A RNA-binding protein 12; 94.0 0.035 1.2E-06 41.5 3.2 25 186-210 16-40 (109)
344 3u1l_A PRE-mRNA-splicing facto 93.2 0.034 1.1E-06 47.8 2.0 29 183-211 131-168 (240)
345 2dhx_A Poly (ADP-ribose) polym 92.5 0.15 5E-06 39.0 4.5 57 66-137 12-79 (104)
346 2dit_A HIV TAT specific factor 90.7 0.18 6.1E-06 37.0 3.2 30 182-211 11-51 (112)
347 3ue2_A Poly(U)-binding-splicin 88.3 0.22 7.5E-06 37.8 2.2 28 184-211 18-50 (118)
348 1wey_A Calcipressin 1; structu 88.2 1.2 4.1E-05 33.8 6.2 55 78-144 29-86 (104)
349 1uw4_A UPF3X; nonsense mediate 80.2 4.3 0.00015 29.8 6.0 62 66-130 5-72 (91)
350 1whv_A Poly(A)-specific ribonu 79.0 1.5 5.3E-05 33.1 3.3 25 186-211 16-40 (100)
351 2d9o_A DNAJ (HSP40) homolog, s 72.7 3.1 0.00011 30.4 3.4 16 196-211 27-42 (100)
352 1wwh_A Nucleoporin 35, nucleop 60.3 7.9 0.00027 29.9 3.6 66 67-145 29-100 (119)
353 2l08_A Regulator of nonsense t 57.7 18 0.00061 26.9 5.1 62 66-130 13-80 (97)
354 4eyt_A Telomerase associated p 53.1 2.4 8.3E-05 32.1 -0.4 64 103-172 46-109 (129)
355 2lsl_A Telomerase associated p 57.9 2.9 0.0001 32.0 0.0 41 102-145 76-116 (137)
356 2g0c_A ATP-dependent RNA helic 50.7 20 0.00069 24.1 4.1 44 82-140 32-75 (76)
357 2l08_A Regulator of nonsense t 42.6 14 0.00048 27.5 2.4 23 186-208 9-31 (97)
358 1whv_A Poly(A)-specific ribonu 36.3 16 0.00054 27.5 1.8 49 69-129 22-75 (100)
359 3ctr_A Poly(A)-specific ribonu 31.9 22 0.00076 26.7 2.0 43 75-129 21-65 (101)
360 2l9w_A U4/U6 snRNA-associated- 30.8 28 0.00095 26.9 2.4 24 187-210 22-45 (117)
361 3off_A LDLR chaperone BOCA; ME 23.6 40 0.0014 24.8 2.1 26 102-127 51-76 (90)
362 2eqj_A Metal-response element- 21.3 74 0.0025 22.1 2.9 13 102-114 40-52 (66)
363 3ofh_A LDLR chaperone MESD; mo 20.6 79 0.0027 23.2 3.1 25 103-127 51-75 (89)
No 1
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=2.2e-26 Score=192.60 Aligned_cols=134 Identities=39% Similarity=0.642 Sum_probs=122.7
Q ss_pred ccCCCC-CCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAP-PAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~-~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.||+ ..+++|.| |. +|++||+++ .++|+|||+|.|..+|+.||+.|||..|+ |++|+|.+
T Consensus 8 ~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~----------~~~g~afV~f~~~~~A~~Ai~~lng~~~~-g~~l~v~~ 76 (205)
T 3tyt_A 8 MVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK----------SKPGAAMVEMADGYAVDRAITHLNNNFMF-GQKMNVCV 76 (205)
T ss_dssp EEECCCTTTCCHHHHHHHHTTTSCEEEEEECT----------TSTTCEEEEESSHHHHHHHHHHHTTCEET-TEECEEEE
T ss_pred EEeCCCcccCCHHHHHHHHHhcCCeEEEEEec----------CCCCEEEEEECCHHHHHHHHHHhCCCEEC-CceEEEEE
Confidence 489999 79999986 44 999999999 77899999999999999999999999999 99999999
Q ss_pred cCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 139 SKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 139 SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
||+..+.+ ..+..++++++.++||++++.+||..+..+.++++.+|+++|||.|||.++||++|+++|+++|
T Consensus 77 s~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G 148 (205)
T 3tyt_A 77 SKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG 148 (205)
T ss_dssp CSCSCCCC-CSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT
T ss_pred ccCCccCC-CcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC
Confidence 99988753 3446788888889999999999999988778889999999999999999999999999999987
No 2
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=147.03 Aligned_cols=132 Identities=27% Similarity=0.311 Sum_probs=116.6
Q ss_pred ccCCCCC-CCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPP-AFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~-~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.|||. .++.+.| |. .|..|++++ .++|.|||+|.+.++|+.|+..|+|..|. |++|+|.+
T Consensus 7 ~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~----------~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~ 75 (198)
T 1qm9_A 7 LVSNLNPERVTPQSLFILFGVYGDVQRVKILF----------NKKENALVQMADGNQAQLAMSHLNGHKLH-GKPIRITL 75 (198)
T ss_dssp EEECCCSSSCCHHHHHHHHHTTCCCSEEECST----------TCSSCCEEECTTTHHHHHHHHHHTTCCCS-SCCCEEEE
T ss_pred EEeCCCcccCCHHHHHHHHHhcCCEEEEEEEe----------CCCCEEEEEECCHHHHHHHHHHhCCCeec-CeEEEEEE
Confidence 3789999 9999986 44 999999999 77899999999999999999999999999 99999999
Q ss_pred cCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 139 SKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 139 SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
++...... +....+.....++|+.++.+||..+.......+.+|+.+|||.|||.++|+++|.++|+++|
T Consensus 76 a~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G 145 (198)
T 1qm9_A 76 SKHQNVQL---PREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 145 (198)
T ss_dssp CCCCSCCC---SSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred ecCCCcCC---CCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 99877652 34444455678999999999999987666667899999999999999999999999999987
No 3
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.80 E-value=3.6e-19 Score=148.94 Aligned_cols=132 Identities=27% Similarity=0.311 Sum_probs=117.1
Q ss_pred ccCCCCC-CCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPP-AFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~-~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.|||. .++.+.| |. .|..|++++ .++|.|||+|.+.++|+.|++.|+|..|. |++|+|.+
T Consensus 38 ~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~----------~~~g~afV~F~~~~~A~~Ai~~l~g~~~~-g~~l~v~~ 106 (229)
T 2adc_A 38 LVSNLNPERVTPQSLFILFGVYGDVQRVKILF----------NKKENALVQMADGNQAQLAMSHLNGHKLH-GKPIRITL 106 (229)
T ss_dssp EEESCCTTTCCHHHHHHHHHHHTCEEEEEECC----------TTSCCEEEEESCHHHHHHHHHHHTTCBCS-SSBCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHHhCCCeEEEEEEE----------CCCCEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEE
Confidence 4899999 9999986 44 999999999 77899999999999999999999999999 99999999
Q ss_pred cCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 139 SKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 139 SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
++...+.. +....+.....++|+.++.+|+..+.......+.+|+.+|+|.|||.++|+++|+++|+++|
T Consensus 107 a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 107 SKHQNVQL---PREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp CSCCCCCC---CCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred ecCccccC---ccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 99887653 33334445678999999999999987776677899999999999999999999999999987
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.56 E-value=1.2e-14 Score=113.24 Aligned_cols=102 Identities=21% Similarity=0.210 Sum_probs=85.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ +..+| ..+|.|||+|.+.++|+.|+..|+|..+. |++|+|.++
T Consensus 7 ~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~ 80 (168)
T 1b7f_A 7 IVNYLPQDMTDRELYALFRAIGPINTCRIMR--DYKTG---YSYGYAFVDFTSEMDSQRAIKVLNGITVR-NKRLKVSYA 80 (168)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEECCE--ETTTT---EECSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE--eCCCC---ccceEEEEEECCHHHHHHHHHhcCCCEeC-CcEEEEEec
Confidence 37899999999986 44 899999988 22222 34699999999999999999999999999 999999988
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+.... ..++.+|++.|||.++|+++|.++|+++|
T Consensus 81 ~~~~~--------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G 114 (168)
T 1b7f_A 81 RPGGE--------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG 114 (168)
T ss_dssp CCCSS--------------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSS
T ss_pred CCCcc--------------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCC
Confidence 74321 12357899999999999999999999987
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.55 E-value=1.6e-14 Score=111.85 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=85.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ +..+| ..+|+|||+|.+.++|+.|+..|+|..+. |++|+|.++
T Consensus 6 ~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~--~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~ 79 (167)
T 1fxl_A 6 IVNYLPQNMTQEEFRSLFGSIGEIESCKLVR--DKITG---QSLGYGFVNYIDPKDAEKAINTLNGLRLQ-TKTIKVSYA 79 (167)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCeEEEEEEe--CCCCC---cceeEEEEEECCHHHHHHHHHHcCCCccC-CceEEEEec
Confidence 37899999999986 44 899999998 33333 34699999999999999999999999999 999999988
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..... .++..|++.|||.++|+++|.++|+++|
T Consensus 80 ~~~~~~--------------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G 113 (167)
T 1fxl_A 80 RPSSAS--------------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYG 113 (167)
T ss_dssp CCCCGG--------------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCCccc--------------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcC
Confidence 743321 1246799999999999999999999987
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.5e-14 Score=111.93 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=85.8
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|||..++.+.| |. .|..|++++...+ ..+|+|+|+|.+.++|+.|+..|+|..+. |++|+|.+++
T Consensus 5 V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~i~v~~~~ 77 (166)
T 3md3_A 5 VGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN------KNVNYAFVEYHQSHDANIALQTLNGKQIE-NNIVKINWAF 77 (166)
T ss_dssp EEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------CCEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEECC
T ss_pred ECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCC------CCCCEEEEEeCCHHHHHHHHHHcCCCccC-CCeeEEEEcC
Confidence 6789999999975 55 9999999984332 34799999999999999999999999999 9999999886
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..... ...++.+|++.|||.++|+++|.++|+++|
T Consensus 78 ~~~~~------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G 112 (166)
T 3md3_A 78 QSQQS------------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP 112 (166)
T ss_dssp CCCCC------------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST
T ss_pred CCCCC------------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccC
Confidence 54321 123467899999999999999999999987
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2.1e-14 Score=122.08 Aligned_cols=70 Identities=11% Similarity=0.028 Sum_probs=61.5
Q ss_pred ccCCCCCCCcccc-------ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 66 DYYGAPPAFEFER-------SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 66 ~v~nl~~~i~~d~-------LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
.|.||+..++.+. +|. .|+.|++++ .+ ..+|+|||+|.+.++|+.||+.|+|..|. |++|+
T Consensus 13 ~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~ 83 (282)
T 3pgw_A 13 YINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SL------KMRGQAFVIFKEVSSATNALRSMQGFPFY-DKPMR 83 (282)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CC------CcceEEEEEECCHHHHHHHHHHhcCCeeC-CcEEE
Confidence 4899999999887 566 999999987 22 34799999999999999999999999999 99999
Q ss_pred EeecCCccc
Q psy17775 136 VAYSKQVFL 144 (211)
Q Consensus 136 V~~SK~~~i 144 (211)
|.+++....
T Consensus 84 v~~a~~~~~ 92 (282)
T 3pgw_A 84 IQYAKTDSD 92 (282)
T ss_pred EEEeccCcc
Confidence 999988664
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=5.7e-14 Score=112.17 Aligned_cols=107 Identities=11% Similarity=-0.008 Sum_probs=84.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|+.|++++ +..+| ..+|+|||+|.+.++|+.||.. +|..|. |+.|.|.++
T Consensus 17 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~A~~A~~~-~~~~~~-g~~l~v~~~ 89 (196)
T 1l3k_A 17 FIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTK---RSRGFGFVTYATVEEVDAAMNA-RPHKVD-GRVVEPKRA 89 (196)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHT-CSCEET-TEECEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE--cCCCC---CccceEEEEeCCHHHHHHHHhc-CCCEEC-CEEeeeecc
Confidence 38999999999986 55 899999998 33333 3478999999999999999976 999999 999999988
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+...... ......++.+|||.|||.++|+++|.++|+++|
T Consensus 90 ~~~~~~~--------------------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 129 (196)
T 1l3k_A 90 VSREDSQ--------------------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129 (196)
T ss_dssp CC-------------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTS
T ss_pred cCccccc--------------------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCC
Confidence 7644321 001224568999999999999999999999987
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=4.4e-14 Score=114.39 Aligned_cols=113 Identities=7% Similarity=0.056 Sum_probs=86.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|+|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 32 ~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~~ 105 (216)
T 2qfj_A 32 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSW--DSVTM---KHKGFAFVEYEVPEAAQLALEQMNSVMLG-GRNIKVGRP 105 (216)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEEECC--C-CC----CCCSEEEEEESSHHHHHHHHHHHSSCCCC--CCCEEECC
T ss_pred EEECCCCCCCHHHHHHHHHhCCCEEEEEEee--cCCCC---ccCceEEEEeCCHHHHHHHHHHccCCeeC-CeeEEEecC
Confidence 38999999999986 55 899999988 33334 45899999999999999999999999999 999999877
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+...... +..... .....++.+|||.|||.++|+++|.++|+++|
T Consensus 106 ~~~~~~~-----------~~~~~~----------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G 150 (216)
T 2qfj_A 106 SNIGQAQ-----------PIIDQL----------------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 150 (216)
T ss_dssp SCCGGGH-----------HHHHHH----------------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS
T ss_pred CCccccc-----------hhhhhh----------------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccC
Confidence 6543221 000000 00123567999999999999999999999987
No 10
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.45 E-value=1.2e-13 Score=114.15 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=87.5
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
-|.|||..++.+.| |. .|+.|++++ ++.++ ..+|+|||+|.+.++|+.||..|+|..+. |+.|++.++
T Consensus 19 fVgnLp~~~te~~L~~~F~~~G~I~~v~i~~--d~~tg---~~~G~afV~F~~~~~A~~Ai~~~~~~~~~-g~~i~~~~~ 92 (213)
T 4f02_A 19 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCR--DMITR---RSLGYAYVNFQQPADAERALDTMNFDVIK-GKPVRIMWS 92 (213)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCEEEEEEec--ccCCC---CccccccceeCCHHHHHHHHHHhhhhhcC-Ccccccccc
Confidence 38899999999986 55 999999998 55455 45799999999999999999999999999 999999887
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
....... ..++..|+|.|||.++||++|.++|+++|
T Consensus 93 ~~~~~~~------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G 128 (213)
T 4f02_A 93 QRDPSLR------------------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFG 128 (213)
T ss_dssp CCCTHHH------------------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred ccccccc------------------------------------ccccccceECCcccccHHHHHHHHHhhcC
Confidence 6544321 01235799999999999999999999987
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=1.3e-12 Score=104.30 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=84.5
Q ss_pred ccCCCCCCCccccc---cc--------------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCcee
Q psy17775 66 DYYGAPPAFEFERS---YN--------------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLL 128 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--------------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~L 128 (211)
.|.|||..++.+.| |. .|..+++.+ + +|+|||+|.+.++|+.|+ .|+|..|
T Consensus 8 ~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----------~-~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 8 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----------D-KNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp EEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----------T-TTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----------C-CCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 37899999999986 54 256666666 4 799999999999999999 8999999
Q ss_pred cCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhc
Q psy17775 129 CNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISG 208 (211)
Q Consensus 129 f~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~ 208 (211)
. |++|+|.+++....... .+.. . ....+. ........++.+|+|.|||.++|+++|.++|+
T Consensus 76 ~-g~~i~v~~~~~~~~~~~--------~~~~-------~--~~~~~~-~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 136 (198)
T 2yh0_A 76 Q-GQSLKIRRPHDYQPLPG--------MSEN-------P--SVYVPG-VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 136 (198)
T ss_dssp T-TEEEEEECCCCCCCCCC--------SSSC-------S--SCCCTT-SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH
T ss_pred c-CceEEEeCCCCCCCCCC--------CcCC-------C--cCCCCC-CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 9 99999999877543210 0000 0 000000 00112345778999999999999999999999
Q ss_pred cCC
Q psy17775 209 RTD 211 (211)
Q Consensus 209 ~~G 211 (211)
++|
T Consensus 137 ~~G 139 (198)
T 2yh0_A 137 SFG 139 (198)
T ss_dssp TBS
T ss_pred HcC
Confidence 987
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.39 E-value=1.4e-12 Score=102.02 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=78.9
Q ss_pred cCCCCCCCccccc---cc--------------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceec
Q psy17775 67 YYGAPPAFEFERS---YN--------------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLC 129 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn--------------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf 129 (211)
|.|||..++.+.| |. .|..+++.+ + +|+|||+|.+.++|+.|+ .|+|..|.
T Consensus 9 V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~----------~-~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----------D-KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET----------T-TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred EcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC----------C-CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 7899999999986 43 356677776 4 799999999999999999 89999999
Q ss_pred CCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhcc
Q psy17775 130 NGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGR 209 (211)
Q Consensus 130 ~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~ 209 (211)
|++|+|.+++..... +++.+|++.|||.++|+++|.++|++
T Consensus 77 -g~~i~v~~~~~~~~~--------------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~ 117 (172)
T 2g4b_A 77 -GQSLKIRRPHDYQPL--------------------------------------PGAHKLFIGGLPNYLNDDQVKELLTS 117 (172)
T ss_dssp -TEECEEECCSSCCCC--------------------------------------TTTTCEEEECCCTTCCHHHHHHHHHT
T ss_pred -CceeeecCCcccCCC--------------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHh
Confidence 999999876543211 12578999999999999999999999
Q ss_pred CC
Q psy17775 210 TD 211 (211)
Q Consensus 210 ~G 211 (211)
+|
T Consensus 118 ~G 119 (172)
T 2g4b_A 118 FG 119 (172)
T ss_dssp TS
T ss_pred cC
Confidence 87
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.38 E-value=1.4e-12 Score=111.09 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=81.9
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++.+ + +|+|||+|.+..+|+.|+..|+|..|. |++|+|.++
T Consensus 26 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~----------~-kg~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~a 93 (261)
T 3sde_A 26 FVGNLPTDITEEDFKRLFERYGEPSEVFINR----------D-RGFGFIRLESRTLAEIAKAELDGTILK-SRPLRIRFA 93 (261)
T ss_dssp EEESCCTTCCHHHHHHHTGGGCCCSEEEEET----------T-TTEEEEECSSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEECCCCCCCHHHHHHHHHhcCCEEEEEEeC----------C-CcEEEEEECCHHHHHHHHHHcCCcEEC-CceeEeeec
Confidence 48899999999986 55 999999988 5 799999999999999999999999999 999999887
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+. +.+|+|.|||.++|+++|.++|+++|
T Consensus 94 ~~--------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G 121 (261)
T 3sde_A 94 TH--------------------------------------------GAALTVKNLSPVVSNELLEQAFSQFG 121 (261)
T ss_dssp CC--------------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred cc--------------------------------------------CCcccccCCCCCCCHHHHHHHHHhcC
Confidence 52 35799999999999999999999987
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.36 E-value=1.3e-12 Score=101.96 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=80.5
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEee
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~~ 138 (211)
|.|||..++.+.| |. .|..|++++. ..++.+ ..+|+|||+|.+.++|+.|+..|+|..+++| .++.+.+
T Consensus 8 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~ 84 (175)
T 3nmr_A 8 VGQVPRTWSEKDLRELFEQYGAVYEINVLRD--RSQNPP-QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP 84 (175)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEEE--CSSSSC-EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEec--CCCCCC-CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc
Confidence 7899999999986 44 9999999982 222111 1368999999999999999999999988733 5555655
Q ss_pred cCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 139 SKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 139 SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
++..... ..++.+|||.|||.++|+++|.++|+++|
T Consensus 85 ~~~~~~~-------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G 120 (175)
T 3nmr_A 85 ADSEKNN-------------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFG 120 (175)
T ss_dssp CGGGCCS-------------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred ccccccc-------------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCC
Confidence 4432211 12356899999999999999999999987
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.36 E-value=7.4e-13 Score=103.13 Aligned_cols=99 Identities=10% Similarity=0.079 Sum_probs=81.5
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|||..++.+.| |. .|..|++++ +..+| ..+|.|||+|.+.++|+.|+.. +..|. |+.|.|.++.
T Consensus 8 v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~~~--~~~~~-g~~i~v~~~~ 79 (167)
T 2cjk_A 8 IGGLNWDTTEDNLREYFGKYGTVTDLKIMK--DPATG---RSRGFGFLSFEKPSSVDEVVKT--QHILD-GKVIDPKRAI 79 (167)
T ss_dssp ECSCCTTCCHHHHHHHHTTTCCEEEEECCC--CTTTS---SCCSCEEEEESSTHHHHHHHHS--CCEET-TEECCCEECC
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEE--CCCCC---CccceEEEEEccHHHHHHHHhc--ccccC-CeEccccccc
Confidence 7899999999986 55 899999998 44444 4579999999999999999994 67787 9999988765
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..... .++.+|++.|||.++|+++|.++|+++|
T Consensus 80 ~~~~~--------------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G 112 (167)
T 2cjk_A 80 PRDEQ--------------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWG 112 (167)
T ss_dssp CHHHH--------------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTS
T ss_pred chhhc--------------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCc
Confidence 43221 1246899999999999999999999987
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=2e-12 Score=101.83 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=77.9
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..+.+..+..+ ..+|+|||+|.+.++|+.|+. |+|..|. |++|+|.++
T Consensus 17 ~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~-l~g~~~~-g~~l~v~~~ 88 (175)
T 1fje_B 17 FIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG------TNRKFGYVDFESAEDLEKALE-LTGLKVF-GNEIKLEKP 88 (175)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE------TTTTEEEEEESSHHHHHHHHH-GGGEEET-TEEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCC------ccccEEEEEECCHHHHHHHHh-cCCCEeC-CeEEEEecC
Confidence 38999999999975 44 2222111111011 357999999999999999995 9999999 999999988
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..... ...++.+|++.|||.++|+++|.++|+++|
T Consensus 89 ~~~~~~------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g 124 (175)
T 1fje_B 89 KGRDSK------------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDAL 124 (175)
T ss_dssp CCSSCS------------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCS
T ss_pred CCcccc------------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 764321 112467999999999999999999999876
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=2.9e-12 Score=108.91 Aligned_cols=105 Identities=18% Similarity=0.128 Sum_probs=87.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ +..+| ..+|.|||+|.+...|+.|+..|+|..|. |++|.|.++
T Consensus 99 ~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~i~v~~a 172 (284)
T 3smz_A 99 CVANLPPSLTQQQFEELVRPFGSLERCFLVY--SERTG---QSKGYGFAEYMKKDSAARAKSDLLGKPLG-PRTLYVHWT 172 (284)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe--eCCCC---ccceEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEEEEC
Confidence 48999999999986 55 899999988 33333 34689999999999999999999999999 999999998
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCC-CHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDI-TEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~-tee~L~~lf~~~G 211 (211)
+...... -..++.+|+|.|||.++ ||++|.++|+++|
T Consensus 173 ~~~~~~~-----------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 173 DAGQLTP-----------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp CGGGCCT-----------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred CCCCCCc-----------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 7644321 01346789999999996 9999999999987
No 18
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.36 E-value=5.4e-13 Score=101.18 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=60.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
-|.|||..++.+.| |. .|+.|++++..++ .+|+|||+|.+.++|++||+.|+|..|. |++|+|.++
T Consensus 9 fV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~-------~kg~afV~f~~~~~A~~Ai~~l~~~~~~-g~~i~V~~a 80 (115)
T 4f25_A 9 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRF 80 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-------EEEEEEEEESCHHHHHHHHHHHTTCEET-TEECEEEES
T ss_pred EECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC-------CCceEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEEC
Confidence 38899999999985 55 9999999983221 3699999999999999999999999999 999999998
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHH
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQ 202 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~ 202 (211)
+...... ... ..-......||+-|||+++||+.
T Consensus 81 ~~~~~~~-------------------------~~~-----~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKERE-------------------------AEL-----GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------------------------------------
T ss_pred CCccccc-------------------------ccc-----ccccCCCCceEeCCCCCCccccc
Confidence 7644321 000 00011234699999999999874
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.34 E-value=2.8e-12 Score=109.34 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=83.2
Q ss_pred cCCCCCCCccccc------cc-cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPPAFEFERS------YN-SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~~i~~d~L------Fn-nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|.|||..++.+.| |. .|..|++++...+ ..+|.|||+|.+..+|+.|+..|+|..|. |++|.|.++
T Consensus 122 v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 194 (292)
T 2ghp_A 122 MTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFN------TSRRFAYIDVTSKEDARYCVEKLNGLKIE-GYTLVTKVS 194 (292)
T ss_dssp EECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------CCEEEEECSSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCC------CcceEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEEEEC
Confidence 8899999999886 34 8999999873322 34799999999999999999999999999 999999998
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCC-CCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPD-ITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~-~tee~L~~lf~~~G 211 (211)
+...... |. .....++.+|||.|||.+ +|+++|.++|+++|
T Consensus 195 ~~~~~~~-----------------------~~--------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 195 NPLEKSK-----------------------RT--------DSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp CCC----------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred CCCcccc-----------------------cc--------cccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 7544321 00 012356789999999999 99999999999987
No 20
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.29 E-value=5.3e-12 Score=100.28 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=69.9
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCC-eEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEe
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEG-CCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVA 137 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g-~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~ 137 (211)
|.||+..++.|.| |+ .|.+|++++ ..+| +|||+|.|..+|+.|++.|+|..|+ | ++|+|.
T Consensus 33 V~NL~~~vte~~L~~lFs~yG~V~~V~i~~----------~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~-g~~~~LrI~ 101 (130)
T 3zzy_A 33 VENLFYPVTLDVLHQIFSKFGTVLKIITFT----------KNNQFQALLQYADPVSAQHAKLSLDGQNIY-NACCTLRID 101 (130)
T ss_dssp EESCCSCCCHHHHHHHHTTSSCEEEEEEEE----------ETTEEEEEEEESCHHHHHHHHHHHTTCEEE-TTEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHhCcCCEEEEEEEc----------CCCCcEEEEEECCHHHHHHHHHHcCCCeec-CCCcEEEEE
Confidence 8999999999985 66 999999988 3355 4999999999999999999999999 8 999999
Q ss_pred ecCCcccccCCCCccCCCCCCcccccccCcc
Q psy17775 138 YSKQVFLSDVSHPYELPDGSESFKDFTGSRK 168 (211)
Q Consensus 138 ~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~ 168 (211)
|||...+.. .. .....+||++..+
T Consensus 102 ~ak~~~l~v-----~~--n~~~srDyt~~~l 125 (130)
T 3zzy_A 102 FSKLTSLNV-----KY--NNDKSRDYTRPDL 125 (130)
T ss_dssp ECSCSSCCC-----CC--CSSSEEETTCTTC
T ss_pred ecCCCceeE-----Ee--cCCCcccCCCCCC
Confidence 999988763 11 1234689987643
No 21
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.27 E-value=2e-11 Score=103.64 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=78.9
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
.|.|||..++.+.| |. -|+.|++-+ .+|+|||+|.+.++|+.|+..|+|..|. |++|.|.++.
T Consensus 26 ~V~nLp~~~te~~l~~~F~~~Gi~~~~~~~-----------~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~i~v~~~~ 93 (284)
T 3smz_A 26 LIRGLPGDVTNQEVHDLLSDYELKYCFVDK-----------YKGTAFVTLLNGEQAEAAINAFHQSRLR-ERELSVQLQP 93 (284)
T ss_dssp EEECCCTTCCHHHHHHHTTTSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCEEEEEec-----------CCCEEEEEeCCHHHHHHHHHHcCCCeeC-CeEEEEEecC
Confidence 48899999999986 55 588888855 4799999999999999999999999999 9999997532
Q ss_pred CcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 141 QVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 141 ~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..+|+|.|||.++|+++|.++|+++|
T Consensus 94 --------------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G 120 (284)
T 3smz_A 94 --------------------------------------------TDALLCVANLPPSLTQQQFEELVRPFG 120 (284)
T ss_dssp --------------------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred --------------------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcC
Confidence 235899999999999999999999987
No 22
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=1.7e-11 Score=96.24 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=70.0
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCC-eEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEe
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEG-CCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVA 137 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g-~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~ 137 (211)
|.||+..++.|.| |+ .|.+|++++ . .| +|||+|.|..+|+.|++.|+|..|+ | .+|+|.
T Consensus 30 V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~----------~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~-g~~~~l~V~ 97 (124)
T 2e5i_A 30 IQNPLYPITVDVLYTVCNPVGKVQRIVIFK----------R-NGIQAMVEFESVLCAQKAKAALNGADIY-AGCCTLKIE 97 (124)
T ss_dssp EESCCSCCCHHHHHHHHTTTSCEEEEEEEE----------S-SSEEEEEEESSHHHHHHHHHHHTTCCCB-TTBSEEEEE
T ss_pred EcCcCCCCCHHHHHHHHHhcCCEEEEEEEe----------C-CCCEEEEEECCHHHHHHHHHHhCCCEec-CCCeEEEEE
Confidence 6899999999985 66 999999987 3 48 6999999999999999999999999 7 599999
Q ss_pred ecCCcccccCCCCccCCCCCCcccccccCccc
Q psy17775 138 YSKQVFLSDVSHPYELPDGSESFKDFTGSRKN 169 (211)
Q Consensus 138 ~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~n 169 (211)
|||...+.. ... ....+||++..+.
T Consensus 98 ~Ak~~~l~v-----~~n--~~~srDyt~~~l~ 122 (124)
T 2e5i_A 98 YARPTRLNV-----IRN--DNDSWDYTKPYLG 122 (124)
T ss_dssp CCSCSCCCC-----SSC--SSSEEESSCCCCC
T ss_pred EecCCccee-----ecC--CCCCCCCCCCCCC
Confidence 999988752 112 2457899887553
No 23
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.22 E-value=1.9e-11 Score=104.20 Aligned_cols=92 Identities=11% Similarity=0.136 Sum_probs=80.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++..++ .+|+|||+|.+.++|+.|+. |+|..|. |++|.|.++
T Consensus 45 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-------~~g~afV~f~~~~~A~~A~~-~~~~~~~-g~~i~v~~~ 115 (292)
T 2ghp_A 45 LVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-------NFRFARIEFARYDGALAAIT-KTHKVVG-QNEIIVSHL 115 (292)
T ss_dssp EEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-------SSEEEEEEESSHHHHHHHHT-TTTCEET-TEECEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-------CcEEEEEEECCHHHHHHHHH-hCCcEeC-CcEEEEEEC
Confidence 48999999999986 55 9999999984333 36999999999999999995 9999999 999999864
Q ss_pred CCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 140 KQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 140 K~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
++.+|+|.|||.++|+++|.++|+++|
T Consensus 116 ---------------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G 142 (292)
T 2ghp_A 116 ---------------------------------------------TECTLWMTNFPPSYTQRNIRDLLQDIN 142 (292)
T ss_dssp ---------------------------------------------CSCEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred ---------------------------------------------CCCEEEEECCCCCCCHHHHHHHHHHhC
Confidence 136899999999999999999999987
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.18 E-value=2.4e-11 Score=90.32 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=62.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ ++.+| ..+|+|||+|.+.++|++|++.|+|..|. |++|+|.+|
T Consensus 23 fV~nLp~~~te~~L~~~F~~~G~I~~v~i~~--d~~tg---~~kG~afV~f~~~~~A~~Ai~~lng~~~~-gr~l~V~~A 96 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSSIGEVESAKLIR--DKVAG---HSLGYGFVNYVTAKDAERAINTLNGLRLQ-SKTIKVSYA 96 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEEEE--CSSSC---CEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEeEeee--cCCCC---cccccEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEEe
Confidence 48999999999986 55 999999998 55555 45799999999999999999999999999 999999999
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
|.
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 84
No 25
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.17 E-value=5.3e-11 Score=98.01 Aligned_cols=87 Identities=15% Similarity=0.118 Sum_probs=71.2
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEee
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~~ 138 (211)
|.||+..++.|.| |+ .|.+|+++.| .++|+|||+|.|..+|+.|++.|+|..|+ | ++|+|.|
T Consensus 51 VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---------~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-g~g~~L~V~~ 120 (164)
T 1sjr_A 51 VENLFYPVTLDVLHQIFSKFGTVLKIITFTK---------NNQFQALLQYADPVSAQHAKLSLDGQNIY-NACCTLRIDF 120 (164)
T ss_dssp ECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---------SSCEEEEEEESCHHHHHHHHHHSTTBCSS-SSCSCEEEEE
T ss_pred EeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---------CCCCEEEEEECCHHHHHHHHHHhCCCEec-CCCcEEEEEE
Confidence 7899999999986 66 9999999862 34689999999999999999999999999 6 9999999
Q ss_pred cCCcccccCCCCccCCCCCCcccccccCcccc
Q psy17775 139 SKQVFLSDVSHPYELPDGSESFKDFTGSRKNR 170 (211)
Q Consensus 139 SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nR 170 (211)
||...+.. .. .....+||++..+.+
T Consensus 121 Ak~~~l~v-----k~--nn~rsrDyt~p~lp~ 145 (164)
T 1sjr_A 121 SKLTSLNV-----KY--NNDKSRDYTRPDLPS 145 (164)
T ss_dssp CSSSSCCC-----CC--CSSSEEESSCSCCCC
T ss_pred ecCCcccc-----cc--cCCCCccccCCCCCC
Confidence 99987652 11 123467888766544
No 26
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.15 E-value=3.4e-11 Score=91.59 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=60.1
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCce--ecCCceeEEee
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTL--LCNGKRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~--Lf~Gk~L~V~~ 138 (211)
|.|||..++.+.| |. .|..|++++ . +|+|||+|.|.++|+.||+.|+|.. |. |++|.|.|
T Consensus 26 V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----------~-kg~AFVef~~~~~A~~Av~~ln~~~~~i~-Gr~i~V~~ 93 (100)
T 3r27_A 26 IRGLIDGVVEADLVEALQEFGPISYVVVMP----------K-KRQALVEFEDVLGACNAVNYAADNQIYIA-GHPAFVNY 93 (100)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEET----------T-TTEEEEEESSHHHHHHHHHHHHHSCEEET-TEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHhccCCEEEEEEEc----------C-CCEEEEEECCHHHHHHHHHHhcCCCceeC-CcEEEEEe
Confidence 8899999999985 55 999999998 5 7999999999999999999999976 66 99999999
Q ss_pred cCCccc
Q psy17775 139 SKQVFL 144 (211)
Q Consensus 139 SK~~~i 144 (211)
||++.|
T Consensus 94 S~~k~l 99 (100)
T 3r27_A 94 STSQKI 99 (100)
T ss_dssp CSCSCC
T ss_pred cccccc
Confidence 999876
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=87.46 Aligned_cols=72 Identities=11% Similarity=-0.024 Sum_probs=63.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
-|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|+.||+.|||..|. |++|+|.++
T Consensus 10 fV~nL~~~~te~~L~~~F~~~G~i~~v~i~~--d~~tg---~~rG~aFV~f~~~~~A~~Ai~~lng~~~~-gr~i~V~~a 83 (110)
T 3s8s_A 10 TFARLNDNVRETFLKDMCRKYGEVEEVEILL--HPRTR---KHLGLARVLFTSTRGAKETVKNLHLTSVM-GNIIHAQLD 83 (110)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeeEEEEEE--CCCCC---ceeeEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEC
Confidence 38999999999986 66 999999998 44445 45799999999999999999999999999 999999998
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
+...
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7544
No 28
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2.8e-10 Score=81.90 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=60.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.+.|+.|+..|+|..|. |++|+|.+|
T Consensus 20 ~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 93 (94)
T 2e5h_A 20 YVSNLPFSLTNNDLYRIFSKYGKVVKVTIMK--DKDTR---KSKGVAFILFLDKDSAQNCTRAINNKQLF-GRVIKASIA 93 (94)
T ss_dssp EEESCCTTSCHHHHHHHTTTTSCEEEEEECC--CSSSC---CCTTCEEEEESCHHHHHHHHHHTTTEEET-TEEEEEEEC
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeEEEEEEe--CCCCC---CcccEEEEEECCHHHHHHHHHHcCCCeeC-CcEEEEEec
Confidence 48999999999985 66 899999988 33333 44799999999999999999999999999 999999998
Q ss_pred C
Q psy17775 140 K 140 (211)
Q Consensus 140 K 140 (211)
|
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 7
No 29
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.03 E-value=2.3e-10 Score=80.77 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=59.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ +..++ ..+|.|||+|.+.++|+.|++.|+|..|. |++|+|.+|
T Consensus 11 ~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 84 (85)
T 3mdf_A 11 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPL--DYETE---KHRGFAFVEFELAEDAAAAIDNMNESELF-GRTIRVNLA 84 (85)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEECCE--ETTTT---EECSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEECCCCCCCHHHHHHHHhccCCEEEEEEEE--CCCCC---ccccEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEc
Confidence 38999999999875 55 899999987 33333 45799999999999999999999999999 999999998
Q ss_pred C
Q psy17775 140 K 140 (211)
Q Consensus 140 K 140 (211)
|
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 7
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=7.4e-10 Score=80.57 Aligned_cols=74 Identities=14% Similarity=0.026 Sum_probs=63.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 85 (99)
T 1whw_A 12 FVRNLSYTSSEEDLEKLFSAYGPLSELHYPI--DSLTK---KPKGFAFVTFMFPEHAVKAYAEVDGQVFQ-GRMLHVLPS 85 (99)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEECCC--CTTTC---CCCSEEEEEESSHHHHHHHHHHTTTEESS-SCEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe--cCCCC---CcCeEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEc
Confidence 48999999999985 55 899999988 33333 45799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=7.5e-10 Score=79.78 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=63.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.+.|+.|+..|+|..|. |++|+|.++
T Consensus 9 ~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 82 (95)
T 2dnz_A 9 YVGSLHFNITEDMLRGIFEPFGKIDNIVLMK--DSDTG---RSKGYGFITFSDSECARRALEQLNGFELA-GRPMRVGHV 82 (95)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEEEC--CSSSC---CCCSEEEEEESCHHHHHHHHHHHTTCCSS-SSCCEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEEee--cCCCC---ceeeEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEEc
Confidence 48899999999875 55 999999998 33333 45799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 886554
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.00 E-value=5.6e-10 Score=78.39 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=60.2
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|||..++.+.| |. .|..|++++ +.-++ ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.+++
T Consensus 6 V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~--~~~~~---~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~ 79 (83)
T 3md1_A 6 VGDLNVNVDDETLRNAFKDFPSYLSGHVMW--DMQTG---SSRGYGFVSFTSQDDAQNAMDSMQGQDLN-GRPLRINWAA 79 (83)
T ss_dssp EECCCTTCCHHHHHHHHTTSTTEEEEEEEE--CTTTC---CEEEEEEEEESCHHHHHHHHHHHTTCEET-TEECEEEECC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEE--cCCCC---CccceEEEEECCHHHHHHHHHHhcCCeeC-CcEEEEEecC
Confidence 6799999998875 55 899999998 32233 34799999999999999999999999999 9999999998
Q ss_pred Cc
Q psy17775 141 QV 142 (211)
Q Consensus 141 ~~ 142 (211)
..
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.00 E-value=4.6e-10 Score=79.51 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=59.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++ +..++ ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 10 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 83 (87)
T 3bs9_A 10 FVGDLSPEITTAAIAAAFAPFGRISDARVVK--DMATG---KSKGYGFVSFFNKWDAENAIQQMGGQWLG-GRQIRTNWA 83 (87)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe--cCCCC---ccceEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEec
Confidence 38899999999885 55 999999998 32233 34799999999999999999999999999 999999999
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
+..
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 863
No 34
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=2.9e-10 Score=86.47 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=56.0
Q ss_pred cCCCCCCCcccc-------ccc----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 67 YYGAPPAFEFER-------SYN----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 67 v~nl~~~i~~d~-------LFn----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
|+|||++++.+. ||. .|+.| - . |+|||+|.|.++|++|++.|+|..|| |++|+
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---t----------g--G~AfV~F~~~esA~~A~~~l~G~~l~-gr~i~ 77 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---T----------G--CSAILRFINQDSAERAQKRMENEDVF-GNRII 77 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---C----------T--TCEEEEESSHHHHHHHHHHHTTCCSS-SSCCE
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---e----------c--CEEEEEECCHHHHHHHHHHhcCCccC-CceEE
Confidence 899999999886 565 45555 3 2 99999999999999999999999999 99999
Q ss_pred EeecCCcccc
Q psy17775 136 VAYSKQVFLS 145 (211)
Q Consensus 136 V~~SK~~~i~ 145 (211)
|.|+|..++.
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999998876
No 35
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=8.4e-10 Score=83.02 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=60.6
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhC--CceecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLS--KTLLCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~--g~~Lf~Gk~L~V~ 137 (211)
-|.||+..++.+.| |. .|+.|++++ . +|+|||+|.|.++|+.|+..|+ +..|. |++|.|.
T Consensus 19 ~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~----------~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~-Gr~l~V~ 86 (101)
T 2cq1_A 19 HIRKLPGEVTETEVIALGLPFGKVTNILMLK----------G-KNQAFLELATEEAAITMVNYYSAVTPHLR-NQPIYIQ 86 (101)
T ss_dssp EEESCCTTCCHHHHHHTTTTTSCEEEEEEET----------T-TTEEEEEESSHHHHHHHHHHHHHSCCEET-TEECEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----------C-CCEEEEEECCHHHHHHHHHHhccCCceEC-CcEEEEE
Confidence 38899999999874 66 999999998 5 7999999999999999999874 67788 9999999
Q ss_pred ecCCcccc
Q psy17775 138 YSKQVFLS 145 (211)
Q Consensus 138 ~SK~~~i~ 145 (211)
||+...+.
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99988876
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.99 E-value=7.9e-10 Score=80.31 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=63.1
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++.+.| |. .|..|++++ +..+| ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.+++
T Consensus 7 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a~ 80 (96)
T 2x1f_A 7 LGSIPYDQTEEQILDLCSNVGPVINLKMMF--DPQTG---RSKGYAFIEFRDLESSASAVRNLNGYQLG-SRFLKCGYSS 80 (96)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEECCB--CTTTC---CBCSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEECS
T ss_pred EECCCCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCC---ccceEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEEcC
Confidence 7899999998886 54 899999998 33333 44799999999999999999999999999 9999999999
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
.....
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87664
No 37
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.98 E-value=4.5e-10 Score=83.54 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=61.3
Q ss_pred CccCCCCCCCccccc---cc-----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCc----eecCCc
Q psy17775 65 DDYYGAPPAFEFERS---YN-----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKT----LLCNGK 132 (211)
Q Consensus 65 ~~v~nl~~~i~~d~L---Fn-----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~----~Lf~Gk 132 (211)
..|.||+..++.|.| |. .|..|++++ ++.+| ..+|.|||+|.+.++|+.||+.|+|. .|. |+
T Consensus 12 lfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~--d~~tg---~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~-Gr 85 (95)
T 2lkz_A 12 IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIK--DKQTQ---QNRGFAFVQLSSAMDASQLLQILQSLHPPLKID-GK 85 (95)
T ss_dssp EEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCC--CSSSS---SCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET-TE
T ss_pred EEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEe--cCCCC---CCceEeEEEECCHHHHHHHHHHhcCCCCCceEC-CE
Confidence 359999999999986 66 577899988 66566 56899999999999999999999996 466 99
Q ss_pred eeEEeecCC
Q psy17775 133 RLAVAYSKQ 141 (211)
Q Consensus 133 ~L~V~~SK~ 141 (211)
+|.|.|||.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=7.9e-10 Score=81.13 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=63.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|+|||+|.+.+.|+.||..|+|..|. |++|+|.++
T Consensus 19 ~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 92 (103)
T 2cq0_A 19 RVTNLSEDTRETDLQELFRPFGSISRIYLAK--DKTTG---QSKGFAFISFHRREDAARAIAGVSGFGYD-HLILNVEWA 92 (103)
T ss_dssp EEESCCTTCCHHHHHTTSTTTCCEEEEEEEE--CSSSC---SEEEEEEEEESSHHHHHHHHHHTTTCEET-TEECEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCeEEEEEee--cCCCC---ceeeEEEEEECCHHHHHHHHHHcCCCeeC-CcEEEEEEC
Confidence 38999999999875 66 999999998 33333 34689999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+...-.
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 39
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=5.5e-10 Score=85.49 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=61.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCC--ceecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSK--TLLCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g--~~Lf~Gk~L~V~ 137 (211)
-|.||+..++.+.| |. .|..|++++ . +|+|||+|.|.++|+.||+.|++ ..|. |++|.|.
T Consensus 20 fV~nLp~~vte~dL~~lF~~fG~V~~v~i~~----------~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~-Gr~l~V~ 87 (105)
T 1sjq_A 20 HIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----------G-KNQAFIEMNTEEAANTMVNYYTSVTPVLR-GQPIYIQ 87 (105)
T ss_dssp EECSCCTTSCHHHHHHHHHHHCCEEEEEEET----------T-TTEEEEEESSHHHHHHHHHHHTTSCCEET-TEECCBC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc----------C-CCEEEEEECCHHHHHHHHHHhccCCceEC-CEEEEEE
Confidence 38999999999885 66 999999999 5 79999999999999999999874 6788 9999999
Q ss_pred ecCCccccc
Q psy17775 138 YSKQVFLSD 146 (211)
Q Consensus 138 ~SK~~~i~~ 146 (211)
+|+...+..
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 999988763
No 40
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.97 E-value=5.7e-10 Score=80.42 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=60.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|+.|++++..++ ..+|.|||+|.+.+.|+.|+..|+|..|. |++|+|.++
T Consensus 20 ~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 92 (95)
T 2ywk_A 20 FVGNLEARVREEILYELFLQAGPLTKVTICKDREG------KPKSFGFVCFKHPESVSYAIALLNGIRLY-GRPINVSGP 92 (95)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTS------CEEEEEEEEESSTHHHHHHHHHHTTCEET-TEECEEECC
T ss_pred EEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC------CCceEEEEEECCHHHHHHHHHHhCCCEEC-CCEEEEEEc
Confidence 38999999999885 55 9999999983222 34799999999999999999999999999 999999999
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 41
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.97 E-value=2.6e-10 Score=85.33 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=59.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ ++ ..+|+|||+|.+..+|+.|+..|+|..|. |+.|+|.++
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~--~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 82 (115)
T 3lqv_A 12 YIRNLPYKITAEEMYDIFGKYGPIRQIRVGN--TP------ETRGTAYVVYEDIFDAKNAVDHLSGFNVS-NRYLVVLYY 82 (115)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEEEC--ST------TTTTCEEEEESSHHHHHHHHHHHTTCBSS-SCBCEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEee--CC------CCCcEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEEe
Confidence 38999999999986 55 899999987 22 33799999999999999999999999999 999999998
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
+...
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7533
No 42
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=6e-10 Score=81.76 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=62.9
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 17 ~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a 90 (103)
T 2dnm_A 17 KVDNLTYRTSPDSLRRVFEKYGRVGDVYIPR--EPHTK---APRGFAFVRFHDRRDAQDAEAAMDGAELD-GRELRVQVA 90 (103)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEECCB--CSSSC---SBCSCEEEEESSSSHHHHHHHHHSSCCBT-TBCCEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCC---CCCeEEEEEECCHHHHHHHHHHcCCCEEC-CcEEEEEEC
Confidence 48999999999986 55 899999988 33333 45799999999999999999999999999 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+...-
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87554
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.97 E-value=4.3e-10 Score=82.02 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=60.2
Q ss_pred ccCCCCCCCccccc---cc----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhC-CceecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLS-KTLLCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~-g~~Lf~Gk~L~V~ 137 (211)
.|.|||..++.+.| |. .|..|++++ ++.+| ..+|.|||+|.+.++|++||+.|+ +..|. |++|+|.
T Consensus 5 ~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~--d~~t~---~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~-gr~i~V~ 78 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQSHGVQAREVRLMR--NKSSG---QSRGFAFVEFSHLQDATRWMEANQHSLNIL-GQKVSMH 78 (91)
T ss_dssp EEETCCSSCCHHHHHHHHHHHTCCCSBCCSSS--CSSSC---CCSSEEEEECSSHHHHHHHHHTTTTEEEET-TEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEe--cCCCC---CcCceEEEEecCHHHHHHHHHhcCCCeEEC-CEEEEEE
Confidence 37899999999986 54 699999998 55555 557999999999999999999885 55677 9999999
Q ss_pred ecCCcc
Q psy17775 138 YSKQVF 143 (211)
Q Consensus 138 ~SK~~~ 143 (211)
||+...
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 997654
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=6.8e-10 Score=81.15 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=63.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.+.|+.|+..|+|..|. |++|+|.++
T Consensus 16 ~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a 89 (102)
T 2cqb_A 16 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPL--DYETE---KHRGFAFVEFELAEDAAAAIDNMNESELF-GRTIRVNLA 89 (102)
T ss_dssp EEESCCSSCCHHHHHHHHTTTSCCCCEECCC--CSSSC---CCSSEEEECCSSHHHHHHHHHHHTTEEET-TEEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHhhccCCEEEEEEEe--cCCCC---CcceEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEeC
Confidence 48999999999986 55 899999988 33333 45799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887654
No 45
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=5.5e-10 Score=84.36 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=60.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCce--ecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTL--LCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~--Lf~Gk~L~V~ 137 (211)
-|.||+..++.+.| |. .|..|++++ . +|+|||+|.|..+|+.|+..|++.. |. |++|.|.
T Consensus 19 ~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----------~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~-Gr~l~V~ 86 (104)
T 1wex_A 19 HVRGLCESVVEADLVEALEKFGTICYVMMMP----------F-KRQALVEFENIDSAKECVTFAADVPVYIA-GQQAFFN 86 (104)
T ss_dssp EEESCCSSCCHHHHHHHHTTTSCEEEEEEET----------T-TTEEEEEESSHHHHHHHHHHHHHSCCBSS-SSBCEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----------C-CCEEEEEECCHHHHHHHHHHhccCCceEC-CEEEEEE
Confidence 48999999999885 55 999999998 5 7999999999999999999997654 77 9999999
Q ss_pred ecCCcccc
Q psy17775 138 YSKQVFLS 145 (211)
Q Consensus 138 ~SK~~~i~ 145 (211)
||+...+.
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99988775
No 46
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=4.9e-10 Score=84.89 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=58.4
Q ss_pred cCCCCC-CCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCce--ecCCceeEEe
Q psy17775 67 YYGAPP-AFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTL--LCNGKRLAVA 137 (211)
Q Consensus 67 v~nl~~-~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~--Lf~Gk~L~V~ 137 (211)
|.|||. .++.+.| |. .|..|++++ . +|+|||+|+|.++|+.||+.|+|.. |. |++|.|.
T Consensus 20 V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----------~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~-Gr~l~V~ 87 (102)
T 1x4d_A 20 IMDFQRGKNLRYQLLQLVEPFGVISNHLILN----------K-INEAFIEMATTEDAQAAVDYYTTTPALVF-GKPVRVH 87 (102)
T ss_dssp EESCCCSSSHHHHHHTTTGGGSCEEEEEECS----------S-SSCEEEEESSHHHHHHHHHHHHHSCCEET-TEECEEE
T ss_pred EeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----------C-CCEEEEEECCHHHHHHHHHHHcCCCceEC-CcEEEEE
Confidence 889999 9998874 66 999999998 5 6999999999999999999998754 88 9999999
Q ss_pred ecCC-cccc
Q psy17775 138 YSKQ-VFLS 145 (211)
Q Consensus 138 ~SK~-~~i~ 145 (211)
+|+. ..+.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x4d_A 88 LSQKYKRIK 96 (102)
T ss_dssp EECCCTTSS
T ss_pred ECCCCCCCC
Confidence 9984 4443
No 47
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.96 E-value=6.6e-10 Score=83.41 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=59.6
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ ++.+| ..+|+|||+|.+.+.|+.|++.|+|..|. |++|+|.++
T Consensus 44 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~--~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a 117 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFLPFGNVISAKVFI--DKQTS---LSKCFGFVSFDNPDSAQVAIKAMNGFQVG-TKRLKVQLK 117 (118)
T ss_dssp EEECSCTTCCHHHHHHHTTTSCEEEEEEECC--CSSSS---CCCCEEEEEEESSHHHHHHHHHCCCCEET-TEECCEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCC---CcCcEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEec
Confidence 38999999999985 66 899999997 33333 45799999999999999999999999999 999999998
Q ss_pred C
Q psy17775 140 K 140 (211)
Q Consensus 140 K 140 (211)
|
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 6
No 48
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=8.3e-10 Score=86.34 Aligned_cols=71 Identities=11% Similarity=0.013 Sum_probs=61.7
Q ss_pred ccCCCCCCCcccc-------ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 66 DYYGAPPAFEFER-------SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 66 ~v~nl~~~i~~d~-------LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
.|.||+..++.+. +|+ .|+.|.+.+ . + ..+|+|||+|.+..+|+.||..|+|..|+ |++|+
T Consensus 33 fV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~---~---~~rG~aFV~F~~~~~A~~Ai~~lng~~l~-gr~l~ 103 (127)
T 2a3j_A 33 LITNINPEVPKEKLQALLYALASSQGDILDIVVDL--S---D---DNSGKAYIVFATQESAQAFVEAFQGYPFQ-GNPLV 103 (127)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--C---C---SSCCCEEEEESSHHHHHHHHHHSTTCCCT-TSCCE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--C---C---CcCCEEEEEECCHHHHHHHHHHHCCCEeC-CCEEE
Confidence 4899999999875 577 899998865 2 2 34799999999999999999999999999 99999
Q ss_pred EeecCCcccc
Q psy17775 136 VAYSKQVFLS 145 (211)
Q Consensus 136 V~~SK~~~i~ 145 (211)
|.||+.....
T Consensus 104 V~~a~~~~~~ 113 (127)
T 2a3j_A 104 ITFSETPQSQ 113 (127)
T ss_dssp EEECCCCCHH
T ss_pred EEEccCcchh
Confidence 9999987665
No 49
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=7.7e-10 Score=79.54 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=60.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 19 ~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 92 (95)
T 2cqc_A 19 GVFGLSLYTTERDLREVFSKYGPIADVSIVY--DQQSR---RSRGFAFVYFENVDDAKEAKERANGMELD-GRRIRVSGP 92 (95)
T ss_dssp EEESCCSSCCHHHHHHHHHTTSCEEEEEEEE--CSSSS---SEEEEEEEEESSHHHHHHHHHHHTTEEET-TEEEEEECC
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeeEEEEEE--cCCCC---CcccEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEec
Confidence 48999999999986 55 899999997 32223 34689999999999999999999999999 999999999
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 50
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.95 E-value=9.8e-10 Score=80.22 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=61.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|+.|++++ . +|+|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----------~-kg~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a 86 (99)
T 2cpj_A 19 FVGNLPPDITEEEMRKLFEKYGKAGEVFIHK----------D-KGFGFIRLETRTLAEIAKVELDNMPLR-GKQLRVRFA 86 (99)
T ss_dssp EEESCCTTCCHHHHHHHTSTTCCCSEEEEET----------T-TTEEEEECSSSHHHHHHHHHHTTCCBT-TBCCEEEES
T ss_pred EEeCCCCCCCHHHHHHHHhhcCCeEEEEEec----------C-CCEEEEEECCHHHHHHHHHHhCCCEeC-CceEEEEEc
Confidence 48999999999985 66 899999998 5 799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 986654
No 51
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=1.1e-09 Score=79.95 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=62.5
Q ss_pred ccCCCCCCCccccc---cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCc
Q psy17775 66 DYYGAPPAFEFERS---YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQV 142 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~ 142 (211)
.|.||+..++.+.| |..++.|++++ +..++ ..+|+|||+|.+.+.|+.||..|+|..|. |++|+|.+++..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~~~~~~~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a~~~ 92 (102)
T 2fc8_A 19 FVKGLSEDTTEETLKESFDGSVRARIVT--DRETG---SSKGFGFVDFNSEEDAKAAKEAMEDGEID-GNKVTLDWAKPK 92 (102)
T ss_dssp EEECCCTTCCHHHHHHTSTTCSEEEEEE--CSSSC---SEEEEEEEECSSHHHHHHHHHHHTTCEET-TEECEEEECCCC
T ss_pred EEeCCCCccCHHHHHHHhcCCeEEEEEe--cCCCC---CcCcEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEEecCC
Confidence 48999999999875 77777899988 33333 34699999999999999999999999999 999999999876
Q ss_pred ccc
Q psy17775 143 FLS 145 (211)
Q Consensus 143 ~i~ 145 (211)
...
T Consensus 93 ~~~ 95 (102)
T 2fc8_A 93 GEG 95 (102)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 52
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.94 E-value=1.2e-09 Score=81.71 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=63.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|+|||+|.+.+.|+.||..|+|..|. |++|+|.++
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 92 (115)
T 2dgo_A 19 FVGDLSPEITTEDIKAAFAPFGRISDARVVK--DMATG---KSKGYGFVSFFNKWDAENAIQQMGGQWLG-GRQIRTNWA 92 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHTTTCEET-TEECEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--cCCCC---CcceEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEEc
Confidence 38999999999986 55 999999998 22233 34699999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+...-.
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 876554
No 53
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.1e-09 Score=80.12 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=63.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|+.|++++ +.-++ ..+|+|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 16 ~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 89 (102)
T 1x5s_A 16 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVK--DRETQ---RSRGFGFVTFENIDDAKDAMMAMNGKSVD-GRQIRVDQA 89 (102)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCCCEEEECC--CSSSC---SCCSEEEEECSSHHHHHHHHHHHTTCCTT-SCCCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeEEEEEEe--CCCCC---CcccEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEC
Confidence 48999999999986 55 999999988 33233 35799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 886654
No 54
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.6e-09 Score=79.52 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=62.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++... ..+|+|||+|.+.+.|+.|+..|+|..|. |++|+|.++
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 90 (103)
T 2cqi_A 19 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------SNDPYCFVEFYEHRDAAAALAAMNGRKIL-GKEVKVNWA 90 (103)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------SSCCEEEEEESSHHHHHHHHHHHTTEEET-TEEEEEEEC
T ss_pred EEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------CCCCEEEEEECCHHHHHHHHHHhCCCCcC-CCeEEEEEC
Confidence 48999999999986 55 999999998311 23799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 986543
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=80.12 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=62.9
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++. ++ ..+|+|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a 90 (103)
T 2d9p_A 19 YVKNLDDGIDDERLRKAFSPFGTITSAKVMME----GG---RSKGFGFVCFSSPEEATKAVTEMNGRIVA-TKPLYVALA 90 (103)
T ss_dssp EEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC----SS---SEEEEEEEEESSHHHHHHHHHHHTTCBSS-SSBCEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CC---CcCEEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEEEEe
Confidence 48999999999985 66 9999999982 22 45799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 886654
No 56
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.3e-09 Score=78.68 Aligned_cols=74 Identities=12% Similarity=0.230 Sum_probs=62.8
Q ss_pred ccCCCCCCCccccc---cc---cceEe-eEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLD-KFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rv-K~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.|||..++.+.| |. .|+.| ++++ +..++ ..+|+|||+|.+.+.|+.|+..|+|..|. |++|+|.+
T Consensus 9 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~--~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~ 82 (96)
T 1x5t_A 9 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR--DPDTG---NSKGYAFINFASFDASDAAIEAMNGQYLC-NRPITVSY 82 (96)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCBSSCCEECC--CTTTC---SCCSEEEEEBSSHHHHHHHHHTTTTCEET-TEECEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEE--cCCCC---CcCeEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEE
Confidence 48899999999886 55 88888 8887 33344 45799999999999999999999999999 99999999
Q ss_pred cCCcccc
Q psy17775 139 SKQVFLS 145 (211)
Q Consensus 139 SK~~~i~ 145 (211)
++...-.
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 57
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2.2e-09 Score=78.71 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=62.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++...+ .+|.|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 19 ~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 90 (103)
T 2cq3_A 19 HVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-------SKGFGFVTFENSADADRAREKLHGTVVE-GRKIEVNNA 90 (103)
T ss_dssp EEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-------TCCEEEEEESCHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-------CcEEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEEc
Confidence 48999999999985 55 9999999983221 3799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 987655
No 58
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1.4e-09 Score=79.82 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=63.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +.-++ ..+|+|||+|.+.+.|+.|+..|+|..|. |++|+|.++
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 92 (105)
T 1x5u_A 19 YVGGLDEKVSEPLLWELFLQAGPVVNTHMPK--DRVTG---QHQGYGFVEFLSEEDADYAIKIMDMIKLY-GKPIRVNKA 92 (105)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEECCB--CSSSC---SBCSCEEEEESSHHHHHHHHHHSSSCBCS-SCBCEEEET
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe--cCCCC---cCCcEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEEC
Confidence 48999999999986 44 999999988 33333 45799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 886554
No 59
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1.3e-09 Score=85.06 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=61.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCC--ceecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSK--TLLCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g--~~Lf~Gk~L~V~ 137 (211)
-|.||+..++.+.| |. .|+.|++++ . +|+|||+|.|.++|+.||..|++ ..|. |++|.|.
T Consensus 35 fVgNLp~~vte~dL~~lF~~fG~V~~v~i~~----------~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~-Gr~l~V~ 102 (119)
T 2ad9_A 35 HIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----------G-KNQAFIEMNTEEAANTMVNYYTSVTPVLR-GQPIYIQ 102 (119)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCCCEEEEEG----------G-GTEEEEECSCHHHHHHHHHHHHHHCCCBT-TBCCEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----------C-CCEEEEEECCHHHHHHHHHHhccCCceEC-CeEEEEE
Confidence 38999999999885 65 999999999 5 79999999999999999999985 6788 9999999
Q ss_pred ecCCccccc
Q psy17775 138 YSKQVFLSD 146 (211)
Q Consensus 138 ~SK~~~i~~ 146 (211)
||+...+..
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 999988863
No 60
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=1e-09 Score=77.59 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=57.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-CCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNL-SKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L-~g~~Lf~Gk~L~V~~ 138 (211)
.|.||+..++.+.| |. .|..|++++ . +|+|||+|.+.++|+.|+..| +|..+. |++|+|.+
T Consensus 16 ~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----------~-kg~afV~f~~~~~A~~a~~~l~~~~~~~-g~~l~v~~ 83 (85)
T 2ytc_A 16 YVGGLGDTITETDLRNHFYQFGEIRTITVVQ----------R-QQCAFIQFATRQAAEVAAEKSFNKLIVN-GRRLNVKW 83 (85)
T ss_dssp EEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----------G-GTEEEEEESSHHHHHHHHHTTTTTCEET-TEECCEEE
T ss_pred EEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----------C-CCEEEEEECCHHHHHHHHHHhcCCeeEC-CCEEEEEe
Confidence 38899999999986 44 999999999 5 799999999999999999999 999999 99999999
Q ss_pred cC
Q psy17775 139 SK 140 (211)
Q Consensus 139 SK 140 (211)
+|
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 87
No 61
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=1.7e-09 Score=79.49 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=63.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-CCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNL-SKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L-~g~~Lf~Gk~L~V~~ 138 (211)
.|.|||..++.+.| |. .|+.|++++.. ..++ ..+|+|||+|.+.++|+.||..| +|..|. |++|+|.+
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~---~~~g~afV~f~~~~~a~~A~~~l~~~~~~~-g~~l~v~~ 93 (107)
T 2cph_A 19 LVRNIPFQANQREIRELFSTFGELKTVRLPKKM-TGTG---AHRGFGFVDFITKQDAKKAFNALCHSTHLY-GRRLVLEW 93 (107)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEECCCCC-SSSC---SSCSEEEEEESSHHHHHHHHHHHHTCCBSS-SCBCEEEE
T ss_pred EEeCCCCcCCHHHHHHHHHccCCeEEEEEecCC-CCCC---CcCceEEEEECCHHHHHHHHHHhccCCeEC-CCEEEEEe
Confidence 48999999999986 55 99999998821 2223 45899999999999999999999 999999 99999999
Q ss_pred cCCcccc
Q psy17775 139 SKQVFLS 145 (211)
Q Consensus 139 SK~~~i~ 145 (211)
++.....
T Consensus 94 a~~~~~~ 100 (107)
T 2cph_A 94 ADSEVTV 100 (107)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=2.5e-09 Score=77.93 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=62.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|+.||+ |+|..|. |++|+|.++
T Consensus 14 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~-~~~~~~~-g~~l~V~~a 86 (99)
T 2dgs_A 14 FVGGIPHNCGETELREYFKKFGVVTEVVMIY--DAEKQ---RPRGFGFITFEDEQSVDQAVN-MHFHDIM-GKKVEVKRA 86 (99)
T ss_dssp EEESCCSSCCHHHHHHHHSSSSCEEEEEECC--CTTTC---SCCSEEEEEESSHHHHHHHHH-HCCCBSS-SCBCEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe--CCCCC---CCCceEEEEECCHHHHHHHHH-hCCCEEC-CeEEEEEEC
Confidence 38999999999986 55 999999998 33333 457999999999999999999 9999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876544
No 63
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.91 E-value=9.2e-10 Score=82.63 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=61.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++ +..+| ..+|+|||+|.+.+.|+.|+..|+|..|. |++|+|.++
T Consensus 30 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~F~~~~~A~~Ai~~l~g~~i~-g~~l~V~~a 103 (108)
T 2jrs_A 30 YVGSLHFNITEDMLRGIFEPFGRIESIQLMM--DSETG---RSKGYGFITFSDSECAKKALEQLNGFELA-GRPMKVGHV 103 (108)
T ss_dssp EEECCCSSCCHHHHHHHHTTTSCEEEEEEEE--ETTTT---EEEEEEEEEESCHHHHHHHHHHHTTCCSS-SSCCEEECS
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--cCCCC---ccceEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEEc
Confidence 48999999999986 55 899999997 22233 34699999999999999999999999999 999999999
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
+...
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 64
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.2e-09 Score=80.45 Aligned_cols=71 Identities=17% Similarity=0.073 Sum_probs=61.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++ +.-+| ..+|.|||+|.+.+.|+.|+..|+|..|. |++|+|.++
T Consensus 27 ~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 100 (106)
T 1p27_B 27 FVTGVHEEATEEDIHDKFAEYGEIKNIHLNL--DRRTG---YLKGYTLVEYETYKEAQAAMEGLNGQDLM-GQPISVDWC 100 (106)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEEEEE--CTTTS---SEEEEEEEEESCHHHHHHHHHHHTTCBSS-SSBCEEEES
T ss_pred EEeCCCCCCCHHHHHHHHhccCCeEEEEEEe--cCCCC---ceeeEEEEEECCHHHHHHHHHHhcCCEEC-CcEEEEEee
Confidence 38999999999986 55 999999987 33333 34699999999999999999999999999 999999999
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
+..
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 764
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.6e-09 Score=79.11 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=61.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|+.|++++.. +| ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 21 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 93 (100)
T 2do4_A 21 FISGLPFSCTKEELEEICKAHGTVKDLRLVTNR---AG---KPKGLAYVEYENESQASQAVMKMDGMTIK-ENIIKVAIS 93 (100)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---TS---CEEEEEEEEESSHHHHHHHHHHHTTEESS-SCEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC---CC---CEEeEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEEC
Confidence 48999999999985 55 89999999822 23 44699999999999999999999999999 999999999
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
+...
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 66
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.91 E-value=1.7e-09 Score=80.16 Aligned_cols=71 Identities=11% Similarity=0.010 Sum_probs=61.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..+| ..+|+|||+|.+...|+.|+..|+|..|. |++|+|.++
T Consensus 30 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 103 (110)
T 1oo0_B 30 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL--DRRTG---FSKGYALVEYETHKQALAAKEALNGAEIM-GQTIQVDWC 103 (110)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEECCB--CTTTS---SBCSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe--cCCCC---CcceEEEEEECCHHHHHHHHHHcCCCEEC-CcEEEEEEc
Confidence 48999999999885 55 999999987 33333 34799999999999999999999999999 999999999
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
+..
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 764
No 67
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.91 E-value=6.3e-10 Score=80.25 Aligned_cols=72 Identities=21% Similarity=0.151 Sum_probs=57.8
Q ss_pred cCCCCCCCccccc------cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 67 YYGAPPAFEFERS------YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 67 v~nl~~~i~~d~L------Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
|.||+..++.+.| |. .|..|++++ ++.+| ..+|.|||+|.+.++|+.||+.|+|..|. |++|+|.+
T Consensus 6 V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~--~~~~g---~~kG~afV~f~~~~~a~~Ai~~l~g~~~~-gr~i~V~~ 79 (90)
T 3p5t_L 6 IGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE--NRANG---QSKGFALVGVGSEASSKKLMDLLPKRELH-GQNPVVTP 79 (90)
T ss_dssp EESCCTTCCHHHHHHHHHTTTCCCCCCEEEEE--CTTTC---CEEEEEEECC-CHHHHHHHHHHGGGSCSS-SCCCEECC
T ss_pred EeCCCCCCCHHHHHHHHHHhCCCceEEEEEEe--cCCCC---ccCcEEEEEECCHHHHHHHHHHcCCCeeC-CEEEEEEE
Confidence 7799999998875 44 799999998 44444 45799999999999999999999999999 99999999
Q ss_pred cCCccc
Q psy17775 139 SKQVFL 144 (211)
Q Consensus 139 SK~~~i 144 (211)
++....
T Consensus 80 ~~~~~~ 85 (90)
T 3p5t_L 80 SNKLEH 85 (90)
T ss_dssp C-----
T ss_pred CCCCcc
Confidence 987644
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.91 E-value=1.4e-09 Score=81.49 Aligned_cols=74 Identities=19% Similarity=0.137 Sum_probs=63.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.+.|+.||+.|+|..|. |++|+|.++
T Consensus 29 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 102 (115)
T 2cpz_A 29 FIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI--DKQTN---LSKCFGFVSYDNPVSAQAAIQSMNGFQIG-MKRLKVQLK 102 (115)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCCSEEEEEE--CSSSC---SEEEEEEEECSSHHHHHHHHHHHTTCEET-TEECEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCC---CcCccEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEEc
Confidence 48999999999986 55 899999998 22223 34689999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 876654
No 69
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2e-09 Score=80.05 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=61.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ . +|+|||+|.+.+.|+.||..|+|..|. |++|+|.++
T Consensus 29 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~----------~-~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 96 (109)
T 1x4g_A 29 YCGGIASGLTDQLMRQTFSPFGQIMEIRVFP----------E-KGYSFVRFSTHESAAHAIVSVNGTTIE-GHVVKCYWG 96 (109)
T ss_dssp EEECCSSCCCHHHHHHHHHHHSCEEEEEEET----------T-TTEEEEEESSHHHHHHHHHHHTTCEET-TEECEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC----------C-CCEEEEEECCHHHHHHHHHHcCCCEEC-CcEEEEEec
Confidence 48999999999986 55 999999999 5 799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 886543
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.90 E-value=2e-09 Score=81.67 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=63.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++. . +| ..+|+|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 11 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~-~g---~~~g~afV~F~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 83 (116)
T 2fy1_A 11 FIGGLNRETNEKMLKAVFGKHGPISEVLLIKD--R-TS---KSRGFAFITFENPADAKNAAKDMNGKSLH-GKAIKVEQA 83 (116)
T ss_dssp EEECCTTTCCHHHHHHHHHTSSCCSEEEEECS--T-TT---TCCCEEEEECSSHHHHHHHHHHCSSCBCS-SSBCEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC--C-CC---CcccEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEEC
Confidence 38899999999985 55 8999999983 2 33 45799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 976654
No 71
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.4e-09 Score=79.43 Aligned_cols=70 Identities=19% Similarity=0.108 Sum_probs=60.6
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++.. ++ ..+|.|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 26 ~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a 96 (109)
T 1x4a_A 26 YVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RR------GGPPFAFVEFEDPRDAEDAVYGRDGYDYD-GYRLRVEFP 96 (109)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SS------SSSCCEEEEESCHHHHHHHHHHHTTCEET-TEECEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CC------CCCcEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEEc
Confidence 48999999999985 55 899999866 22 24799999999999999999999999999 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+...-
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87543
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.89 E-value=2.3e-09 Score=83.23 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=61.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|+|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 50 ~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~--d~~tg---~~~G~afV~F~~~~~A~~Ai~~lng~~i~-g~~l~V~~a 123 (129)
T 2kxn_B 50 GVFGLSLYTTERDLREVFSKYGPIADVSIVY--DQQSR---RSRGFAFVYFENVDDAKEAKERANGMELD-GRRIRVDFS 123 (129)
T ss_dssp CEETCTTSCCHHHHHHHHTTTSCEEEEEEEC--CSSSS---CCCCEEEEEESCHHHHHHHHHHHTTCCSS-SSCCEESCC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe--cCCCC---ccceEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEEe
Confidence 48999999999986 55 899999997 33333 45799999999999999999999999999 999999999
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
+..
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 864
No 73
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.89 E-value=1.6e-09 Score=79.85 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=59.5
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++.. +| ..+|+|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 33 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 105 (107)
T 3ulh_A 33 LVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR---SG---RSLGTADVHFERKADALKAMKQYNGVPLD-GRPMNIQLV 105 (107)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TS---CEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CC---CcceEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEEEEe
Confidence 48999999999875 55 89999999832 33 34799999999999999999999999999 999999998
Q ss_pred C
Q psy17775 140 K 140 (211)
Q Consensus 140 K 140 (211)
+
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 74
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.89 E-value=1.6e-09 Score=79.01 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=59.2
Q ss_pred ccCCCCCCCccccc---cc---cceE--------eeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVL--------DKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG 131 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~r--------vK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G 131 (211)
-|.||+..++.+.| |. .|.. |++++ ++.+| ..+|.|||+|.+.++|+.|++.|+|..|. |
T Consensus 17 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~--~~~~g---~~~G~afV~f~~~~~a~~Ai~~l~g~~~~-g 90 (99)
T 2la6_A 17 FVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT--DRETG---KLKGEATVSFDDPPSAKAAIDWFDGKEFS-G 90 (99)
T ss_dssp EEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEE--CTTTC---SEEEEEEEEBSSHHHHHHHHHHHTTCBSS-S
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEe--cCCCC---CeeeEEEEEECCHHHHHHHHHHhCCCEeC-C
Confidence 38999999999985 55 8888 89988 33333 44799999999999999999999999999 9
Q ss_pred ceeEEeecC
Q psy17775 132 KRLAVAYSK 140 (211)
Q Consensus 132 k~L~V~~SK 140 (211)
++|+|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999986
No 75
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.1e-09 Score=79.98 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=61.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++..++ ..+|+|||+|.+.+.|+.||..|+|..|. |++|+|.++
T Consensus 19 ~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 91 (114)
T 2do0_A 19 FVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDG------KSRGIGTVTFEQSIEAVQAISMFNGQLLF-DRPMHVKMD 91 (114)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTC------SEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC------CeeeEEEEEECCHHHHHHHHHHhCCCEeC-CCEEEEEEc
Confidence 48999999999985 55 9999999983222 34789999999999999999999999999 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+...-
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76443
No 76
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.88 E-value=1.9e-09 Score=79.14 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=62.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC---ceeEE
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG---KRLAV 136 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G---k~L~V 136 (211)
.|.||+..++.+.| |. .|+.|++++... + ..+|+|||+|.+.+.|+.||..|+|..|. | ++|+|
T Consensus 19 ~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-gg~~~~l~V 91 (105)
T 2dnh_A 19 FVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD---G---SSKGCAFVKFSSHTEAQAAIHALHGSQTM-PGASSSLVV 91 (105)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS---S---CEEEEEEEEESSHHHHHHHHHHHSSCCCC-TTCSSCCEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC---C---CcCcEEEEEeCCHHHHHHHHHHHcCCccC-CCCCccEEE
Confidence 48999999999985 55 899999998322 2 34799999999999999999999999999 7 99999
Q ss_pred eecCCcccc
Q psy17775 137 AYSKQVFLS 145 (211)
Q Consensus 137 ~~SK~~~i~ 145 (211)
.+++.....
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 77
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=2.8e-09 Score=78.80 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=63.5
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhC------CceecCCce
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLS------KTLLCNGKR 133 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~------g~~Lf~Gk~ 133 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|+|||+|.+.++|+.||..|+ |..|. |++
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~-g~~ 92 (111)
T 1x4h_A 19 FIRNLSFDSEEEALGEVLQQFGDLKYVRVVL--HPDTE---HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD-GRQ 92 (111)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEECCB--CSSSC---CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-SCE
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeEEEEEEe--cCCCC---CCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-CEE
Confidence 48999999999986 54 899999997 33344 457999999999999999999999 99999 999
Q ss_pred eEEeecCCcccc
Q psy17775 134 LAVAYSKQVFLS 145 (211)
Q Consensus 134 L~V~~SK~~~i~ 145 (211)
|+|.+++.....
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999876544
No 78
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=2.5e-09 Score=77.05 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=59.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ ++|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 14 ~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 79 (92)
T 2dgt_A 14 HVGNISPTCTNQELRAKFEEYGPVIECDIVK-------------DYAFVHMERAEDAVEAIRGLDNTEFQ-GKRMHVQLS 79 (92)
T ss_dssp EEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------------SEEEEEESCHHHHHHHHHHHTTEEET-TEEEEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------------CEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEEc
Confidence 38999999999986 55 899999887 59999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+...-.
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 876543
No 79
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=1.5e-09 Score=78.90 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=61.7
Q ss_pred ccCCCCCCCccccc---cc---cce-EeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCce----e
Q psy17775 66 DYYGAPPAFEFERS---YN---SPV-LDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKR----L 134 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~-rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~----L 134 (211)
.|.||+..++.+.| |. .|+ .|++++ ++.++ ..+|.|||+|.+.++|+.|++.|+|..|. |+. |
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~~~~~l 86 (99)
T 2div_A 13 WMGDLEPYMDENFISRAFATMGETVMSVKIIR--NRLTG---IPAGYCFVEFADLATAEKCLHKINGKPLP-GATPAKRF 86 (99)
T ss_dssp EECSCCTTCCHHHHHHHHHHTTCCCCEEEEEE--CSSSC---CEEEEEEEECSCHHHHHHHHHTTTTSEES-SCSSCEEC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcceEEEEee--cCCCC---CcCCEEEEEeCCHHHHHHHHHHHcCCccC-CCCcceeE
Confidence 38999999999986 55 888 999998 33333 34699999999999999999999999999 999 9
Q ss_pred EEeecCCcc
Q psy17775 135 AVAYSKQVF 143 (211)
Q Consensus 135 ~V~~SK~~~ 143 (211)
+|.+++...
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998764
No 80
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=3.3e-09 Score=79.53 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=60.7
Q ss_pred ccCCCCCCCccccc------cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEE
Q psy17775 66 DYYGAPPAFEFERS------YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136 (211)
Q Consensus 66 ~v~nl~~~i~~d~L------Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V 136 (211)
.|.|||..++.+.| |. .|+.|++++. .-++..-..+|.|||+|.+.++|+.||..|+|..|. |++|+|
T Consensus 19 ~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~--~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-gr~l~V 95 (111)
T 2cpi_A 19 FVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS--TSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-GRTLKA 95 (111)
T ss_dssp EEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECC--SSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET-TEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecC--CCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC-CEEEEE
Confidence 38899998888865 45 8999999872 211111123589999999999999999999999999 999999
Q ss_pred eecCCccc
Q psy17775 137 AYSKQVFL 144 (211)
Q Consensus 137 ~~SK~~~i 144 (211)
.+++...-
T Consensus 96 ~~a~~k~~ 103 (111)
T 2cpi_A 96 SLGTTKYC 103 (111)
T ss_dssp ESCCCCSC
T ss_pred Eecccccc
Confidence 99987653
No 81
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=3.4e-09 Score=77.40 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=60.8
Q ss_pred ccCCCCCCCccccc---cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCc
Q psy17775 66 DYYGAPPAFEFERS---YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQV 142 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~ 142 (211)
.|.||+..++.+.| |..+-.|+++++..+ ..+|.|||+|.+.++|+.||..|+|..|. |++|+|.+++..
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~ 91 (101)
T 2fc9_A 19 VLSNLSYSATEETLQEVFEKATFIKVPQNQNG------KSKGYAFIEFASFEDAKEALNSCNKREIE-GRAIRLELQGPR 91 (101)
T ss_dssp EEESCCTTCCHHHHHHHCSSCSEEECCBCSSS------CBCSEEEEECSSHHHHHHHHHHTSSEEET-TEEEEEEECSSC
T ss_pred EEeCCCCCCCHHHHHHHHHhCCEEEEEECCCC------CEeeEEEEEECCHHHHHHHHHHhCCCEeC-CeEEEEEEcCCC
Confidence 48999999999875 776667777773222 45799999999999999999999999999 999999999876
Q ss_pred cc
Q psy17775 143 FL 144 (211)
Q Consensus 143 ~i 144 (211)
.-
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 82
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.87 E-value=4.4e-09 Score=79.81 Aligned_cols=73 Identities=12% Similarity=-0.004 Sum_probs=63.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++. . +| ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.+|
T Consensus 39 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~-~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 111 (124)
T 2kt5_A 39 LVSNLDFGVSDADIQELFAEFGTLKKAAVDYD--R-SG---RSLGTADVHFERRADALKAMKQYKGVPLD-GRPMDIQLV 111 (124)
T ss_dssp EEESCCSSCCHHHHHHHHHTTSCCSEEEEECC--S-SS---SCCSEEEEEESSHHHHHHHHHHHTTEESS-SCEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEC--C-CC---CEeeEEEEEECCHHHHHHHHHHcCCCEEC-CcEEEEEEe
Confidence 38999999999885 55 8999999983 2 33 45799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 112 ~~~~~~ 117 (124)
T 2kt5_A 112 ASQIDL 117 (124)
T ss_dssp CCTTCC
T ss_pred CCCCCC
Confidence 887665
No 83
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.87 E-value=3e-09 Score=79.75 Aligned_cols=63 Identities=10% Similarity=-0.020 Sum_probs=58.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
-|-||+..++.+.| |. .|+.+++.. + +|.|||+|.|.+.|+.||..|||..|+ |++|+|.++
T Consensus 11 ~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----------~-kGfaFVey~~~~eA~~Ai~~Ln~~~l~-gr~I~V~~A 78 (89)
T 2wbr_A 11 LLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----------N-QGIALCKYTTREEANKAQMALNNCVLA-NTTIFAESP 78 (89)
T ss_dssp EEECCCTTCCCHHHHHHHHHHSCEEEEEEET----------T-TTEEEEEESSHHHHHHHHHHHTTEEET-TEEEEEECC
T ss_pred EEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----------C-CcEEEEEECCHHHHHHHHHHhcCCEEC-CcEEEEEEC
Confidence 38899999999985 66 999999988 4 799999999999999999999999999 999999998
Q ss_pred C
Q psy17775 140 K 140 (211)
Q Consensus 140 K 140 (211)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.7e-09 Score=79.43 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=62.5
Q ss_pred ccCCCCCCCccccc---cc---cce--------EeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC
Q psy17775 66 DYYGAPPAFEFERS---YN---SPV--------LDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG 131 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~--------rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G 131 (211)
.|.||+..++.+.| |. .|. .|+++. ++.++ ..+|.|||+|.+.+.|+.||..|+|..|. |
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~--~~~~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g 92 (113)
T 2cpe_A 19 YVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL--DKETG---KPKGDATVSYEDPPTAKAAVEWFDGKDFQ-G 92 (113)
T ss_dssp EEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCB--CTTTC---SBCSEEEEEBSSHHHHHHHHHHHTTCEET-T
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEE--eCCCC---CeeeEEEEEECCHHHHHHHHHHcCCCccC-C
Confidence 48999999999885 55 777 688887 33334 45799999999999999999999999999 9
Q ss_pred ceeEEeecCCcccc
Q psy17775 132 KRLAVAYSKQVFLS 145 (211)
Q Consensus 132 k~L~V~~SK~~~i~ 145 (211)
++|+|.+++...-.
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999886544
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3.4e-09 Score=77.39 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=59.8
Q ss_pred ccCCCCCCCccccc-------cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 66 DYYGAPPAFEFERS-------YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 66 ~v~nl~~~i~~d~L-------Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
.|.||+..++.+.| |. .|+.|++++ +. ..+|.|||+|.+.++|+.||..|+|..|. |++|+
T Consensus 13 ~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~--~~------~~rg~afV~f~~~~~A~~Ai~~l~g~~~~-gr~l~ 83 (96)
T 2dgx_A 13 QVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSP--HT------DYQLKAVVQMENLQDAIGAVNSLHRYKIG-SKKIL 83 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECS--CC------STTCCEEEEESSHHHHHHHHHHHTTEEET-TEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEe--CC------CCCeEEEEEECCHHHHHHHHHHhCCCEEC-CeEEE
Confidence 38999999988865 44 899999997 11 11789999999999999999999999999 99999
Q ss_pred EeecCCccc
Q psy17775 136 VAYSKQVFL 144 (211)
Q Consensus 136 V~~SK~~~i 144 (211)
|.+++....
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987653
No 86
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=2.9e-09 Score=76.42 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=59.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ |+|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-------------g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 77 (90)
T 2dnq_A 12 FIGNLPREATEQEIRSLFEQYGKVLECDIIK-------------NYGFVHIEDKTAAEDAIRNLHHYKLH-GVNINVEAS 77 (90)
T ss_dssp EEESCCSSCCHHHHHHHHHTSSCEEEEEEET-------------TEEEEEESSHHHHHHHHHHHTTCBCS-SCBCEEECS
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-------------CEEEEEECCHHHHHHHHHHhcCCccC-CcEEEEEEC
Confidence 38999999999986 55 899998886 89999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+...-.
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 886654
No 87
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.4e-09 Score=80.14 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=61.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++..+ ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 33 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------~~kg~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 104 (109)
T 2err_A 33 HVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------GSKGFGFVTFENSADADRAREKLHGTVVE-GRKIEVNNA 104 (109)
T ss_dssp EEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-------BCTTEEEEECCCSHHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-------CCceEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEEC
Confidence 48999999999985 55 999999988322 23799999999999999999999999999 999999999
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
+...
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8753
No 88
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.7e-09 Score=79.06 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=58.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++ . +|+|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 31 ~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----------~-~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 98 (101)
T 2la4_A 31 YIGNIPHFATEADLIPLFQNFGFILDFKHYP----------E-KGCCFIKYDTHEQAAVCIVALANFPFQ-GRNLRTGWG 98 (101)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCCSEEEEET----------T-TTEEEEECSSHHHHHHHHHHHTTCEET-TEECCCCBC
T ss_pred EEcCCCcccCHHHHHHHHHhCCCEEEEEEec----------C-CCEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEec
Confidence 48999999999985 54 899999998 5 799999999999999999999999999 999999998
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
|.
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 89
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.86 E-value=3.2e-09 Score=75.41 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=59.2
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|||..++.+.| |. .|..|++++ +.-++ ..+|.|||+|.+.++|+.|+ .|+|..|. |++|+|.+++
T Consensus 11 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~a~-~~~g~~~~-g~~l~V~~a~ 83 (89)
T 3ucg_A 11 VGNVDYGATAEELEAHFHGCGSVNRVTILC--DKFSG---HPKGFAYIEFSDKESVRTSL-ALDESLFR-GRQIKVIPKR 83 (89)
T ss_dssp EESCCTTCCHHHHHHHHGGGCCEEEEEEEE--SCSSS---SCCEEEEEEESSTHHHHHHG-GGTTCEET-TEECEEEETT
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEe--cCCCC---CcceEEEEEECCHHHHHHHH-hcCCCEEC-CcEEEEEEcc
Confidence 7899999998875 55 899999998 22233 34799999999999999999 99999999 9999999998
Q ss_pred Cc
Q psy17775 141 QV 142 (211)
Q Consensus 141 ~~ 142 (211)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 90
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.86 E-value=1.7e-09 Score=79.09 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=60.3
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|||..++.+.| |. .|..|++++ ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.+++
T Consensus 5 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~ 73 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFSYYGPLRTVWIAR----------NPPGFAFVEFEDPRDAEDAVRGLDGKVIC-GSRVRVELST 73 (101)
T ss_dssp EECCCSSCSHHHHHHHHHHHCCCSEEEEES----------SSSSEEEEECSSHHHHHHHHHHHHHSCSS-SCCCEEEESS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEee----------CCCCEEEEEECCHHHHHHHHHHHCCCeEC-CcEEEEEEcc
Confidence 6799999999886 55 999999998 45799999999999999999999999999 9999999998
Q ss_pred Cccc
Q psy17775 141 QVFL 144 (211)
Q Consensus 141 ~~~i 144 (211)
...-
T Consensus 74 ~~~~ 77 (101)
T 2hvz_A 74 GMPR 77 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
No 91
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.86 E-value=3e-09 Score=83.23 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=60.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++ ..+|+|||+|.+..+|+.|+..|+|..|. |++|+|.++
T Consensus 77 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 145 (150)
T 2i2y_A 77 YVGNLGNNGNKTELERAFGYYGPLRSVWVAR----------NPPGFAFVEFEDPRDAADAVRELDGRTLC-GCRVRVELS 145 (150)
T ss_dssp EEESCCSCCSCHHHHHHHHHHSCEEEEEECS----------SSCSEEEEEESSHHHHHHHHHHHSSSCSS-SSCCEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCEEEEEEee----------CCCcEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEEc
Confidence 38899999999986 55 999999999 56899999999999999999999999999 999999999
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
+..
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 92
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.86 E-value=3.4e-09 Score=78.02 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=59.5
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ |+|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 15 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 80 (103)
T 2dgu_A 15 FVRNLANTVTEEILEKAFSQFGKLERVKKLK-------------DYAFIHFDERDGAVKAMEEMNGKDLE-GENIEIVFA 80 (103)
T ss_dssp EEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------------SCEEEEESSHHHHHHHHHHHTTEEET-TEEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------------CEEEEEeCCHHHHHHHHHHHCCCccC-CCEEEEEEc
Confidence 48999999999986 55 899998877 79999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 886654
No 93
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.86 E-value=1.6e-09 Score=84.82 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=65.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHh-CCceecCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCC
Q psy17775 103 EGCCMVQMGDTLSAERAMGNL-SKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNR 181 (211)
Q Consensus 103 ~g~AlVqm~D~~~A~~Ai~~L-~g~~Lf~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~ 181 (211)
+|+++|+|.+..+|+.|+..| +|..|. | .+++.+++......... . .........
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~-G-~~~~~~a~~~~~~~~~~----~------------------~~~~~~~~~ 68 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVD-G-EWTYDDATKTFTVTEGS----H------------------HHHHHMHRD 68 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCC-C-EEEEETTTTEEEEECSS----S------------------SCCCCSCSS
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCC-C-ceecccccCcccccccc----c------------------ccccccccc
Confidence 699999999999999999999 999999 9 99999887655431000 0 000001122
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+++.+|||.|||.++||++|.++|+++|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 98 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYG 98 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 456778999999999999999999999987
No 94
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.85 E-value=3.5e-09 Score=77.83 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=62.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCcee---cCCceeEE
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLL---CNGKRLAV 136 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~L---f~Gk~L~V 136 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|+.||..|+|..+ . |++|+|
T Consensus 17 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l~v 90 (106)
T 2dgp_A 17 FIGQIPRNLDEKDLKPLFEEFGKIYELTVLK--DRFTG---MHKGCAFLTYCERESALKAQSALHEQKTLPGM-NRPIQV 90 (106)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCCCEEECCC--CSSSC---SCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC-SSCCEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe--cCCCC---CcceEEEEEECCHHHHHHHHHHhcCCcccCCC-CceEEE
Confidence 38999999999986 55 999999988 33344 4579999999999999999999999998 6 899999
Q ss_pred eecCCcccc
Q psy17775 137 AYSKQVFLS 145 (211)
Q Consensus 137 ~~SK~~~i~ 145 (211)
.+++...-.
T Consensus 91 ~~a~~~~~~ 99 (106)
T 2dgp_A 91 KPADSESRG 99 (106)
T ss_dssp EECCCCSCC
T ss_pred EECCccccc
Confidence 999876543
No 95
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=2.3e-09 Score=82.72 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=58.8
Q ss_pred ccCCCCCC-Cccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCC--ceecCCceeEE
Q psy17775 66 DYYGAPPA-FEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSK--TLLCNGKRLAV 136 (211)
Q Consensus 66 ~v~nl~~~-i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g--~~Lf~Gk~L~V 136 (211)
-|.||+.. ++.+.| |. .|..|++++ . +|+|||+|.|.++|+.||+.|++ ..|. |++|.|
T Consensus 29 ~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~----------~-kg~aFVef~~~~~A~~Ai~~l~~~~~~l~-Gr~l~V 96 (112)
T 1x4f_A 29 HLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR----------M-KSQAFIEMETREDAMAMVDHCLKKALWFQ-GRCVKV 96 (112)
T ss_dssp EEESCCCSSCCSHHHHTTTTTTSCCSEEEEET----------T-TTEEEEECSSHHHHHHHHHHHHHSCCCSS-SSCCEE
T ss_pred EEeCCCCccCCHHHHHHHHHhcCCEEEEEEec----------C-CCEEEEEECCHHHHHHHHHHhccCCceEC-CEEEEE
Confidence 38899996 998874 66 999999998 5 79999999999999999999865 5578 999999
Q ss_pred eecCCcccc
Q psy17775 137 AYSKQVFLS 145 (211)
Q Consensus 137 ~~SK~~~i~ 145 (211)
.||+.....
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999876554
No 96
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=3.7e-09 Score=75.87 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=58.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ |+|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 13 ~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 78 (90)
T 2dnp_A 13 FVGNVSAACTSQELRSLFERRGRVIECDVVK-------------DYAFVHMEKEADAKAAIAQLNGKEVK-GKRINVELS 78 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------------SCEEEEESCHHHHHHHHHHHTTCEET-TEECEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------------CEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEC
Confidence 48999999999986 55 899999887 59999999999999999999999999 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+...-
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 97
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=1.9e-09 Score=78.25 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=59.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..+++++ +..+| ..+|.|||+|.+.+.|+.||..|+|..|. |++|+|.++
T Consensus 19 ~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~g---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~a 92 (98)
T 2cqp_A 19 KVQNMPFTVSIDEILDFFYGYQVIPGSVCLK--YNEKG---MPTGEAMVAFESRDEATAAVIDLNDRPIG-SRKVKLVLG 92 (98)
T ss_dssp EEESCCTTCCHHHHHHHTTTSCCCTTTCEEE--ECSSS---CEEEEEEEEESCHHHHHHHHHHTTTCEET-TEECEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCccceEEEE--ECCCC---CeeeEEEEEECCHHHHHHHHHHhCCCeeC-CeEEEEEEc
Confidence 48999999998875 66 777777776 22223 34799999999999999999999999999 999999998
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 864
No 98
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.83 E-value=4.3e-09 Score=76.34 Aligned_cols=76 Identities=14% Similarity=0.011 Sum_probs=61.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCC-CCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRG-MSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~-~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.||+..++.+.| |. .|+.|++++..+. -++ ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.+
T Consensus 9 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~ 84 (98)
T 2cpf_A 9 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVL---LSMGFGFVEYKKPEQAQKALKQLQGHTVD-GHKLEVRI 84 (98)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCE---EEEEEEEEEESSHHHHHHHHHHSTTCEET-TEECEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCc---CcccEEEEEECCHHHHHHHHHHhCCCeeC-CeEEEEEE
Confidence 48899999999986 55 8999999872110 011 12589999999999999999999999999 99999999
Q ss_pred cCCcccc
Q psy17775 139 SKQVFLS 145 (211)
Q Consensus 139 SK~~~i~ 145 (211)
++...-.
T Consensus 85 a~~~~~~ 91 (98)
T 2cpf_A 85 SERATKP 91 (98)
T ss_dssp SSCSSCC
T ss_pred ccCCCCC
Confidence 9886654
No 99
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.83 E-value=2.3e-09 Score=77.17 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=58.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..+++++ +..++ ..+|.|||+|.+.+.|+.||..|+|..|. |++|+|.+|
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~g---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-gr~l~v~~a 92 (95)
T 2ek1_A 19 KVQNMPFTVSIDEILDFFYGYQVIPGSVCLK--YNEKG---MPTGEAMVAFESRDEATAAVIDLNDRPIG-SRKVKLSGP 92 (95)
T ss_dssp EEECCCTTCCHHHHHHHTTTSCBCTTCCEEE--ECTTS---CEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCccceEEEE--eCCCC---CEeeEEEEEECCHHHHHHHHHHhCCCeEC-CcEEEEEec
Confidence 48999999999875 66 777777776 22222 34699999999999999999999999999 999999998
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
+.
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.82 E-value=3.7e-09 Score=80.12 Aligned_cols=74 Identities=16% Similarity=0.038 Sum_probs=62.6
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++ +..++ ..+|+|||+|.+.+.|+.||..|+|..|. |++|+|.++
T Consensus 26 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 99 (126)
T 3ex7_B 26 FVTGVHEEATEEDIHDKFAEYGEIKNIHLNL--DRRTG---YLKGYTLVEYETYKEAQAAMEGLNGQDLM-GQPISVDWC 99 (126)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEECCB--CTTTS---SBCSCEEEEESSHHHHHHHHHHHTTCBSS-SSBCEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe--cCCCC---ccceEEEEEECCHHHHHHHHHHhCCCeeC-CeEEEEEEe
Confidence 48999999999986 55 999999988 32233 34899999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+...-.
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 875543
No 101
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.82 E-value=2.8e-09 Score=82.15 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=63.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ ++.++ ..+|.|||+|.+.+.|+.||..|+|..|. |++|+|.++
T Consensus 46 ~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 119 (139)
T 1u6f_A 46 MVNYIPTTVDEVQLRQLFERYGPIESVKIVC--DRETR---QSRGYGFVKFQSGSSAQQAIAGLNGFNIL-NKRLKVALA 119 (139)
T ss_dssp EEESCSTTCCHHHHHHHHHHHSCEEEEEEEE--ETTTT---EEEEEEEEEESSHHHHHHHHHHTTTEECS-SCEEEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--cCCCC---CcceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEC
Confidence 48999999999886 55 999999998 22223 34789999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+...-.
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 102
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=2.6e-09 Score=78.10 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=61.7
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++.+.| |. .|+.|++++ +..+| ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.+++
T Consensus 13 V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~ 86 (104)
T 1p1t_A 13 VGNIPYEATEEQLKDIFSEVGPVVSFRLVY--DRETG---KPKGYGFCEYQDQETALSAMRNLNGREFS-GRALRVDNAA 86 (104)
T ss_dssp EESCCTTSCHHHHHHHHHTTSCCSEEEEEE--ETTTT---EEEEEEEEECSCHHHHHHHHHHSSSBSCS-SSCBEEEETT
T ss_pred EeCCCCcCCHHHHHHHHHhcCCeeEEEEEe--CCCCC---ccceEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEeCC
Confidence 8899999999886 54 899999998 22222 33799999999999999999999999999 9999999998
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
.....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76543
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.82 E-value=4e-09 Score=76.22 Aligned_cols=71 Identities=11% Similarity=0.015 Sum_probs=60.1
Q ss_pred ccCCCCCCCccc-------cccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 66 DYYGAPPAFEFE-------RSYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 66 ~v~nl~~~i~~d-------~LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
.|.||+..++.+ .+|. .|..|++++ .+ ..+|.|||+|.+.++|+.|+..|+|..|. |++|+
T Consensus 12 ~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~ 82 (97)
T 1nu4_A 12 YINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SL------KMRGQAFVIFKEVSSATNALRSMQGFPFY-DKPMR 82 (97)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HH------HHTTCEEEEESSHHHHHHHHHHHTTCEET-TEECE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CC------CcCcEEEEEeCCHHHHHHHHHHhCCCEEC-CcEEE
Confidence 389999999998 4556 899998884 11 23699999999999999999999999999 99999
Q ss_pred EeecCCcccc
Q psy17775 136 VAYSKQVFLS 145 (211)
Q Consensus 136 V~~SK~~~i~ 145 (211)
|.+++.....
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999886543
No 104
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=3.6e-09 Score=79.69 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=60.2
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++.+.| |. .|++|++++ . +|+|||+|.+..+|+.||..|+|..|. |++|.|.|++
T Consensus 15 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----------~-~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a~ 82 (111)
T 1whx_A 15 AKNLPAGTLAAEIQETFSRFGSLGRVLLPE----------G-GITAIVEFLEPLEARKAFRHLAYSKFH-HVPLYLEWAP 82 (111)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEECCS----------S-SSCEEEEESCHHHHHHHHHHHTTCBSS-SSBCEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----------C-CCEEEEEeCCHHHHHHHHHHhCCCEEC-CeEEEEEECC
Confidence 8899999998875 55 899999887 4 799999999999999999999999999 9999999998
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
.....
T Consensus 83 ~~~~~ 87 (111)
T 1whx_A 83 IGVFG 87 (111)
T ss_dssp TTTTC
T ss_pred CCccC
Confidence 76554
No 105
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.81 E-value=6.5e-09 Score=77.39 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=59.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC-----cee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG-----KRL 134 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G-----k~L 134 (211)
.|.||+..++.+.| |. .|+.|++++ . |+|||+|.+.++|+.||..|+|..|. | ++|
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~----------~--g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~~~~~~i 85 (108)
T 1x4c_A 19 VVSGLPPSGSWQDLKDHMREAGDVCYADVYR----------D--GTGVVEFVRKEDMTYAVRKLDNTKFR-SHEGETAYI 85 (108)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCEEEEEEET----------T--TEEEEEESSHHHHHHHHHHSSSEEEE-CTTSCEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEEec----------C--CEEEEEECCHHHHHHHHHHHCcCCcc-CCcCcceEE
Confidence 38999999999886 55 999999999 4 99999999999999999999999999 9 999
Q ss_pred EEeecCCcc
Q psy17775 135 AVAYSKQVF 143 (211)
Q Consensus 135 ~V~~SK~~~ 143 (211)
+|.+++...
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998754
No 106
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=4.3e-09 Score=75.49 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=59.6
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
.|.|||..++.+.| |. .|+.|++++...+ ..+|.|||+|.+.+.|+.||. |+|..|. |++|+|.+++
T Consensus 14 ~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~-~~g~~~~-gr~i~v~~a~ 85 (91)
T 2dgw_A 14 KLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHG------NKTGYIFVDFSNEEEVKQALK-CNREYMG-GRYIEVFREK 85 (91)
T ss_dssp EEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTS------CEEEEEEEECSSHHHHHHHHH-SCSEEET-TEEEEEEEES
T ss_pred EEECCCCCCCHHHHHHHHhhCCceEEEEEECCCC------CCceEEEEEECCHHHHHHHHH-hCCceeC-CcEEEEEECC
Confidence 48999999999875 55 8999999983222 447899999999999999999 9999999 9999999998
Q ss_pred Cc
Q psy17775 141 QV 142 (211)
Q Consensus 141 ~~ 142 (211)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 107
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.81 E-value=5.2e-09 Score=82.07 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=63.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..+| ..+|.|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 147 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR--DRYTK---ESRGFAFVRFHDKRDAEDAMDAMDGAVLD-GRELRVQMA 147 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCC--CSSCT---TSCCEEEEEESBHHHHHHHHHHSTTEESS-SSEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEee--cCCCC---ccceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEC
Confidence 38999999999986 55 899999988 44444 45799999999999999999999999999 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+...-
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87543
No 108
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=4.4e-09 Score=78.59 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=61.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|+.|| .|+|..|. |++|+|.++
T Consensus 29 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~~l~V~~a 101 (114)
T 2cq4_A 29 FCMQLAARIRPRDLEDFFSAVGKVRDVRIIS--DRNSR---RSKGIAYVEFCEIQSVPLAI-GLTGQRLL-GVPIIVQAS 101 (114)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEECC--SCCSS---SCCCCEEEEESCGGGHHHHH-HHTTEEET-TEEEEEEEH
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEeEEEEEe--cCCCC---ccCcEEEEEeCcHHHHHHHH-HcCCCEeC-CeEEEEEec
Confidence 38999999999885 55 899999987 33333 45799999999999999999 99999999 999999999
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
+...
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 109
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.81 E-value=5.6e-09 Score=79.83 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=58.6
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|++|+..|+|..|. |++|+|.+|
T Consensus 67 ~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~A 140 (140)
T 2ku7_A 67 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPL--DYETE---KHRGFAFVEFELAEDAAAAIDNMNESELF-GRTIRVNLA 140 (140)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEECCC--CTTTC---CCCSEEEEEESCHHHHHHHHHHSTEEEET-TEEEEEEC-
T ss_pred EEEeCCCCCCHHHHHHHHHhcCCEEEEEEee--cCCCC---CcCcEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEeC
Confidence 48999999999885 55 999999988 33334 45799999999999999999999999999 999999885
No 110
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.80 E-value=4.2e-09 Score=74.44 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=59.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++. ..++. ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 8 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~--~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 82 (88)
T 4a8x_A 8 HIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE--RMHPH--LSKGYAYVEFENPDEAEKALKHMDGGQID-GQEITATAV 82 (88)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEECCEE--TTEEE--EECSEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeC--CCCCC--CCCcEEEEEEecHHHHHHHHHHcCCCeEC-CeEEEEEEC
Confidence 37899999999986 54 8999999872 11110 14799999999999999999999999999 999999998
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
+.+
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 111
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=5.6e-09 Score=78.22 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=61.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ ++.++ ..+|+|||+|.+.+.|+.||..|++ .|. |++|+|.++
T Consensus 21 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~Ai~~~~~-~~~-g~~l~V~~a 93 (116)
T 2cqd_A 21 FVGGLPYHTTDASLRKYFEGFGDIEEAVVIT--DRQTG---KSRGYGFVTMADRAAAERACKDPNP-IID-GRKANVNLA 93 (116)
T ss_dssp EEECCCSSCCHHHHHHHHHTTSCEEEEEESC--CSSSC---CCCSEEEEEESSHHHHHHHHTCSSC-EET-TEECEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCeeEEEEEE--cCCCC---ccceEEEEEECCHHHHHHHHHhCCC-cCC-CEEEEEEEc
Confidence 48999999999986 55 899999998 43344 4579999999999999999999999 777 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+....
T Consensus 94 ~~~~~ 98 (116)
T 2cqd_A 94 YLGAK 98 (116)
T ss_dssp TTTCC
T ss_pred ccCCC
Confidence 86544
No 112
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.80 E-value=5.5e-09 Score=82.23 Aligned_cols=73 Identities=15% Similarity=0.007 Sum_probs=62.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 43 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 116 (156)
T 1h2v_Z 43 YVGNLSFYTTEEQIYELFSKSGDIKKIIMGL--DKMKK---TACGFCFVEYYSRADAENAMRYINGTRLD-DRIIRTDWD 116 (156)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHTTTSEET-TEECEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe--cCCCC---ccceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEC
Confidence 48999999999886 55 999999998 33233 34689999999999999999999999999 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+...-
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87543
No 113
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=9.3e-09 Score=74.98 Aligned_cols=65 Identities=22% Similarity=0.117 Sum_probs=56.2
Q ss_pred ccCCCCCCCccccc---cc-----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN-----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn-----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
.|.||+..++.+.| |. .|.+|++.+ |+|||+|.+.++|+.||..|+|..|. |++|+|.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~-------------g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~ 84 (99)
T 2cpd_A 19 YVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR-------------DYAFVHFSNREDAVEAMKALNGKVLD-GSPIEVT 84 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS-------------SEEEEEESSHHHHHHHHHHHSSEEET-TEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC-------------CeEEEEeCCHHHHHHHHHHhCCCEeC-CcEEEEE
Confidence 38999999999986 44 567776554 89999999999999999999999999 9999999
Q ss_pred ecCCccc
Q psy17775 138 YSKQVFL 144 (211)
Q Consensus 138 ~SK~~~i 144 (211)
+++...-
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 114
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=7.2e-09 Score=75.29 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=58.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecC-CceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCN-GKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~-Gk~L~V~~ 138 (211)
.|.||+..++.+.| |. .|+.|+++. . +|+|||+|.+.++|+.|+..|+|..|.. |++|+|.+
T Consensus 21 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~----------~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 21 WVGGLGPNTSLAALAREFDRFGSIRTIDHVK----------G-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp EEECCCSSCCHHHHHHHHHTTSCEEEEEECS----------S-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC----------C-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 48999999999986 55 899999988 5 7999999999999999999999998764 69999999
Q ss_pred cCCc
Q psy17775 139 SKQV 142 (211)
Q Consensus 139 SK~~ 142 (211)
++..
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9874
No 115
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.79 E-value=8.4e-09 Score=75.80 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=56.1
Q ss_pred ccCCCCC-CCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPP-AFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~-~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.||+. .++.+.| |. .|..|++.+ |.|||+|.+.++|+.|+..|+|..|. |++|+|.+
T Consensus 26 ~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~-------------g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~ 91 (97)
T 2xnq_A 26 FIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN-------------AFGFIQFDNPQSVRDAIEXESQEMNF-GKKLILEV 91 (97)
T ss_dssp EEESCCSSCCCHHHHHHHHGGGSCEEEEEECS-------------SEEEEEESSHHHHHHHHHHHTTSEET-TEECEEEE
T ss_pred EEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC-------------CEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEe
Confidence 3899997 8999986 55 888887744 99999999999999999999999999 99999999
Q ss_pred cCCc
Q psy17775 139 SKQV 142 (211)
Q Consensus 139 SK~~ 142 (211)
++..
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9864
No 116
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.79 E-value=6.7e-09 Score=76.25 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=61.0
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.+.|+.|| .|+|..|. |++|+|.+++
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~~l~V~~a~ 91 (103)
T 2dng_A 19 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVR--DKDTD---KFKGFCYVEFDEVDSLKEAL-TYDGALLG-DRSLRVDIAE 91 (103)
T ss_dssp EEESCCTTCCHHHHHHHTTTSCEEEEEEEE--CSSSC---SEEEEEEEEESSHHHHHHHG-GGTTCEET-TEECEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhCCceEEEEee--cCCCC---ccceEEEEEECCHHHHHHHH-hhCCCeEC-CeEEEEEEec
Confidence 38999999999985 55 799999998 33233 34689999999999999999 89999999 9999999998
Q ss_pred Cccc
Q psy17775 141 QVFL 144 (211)
Q Consensus 141 ~~~i 144 (211)
...-
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 117
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.79 E-value=8.8e-09 Score=73.86 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=59.9
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
.|.|||..++.+.| |. .|..|++.+ + +|.|||+|.+.++|+.|++.|+|..+. |++|+|.+++
T Consensus 9 ~V~nLp~~~t~~~l~~~F~~~~v~~~~i~~----------~-~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~a~ 76 (88)
T 1wg1_A 9 LVKNLPQDSNCQEVHDLLKDYDLKYCYVDR----------N-KRTAFVTLLNGEQAQNAIQMFHQYSFR-GKDLIVQLQP 76 (88)
T ss_dssp EEESCCSSCCHHHHHHHTCSSCCCCEEEEG----------G-GTEEEECCSCHHHHHHHHHHHTTEEET-TEEEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHhhCCeEEEEEeC----------C-CcEEEEEECCHHHHHHHHHHhCCCeEC-CcEEEEEEcC
Confidence 38899999998875 55 788888865 4 799999999999999999999999999 9999999998
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
...+.
T Consensus 77 ~~~~~ 81 (88)
T 1wg1_A 77 TDALL 81 (88)
T ss_dssp CCCCC
T ss_pred CCceE
Confidence 87664
No 118
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.79 E-value=4.4e-09 Score=75.25 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=62.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++. . + ..+|.|||+|.+.+.|+.|+..|+|..|. |++|+|.++
T Consensus 12 ~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~---g---~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a 83 (92)
T 2dgv_A 12 FVRNLPFDFTWKMLKDKFNECGHVLYADIKME-N---G---KSKGCGVVKFESPEVAERACRMMNGMKLS-GREIDVRID 83 (92)
T ss_dssp EECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-S---S---CEEEEEEEEESSHHHHHHHHHHHTTCCBT-TBCCCCEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-C---C---CcceEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEc
Confidence 48999999999886 55 8999999872 2 2 34799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 886643
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.78 E-value=8.4e-09 Score=77.47 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=57.9
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ |+|||+|.+.+.|+.|+..|+|..|. |++|+|.++
T Consensus 35 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~k-------------g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 100 (108)
T 2jvo_A 35 FVRPFPLDVQESELNEIFGPFGPMKEVKILN-------------GFAFVEFEEAESAAKAIEEVHGKSFA-NQPLEVVYS 100 (108)
T ss_dssp EECSSCTTCCHHHHHHHHTTTSCCCEEEEET-------------TEEEEECSSHHHHHHHHHHHTTCEET-TEECEEESC
T ss_pred EEECCCCCCCHHHHHHHHHhcCCEEEEEEEC-------------CEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEEe
Confidence 48999999999986 55 899998886 89999999999999999999999998 999999999
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
+...
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8754
No 120
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.78 E-value=1.2e-08 Score=74.88 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=59.6
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
-|.||+..++.+.| |. -|..|++++.. ..+| ..+|.|||+|.+.++|+.|| .|+|..|. |++|+|.+++
T Consensus 23 ~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~-~~~g---~~~g~afV~f~~~~~a~~Ai-~l~g~~~~-g~~l~V~~a~ 96 (100)
T 2j76_E 23 FLGNLPYDVTEESIKEFFRGLNISAVRLPREP-SNPE---RLKGFGYAEFEDLDSLLSAL-SLNEESLG-NRRIRVDVAD 96 (100)
T ss_dssp EESCCSSCCSSSHHHHHSCSSCEEEEECSCCT-TTTC---CCCSCEEEEECCHHHHHHHH-HTTTCCBT-TBCCCCEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CcCC---ccCeEEEEEECCHHHHHHHH-hcCCCEEC-CeEEEEEecc
Confidence 38999999999975 44 48999998821 0233 45799999999999999999 89999999 9999999998
Q ss_pred Ccc
Q psy17775 141 QVF 143 (211)
Q Consensus 141 ~~~ 143 (211)
...
T Consensus 97 ~~~ 99 (100)
T 2j76_E 97 QAQ 99 (100)
T ss_dssp CSC
T ss_pred CCC
Confidence 753
No 121
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.78 E-value=3.5e-09 Score=75.66 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=57.1
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++.+.| |. .|+.|++++ +..+| ..+|.|||+|.+.+ |+.|+..|+|..|. |++|+|.+|+
T Consensus 6 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~-a~~a~~~l~g~~~~-g~~l~V~~a~ 78 (90)
T 2ki2_A 6 VGNLVYSATSEQVKELFSQFGKVFNVKLIY--DRETK---KPKGFGFVEMQEES-VSEAIAKLDNTDFM-GRTIRVTEAN 78 (90)
T ss_dssp EEEECTTSSHHHHTTTHHHHTCCSEEEECC--CSSSC---CCCEEEEEEECTTH-HHHHHHTSCSSCCS-SSSCSEEEC-
T ss_pred ECCCCCCCCHHHHHHHHHhcCCEEEEEEEE--cCCCC---CcceEEEEEECCHH-HHHHHHHhCCCEEC-CeEEEEEEcC
Confidence 6788988988875 55 999999987 33333 45799999999999 99999999999999 9999999998
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
.....
T Consensus 79 ~~~~~ 83 (90)
T 2ki2_A 79 PKKSL 83 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 86654
No 122
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=3e-09 Score=75.24 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=59.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ +..++ ..+|.|||+|.+.++|+.|++.|+|..|. |+.|++.++
T Consensus 9 ~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~~~~~~~ 82 (85)
T 1x4e_A 9 YIRGLQPGTTDQDLVKLCQPYGKIVSTKAIL--DKTTN---KCKGYGFVDFDSPSAAQKAVTALKASGVQ-AQMAKQSGP 82 (85)
T ss_dssp EEESCCTTCCHHHHHTTSTTTSCEEEEEEEC--CSSSC---SCCSEEEEEESCHHHHHHHHHHHHHHTCC-EESCCSSCC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe--cCCCC---CcCcEEEEEECCHHHHHHHHHHhcCCeEe-eEEEeecCC
Confidence 38899999999875 66 999999998 33344 44799999999999999999999999999 999998766
Q ss_pred C
Q psy17775 140 K 140 (211)
Q Consensus 140 K 140 (211)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 123
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.77 E-value=5.1e-09 Score=72.39 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=56.2
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|.|||..++.+.| |+ .|..|++++ +..++ ..+|.|||+|.+.++|+.|++ |+|..|. |++|+|.+|
T Consensus 4 v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~a~~-~~~~~~~-g~~l~v~~A 75 (75)
T 2mss_A 4 VGGLSVNTTVEDVKHYFEQFGKVDDAMLMF--DKTTN---RHRGFGFVTFESEDIVEKVCE-IHFHEIN-NKMVECKKA 75 (75)
T ss_dssp EECCCSSCCHHHHHHHHHTTSCCSEECCCB--CSSST---TSCBEEEEECSCHHHHHHHHS-SSCCCSS-SCCCEEECC
T ss_pred EecCCCCCCHHHHHHHHHhcCCEEEEEEEe--cCCCC---CcCcEEEEEECCHHHHHHHHH-CCCCEEC-CEEEEEEeC
Confidence 6789999999886 55 899999988 33333 447999999999999999998 9999999 999999875
No 124
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=9.9e-09 Score=76.47 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=59.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCcee--------cCC
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLL--------CNG 131 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~L--------f~G 131 (211)
.|.||+..++.+.| |. .|+.|++++. . ++ ..+|.|||+|.+.+.|+.|+..|+|..| . |
T Consensus 29 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~--~-~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~-~ 101 (114)
T 1x5o_A 29 YISNLPLSMDEQELENMLKPFGQVISTRILRD--S-SG---TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP-T 101 (114)
T ss_dssp EEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC--S-SS---CEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC-S
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC--C-CC---CcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC-C
Confidence 48999999999875 66 8999999983 2 33 4479999999999999999999999999 6 7
Q ss_pred ceeEEeecCCc
Q psy17775 132 KRLAVAYSKQV 142 (211)
Q Consensus 132 k~L~V~~SK~~ 142 (211)
++|.|.|++..
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998854
No 125
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=6.2e-09 Score=76.25 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=62.1
Q ss_pred ccCCCCCCCccccc---cc----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCce-ecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTL-LCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~-Lf~Gk~L~V~ 137 (211)
.|.||+..++.+.| |. .|+.|++++ +. +| ..+|.|||+|.+.+.|+.||..|+|.. |. |++|+|.
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~--~~-~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~~-g~~l~v~ 85 (104)
T 2dhg_A 13 FVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL--DQ-TG---VSKGYGFVKFTDELEQKRALTECQGAVGLG-SKPVRLS 85 (104)
T ss_dssp EEECCCTTCCHHHHHHHHHHHCTTEEEEEEEE--CT-TC---CEEEEEEEEESCHHHHHHHHHHTTTCCSSS-SSCCCCC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEE--CC-CC---CccceEEEEECCHHHHHHHHHHccCCcccC-CEeEEEE
Confidence 48999999999985 44 699999998 33 33 457999999999999999999999999 88 9999999
Q ss_pred ecCCcccc
Q psy17775 138 YSKQVFLS 145 (211)
Q Consensus 138 ~SK~~~i~ 145 (211)
+++.....
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99776543
No 126
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=7.1e-09 Score=75.50 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=57.7
Q ss_pred ccCCCCC-CCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPP-AFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~-~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.|||. .++.+.| |. .|+.|++.+ |+|||+|.+.++|+.|+..|+|..|. |++|+|.+
T Consensus 14 ~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~-------------g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~ 79 (96)
T 2kvi_A 14 FIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN-------------AFGFIQFDNPQSVRDAIECESQEMNF-GKKLILEV 79 (96)
T ss_dssp EEESSTTSCCCHHHHHHHHTTTCCCCEEEEET-------------TEEEEEESCHHHHHHHHHHHTCSSCB-TTTBCEEE
T ss_pred EEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC-------------CEEEEEECCHHHHHHHHHHcCCCeeC-CcEEEEEE
Confidence 3889998 9999986 55 888888855 89999999999999999999999999 99999999
Q ss_pred cCCccc
Q psy17775 139 SKQVFL 144 (211)
Q Consensus 139 SK~~~i 144 (211)
++....
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987654
No 127
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.75 E-value=5.4e-09 Score=81.58 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=63.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +.-++ ..+|.|||+|.+.++|+.||..|+|..|. |++|+|.++
T Consensus 51 ~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~~~g---~~~G~afV~F~~~~~A~~Ai~~l~g~~i~-g~~l~V~~a 124 (135)
T 2lea_A 51 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR--DRYTK---ESRGFAFVRFHDKRDAEDAMDAMDGAVLD-GRELRVQMA 124 (135)
T ss_dssp EEECCCSSCHHHHHHHHHGGGSCCSEEECCC--CSSSS---SCCSCCEEECSCHHHHHHHHTTTTTCCSS-SSCCEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe--cCCCC---ccceEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEEC
Confidence 48999999999986 55 899999987 33333 45799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+...-.
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875543
No 128
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.7e-08 Score=74.22 Aligned_cols=73 Identities=16% Similarity=0.065 Sum_probs=61.0
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCC-CCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMS-GPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~-~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. -|+.|++++ +..+ + ..+|.|||+|.+.+.|+.|| .|+|..|. |++|+|.++
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~--~~~~~g---~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~~l~V~~a 91 (104)
T 1wi8_A 19 FLGNLPYDVTEESIKEFFRGLNISAVRLPR--EPSNPE---RLKGFGYAEFEDLDSLLSAL-SLNEESLG-NKRIRVDVA 91 (104)
T ss_dssp EEESCCSSCCHHHHHHHTTTSCEEEEECCB--CSSCTT---SBCSCEEEEESSHHHHHHHH-GGGTCEET-TEECEEEEC
T ss_pred EEeCCCCcCCHHHHHHHHHHCCceEEEEec--CCCCCC---CcCeEEEEEECCHHHHHHHH-hcCCCEeC-CcEEEEEEc
Confidence 38999999999985 55 589999987 3222 2 34799999999999999999 99999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+...-.
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 129
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.74 E-value=3.3e-09 Score=78.28 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=58.6
Q ss_pred ccCCCCC------CCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC-c
Q psy17775 66 DYYGAPP------AFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG-K 132 (211)
Q Consensus 66 ~v~nl~~------~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G-k 132 (211)
.|.|||. .++.+.| |. .|..|++++ +.-+| ..+|.|||+|.+..+|+.||..|+|..|. | +
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~--d~~tg---~~kG~afV~f~~~~~A~~Ai~~lng~~~~-g~r 83 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPI--DEATG---KTKGFLFVECGSMNDAKKIIKSFHGKRLD-LKH 83 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCE--ETTTT---EECSEEEEEESSHHHHHHHHHHHTTCBSS-SSC
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEE--cCCCC---ccceEEEEEECCHHHHHHHHHHhCCcccC-CCe
Confidence 3789987 6666664 65 999999998 33333 45799999999999999999999999999 9 9
Q ss_pred eeEEeecCC
Q psy17775 133 RLAVAYSKQ 141 (211)
Q Consensus 133 ~L~V~~SK~ 141 (211)
+|+|.+++.
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 130
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.74 E-value=8.7e-09 Score=82.69 Aligned_cols=74 Identities=18% Similarity=0.089 Sum_probs=64.4
Q ss_pred ccCCCCCCCccccc---c---c--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---Y---N--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---F---n--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
.|.||+..++.+.| | . .|+.|++++ ++.+| ..+|.|||+|.+.++|+.||..|+|..|. |++|+|.
T Consensus 59 fVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~--d~~tg---~skGfaFV~f~~~~~A~~Ai~~lng~~~~-Gr~l~V~ 132 (156)
T 3n9u_C 59 YVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE--NRANG---QSKGYAEVVVASENSVHKLLELLPGKVLN-GEKVDVR 132 (156)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEE--CTTTC---CEEEEEEEEESCHHHHHHHHHHSTTCEET-TEECEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEe--cCCCC---ccceEEEEEECCHHHHHHHHHHcCCCEEC-CeEeEEE
Confidence 48999999999986 4 4 799999998 55555 45799999999999999999999999999 9999999
Q ss_pred ecCCcccc
Q psy17775 138 YSKQVFLS 145 (211)
Q Consensus 138 ~SK~~~i~ 145 (211)
+++...+.
T Consensus 133 ~a~~~~~~ 140 (156)
T 3n9u_C 133 PATRQNLS 140 (156)
T ss_dssp ECCHHHHH
T ss_pred EcCCCcch
Confidence 99876654
No 131
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.73 E-value=7e-09 Score=78.38 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=60.0
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++.+.| |. .|+.|++++ +..+| ..+|+|||+|.+.++|+.|| .|+|..|. |++|+|.+++
T Consensus 41 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~~l~V~~a~ 113 (124)
T 2jwn_A 41 VGNVDYGSTAQDLEAHFSSCGSINRITILC--DKFSG---HPKGYAYIEFAERNSVDAAV-AMDETVFR-GRTIKVLPKR 113 (124)
T ss_dssp EEEECTTCCHHHHHHHHHTTSCEEEEEEEE--ECTTS---SCEEEEEEEESSHHHHHHHH-TTTTCEET-TEECEEEESS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEe--cCCCC---CcccEEEEEECCHHHHHHHH-hcCCCeEC-CeEEEEEECC
Confidence 8999999999986 55 899999988 33333 44799999999999999999 89999999 9999999998
Q ss_pred Ccc
Q psy17775 141 QVF 143 (211)
Q Consensus 141 ~~~ 143 (211)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 132
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.5e-08 Score=75.79 Aligned_cols=73 Identities=14% Similarity=-0.005 Sum_probs=62.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|+|||+|.+..+|+.||.. +|..|. |++|+|.++
T Consensus 31 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~a~~Ai~~-~~~~~~-g~~l~V~~a 103 (116)
T 1x4b_A 31 FIGGLSFETTEESLRNYYEQWGKLTDCVVMR--DPASK---RSRGFGFVTFSSMAEVDAAMAA-RPHSID-GRVVEPKRA 103 (116)
T ss_dssp EEECCTTCCCHHHHHHHHTSSCCCSEEEEEC--CTTTS---SCCSEEEEECSSHHHHHHHHTS-CSEEET-TEEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE--CCCCC---CcCceEEEEeCCHHHHHHHHHh-CCcEEC-CEEEEEEEC
Confidence 38999999999985 55 999999998 43344 4579999999999999999998 999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 876554
No 133
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.3e-08 Score=78.20 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=60.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ +.-+| ..+|.|+|+|.+.++|+.|+..|+|..|. |++|+|.||
T Consensus 91 ~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a 164 (166)
T 3md3_A 91 FVGDLNVNVDDETLRNAFKDFPSYLSGHVMW--DMQTG---SSRGYGFVSFTSQDDAQNAMDSMQGQDLN-GRPLRINWA 164 (166)
T ss_dssp EEESCCTTCCHHHHHHHHTTSTTEEEEEEEE--CTTTC---CEEEEEEEEESCHHHHHHHHHHHTTCEET-TEECEEEES
T ss_pred EECCCCCCCCHHHHHHHHhccCCeeEEEEEe--cCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCccC-CcEEEEEec
Confidence 48999999999986 44 999999997 32233 34789999999999999999999999999 999999999
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
+.
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 134
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=9.7e-09 Score=73.91 Aligned_cols=68 Identities=26% Similarity=0.269 Sum_probs=56.4
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCC-ceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSK-TLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g-~~Lf~Gk~L~V~~ 138 (211)
.|.||+..++.+.| |. .|+...++. . +|+|||+|.+.++|+.|+..|+| ..|. |++|+|.+
T Consensus 12 ~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------~-~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~l~v~~ 79 (93)
T 2cqh_A 12 YIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------K-SGYAFVDYPDQNWAIRAIETLSGKVELH-GKIMEVDY 79 (93)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------E-TTEEEECCSCHHHHHHHHHHHTTTCEET-TEECEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------C-CCEEEEEECCHHHHHHHHHHccCCeeEC-CEEEEEEE
Confidence 48999999999986 55 634444445 2 79999999999999999999999 9999 99999999
Q ss_pred cCCcccc
Q psy17775 139 SKQVFLS 145 (211)
Q Consensus 139 SK~~~i~ 145 (211)
++.....
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9876543
No 135
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.72 E-value=1.4e-08 Score=85.90 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=60.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|++|+++. .++|.|||+|.+.++|+.|+..|+|..|.+|++|+|+|+
T Consensus 211 ~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~----------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 211 FLTNLPEETNELMLSMLFNQFPGFKEVRLVP----------GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred EEeCCCCcCCHHHHHHHHHhcCCeEEEEEec----------CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 38999999999986 55 999999998 777999999999999999999999999887999999999
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
|.
T Consensus 281 kk 282 (282)
T 3pgw_A 281 KK 282 (282)
T ss_pred cC
Confidence 84
No 136
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.4e-08 Score=74.93 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=61.4
Q ss_pred ccCCCCCCCccccc---cc---c-ceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhC--CceecCCceeEE
Q psy17775 66 DYYGAPPAFEFERS---YN---S-PVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLS--KTLLCNGKRLAV 136 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---n-V~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~--g~~Lf~Gk~L~V 136 (211)
.|.||+..++.+.| |. . |+.|+++.+ +..+| ..+|.|||+|.+.++|+.|+..|+ +..|. |++|+|
T Consensus 12 ~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~-~~~~g---~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~-g~~l~V 86 (109)
T 2dis_A 12 FIGGIPKMKKREEILEEIAKVTEGVLDVIVYAS-AADKM---KNRGFAFVEYESHRAAAMARRKLMPGRIQLW-GHQIAV 86 (109)
T ss_dssp EEECCCTTSCHHHHHHHHHHHSTTEEEEECCSS-SCTTT---TTCCEEEEEESSHHHHHHHHTTTTTCCSCBT-TBCCEE
T ss_pred EEeCCCCcCCHHHHHHHHHHhcCCceEEEEEcc-CCCCC---CcCcEEEEEecCHHHHHHHHHHhhCCCceec-CCeEEE
Confidence 38899999999986 55 5 999999831 33333 457999999999999999999996 58888 999999
Q ss_pred eecCCcccc
Q psy17775 137 AYSKQVFLS 145 (211)
Q Consensus 137 ~~SK~~~i~ 145 (211)
.+++.....
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999876554
No 137
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=9.1e-09 Score=75.63 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=61.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|.|||+|.+.++|+.||.. +|..|. |++|+|.++
T Consensus 20 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~--~~~~g---~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~l~V~~a 92 (105)
T 2dh8_A 20 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMK--DKTTN---QSRGFGFVKFKDPNCVGTVLAS-RPHTLD-GRNIDPKPC 92 (105)
T ss_dssp CCBSCCTTCCHHHHHHHHHTTSCEEEEEEEE--CSSSC---CEEEEEEEEESSTTHHHHHHHH-CSEEET-TEEEBCCCS
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEee--CCCCC---CcceEEEEEECCHHHHHHHHHh-CCCeEC-CEEEEEEEc
Confidence 48999999999986 55 999999998 33333 3468999999999999999999 999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 876554
No 138
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.71 E-value=1.3e-08 Score=81.23 Aligned_cols=73 Identities=11% Similarity=-0.024 Sum_probs=62.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++ +..+| ..+|+|||+|.+...|+.||..|+|..|. |++|.|.++
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a 149 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL--DRRTG---FSKGYALVEYETHKQALAAKEALNGAEIM-GQTIQVDWC 149 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEE--CTTTS---SEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEES
T ss_pred EEeCCCCCCCHHHHHHHhhcCCCEEEEEEEe--cCCCC---cEeeEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEEe
Confidence 48999999999986 55 999999998 33333 34799999999999999999999999999 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+...-
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 87554
No 139
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.68 E-value=8.5e-09 Score=79.38 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=61.4
Q ss_pred ccCCCCCCCccccc---cc---cceE--eeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCc----eecCCce
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVL--DKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKT----LLCNGKR 133 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~r--vK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~----~Lf~Gk~ 133 (211)
.|.||+..++.+.| |. .|.. |++++ ++.+| ..+|.|||+|.+. .|+.||..|+|. .|. |++
T Consensus 27 fV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~--d~~tg---~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~-gr~ 99 (131)
T 2m2b_A 27 ILRNLNPHSTMDSILGALAPYAVLSSSNVRVIK--DKQTQ---LNRGFAFIQLSTI-EAAQLLQILQALHPPLTID-GKT 99 (131)
T ss_dssp EECSCCTTCCSHHHHHHHGGGCCCCTTTEECCB--CSSSS---SBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG-GCC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEE--cCCCC---CcceEEEEEECCH-HHHHHHHHhcCCCCCccCC-CEE
Confidence 48999999999985 55 8866 89988 55555 5589999999999 999999999999 999 999
Q ss_pred eEEeecCCcc
Q psy17775 134 LAVAYSKQVF 143 (211)
Q Consensus 134 L~V~~SK~~~ 143 (211)
|+|.+++...
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 140
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.68 E-value=2e-08 Score=80.88 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=63.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..+| ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.|+
T Consensus 129 ~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~--~~~~g---~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~i~V~~a 202 (216)
T 2qfj_A 129 YVASVHQDLSDDDIKSVFEAFGKIKSATLAR--DPTTG---KHKGYGFIEYEKAQSSQDAVSSMNLFDLG-GQYLRVGKA 202 (216)
T ss_dssp EEECCCTTCCHHHHHHHHTTSSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCBCS-SSBCEEEEC
T ss_pred EEeCCCCcCCHHHHHHHHhccCCeeEEEEEe--cCCCC---CcCceEEEEecCHHHHHHHHHHccCCEeC-CcEEEEEEe
Confidence 38899999999986 55 899999998 32233 34799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 987543
No 141
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=2.7e-08 Score=74.05 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=58.3
Q ss_pred ccCCCCCCCccccc---cc---cc----eEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 66 DYYGAPPAFEFERS---YN---SP----VLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV----~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
.|.||+..++.+.| |. .| +.+++.. + ..+|+|||+|.+.++|+.||..|+|..|. |++|+
T Consensus 29 ~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~------g---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~ 98 (115)
T 2cpx_A 29 YLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT------G---RMRGQAFITFPNKEIAWQALHLVNGYKLY-GKILV 98 (115)
T ss_dssp EEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC------S---SSCSEEEEECSSHHHHHHHHHHSTTCBCS-SCBCE
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC------C---ccceEEEEEECCHHHHHHHHHHhCCCEeC-CcEEE
Confidence 48999999999985 65 55 4555543 1 45799999999999999999999999999 99999
Q ss_pred EeecCCcccc
Q psy17775 136 VAYSKQVFLS 145 (211)
Q Consensus 136 V~~SK~~~i~ 145 (211)
|.+++...-.
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9999886654
No 142
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=1.9e-08 Score=69.46 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=55.9
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|.|||..++.+.| |. .|..|++++ +..+| ..+|.|+|+|.+.++|+.|+..++ ..|. |++|+|.++
T Consensus 5 v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~a~~~~~-~~~~-g~~l~v~~a 76 (77)
T 1uaw_A 5 IGGLSWQTTQEGLREYFGQFGEVKECLVMR--DPLTK---RSRGFGFVTFMDQAGVDKVLAQSR-HELD-SKTIDPKVA 76 (77)
T ss_dssp EESCCSSCCSHHHHHHHTTTSCCCCEEEEC--CCCSS---SCSSEEEECCCCTTHHHHHHHTTT-CCCS-SCCCEEEEC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEec--CCCCC---CcCceEEEEEcCHHHHHHHHHhCC-CccC-CEEEEEEec
Confidence 6799999999875 55 899999988 33333 447999999999999999999999 8888 999999875
No 143
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.67 E-value=1.6e-08 Score=75.08 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=56.2
Q ss_pred ccCCCCCCCc------ccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCc-
Q psy17775 66 DYYGAPPAFE------FER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGK- 132 (211)
Q Consensus 66 ~v~nl~~~i~------~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk- 132 (211)
.|.|||..++ .+. +|. .|+.|++++ ..| ..+|.|||+|.+..+|+.||..|+|..|. |+
T Consensus 19 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~g------~~~G~afV~f~~~~~A~~Ai~~l~g~~~~-g~~ 90 (105)
T 2nlw_A 19 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDG------KTKGYIFLEYASPAHAVDAVKNADGYKLD-KQH 90 (105)
T ss_dssp EEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-BTT------BSCCEEEEEECSSSHHHHHHHHCSSEECS-TTC
T ss_pred EEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-CCC------CeeeEEEEEECCHHHHHHHHHHhCCcccC-CCc
Confidence 3889998773 344 566 899999884 222 45799999999999999999999999999 99
Q ss_pred eeEEeecCC
Q psy17775 133 RLAVAYSKQ 141 (211)
Q Consensus 133 ~L~V~~SK~ 141 (211)
+|+|.+++.
T Consensus 91 ~l~V~~a~~ 99 (105)
T 2nlw_A 91 TFRVNLFTD 99 (105)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEcch
Confidence 999998864
No 144
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.65 E-value=2.8e-08 Score=73.81 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=56.9
Q ss_pred ccCCCCCC-Cccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPA-FEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~-i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.||+.. ++.+.| |. .|+.|++ . +|.|||+|.+.++|+.|+..|+|..|. |++|+|.+
T Consensus 31 ~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-~------------~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~ 96 (110)
T 1wf1_A 31 FIGNLNTALVKKSDVETIFSKYGRVAGCSV-H------------KGYAFVQYSNERHARAAVLGENGRVLA-GQTLDINM 96 (110)
T ss_dssp EECSCCCSSCCHHHHHHHHGGGSCCSEEEE-E------------TTEEEEECSSSHHHHHHHHHHTTCEET-TEECCEEE
T ss_pred EEeCCCcccCCHHHHHHHHHhCCCeEEEEE-e------------CCEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEE
Confidence 48999998 999885 55 8888888 3 499999999999999999999999999 99999999
Q ss_pred cCCcc
Q psy17775 139 SKQVF 143 (211)
Q Consensus 139 SK~~~ 143 (211)
++...
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98644
No 145
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.65 E-value=1.5e-08 Score=73.11 Aligned_cols=70 Identities=9% Similarity=0.160 Sum_probs=57.1
Q ss_pred ccCCCCCCCccccc---cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCc
Q psy17775 66 DYYGAPPAFEFERS---YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQV 142 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~ 142 (211)
.|.||+..++.+.| |..+-.|+++. ..+ ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.+++..
T Consensus 20 ~V~nL~~~~t~~~l~~~F~~~g~v~~~~-~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~~ 91 (96)
T 1fjc_A 20 LAKNLSFNITEDELKEVFEDALEIRLVS-QDG------KSKGIAYIEFKSEADAEKNLEEKQGAEID-GRSVSLYYTGEK 91 (96)
T ss_dssp EEESCCSSCCHHHHHHHHCSEEEECCEE-ETT------EEEEEEEEEESSHHHHHHHHHHTTEEEET-TEEEEEEECSSS
T ss_pred EEeCCCCCCCHHHHHHHHhhCCcEEEeC-CCC------CcceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEcCCC
Confidence 38999999998875 77555555552 111 34799999999999999999999999999 999999999765
Q ss_pred c
Q psy17775 143 F 143 (211)
Q Consensus 143 ~ 143 (211)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 146
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.64 E-value=5.2e-08 Score=72.94 Aligned_cols=71 Identities=10% Similarity=-0.009 Sum_probs=59.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..+| ..+|+|||+|.+.+.|+.||..+ |..|. |++|+|.++
T Consensus 29 fV~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~~tg---~~kg~afV~f~~~~~A~~Ai~~~-~~~l~-g~~l~V~~a 101 (109)
T 2rs2_A 29 FIGGLSWQTTQEGLREYFGQFGEVKECLVMR--DPLTK---RSRGFGFVTFMDQAGVDKVLAQS-RHELD-SKTIDPKVA 101 (109)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEECC--CTTTC---CCTTCEEEEESSHHHHHHHHHSS-CEEET-TEEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHccCCeEEEEEEE--CCCCC---CcCcEEEEEECCHHHHHHHHHHC-CCcCC-CEEEEEEEc
Confidence 48999999999885 55 999999998 33334 45799999999999999999987 57777 999999999
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
+...
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 147
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=5.7e-08 Score=70.61 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=55.5
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|| .++.+.| |. .|+.|++.+ . +|+|||+|.+..+|+.||..|+|..|. |++|+|.+++
T Consensus 20 V~n~--~~t~~~l~~~F~~~G~i~~v~i~~----------~-~g~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~v~~a~ 85 (97)
T 1x5p_A 20 VYGE--DMTPTLLRGAFSPFGNIIDLSMDP----------P-RNCAFVTYEKMESADQAVAELNGTQVE-SVQLKVNIAR 85 (97)
T ss_dssp EECS--SCCHHHHHHHHTTTSCEEEEEEET----------T-TTEEEEEESSHHHHHHHHHHTTTEEET-TEEEEEECCS
T ss_pred EcCC--CCCHHHHHHHHhhCCCEEEEEecC----------C-CCEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEECC
Confidence 5665 5666664 66 999999976 4 799999999999999999999999999 9999999998
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
.....
T Consensus 86 ~~~~~ 90 (97)
T 1x5p_A 86 KQPML 90 (97)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76544
No 148
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.62 E-value=3.6e-08 Score=69.90 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=55.9
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ +..+| ..+|+|||+|.+.++|+.|+. ++|..|. |++|+|.+|
T Consensus 15 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~~-~~~~~~~-g~~i~v~~A 87 (87)
T 3s7r_A 15 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DPNTG---RSRGFGFILFKDAASVEKVLD-QKEHRLD-GRVIDPKKA 87 (87)
T ss_dssp EEECCCTTCCHHHHHHHHTTTSCEEEEEEEE--CTTTC---CEEEEEEEEESSTHHHHHHHH-SSCEEET-TEEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEEee--cCCCC---ccccEEEEEECCHHHHHHHHH-hCCCEEC-CEEEEEEeC
Confidence 38899999999986 55 999999998 33333 447999999999999999996 5888888 999999875
No 149
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.62 E-value=4.6e-08 Score=79.83 Aligned_cols=73 Identities=12% Similarity=-0.008 Sum_probs=63.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|+++. +. ++ ..+|+|||+|.+.+.|+.||..|+|..|. |++|+|.+|
T Consensus 92 ~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~--d~-~g---~~kG~afV~F~~~~~A~~Ai~~lng~~l~-Gr~l~V~~a 164 (177)
T 2f3j_A 92 LVSNLDFGVSDADIQELFAEFGTLKKAAVDY--DR-SG---RSLGTADVHFERRADALKAMKQYKGVPLD-GRPMDIQLV 164 (177)
T ss_dssp EEECCCSCCCHHHHHHHHHHTSCCSEEEECC--CT-TS---SCSCCEEEEESCHHHHHHHHHHSTTCBCS-SSBCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CC-CC---CEeeEEEEEeCCHHHHHHHHHHhCCCEEC-CEEEEEEEe
Confidence 48999999999885 55 999999988 22 33 45799999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
......
T Consensus 165 ~~~~~~ 170 (177)
T 2f3j_A 165 ASQIDL 170 (177)
T ss_dssp SSGGGG
T ss_pred cCCCCC
Confidence 887665
No 150
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.62 E-value=2.3e-08 Score=68.88 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=55.8
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
|.|||..++.+.| |. .|..|++++ +..+| ..+|.|||+|.+.+.|+.|+.. +|..|. |++|+|.+|
T Consensus 4 v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~---~~~g~afV~f~~~~~a~~Ai~~-~~~~~~-g~~l~v~~a 75 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFGGFGEVESIELPM--DNKTN---KRRGFCFITFKEEEPVKKIMEK-KYHNVG-LSKCEIKVA 75 (75)
T ss_dssp ESCCCSSCCHHHHHHHHHHHSCCSEECCCC--SCCCS---SSCCCEEEECSSSHHHHHHHTT-SSCCBT-TBCCCEEEC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEe--cCCCC---CcCCEEEEEECCHHHHHHHHHh-CCCeEC-CEEEEEEEC
Confidence 6799999999986 55 899999987 44444 4579999999999999999985 899988 999999875
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.62 E-value=2.6e-08 Score=81.92 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=60.7
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++.+.| |. .|+.|++++..+ ..+|.|||+|.+.++|+.||+.|+|..|. |++|+|.+++
T Consensus 108 v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-------~~~g~~fV~f~~~~~a~~Ai~~lng~~~~-g~~i~V~~a~ 179 (213)
T 4f02_A 108 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------GSKGYGFVHFETQEAAERAIEKMNGMLLN-DRKVFVGRFK 179 (213)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------EEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEECC
T ss_pred ECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-------CCceEEEEEeCCHHHHHHHHHHhCCCEEC-CEEEEEEEcC
Confidence 8999999999986 55 999999998322 23799999999999999999999999999 9999999997
Q ss_pred Cccc
Q psy17775 141 QVFL 144 (211)
Q Consensus 141 ~~~i 144 (211)
....
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 6543
No 152
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=4.1e-08 Score=71.40 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=56.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|. ++++.. ..+|.|||+|.+...|+.|+..|+|..|. |++|+|.++
T Consensus 23 ~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a 91 (97)
T 2e5j_A 23 YVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------GPRRRAFLHYPDSAAAQQAVSCLQGLRLG-TDTLRVALA 91 (97)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCCSS-SSCCEEEEC
T ss_pred EEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------CCCcEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEEc
Confidence 48999999999986 55 665 566541 34799999999999999999999999999 999999999
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
+..
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 153
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.61 E-value=4.7e-08 Score=74.75 Aligned_cols=67 Identities=9% Similarity=0.112 Sum_probs=57.7
Q ss_pred ccCCCCCCCccccc---cc----cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN----SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn----nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.||+..++.+.| |. .|..|++..+ ..+|.|||+|.+.+.|+.||+.|+|..|. |++|+|.+
T Consensus 32 ~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---------~~rGfaFV~F~~~e~A~~Ai~~lng~~l~-Gr~i~V~~ 101 (111)
T 2jvr_A 32 TMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---------DFDGTGALEFPSEEILVEALERLNNIEFR-GSVITVER 101 (111)
T ss_dssp EEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---------SSSCCEEEEESSHHHHHHHHHHTTTEEET-TEEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---------CCCCEEEEEECCHHHHHHHHHHcCCCEEC-CeEEEEEE
Confidence 48999999999986 54 6888888631 34799999999999999999999999999 99999999
Q ss_pred cCCc
Q psy17775 139 SKQV 142 (211)
Q Consensus 139 SK~~ 142 (211)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8753
No 154
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.60 E-value=2.5e-08 Score=84.51 Aligned_cols=74 Identities=23% Similarity=0.186 Sum_probs=64.4
Q ss_pred ccCCCCCCCccccc---c---c--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---Y---N--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---F---n--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~ 137 (211)
.|.||+..++.+.| | . .|+.|+|++ ++.++ ..+|+|||+|.+.+.|+.||..|+|..|. |++|+|.
T Consensus 72 fVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~--d~~tg---~skGfaFV~f~~~~~a~~Ai~~lng~~~~-Gr~l~V~ 145 (229)
T 3q2s_C 72 YIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE--NRANG---QSKGFALVGVGSEASSKKLMDLLPKRELH-GQNPVVT 145 (229)
T ss_dssp EEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEE--CTTTC---CEEEEEEEEESCTTHHHHHHTTSTTSCBT-TBCCEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEe--cCCCC---ccceEEEEEECCHHHHHHHHHHcCCCeEC-CEEeEEE
Confidence 48999999999986 4 4 699999998 55555 56799999999999999999999999999 9999999
Q ss_pred ecCCcccc
Q psy17775 138 YSKQVFLS 145 (211)
Q Consensus 138 ~SK~~~i~ 145 (211)
+++...+.
T Consensus 146 ~a~~~~~~ 153 (229)
T 3q2s_C 146 PVNKQFLS 153 (229)
T ss_dssp ECCHHHHH
T ss_pred ECCCCccc
Confidence 99876543
No 155
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.60 E-value=7.3e-08 Score=75.46 Aligned_cols=83 Identities=10% Similarity=0.025 Sum_probs=55.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCC
Q psy17775 103 EGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRI 182 (211)
Q Consensus 103 ~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i 182 (211)
+|+|||+|.+...|+.|+..+++.... +..+.+.......... ...........
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~~-~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 66 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNGV-DGEWTYDDATKTFTVT-------------------------EGSHHHHHHMD 66 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHTC-CCEEEEETTTTEEEEE-------------------------CCCCCSSCCCC
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCCC-CCcccccCcccccccc-------------------------ccccccccccC
Confidence 699999999999999999999876666 3333332111111100 00000011123
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++||++|.++|+++|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 95 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYG 95 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999887
No 156
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.59 E-value=1.6e-08 Score=71.28 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=51.2
Q ss_pred cCCCCCCC------cccc---ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCc-e
Q psy17775 67 YYGAPPAF------EFER---SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGK-R 133 (211)
Q Consensus 67 v~nl~~~i------~~d~---LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk-~ 133 (211)
|.|||..+ +.+. +|. .|..|++.+ ..| ..+|.|||+|.+..+|+.|+..|+|..|. |+ +
T Consensus 6 V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g------~~~g~afV~f~~~~~A~~Ai~~lng~~~~-g~~~ 77 (81)
T 2krb_A 6 VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDG------KTKGYIFLEYASPAHAVDAVKNADGYKLD-KQHT 77 (81)
T ss_dssp EESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-BTT------BCCCEEEEEESSHHHHHHHHTTSSSCCCS-SSSC
T ss_pred EeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-CCC------cEeEEEEEEECCHHHHHHHHHHhcCcccC-Ccee
Confidence 67888877 3354 466 899999874 222 45799999999999999999999999999 99 8
Q ss_pred eEEe
Q psy17775 134 LAVA 137 (211)
Q Consensus 134 L~V~ 137 (211)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8874
No 157
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.59 E-value=6.1e-08 Score=73.21 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=54.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ . |.|||+|.+.++|+.||..|+|..|. |++|+|.|.
T Consensus 20 ~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~----------~--g~afV~f~~~~~a~~Ai~~l~g~~~~-gr~~~~~~i 86 (115)
T 3beg_B 20 VVSGLPPSGSWQDLKDHMREAGDVCYADVYR----------D--GTGVVEFVRKEDMTYAVRKLDNTKFR-SHEGETAYI 86 (115)
T ss_dssp EEEECCSSCCTTHHHHHHGGGSCEEEEEECT----------T--SEEEEEESSHHHHHHHHHHHTTCBCC-CTTSCCCBC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEec----------C--CEEEEEECCHHHHHHHHHHhCCCEEC-CcEeeeEEE
Confidence 48999999999986 55 999999988 4 99999999999999999999999999 999554444
Q ss_pred C
Q psy17775 140 K 140 (211)
Q Consensus 140 K 140 (211)
+
T Consensus 87 ~ 87 (115)
T 3beg_B 87 R 87 (115)
T ss_dssp E
T ss_pred E
Confidence 3
No 158
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=6.6e-08 Score=70.71 Aligned_cols=72 Identities=10% Similarity=0.113 Sum_probs=59.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +..++ ..+|+|||+|.+.+.|+.||. +++.|. |++|.|.++
T Consensus 19 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~~--~~~~~~-g~~l~v~~a 90 (103)
T 2cqg_A 19 IVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK--DLKTG---HSKGFGFVRFTEYETQVKVMS--QRHMID-GRWCDCKLP 90 (103)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCEEEEEEEE--CSSSC---SEEEEEEEEESSHHHHHHHHH--SCEEET-TEEEEEECC
T ss_pred EEEcCCCcCCHHHHHHHHHhcCCeEEEEEEe--cCCCC---CccceEEEEECCHHHHHHHHH--cCCeeC-CeEEEEEec
Confidence 48999999999885 55 999999998 33233 446899999999999999999 477888 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 886554
No 159
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=4.4e-08 Score=73.62 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=60.8
Q ss_pred ccCCCCCCCccccc---cc---cc-eEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SP-VLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV-~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.|||..++.+.| |. .| ..|++++ +. +| ..+|.|||+|.+.++|+.||.. +|..|. |++|+|.+
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~--d~-~g---~~~G~afV~F~~~~~a~~Al~~-~~~~~~-gr~i~v~~ 90 (114)
T 2cpy_A 19 HITNIPFSITKMDVLQFLEGIPVDENAVHVLV--DN-NG---QGLGQALVQFKNEDDARKSERL-HRKKLN-GREAFVHV 90 (114)
T ss_dssp EEESCCTTSCHHHHHHHTTTSCCCSTTEEECC--CT-TS---SCSSCEEEECSSHHHHHHHGGG-CSEEET-TEEEEEEE
T ss_pred EEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEE--CC-CC---CcceEEEEEECCHHHHHHHHHh-CCCccC-CeEEEEEE
Confidence 38899999999875 66 67 7799987 33 34 4589999999999999999988 999999 99999999
Q ss_pred cCCcccc
Q psy17775 139 SKQVFLS 145 (211)
Q Consensus 139 SK~~~i~ 145 (211)
++.....
T Consensus 91 a~~~~~~ 97 (114)
T 2cpy_A 91 VTLEDMR 97 (114)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9876643
No 160
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=6e-08 Score=69.94 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=57.3
Q ss_pred ccCCCCCCCccccc---cc---cceEee-EecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDK-FIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK-~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.|||..++.+.| |. .|..|+ +++ + ...|.|||+|.+...|+.|+..|+|..|. |++|+|.+
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~--~-------~~~~~afV~f~~~~~a~~Ai~~l~g~~~~-g~~l~V~~ 88 (96)
T 2e44_A 19 QIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT--D-------SETAVVNVTYSSKDQARQALDKLNGFQLE-NFTLKVAY 88 (96)
T ss_dssp EEEEECSSSCHHHHHHHHHHHSCEEEEEEECC--S-------SSSEEEEEEESSHHHHHHHHHHHTTCBCS-SCBCEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec--C-------CCCCEEEEEECCHHHHHHHHHHhCCCEEC-CcEEEEEE
Confidence 48999999999875 55 899995 666 1 12344999999999999999999999999 99999999
Q ss_pred cCCcc
Q psy17775 139 SKQVF 143 (211)
Q Consensus 139 SK~~~ 143 (211)
++...
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 161
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=4.6e-08 Score=73.23 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=58.1
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|||..++.+.| |. .|+.|++++... | ..+|.|||+|.+.++|+.||. ++|..|. |++|.|.+++
T Consensus 16 V~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~---g---~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~-gr~l~V~~~~ 87 (103)
T 1s79_A 16 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH---K---AFKGSIFVVFDSIESAKKFVE-TPGQKYK-ETDLLILFKD 87 (103)
T ss_dssp EECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT---T---SCCCEEEEEESSHHHHHHHHT-SSCCCCT-TTTCEEEEHH
T ss_pred EECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC---C---CCccEEEEEECCHHHHHHHHH-cCCCEEC-CEEEEEEEch
Confidence 8899999999986 55 999999998332 2 458999999999999999999 9999998 9999999766
Q ss_pred C
Q psy17775 141 Q 141 (211)
Q Consensus 141 ~ 141 (211)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.57 E-value=4.6e-08 Score=76.07 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=58.6
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..|++++ +.-+| ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.+|
T Consensus 98 ~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~--~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~A 171 (172)
T 2g4b_A 98 FIGGLPNYLNDDQVKELLTSFGPLKAFNLVK--DSATG---LSKGYAFCEYVDINVTDQAIAGLNGMQLG-DKKLLVQRA 171 (172)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEEEEE--CTTTC---SEEEEEEEEESSTTHHHHHHHHHTTCEET-TEECEEEEC
T ss_pred EEEcCCCcCCHHHHHHHHHhcCCceEEEEEe--cCCCC---CcceEEEEEeCCHHHHHHHHHHcCCCEEC-CeEEEEEeC
Confidence 48999999999886 44 999999998 22222 34799999999999999999999999999 999999987
No 163
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.99 E-value=6.9e-09 Score=77.89 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=60.8
Q ss_pred ccCCCCCCCccccc---cc---cceE--------eeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVL--------DKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG 131 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~r--------vK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G 131 (211)
.|.||+..++.+.| |. .|.. |++++ +..++ ..+|.|||+|.+.++|+.||..|+|..|. |
T Consensus 11 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~--~~~~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g 84 (116)
T 2lcw_A 11 FVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT--DRETG---KLKGEATVSFDDPPSAKAAIDWFDGKEFS-G 84 (116)
Confidence 38899998888875 66 7777 78877 32223 44799999999999999999999999999 9
Q ss_pred ceeEEeecCCcccc
Q psy17775 132 KRLAVAYSKQVFLS 145 (211)
Q Consensus 132 k~L~V~~SK~~~i~ 145 (211)
++|+|.+++.....
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876543
No 164
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.56 E-value=6.2e-08 Score=75.19 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=58.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~ 137 (211)
.|.|||..++.+.| |. .|.+|++++.+++ ..+|.|||+|.+.++|++|+..|+|..+++| ++|+|.
T Consensus 99 ~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 99 FIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG------LSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTS------CEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred EEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCC------CEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 38899999999986 55 9999999994333 3468999999999999999999999999843 899999
Q ss_pred ec
Q psy17775 138 YS 139 (211)
Q Consensus 138 ~S 139 (211)
|+
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 165
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.55 E-value=4.1e-08 Score=74.62 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=60.3
Q ss_pred ccCCCCCCCccccc---cc---c---ceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEE
Q psy17775 66 DYYGAPPAFEFERS---YN---S---PVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---n---V~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V 136 (211)
.|.||+..++.+.| |. . |..|++++..++ ..+|.|||+|.+.+.|+.||. |+|..|. |+.|+|
T Consensus 21 ~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g------~~~G~afV~F~~~~~a~~Al~-~~g~~~~-gr~i~V 92 (118)
T 2db1_A 21 KLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREG------RQSGEAFVELESEDDVKLALK-KDRESMG-HRYIEV 92 (118)
T ss_dssp EEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSS------CEEEEEEEEBSSHHHHHHHGG-GTTEEET-TEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCC------CCCeEEEEEECCHHHHHHHHh-cCCCeEC-CeEEEE
Confidence 48999999999985 76 4 899999983332 457999999999999999999 9999999 999999
Q ss_pred eecCCccc
Q psy17775 137 AYSKQVFL 144 (211)
Q Consensus 137 ~~SK~~~i 144 (211)
.+|+....
T Consensus 93 ~~a~~~~~ 100 (118)
T 2db1_A 93 FKSHRTEM 100 (118)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99976553
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.55 E-value=6.2e-08 Score=74.89 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=57.8
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC--ceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG--KRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G--k~L~V~ 137 (211)
.|.|||..++.+.| |. .|..|++++ +..+| ..+|.|+|+|.+.++|+.|+..|+|..|. | ++|+|.
T Consensus 93 ~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~--~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~~~l~V~ 166 (168)
T 1b7f_A 93 YVTNLPRTITDDQLDTIFGKYGSIVQKNILR--DKLTG---RPRGVAFVRYNKREEAQEAISALNNVIPE-GGSQPLSVR 166 (168)
T ss_dssp EEESCCTTCCHHHHHHHHTSSSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCCCT-TCSSCCEEE
T ss_pred EEeCCCCCCCHHHHHHhhhcCCcEEEEEEEE--cCCCC---CcceEEEEEECCHHHHHHHHHHhcCCEec-CCCeEEEEE
Confidence 48999999999886 55 999999998 22222 33689999999999999999999999998 8 999999
Q ss_pred ec
Q psy17775 138 YS 139 (211)
Q Consensus 138 ~S 139 (211)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 167
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.53 E-value=9.3e-08 Score=76.68 Aligned_cols=67 Identities=24% Similarity=0.253 Sum_probs=59.5
Q ss_pred ccCCCCCCCccccc------cc-cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS------YN-SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L------Fn-nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.||+..++.+.| |. .|..|+++. ..+|.|||+|.+.++|+.|+..|+|..+..|++|+|.|
T Consensus 124 ~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~----------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 124 HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp EECCCCTTCCHHHHHHHHHHTTSCCCEEEESS----------TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe----------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 38999999998875 44 899999988 56899999999999999999999999986589999999
Q ss_pred cCCc
Q psy17775 139 SKQV 142 (211)
Q Consensus 139 SK~~ 142 (211)
++.+
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
No 168
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.53 E-value=1.5e-07 Score=73.68 Aligned_cols=69 Identities=9% Similarity=0.186 Sum_probs=57.2
Q ss_pred ccCCCCCCCccccc---cccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCc
Q psy17775 66 DYYGAPPAFEFERS---YNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQV 142 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---FnnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~ 142 (211)
.|.||+..++.+.| |..+-.|+++ +..+ ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.|++..
T Consensus 103 ~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~~k 174 (175)
T 1fje_B 103 LAKNLSFNITEDELKEVFEDALEIRLV-SQDG------KSKGIAYIEFKSEADAEKNLEEKQGAEID-GRSVSLYYTGEK 174 (175)
T ss_dssp EEESCCSSCCHHHHHHHCTTCSEEEEE-CSSS------SCCSEEEEECSSHHHHHHHHHHHTEEEET-TEEEEEEECSSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCC------CCceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEecCCC
Confidence 38999999998875 7755555555 2222 45799999999999999999999999999 999999999864
No 169
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.53 E-value=1e-07 Score=88.17 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=64.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..|+.+.| |. .|+.|+|+. +..+| ..+|+|||+|.+..+|+.||..|+|..|. |++|.|.++
T Consensus 106 fV~nL~~~~te~~L~~~F~~~G~I~~v~i~~--d~~tg---~~kG~aFV~F~~~e~A~~Ai~~lng~~i~-gr~i~V~~a 179 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFEVYGPIKRIHMVY--SKRSG---KPRGYAFIEYEHERDMHSAYKHADGKKID-GRRVLVDVE 179 (437)
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCeeEEEeec--cCCCC---CccceEEEeeccHHHHHHHHHHcCCCEEC-CEEEEEEEe
Confidence 48999999999886 55 999999987 33334 45899999999999999999999999999 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
+.....
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 976654
No 170
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=1.8e-07 Score=71.10 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=58.8
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
.|.|||..++.+.| |. .|+.|+|++..+ | ..+|.|||+|.+.+.|+.|| .|+|..|. |+.|+|..++
T Consensus 20 ~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~---g---~~~G~afV~F~~~~~a~~Al-~~~~~~~~-gr~i~V~~a~ 91 (109)
T 2dnn_A 20 SVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV---G---RNNGNGLVKFLSPQDTFEAL-KRNRMLMI-QRYVEVSPAT 91 (109)
T ss_dssp EEECCCSSCCHHHHHHHTTTSCCCEEEECCCTT---C---CCCSEEEEECSSHHHHHHHH-HTTTEEET-TEEEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHhccCCeeEEEEEECCC---C---CCCeEEEEEECCHHHHHHHH-hcCCCeEC-CeEEEEEECC
Confidence 48999999999875 66 889999998333 3 45799999999999999999 69999999 9999998876
Q ss_pred Cc
Q psy17775 141 QV 142 (211)
Q Consensus 141 ~~ 142 (211)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 171
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.52 E-value=7e-08 Score=76.68 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=61.0
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..|++++ +..+| ..+|.|||+|.+.++|+.|+..|+|..|. |++|+|.++
T Consensus 118 ~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~--~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a 191 (198)
T 2yh0_A 118 FIGGLPNYLNDDQVKELLTSFGPLKAFNLVK--DSATG---LSKGYAFCEYVDINVTDQAIAGLNGMQLG-DKKLLVQRA 191 (198)
T ss_dssp EEECCCTTCCHHHHHHHHHTBSCEEEEEEEE--CTTTC---SEEEEEEEEESSSSHHHHHHHHHTTCEET-TEECEEEES
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCccEEEEee--cCCCC---CcceEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEEC
Confidence 48999999999886 44 899999998 22222 33799999999999999999999999999 999999999
Q ss_pred CCcc
Q psy17775 140 KQVF 143 (211)
Q Consensus 140 K~~~ 143 (211)
+...
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
No 172
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.51 E-value=6.2e-08 Score=72.04 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=60.0
Q ss_pred ccCCCCCCCccccc---cc---c---ceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEE
Q psy17775 66 DYYGAPPAFEFERS---YN---S---PVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---n---V~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V 136 (211)
.|.||+..++.+.| |. . |..|++++..+ | ..+|.|||+|.+.++|+.||. |+|..|. |+.|+|
T Consensus 15 ~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~---g---~~~G~afV~F~~~~~a~~Al~-~~~~~~~-gr~i~V 86 (107)
T 2lmi_A 15 RAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD---G---KRRGDALIEMESEQDVQKALE-KHRMYMG-QRYVEV 86 (107)
T ss_dssp EEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT---S---TTCSEEEEEBSSHHHHHHHHT-TTTCCSS-SSCCCC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC---C---CEeeEEEEEECCHHHHHHHHH-hCcceeC-CeEEEE
Confidence 48999999999885 66 3 89999988333 2 457999999999999999999 9999988 999999
Q ss_pred eecCCccc
Q psy17775 137 AYSKQVFL 144 (211)
Q Consensus 137 ~~SK~~~i 144 (211)
.+++....
T Consensus 87 ~~a~~~~~ 94 (107)
T 2lmi_A 87 YEINNEDV 94 (107)
T ss_dssp EECCHHHH
T ss_pred EECCHHHH
Confidence 99886553
No 173
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.50 E-value=1.2e-07 Score=69.16 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=55.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|.. +++. +..+| ..+|.|||+|.+.++|+.||+ |+|..|. |++|+|.++
T Consensus 21 ~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~--~~~~g---~~~g~afV~f~~~~~a~~A~~-l~g~~~~-g~~l~V~~a 92 (101)
T 1fj7_A 21 FIGNLNPNKSVAELKVAISELFAKND-LAVV--DVRTG---TNRKFGYVDFESAEDLEKALE-LTGLKVF-GNEIKLEKP 92 (101)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHT-CCCC--EEEEE---TTTTEEEEEESSHHHHHHHHH-GGGCCBT-TBCCEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcce-EEEe--cCCCC---CcCcEEEEEECCHHHHHHHHh-cCCcEEC-CcEEEEEEc
Confidence 48999999999885 65 4443 2322 11111 457999999999999999999 9999999 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+....
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 174
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=3.6e-08 Score=74.98 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=57.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |. .|..+.++. +..+| ..+|.|||+|.+.+.|+.||. |+|..|. |+.|+|.++
T Consensus 29 ~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~--~~~~g---~~~G~afV~F~~~~~a~~Al~-~~g~~~~-gr~i~V~~a 101 (124)
T 1wel_A 29 YLKGLPFEAENKHVIDFFKKLDIVEDSIYIA--YGPNG---KATGEGFVEFRNEADYKAALC-RHKQYMG-NRFIQVHPI 101 (124)
T ss_dssp EEECCCTTCCHHHHHHHSCSSCBCTTTCEEE--ECTTS---SEEEEEEEEBSSSHHHHHHHT-SCSBCST-TSCBEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCccceEEEE--ECCCC---CCCeEEEEEECCHHHHHHHHH-hCCCeEC-CcEEEEEEC
Confidence 48999999999875 66 666644443 11122 447999999999999999999 9999999 999999999
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+....
T Consensus 102 ~~~~~ 106 (124)
T 1wel_A 102 TKKGM 106 (124)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87664
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.49 E-value=1.8e-07 Score=77.71 Aligned_cols=67 Identities=24% Similarity=0.253 Sum_probs=59.2
Q ss_pred ccCCCCCCCccccc------cc-cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS------YN-SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L------Fn-nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.||+..++.+.| |. .|..|+++. ..+|.|||+|.+.++|+.|+..|+|..|.+|++|+|.|
T Consensus 155 ~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~----------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 155 HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCCEEEEEECS----------SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred EEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE----------CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 48999999998875 44 889999988 56899999999999999999999999986589999999
Q ss_pred cCCc
Q psy17775 139 SKQV 142 (211)
Q Consensus 139 SK~~ 142 (211)
+|.+
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9864
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.48 E-value=7.4e-08 Score=74.55 Aligned_cols=69 Identities=9% Similarity=0.104 Sum_probs=58.9
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|||..++.+.| |. .|+.|++++ +.-+| ..+|.|||+|.+.++|+.|+. |+|..|. |++|+|.+++
T Consensus 92 V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~--~~~~g---~~~g~afV~f~~~~~a~~A~~-~~~~~~~-g~~i~V~~a~ 164 (167)
T 2cjk_A 92 VGGIGPDVRPKEFEEFFSQWGTIIDAQLML--DKDTG---QSRGFGFVTYDSADAVDRVCQ-NKFIDFK-DRKIEIKRAE 164 (167)
T ss_dssp EEEECTTCCHHHHHHHHHTTSCCSEEECCC--SSSSS---TTSEEEEEEESSHHHHHHHHH-CSEECSS-SSCEEEEECC
T ss_pred ECCCCCCCCHHHHHHHHHhCccEEEEEEEE--cCCCC---ccceEEEEEECCHHHHHHHHh-CCCEEeC-CeEEEEeecC
Confidence 8999999999886 44 999999988 32233 457999999999999999998 8999999 9999999997
Q ss_pred Cc
Q psy17775 141 QV 142 (211)
Q Consensus 141 ~~ 142 (211)
..
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 177
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.48 E-value=1.1e-07 Score=73.78 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=56.7
Q ss_pred ccCCCCCCCccccc---cc---cceE--------eeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVL--------DKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG 131 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~r--------vK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G 131 (211)
.|.||+..++.+.| |. .|.. |++.+ .+ ..+|+|||+|.+..+|+.||..|+|..|. |
T Consensus 49 ~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~--~g------~~~g~afV~f~~~~~A~~Ai~~lng~~~~-g 119 (143)
T 3egn_A 49 YVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK--EG------RMKGQAFIGLPNEKAAAKALKEANGYVLF-G 119 (143)
T ss_dssp EEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE--ET------TTEEEEEEECSSHHHHHHHHHHHTTBEET-T
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc--CC------CcccEEEEEeCCHHHHHHHHHHhCCCEeC-C
Confidence 48999999999985 66 5554 33332 11 34799999999999999999999999999 9
Q ss_pred ceeEEeecCCccc
Q psy17775 132 KRLAVAYSKQVFL 144 (211)
Q Consensus 132 k~L~V~~SK~~~i 144 (211)
++|.|.+++...-
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987543
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.47 E-value=1.8e-07 Score=65.95 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=51.8
Q ss_pred cCCCCCCCccccc---cc--------------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceec
Q psy17775 67 YYGAPPAFEFERS---YN--------------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLC 129 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn--------------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf 129 (211)
|.||+..++.+.| |+ .|..|++++ . +|.|||+|.+.++|+.|+ .|+|..|.
T Consensus 11 V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----------~-kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 11 VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----------D-KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----------S-SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred EeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----------C-CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 7899999988875 43 588888888 4 799999999999999999 99999999
Q ss_pred CCceeEEe
Q psy17775 130 NGKRLAVA 137 (211)
Q Consensus 130 ~Gk~L~V~ 137 (211)
|++|+|.
T Consensus 79 -g~~l~V~ 85 (87)
T 2hzc_A 79 -GQSLKIR 85 (87)
T ss_dssp -TEECEEE
T ss_pred -CeEEEEe
Confidence 9999986
No 179
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.47 E-value=1.4e-07 Score=72.47 Aligned_cols=68 Identities=15% Similarity=0.319 Sum_probs=56.3
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCce--eEEe
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKR--LAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~--L~V~ 137 (211)
.|.|||..++.+.| |. .|..|++++ +..+| ..+|.|+|+|.+.++|+.|+..|+|..|. |+. |+|.
T Consensus 92 ~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~--~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~~~i~v~ 165 (167)
T 1fxl_A 92 YVSGLPKTMTQKELEQLFSQYGRIITSRILV--DQVTG---VSRGVGFIRFDKRIEAEEAIKGLNGQKPS-GATEPITVK 165 (167)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCCCT-TCSSCCEEE
T ss_pred EECCCCCcCCHHHHHHHHHhcCCEeEEEEEe--cCCCC---CccceEEEEeCCHHHHHHHHHHhcCCccC-CCccceEEE
Confidence 48999999999875 55 899999998 22222 34799999999999999999999999999 854 8888
Q ss_pred ec
Q psy17775 138 YS 139 (211)
Q Consensus 138 ~S 139 (211)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 180
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=1.6e-07 Score=69.89 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=58.1
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
.|.|||..++.+.| |. -++.|++++. . ++ ..+|.|||+|.+.++|+.||. +++..|. |+.|+|..|.
T Consensus 19 ~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d--~-~g---~~~G~afV~F~~~~~a~~Al~-~~~~~~~-gr~i~V~~~~ 90 (102)
T 1wez_A 19 HMRGLPYRATENDIYNFFSPLNPMRVHIEIG--P-DG---RVTGEADVEFATHEDAVAAMA-KDKANMQ-HRYVELFLNS 90 (102)
T ss_dssp EEESCCTTCCHHHHHHSSCSCCCSEEEEEES--S-SS---CEEEEEEEECSSSHHHHHHHT-TSSCCSS-SSCCEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHHcCceEEEEEEC--C-CC---CEeeEEEEEECCHHHHHHHHH-hCCCeEC-CcEEEEEECC
Confidence 48999999999875 76 4669999983 2 33 457999999999999999995 7999988 9999999877
Q ss_pred Ccc
Q psy17775 141 QVF 143 (211)
Q Consensus 141 ~~~ 143 (211)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 181
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.42 E-value=1.1e-07 Score=75.04 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=60.1
Q ss_pred ccCCCCCCCccccc---cc---c---ceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEE
Q psy17775 66 DYYGAPPAFEFERS---YN---S---PVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---n---V~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V 136 (211)
.|.||+..++.+.| |. . |..|++++..++ ..+|.|||+|.+.+.|+.||. |+|..|. |+.|+|
T Consensus 48 fVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g------~srG~aFV~F~~~e~a~~Al~-~~g~~l~-gr~i~V 119 (136)
T 2hgl_A 48 KLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG------RQSGEAFVELGSEDDVKMALK-KDRESMG-HRYIEV 119 (136)
T ss_dssp EEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSS------CEEEEEEEECSSHHHHHHHHT-TTEEESS-SSEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCC------CCCeEEEEEECCHHHHHHHHh-cCCCEEC-CEEEEE
Confidence 48999999999986 66 5 889999983222 457999999999999999999 9999999 999999
Q ss_pred eecCCccc
Q psy17775 137 AYSKQVFL 144 (211)
Q Consensus 137 ~~SK~~~i 144 (211)
..|+....
T Consensus 120 ~~a~~~e~ 127 (136)
T 2hgl_A 120 FKSHRTEM 127 (136)
T ss_dssp EECCHHHH
T ss_pred EECChHHH
Confidence 99876543
No 182
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=2.7e-07 Score=68.19 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=59.0
Q ss_pred ccCCCCCCCccccc---cc---cceE-eeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVL-DKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~r-vK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.|||..++.+.| |. .|.. |++++. .+| ..+|.|||+|.+.+.|+.||.. +|..|. |+.|+|..
T Consensus 19 ~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~---~~g---~~~G~afV~F~~~~~a~~A~~~-~~~~~~-gr~i~v~~ 90 (104)
T 1wg5_A 19 RLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD---FQG---RSTGEAFVQFASQEIAEKALKK-HKERIG-HRYIEIFK 90 (104)
T ss_dssp EEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC---SSS---CBCSEEEEEESSHHHHHHHHTT-TTCCSS-SSCCEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC---CCC---CcceEEEEEECCHHHHHHHHHh-CcchhC-CcEEEEEE
Confidence 48999999999875 66 6665 777772 233 4579999999999999999998 999998 99999999
Q ss_pred cCCcccc
Q psy17775 139 SKQVFLS 145 (211)
Q Consensus 139 SK~~~i~ 145 (211)
++.....
T Consensus 91 ~~~~~~~ 97 (104)
T 1wg5_A 91 SSRAEVR 97 (104)
T ss_dssp ECTTTSC
T ss_pred CCHHHHH
Confidence 8776544
No 183
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=2.1e-07 Score=72.03 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=56.8
Q ss_pred c--CCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCcee-----cCCce
Q psy17775 67 Y--YGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLL-----CNGKR 133 (211)
Q Consensus 67 v--~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~L-----f~Gk~ 133 (211)
| -||+..++.+.| |. .|..|.+.. . +|.|||+|.|.++|+.|++.|+|..| - |++
T Consensus 30 V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----------~-rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~-g~~ 97 (114)
T 2cq2_A 30 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----------N-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ-KIT 97 (114)
T ss_dssp EETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----------T-CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC-EEE
T ss_pred EECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----------C-CCEEEEEECCHHHHHHHHHHhCCCEEccccCC-CcE
Confidence 7 559989998875 66 999998876 4 79999999999999999999999988 4 789
Q ss_pred eEEeecCCccc
Q psy17775 134 LAVAYSKQVFL 144 (211)
Q Consensus 134 L~V~~SK~~~i 144 (211)
|.|.|++....
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999985443
No 184
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.39 E-value=4.4e-07 Score=68.09 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=45.1
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|++|++++... + ..+|.|||+|.+..+|+.|+..|+|..+. |++|+|.||
T Consensus 53 ~V~~v~i~~~~~---~---~~~G~~fV~f~~~~~A~~A~~~lng~~~~-Gr~i~v~~s 103 (104)
T 1jmt_A 53 EVEEMNVCDNLG---D---HLVGNVYVKFRREEDAEKAVIDLNNRWFN-GQPIHAELS 103 (104)
T ss_dssp CEEEEEECCSSS---S---SSEEEEEEEESCHHHHHHHHHHHTTCEET-TEECCEEEC
T ss_pred ceEEEEEEeCCC---C---CccEEEEEEECCHHHHHHHHHHHCCCEEC-CEEEEEEEc
Confidence 999999998222 2 34799999999999999999999999999 999999987
No 185
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=3.5e-07 Score=65.98 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=54.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|..| ++.+. ..+ .|||+|.+.++|+.||. |+|..|. |++|+|.++
T Consensus 12 ~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~--------~g~-~afV~f~~~~~a~~ai~-l~g~~~~-g~~l~V~~a 79 (94)
T 2e5g_A 12 FVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKD--------KGV-FAIVEMGDVGAREAVLS-QSQHSLG-GHRLRVRPR 79 (94)
T ss_dssp EEECCCTTCCHHHHHHHGGGTSCEEEE-EECSS--------SCC-EEEEEESSHHHHHHHHT-CSCCEET-TEECCCBCS
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCC--------CCc-EEEEEECCHHHHHHHHh-cCCeEEC-CEEEEEEEC
Confidence 38899999999875 66 88887 44411 112 99999999999999999 9999999 999999987
Q ss_pred CCccc
Q psy17775 140 KQVFL 144 (211)
Q Consensus 140 K~~~i 144 (211)
+....
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 65443
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.36 E-value=3.4e-07 Score=70.19 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=55.1
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|| .++.+.| |. .|..|++.+ . +|+|||+|.+.++|+.||..|+|..|. |++|+|.+++
T Consensus 44 Vgnl--~~te~~L~~~F~~~G~I~~v~i~~----------~-kg~aFV~f~~~~~A~~Ai~~lng~~~~-g~~l~V~~a~ 109 (121)
T 2bz2_A 44 VYGE--DMTPTLLRGAFSPFGNIIDLSMDP----------P-RNCAFVTYEKMESADQAVAELNGTQVE-SVQLKVNIAR 109 (121)
T ss_dssp EECS--SCCHHHHHHHHSTTCCCSCEEEET----------T-TTEEEEECSSHHHHHHHHHHHTTCBCS-SCBCEEEECC
T ss_pred EcCC--CCCHHHHHHHHHccCCEEEEEEeC----------C-CCEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEeC
Confidence 6665 4666664 66 899999987 4 799999999999999999999999998 9999999998
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
.....
T Consensus 110 ~~~~~ 114 (121)
T 2bz2_A 110 KQPML 114 (121)
T ss_dssp SSCC-
T ss_pred CCCCC
Confidence 76543
No 187
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.35 E-value=1.2e-06 Score=66.04 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=47.6
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcc
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVF 143 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~ 143 (211)
.|++|++++.++ .++ ..+|.|||+|.+..+|+.|+..|+|..+. |++|.|.|++...
T Consensus 39 ~V~~v~i~~~~~-~~~---~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~-Gr~i~v~~a~~~~ 95 (105)
T 2pe8_A 39 KVGKCVIFEIPG-APD---DEAVRIFLEFERVESAIKAVVDLNGRYFG-GRVVKACFYNLDK 95 (105)
T ss_dssp CEEEEEEEECSS-CCT---TTSEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEECCHHH
T ss_pred CEEEEEEecCCC-CCC---CCcEEEEEEECCHHHHHHHHHHHCCCEEC-CcEEEEEEcCHHH
Confidence 999999998211 111 23799999999999999999999999998 9999999997643
No 188
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.35 E-value=9e-07 Score=66.56 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=46.6
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCC
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~ 141 (211)
.|++|++.+...+.++ ..+|.|+|+|.+..+|+.|++.|||..+. |++|+|.|+..
T Consensus 41 ~V~~v~i~~~~~~~~~---~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~-GR~i~v~~~~~ 96 (105)
T 3v4m_A 41 LVKSIEIPRPVDGVEV---PGCGKIFVEFTSVFDCQKAMQGLTGRKFA-NRVVVTKYCDP 96 (105)
T ss_dssp CEEEEECCCCBTTBCC---TTTTEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEECH
T ss_pred CEEEEEEeccCCCCCc---CCcEEEEEEECCHHHHHHHHHHhCCCEeC-CCEEEEEEeCH
Confidence 9999999882222111 24799999999999999999999999998 99999999754
No 189
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.33 E-value=1.8e-07 Score=68.24 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=57.6
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.||+..++.+.| |. .|+.|++++ +. +| ..+|.|||+|.+.++|+.|+. +|..|. |++|.|.++.
T Consensus 14 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~--~~-~g---~~~g~afV~f~~~~~a~~Ai~--~~~~~~-g~~l~v~~a~ 84 (102)
T 2xs2_A 14 VGGIDVRMDETEIRSFFARYGSVKEVKIIT--DR-TG---VSKGYGFVSFYNDVDVQKIVE--SQINFH-GKKLKLGPAI 84 (102)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEEEEE--CT-TS---CEEEEEEEEESSCCCHHHHTT--CCCEET-TEECEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCeEEEEEEE--CC-CC---CccceEEEEECCHHHHHHHHh--CCCeEC-CEEEEEEECC
Confidence 8899999999985 55 999999998 33 33 457999999999999999999 999999 9999998886
Q ss_pred Cc
Q psy17775 141 QV 142 (211)
Q Consensus 141 ~~ 142 (211)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.33 E-value=2.8e-07 Score=79.68 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=55.6
Q ss_pred cCCCCCCC---------ccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCcee---
Q psy17775 67 YYGAPPAF---------EFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLL--- 128 (211)
Q Consensus 67 v~nl~~~i---------~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~L--- 128 (211)
|.||+..+ +.+.| |. .|+.|++++ + +|+|||+|.+..+|+.|++.|+|..|
T Consensus 139 VgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----------~-kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 139 VGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----------S-KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp EECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----------G-GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----------C-CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 78998877 35554 55 999999999 5 79999999999999999999999999
Q ss_pred ---------cCCceeEEeecCCcc
Q psy17775 129 ---------CNGKRLAVAYSKQVF 143 (211)
Q Consensus 129 ---------f~Gk~L~V~~SK~~~ 143 (211)
. |+.|.|.+++...
T Consensus 208 ~~~e~~~~~~-gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRRE-GTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGG-SCCCEEEECC---
T ss_pred ccccccccCC-CCEEEEEEccCCC
Confidence 7 9999999998643
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=6.1e-07 Score=67.48 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=49.5
Q ss_pred CCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcc
Q psy17775 72 PAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVF 143 (211)
Q Consensus 72 ~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~ 143 (211)
+.++.+.| |. .|+.|.+++ ..+|+|||+|.+..+|+.||+.+++ +. |++|+|.+++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~-g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----------KKPGTAVVEFATVKAAELAVQNEVG--LV-DNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----------SSSSEEEEEESCHHHHHHHHHTCCB--CS-SSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----------CCCCEEEEEECCHHHHHHHHHhcCC--CC-CCeEEEEEccCCC
Confidence 35666654 66 999999997 6689999999999999999999666 67 9999999988654
No 192
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.31 E-value=6.4e-07 Score=70.98 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=57.7
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.||+..++.+.| |. .|+.|++++ +.-+| ..+|.|||+|.+.++|+.|+.. +|..|. |++|+|.++
T Consensus 108 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~g---~~~g~afV~F~~~~~A~~A~~~-~~~~~~-G~~i~v~~a 180 (196)
T 1l3k_A 108 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT--DRGSG---KKRGFAFVTFDDHDSVDKIVIQ-KYHTVN-GHNCEVRKA 180 (196)
T ss_dssp EEECCTTTCCHHHHHHHHTTTSCEEEEEEEE--CTTTC---CEEEEEEEEESSHHHHHHHHHC-SCCEET-TEECEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHhcCCCeEEEEEee--cCCCC---CccceEEEEECCHHHHHHHHHh-CCcEEC-CEEEEEEec
Confidence 48999999999985 55 899999998 22223 3478999999999999999986 799988 999999999
Q ss_pred CCcccc
Q psy17775 140 KQVFLS 145 (211)
Q Consensus 140 K~~~i~ 145 (211)
......
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 876554
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=1.7e-06 Score=64.71 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=47.3
Q ss_pred ccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcc
Q psy17775 79 SYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVF 143 (211)
Q Consensus 79 LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~ 143 (211)
+|. .|..|.+..+ ..+|.|||+|.+..+|+.|+..|+|..|. |++|+|.+++...
T Consensus 46 ~f~~~G~v~~v~i~~~---------~~~G~afV~f~~~~~A~~Ai~~lng~~~~-gr~l~v~~a~~~~ 103 (112)
T 2dit_A 46 ECSKFGQIRKLLLFDR---------HPDGVASVSFRDPEEADYCIQTLDGRWFG-GRQITAQAWDGTT 103 (112)
T ss_dssp HGGGTSCCSEEEEETT---------CTTCEEEEECSCHHHHHHHHHHSTTCEET-TEECEEEECCSCC
T ss_pred HHHccCCEeEEEEecC---------CCCEEEEEEECCHHHHHHHHHHcCCCEEC-CcEEEEEEeCCCC
Confidence 466 8999976531 34799999999999999999999999998 9999999987644
No 194
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.26 E-value=3.7e-07 Score=72.39 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=59.7
Q ss_pred ccCCCCCCCccccc---cc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 66 DYYGAPPAFEFERS---YN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
.|.|||..++.+.| |. -|+.|++++..+ | ..+|.|||+|.+.+.|+.|| .|++..|. |+.|+|..+.
T Consensus 50 fV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~---g---~srGfaFV~F~~~e~A~~Al-~~~g~~l~-gR~i~V~~a~ 121 (139)
T 2hgn_A 50 HMRGLPYKATENDIYNFFSPLNPVRVHIEIGPD---G---RVTGEADVEFATHEEAVAAM-SKDRANMQ-HRYIELFLNS 121 (139)
T ss_dssp ECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSS---S---CSSCCCEEECSHHHHHHHHT-TCCSCSSS-SCCCCCEECC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCC---C---CCceEEEEEeCCHHHHHHHH-hhCCCEEC-CEEEEEEECC
Confidence 48999999999986 66 577999988333 2 45899999999999999999 89999998 9999999887
Q ss_pred Cccc
Q psy17775 141 QVFL 144 (211)
Q Consensus 141 ~~~i 144 (211)
....
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 195
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=4.5e-07 Score=64.56 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=53.7
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
|.|||..++.+.| |. .|+.|++++ ..+|.|||+|.+.++|+.|+.. ++.+. |++|+|.+++
T Consensus 10 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~----------~~~g~afV~f~~~~~a~~~~~~--~~~~~-g~~l~v~~a~ 76 (88)
T 1wf0_A 10 VGRCTGDMTEDELREFFSQYGDVMDVFIPK----------PFRAFAFVTFADDQIAQSLCGE--DLIIK-GISVHISNAE 76 (88)
T ss_dssp EESCCSSSCHHHHHHHSTTTSCCCEEECCS----------SCCSCCEEECSCHHHHHHTTTC--EEEET-TEEEEEECCC
T ss_pred EeCCCCCCCHHHHHHHHHHcCCeeEEEEec----------CCCCEEEEEECCHHHHHHHhcC--CceeC-CEEEEEEecC
Confidence 7899999999985 66 899999998 5689999999999999865332 34446 9999999988
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
.....
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 196
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.24 E-value=4.7e-07 Score=70.82 Aligned_cols=70 Identities=24% Similarity=0.215 Sum_probs=58.1
Q ss_pred ccCCCCCCCccccc---cc--cce--EeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 66 DYYGAPPAFEFERS---YN--SPV--LDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--nV~--rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|.|||..++.+.| |. .|+ .|++++..+| ..+|.|||+|.+.++|+.||.. ++..|. |+.|+|..
T Consensus 46 fVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~G------rsrGfaFV~F~~~e~A~~Al~~-~~~~l~-gR~I~V~~ 117 (126)
T 2hgm_A 46 RLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEG------KITGEAFVQFASQELAEKALGK-HKERIG-HRYIEVFK 117 (126)
T ss_dssp EEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSS------SSCSEEEEEESSTTHHHHHHTT-TTCCBT-TBCCCCEE
T ss_pred EEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCC------CCceEEEEEECCHHHHHHHHHH-CCCEEC-CEEEEEEE
Confidence 48999999999985 66 777 8999873333 4579999999999999999985 777887 99999998
Q ss_pred cCCcc
Q psy17775 139 SKQVF 143 (211)
Q Consensus 139 SK~~~ 143 (211)
|....
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86544
No 197
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.22 E-value=2e-06 Score=66.06 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=45.1
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCC
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~ 141 (211)
.|++|++.+. ..+|.|+|+|.+.++|+.|++.|||..+. |++|.|.|+..
T Consensus 43 ~V~~v~i~~~---------~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~-GR~i~v~~~~~ 92 (114)
T 3s6e_A 43 GVIHIYVDKN---------SAQGNVYVKCPSIAAAIAAVNALHGRWFA-GKMITAAYVPL 92 (114)
T ss_dssp CCSEEEECTT---------CTTCCEEEECSSHHHHHHHHHHHTTCEET-TEECEEEEECH
T ss_pred CEEEEEEecC---------CCcEEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEEEcH
Confidence 9999999871 13799999999999999999999999998 99999999854
No 198
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.09 E-value=2.2e-06 Score=61.95 Aligned_cols=63 Identities=11% Similarity=-0.010 Sum_probs=50.2
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCce--ecCCceeEEe
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTL--LCNGKRLAVA 137 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~--Lf~Gk~L~V~ 137 (211)
.|.||+..++.+.| |. .|+.|++++ ..+|.|||+|.+.++|+. |+|.. +- |++|+|.
T Consensus 15 ~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~----------~srGfaFV~F~~~~~A~~----~~~~~~~~~-g~~v~v~ 79 (89)
T 3d2w_A 15 FVGRCTEDMTAEELQQFFCQYGEVVDVFIPK----------PFRAFAFVTFADDKVAQS----LCGEDLIIK-GISVHIS 79 (89)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEECCS----------SCCSEEEEEESCHHHHHH----HTTCEEEET-TEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHhccCCEEEEEEee----------CCCCEEEEEECCHHHHHH----HcCCCcccC-CEEEEEE
Confidence 38999999999986 65 999999998 568999999999999983 45544 44 8899999
Q ss_pred ecCCcc
Q psy17775 138 YSKQVF 143 (211)
Q Consensus 138 ~SK~~~ 143 (211)
+++...
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 887643
No 199
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.02 E-value=5.1e-06 Score=68.41 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=56.1
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
.|.|||..++.+.| |+ .|..|.+.+...+ ..+|+|||+|.+.++|+.|+..++ ..|. |++|+|..+
T Consensus 113 ~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~------~~kG~aFVeF~~~e~A~~A~~~~~-~~~~-Gr~l~V~~~ 184 (193)
T 2voo_A 113 YIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHK------AFKGSIFVVFDSIESAKKFVETPG-QKYK-ETDLLILFK 184 (193)
T ss_dssp EEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTC------CEEEEEEEEESSHHHHHHHHHCTT-CEET-TEECEEEET
T ss_pred EecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCC------CcccEEEEEECCHHHHHHHHHhCC-CeEC-CEEEEEEEh
Confidence 38999999988875 66 9999999873322 457999999999999999998765 4777 999999976
Q ss_pred CCc
Q psy17775 140 KQV 142 (211)
Q Consensus 140 K~~ 142 (211)
+.-
T Consensus 185 ~~y 187 (193)
T 2voo_A 185 DDY 187 (193)
T ss_dssp TTC
T ss_pred HHH
Confidence 653
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.02 E-value=5.6e-06 Score=63.80 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=45.8
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCC
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~ 141 (211)
.|++|+|.+...+..+. ...+|.|||+|.+.++|+.|+..|+|..+- |++|+|.|+..
T Consensus 51 ~V~~v~I~~~~~~~~~~-~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~-GR~i~v~~~~~ 108 (118)
T 3ue2_A 51 AVNRVIIYQEKQGEEED-AEIIVKIFVEFSIASETHKAIQALNGRWFA-GRKVVAEVYDQ 108 (118)
T ss_dssp CEEEEEEEEEEESSSTT-CEEEEEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEEECH
T ss_pred CEeEEEEeecCCCcccC-CcceEEEEEEECCHHHHHHHHHHHCCCEEC-CcEEEEEEcCh
Confidence 99999999821110000 012489999999999999999999999988 99999999865
No 201
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=1.1e-05 Score=60.26 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=51.6
Q ss_pred ccCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeec
Q psy17775 66 DYYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYS 139 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~S 139 (211)
-|.||+..++.+.| |. .|+ ++++.+ ..+...-..+|.|||+|.+.++|+.||..|++ |. |+.|.+..+
T Consensus 12 fVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~--~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~-G~~~~~~~~ 85 (114)
T 2dnl_A 12 FVGGLPPDIDEDEITASFRRFGPLV-VDWPHK--AESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED-GKLYLCVSS 85 (114)
T ss_dssp EEECCCTTCCHHHHHHHTTTTCCCC-EECTTS--SSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET-TEEEEEECC
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCEE-EEEeec--CCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC-CcEEEeccC
Confidence 48999999999985 66 777 777762 22200004479999999999999999999954 55 888887755
Q ss_pred CC
Q psy17775 140 KQ 141 (211)
Q Consensus 140 K~ 141 (211)
+.
T Consensus 86 ~~ 87 (114)
T 2dnl_A 86 PT 87 (114)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 202
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=9.1e-06 Score=61.05 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=42.6
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCc
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQV 142 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~ 142 (211)
+|+.+||.. +.+||.|.|.++|..||+ |+|..+. |+.|+|++++..
T Consensus 41 ~Vi~vr~~~-------------d~~fVtF~d~~sAlaAi~-mnG~~v~-Gr~LkV~lkt~d 86 (91)
T 2dnr_A 41 EVILIRFVE-------------DKMWVTFLEGSSALNVLS-LNGKELL-NRTITIALKSPS 86 (91)
T ss_dssp CEEEEEECS-------------SSEEEEESSHHHHHHGGG-GTTCEET-TEEEEEEECCCS
T ss_pred CeEEEEEec-------------CCEEEEECChHHHHHHHh-cCCeEeC-CeEEEEEeCCCC
Confidence 999999999 559999999999999998 9999999 999999987754
No 203
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.97 E-value=3.9e-06 Score=69.48 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=52.6
Q ss_pred ccCCCCCCCccccc---cc---cc--eEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCc----e
Q psy17775 66 DYYGAPPAFEFERS---YN---SP--VLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGK----R 133 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---nV--~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk----~ 133 (211)
-|.||+..++.+.| |. .| .+|+++... + .++|.|||+|.+.++|..||..|||..|- |. +
T Consensus 127 ~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~----~---~~~g~gfV~f~~~~~A~~Ai~~lng~~~~-g~~~~~p 198 (205)
T 3tyt_A 127 HFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK----S---ERSSSGLLEWDSKSDALETLGFLNHYQMK-NPNGPYP 198 (205)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC----S---SSSEEEEEECSSHHHHHHHHHHHTTCEEC-CSSSSSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC----C---CCceEEEEEeCCHHHHHHHHHHhCCCCcc-CCCCCcc
Confidence 38999999998875 66 77 899998821 1 23599999999999999999999999998 75 4
Q ss_pred eEEee
Q psy17775 134 LAVAY 138 (211)
Q Consensus 134 L~V~~ 138 (211)
+.|.+
T Consensus 199 ~~vk~ 203 (205)
T 3tyt_A 199 YTLKL 203 (205)
T ss_dssp EECEE
T ss_pred eEEEe
Confidence 55544
No 204
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=2.6e-06 Score=66.08 Aligned_cols=71 Identities=21% Similarity=0.223 Sum_probs=58.1
Q ss_pred ccCCCCCCCccccc---cc---c----ceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 66 DYYGAPPAFEFERS---YN---S----PVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn---n----V~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
.|.|||..++.+.| |. . |..|++++.. +| ..+|.|||+|.+.+.|+.||.. ++..|. |+.|+
T Consensus 27 ~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~---~g---r~~G~aFV~F~~~~~A~~Al~~-~~~~l~-gR~i~ 98 (123)
T 2dha_A 27 RMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP---DG---RPTGDAFVLFACEEYAQNALRK-HKDLLG-KRYIE 98 (123)
T ss_dssp EECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT---TS---CEEEEEEECCSSHHHHHHHHTT-TTEESS-SCEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC---CC---CEeeEEEEEECCHHHHHHHHHh-CCCeeC-CeEEE
Confidence 48999999999985 66 3 4689998832 33 4579999999999999999986 998888 99999
Q ss_pred EeecCCccc
Q psy17775 136 VAYSKQVFL 144 (211)
Q Consensus 136 V~~SK~~~i 144 (211)
|..+.....
T Consensus 99 V~~a~~~e~ 107 (123)
T 2dha_A 99 LFRSTAAEV 107 (123)
T ss_dssp CEEECHHHH
T ss_pred EEECCHHHH
Confidence 998876544
No 205
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=1.2e-05 Score=60.22 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=29.2
Q ss_pred CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...+|+++|||.|||.++||++|+++|+++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG 40 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFG 40 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 4678999999999999999999999999998
No 206
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.87 E-value=1e-05 Score=61.19 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=28.8
Q ss_pred CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...+|+++||+.|||.++||++|.++|+++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG 46 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFG 46 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccC
Confidence 3678999999999999999999999999998
No 207
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.86 E-value=8.7e-06 Score=68.86 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=58.6
Q ss_pred cCCCCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecC---CceeEEe
Q psy17775 67 YYGAPPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCN---GKRLAVA 137 (211)
Q Consensus 67 v~nl~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~---Gk~L~V~ 137 (211)
|.||+..++.+.| |. .|..|++++... | ..+|.|||+|.+..+|..|+..|++-.++. |++|.|.
T Consensus 101 v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~---g---~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 101 VKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR---G---RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT---S---CEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred ccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC---C---CcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 7899999998876 55 999999998332 2 457999999999999999999995533332 7899999
Q ss_pred ecCCcccc
Q psy17775 138 YSKQVFLS 145 (211)
Q Consensus 138 ~SK~~~i~ 145 (211)
+++.....
T Consensus 175 ~~~~~~~~ 182 (261)
T 3sde_A 175 PMEQFDDE 182 (261)
T ss_dssp ECCCEESS
T ss_pred eccccCcc
Confidence 99876543
No 208
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.80 E-value=1.9e-05 Score=59.03 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=29.0
Q ss_pred CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...+|+++|||.|||.++||++|+++|+++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG 40 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFG 40 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999999999999998
No 209
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.75 E-value=1.2e-05 Score=64.37 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=60.9
Q ss_pred ccCCC----CCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCC----HHH----HHHHHH--HhCC
Q psy17775 66 DYYGA----PPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGD----TLS----AERAMG--NLSK 125 (211)
Q Consensus 66 ~v~nl----~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D----~~~----A~~Ai~--~L~g 125 (211)
.|+|| +..++.+.| |. .|..|+++. |..+| ..+|.|||+|.| +.. |..||. .|+|
T Consensus 6 ~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~--Dp~Tg---~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 6 VVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFN--DPNSA---LPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp EEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEE--CTTTC---CEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEe--cCCCC---ceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 37888 888888875 66 999999999 88888 678999999996 322 899999 8999
Q ss_pred ceecCCceeEEeecCCccc
Q psy17775 126 TLLCNGKRLAVAYSKQVFL 144 (211)
Q Consensus 126 ~~Lf~Gk~L~V~~SK~~~i 144 (211)
..|- |.+|+|.+-+...+
T Consensus 81 ~~I~-Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 81 CFIM-GFKFEVILNKHSIL 98 (136)
T ss_dssp EEET-TEEEEEEECCTTHH
T ss_pred Ceec-CcEEEEEECcccHH
Confidence 9999 99999998877544
No 210
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=3.5e-05 Score=59.70 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...+|+++|||.|||.++||++|+++|+++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG 56 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFG 56 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 3678999999999999999999999999998
No 211
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.69 E-value=2.5e-05 Score=70.75 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=62.5
Q ss_pred cCC--CCCCCccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecC--Cc--ee
Q psy17775 67 YYG--APPAFEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCN--GK--RL 134 (211)
Q Consensus 67 v~n--l~~~i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~--Gk--~L 134 (211)
|.| |.-.++.|.| |+ .|.+|++.. + +|.|||+|.+.++|+.||+.|||..+.. |+ +|
T Consensus 23 VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----------~-kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----------N-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp EETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----------T-CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred EEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----------C-CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 555 4557888875 66 999998876 4 6999999999999999999999998841 44 68
Q ss_pred EEeecCCcccccCCCCccCCCCCCccccccc
Q psy17775 135 AVAYSKQVFLSDVSHPYELPDGSESFKDFTG 165 (211)
Q Consensus 135 ~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~ 165 (211)
.|+|.+...... ..+..+++|-..+.||-.
T Consensus 92 y~~~~~~~~~~~-~~~~~lp~Gl~~~p~fis 121 (345)
T 3tht_A 92 YLNFVEKVQWKE-LRPQALPPGLMVVEEIIS 121 (345)
T ss_dssp EEEECSSEEEEE-EECCSCCTTEEEETTCSC
T ss_pred EEEEeecccccc-cccccCCCceEEEcCcCC
Confidence 889986433321 123456777444555544
No 212
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=5.6e-05 Score=57.19 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=39.8
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEee
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAY 138 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~ 138 (211)
.|+.|||.. +.+||.|.|.++|..||+ |+|..+. |+.|+|++
T Consensus 50 ~Vilvr~v~-------------d~~fVtF~d~~sAl~AI~-ldG~~v~-Gr~L~V~~ 91 (95)
T 1ufw_A 50 TIVLVRINQ-------------GQMLVTFADSHSALSVLD-VDGMKVK-GRAVKISG 91 (95)
T ss_dssp CCSEEEEET-------------TEEEEECSCSHHHHHHHH-GGGSEET-TEEEEEEC
T ss_pred CEEEEEEec-------------CcEEEEEcChHHHHHHHh-cCCeeeC-CeEEEEec
Confidence 899999999 569999999999999998 9999999 99999975
No 213
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.60 E-value=2.2e-05 Score=60.85 Aligned_cols=68 Identities=9% Similarity=0.056 Sum_probs=26.3
Q ss_pred CeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccCCchhccCCCCC
Q psy17775 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQ 183 (211)
Q Consensus 104 g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~~~~~~~kn~i~ 183 (211)
-.+++++.|...|..||..++|-... |.. .+.+++.+ .-.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~-g~~-~~~~~~~~--------------------------------------~~~ 44 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQM-GRG-SMSYGRPP--------------------------------------PDV 44 (135)
T ss_dssp --------------------------------CCSCCSC--------------------------------------SSG
T ss_pred ccccccccCCCchhhhhhhccCCCCC-CCC-CCCcCCCC--------------------------------------CCC
Confidence 57899999999999999999986655 432 11111100 011
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+++.+|||.|||.++||++|.++|+++|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G 72 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYG 72 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 2457899999999999999999999987
No 214
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.49 E-value=0.00011 Score=60.51 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=45.6
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCC
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQ 141 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~ 141 (211)
.|++|++.+....-. +....+|.+||+|.+..+|+.||..|+|..+. |++|.+.|+..
T Consensus 155 ~v~~~~v~~~~~~~~-~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~-gr~i~~~~~~~ 212 (222)
T 3dxb_A 155 AVNRVIIYQEKQGEE-EDAEIIVKIFVEFSIASETHKAIQALNGRWFA-GRKVVAEVYDQ 212 (222)
T ss_dssp CEEEEEEEEEECCSS-TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS-SSBCEEEECCH
T ss_pred CeEEEEEecCCCCcc-cCcCceeEEEEEECCHHHHHHHHHHhcCceEC-CeEEEEEEcCH
Confidence 999999986111100 00023689999999999999999999999988 99999999764
No 215
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=7.1e-05 Score=56.22 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=27.8
Q ss_pred CCCCcceEEeecCCC-CCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPP-DITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~-~~tee~L~~lf~~~G 211 (211)
-..|+++|||.|||. ++||++|+++|+++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG 41 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFG 41 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGS
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcC
Confidence 346899999999999 999999999999998
No 216
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=6.5e-05 Score=57.13 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=27.1
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+|+.+|||.|||.++||++|+++|+++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG 41 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFG 41 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999999999987
No 217
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.00011 Score=52.78 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=27.5
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+|+.+|||.|||.++||++|.++|+++|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 42 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFG 42 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 346789999999999999999999999987
No 218
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.00011 Score=56.34 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=27.9
Q ss_pred CCCCcceEEeecCCCC-CCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPD-ITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~-~tee~L~~lf~~~G 211 (211)
..+|+++|||.|||.+ +||++|+++|+++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG 51 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYG 51 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTS
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcC
Confidence 3678999999999998 99999999999998
No 219
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.00015 Score=50.66 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=26.3
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+|+.+|||.|||.++||++|.++|+++|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G 30 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYG 30 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 5788999999999999999999999987
No 220
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.32 E-value=0.00015 Score=52.15 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=25.2
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+|..+|||.|||.++||++|+++|+++|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G 36 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYG 36 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccC
Confidence 456788999999999999999999999997
No 221
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.32 E-value=0.00017 Score=50.08 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=26.3
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+|+.+|||.|||.++||++|.++|+++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G 32 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFG 32 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccC
Confidence 5678999999999999999999999987
No 222
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.00017 Score=50.91 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++.+|||.|||.++||++|+++|+++|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G 30 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYG 30 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 4678999999999999999999999987
No 223
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.00027 Score=50.94 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=28.1
Q ss_pred CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...+|+.+|||.|||.++||++|+++|+++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYG 40 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcC
Confidence 3457789999999999999999999999987
No 224
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00016 Score=51.26 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=27.6
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+|+.+|||.|||.++|+++|.++|+++|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G 40 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYG 40 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 456789999999999999999999999987
No 225
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00022 Score=50.53 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=27.5
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+++.+|||.|||.++||++|.++|+++|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 41 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYG 41 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 456788999999999999999999999987
No 226
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.21 E-value=0.00027 Score=49.54 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=26.0
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++.+|||.|||.++||++|.++|+++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G 36 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFG 36 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 4678999999999999999999999987
No 227
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.20 E-value=0.00027 Score=50.95 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=27.6
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+|..+|||.|||.++||++|+++|+++|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 38 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIG 38 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 456789999999999999999999999987
No 228
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.19 E-value=0.00028 Score=51.11 Aligned_cols=29 Identities=10% Similarity=-0.054 Sum_probs=26.8
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++||++|.++|+++|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G 40 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFG 40 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 46788999999999999999999999987
No 229
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.18 E-value=0.00025 Score=50.41 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+|+.+|||.|||.++||++|+++|+++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQ 40 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999987
No 230
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.18 E-value=0.00025 Score=50.20 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=26.2
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+|+.+|||.|||.++||++|.++|+++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G 33 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYG 33 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 5678999999999999999999999987
No 231
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.00025 Score=50.38 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=25.9
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+++.+|||.|||.++||++|.++|+++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G 33 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRK 33 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 4678999999999999999999999987
No 232
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.17 E-value=0.00026 Score=50.32 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=26.1
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+++.+|||.|||.++||++|.++|+++|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G 35 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYG 35 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999999987
No 233
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.16 E-value=0.00027 Score=49.18 Aligned_cols=28 Identities=18% Similarity=-0.030 Sum_probs=26.1
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+++.+|+|.|||.++|+++|.++|+++|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G 37 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFG 37 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTS
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 5678999999999999999999999987
No 234
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.00029 Score=50.70 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCCcceEEeecCCC-CCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPP-DITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~-~~tee~L~~lf~~~G 211 (211)
.+|+.+|||.|||. ++||++|.++|+++|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G 36 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYG 36 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcC
Confidence 46789999999998 999999999999987
No 235
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.15 E-value=0.00033 Score=49.97 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=26.5
Q ss_pred CCCcceEEeecCCCCCCHHHHH----hhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLT----DISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~----~lf~~~G 211 (211)
.+|+.+|||.|||.++|+++|. ++|+++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G 37 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFG 37 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC
Confidence 4688999999999999999999 9999987
No 236
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.14 E-value=0.00033 Score=51.29 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=26.6
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++||++|.++|+++|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 47 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYG 47 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999987
No 237
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00034 Score=50.30 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=26.1
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.|+.+|||.|||.++||++|.++|+++|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G 35 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFG 35 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999999987
No 238
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.13 E-value=0.00029 Score=49.12 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=24.9
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+|+.+|||.|||.++||++|+++|+++|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G 31 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFG 31 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999999987
No 239
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.11 E-value=0.0003 Score=50.44 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=26.2
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.|+.+|||.|||.++||++|.++|+++|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G 34 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMG 34 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999999987
No 240
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.11 E-value=0.00039 Score=50.52 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=27.5
Q ss_pred CCCCCcceEEeecCCC-CCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPP-DITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~-~~tee~L~~lf~~~G 211 (211)
...+|+.+|||.|||. ++||++|.++|+++|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G 48 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYG 48 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGS
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcC
Confidence 3567899999999998 999999999999987
No 241
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.10 E-value=0.00039 Score=50.33 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=26.5
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..++.+|||.|||.++||++|.++|+++|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G 38 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYG 38 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 35678999999999999999999999987
No 242
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.10 E-value=0.00053 Score=49.33 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=27.0
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRT 210 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~ 210 (211)
..+|+.+|||.|||.++||++|.++|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 39 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNI 39 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTT
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 55678999999999999999999999998
No 243
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.09 E-value=0.00035 Score=49.32 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=26.1
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+|+.+|||.|||.++|+++|.++|+++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G 33 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECG 33 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999999987
No 244
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.00026 Score=50.15 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=25.9
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+++.+|||.|||.++||++|.++|+++|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G 34 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRG 34 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999999999887
No 245
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.09 E-value=0.00036 Score=50.05 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=26.0
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++.+|||.|||.++||++|.++|+++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G 33 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYG 33 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999999987
No 246
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00045 Score=49.98 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=27.0
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-..++.+|||.|||.++||++|.++|+++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 40 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFG 40 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 345678999999999999999999999987
No 247
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.08 E-value=0.0004 Score=50.09 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=27.0
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...|+.+|||.|||.++||++|+++|+++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g 40 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKAT 40 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 345788999999999999999999999886
No 248
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.00037 Score=50.88 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=26.7
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..|+.+|||.|||.++||++|.++|+++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 40 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFG 40 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999987
No 249
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.08 E-value=0.00034 Score=50.61 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=27.3
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+++.+|||.|||.++||++|.++|+++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 40 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFG 40 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 356789999999999999999999999987
No 250
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00042 Score=49.86 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=25.9
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++.+|||.|||.++||++|.++|+++|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G 42 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHG 42 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999999999987
No 251
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.06 E-value=0.00039 Score=50.52 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=27.4
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+|+.+|||.|||.++||++|.++|+++|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 54 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFG 54 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 346788999999999999999999999987
No 252
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.06 E-value=0.00028 Score=51.27 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=26.5
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..|+.+|||.|||.++||++|.++|+++|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 36 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFG 36 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999886
No 253
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.00042 Score=49.91 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=27.3
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+|+.+|||.|||.++||++|.++|+++|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G 37 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFG 37 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccC
Confidence 346788999999999999999999999987
No 254
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.05 E-value=0.0004 Score=50.37 Aligned_cols=29 Identities=7% Similarity=0.156 Sum_probs=26.7
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++||++|.++|+++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFG 40 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccC
Confidence 45678999999999999999999999987
No 255
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00043 Score=50.85 Aligned_cols=30 Identities=7% Similarity=0.003 Sum_probs=27.3
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+|+.+|||.|||.++||++|.++|+++|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G 40 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAG 40 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 346788999999999999999999999987
No 256
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.04 E-value=0.00042 Score=50.31 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+|+.+|||.|||.++||++|.++|+++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN 40 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC
Confidence 5678999999999999999999999987
No 257
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.00035 Score=50.37 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=26.5
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++||++|.++|+++|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G 37 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG 37 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999876
No 258
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.02 E-value=0.00046 Score=51.10 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=27.4
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+++.+|||.|||.++||++|+++|+++|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 65 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFG 65 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 356788999999999999999999999987
No 259
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.02 E-value=0.00042 Score=49.17 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=27.2
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+++.+|||.|||.++||++|.++|+++|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G 41 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAG 41 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 345778999999999999999999999987
No 260
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.00026 Score=52.18 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.6
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+|+.+|||.|||.++||++|.++|+++|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G 50 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQ 50 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999999999875
No 261
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.00 E-value=0.00045 Score=51.04 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=27.3
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+++.+|||.|||.++||++|.++|+++|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 50 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFG 50 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 456778999999999999999999999987
No 262
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.99 E-value=0.00046 Score=50.74 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=24.5
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+|+|.|||+++|||+|+++|+++|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G 34 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYA 34 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTC
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhC
Confidence 36899999999999999999999987
No 263
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.00056 Score=49.51 Aligned_cols=29 Identities=7% Similarity=-0.003 Sum_probs=26.7
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++||++|.++|+++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAG 40 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999987
No 264
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=0.0005 Score=49.74 Aligned_cols=28 Identities=18% Similarity=0.014 Sum_probs=26.0
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++.+|||.|||.++||++|.++|+++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFG 40 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999999987
No 265
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.00041 Score=50.17 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=26.5
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..++.+|||.|||.++||++|.++|+++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIG 40 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcC
Confidence 45678999999999999999999999886
No 266
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.00062 Score=49.34 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=26.6
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..++.+|||.|||.++||++|.++|+++|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 48 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYG 48 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC
Confidence 45678999999999999999999999987
No 267
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00056 Score=49.29 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=25.8
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+++.+|||.|||.++||++|.++|+++|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G 52 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFG 52 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTS
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCC
Confidence 4468999999999999999999999987
No 268
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00055 Score=49.21 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=25.8
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+.+.+|||.|||.++||++|.++|+++|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G 44 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELG 44 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcC
Confidence 4468999999999999999999999987
No 269
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.96 E-value=0.00038 Score=50.50 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=26.4
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++||++|+++|+++|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 38 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFG 38 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999876
No 270
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.96 E-value=0.00091 Score=49.08 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=27.0
Q ss_pred CCCCcceEEeecCCCC-CCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPD-ITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~-~tee~L~~lf~~~G 211 (211)
..+++.+|||.|||.+ +||++|.++|+++|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G 53 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYG 53 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGS
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCC
Confidence 3456789999999999 99999999999987
No 271
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.96 E-value=0.0006 Score=48.75 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++..+|||.|||.++||++|+++|+++|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G 40 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQ 40 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 34568999999999999999999999987
No 272
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.96 E-value=0.00081 Score=48.59 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=27.1
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-..++.+|||.|||.++||++|.++|+++|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G 40 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFG 40 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGS
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcC
Confidence 455678999999999999999999999987
No 273
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.95 E-value=0.00064 Score=49.78 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=24.3
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+|||.|||.++||++|+++|+++|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G 44 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIG 44 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 46799999999999999999999987
No 274
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.94 E-value=0.00059 Score=50.46 Aligned_cols=29 Identities=10% Similarity=-0.002 Sum_probs=26.5
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++..+|||.|||.++||++|+++|+++|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 42 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFG 42 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 35678999999999999999999999987
No 275
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.92 E-value=0.00069 Score=49.76 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=26.0
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++.+|||.|||.++||++|.++|+++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G 40 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCG 40 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999999999987
No 276
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.00079 Score=48.08 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=25.1
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+..|||.|||.++||++|.++|+++|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G 33 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFG 33 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 457999999999999999999999987
No 277
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.90 E-value=0.00066 Score=50.83 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+++.+|||.|||.++||++|.++|+++|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 47 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYG 47 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 345678999999999999999999999987
No 278
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.89 E-value=0.00068 Score=49.58 Aligned_cols=30 Identities=7% Similarity=0.032 Sum_probs=27.3
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+++.+|||.|||.++||++|.++|+++|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 51 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYG 51 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 346788999999999999999999999987
No 279
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.86 E-value=0.00074 Score=49.75 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=27.2
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-..++.+|||.|||.++||++|.++|+++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFG 40 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 345678999999999999999999999987
No 280
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.85 E-value=0.0014 Score=50.84 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=26.9
Q ss_pred CCCCcceEE--eecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLH--FFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh--~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+|+++|+ |.|||..+||++|.++|++||
T Consensus 19 ~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG 50 (124)
T 2e5i_A 19 PSGGNKVLLLSIQNPLYPITVDVLYTVCNPVG 50 (124)
T ss_dssp CCCCCSEEEEEEESCCSCCCHHHHHHHHTTTS
T ss_pred CCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcC
Confidence 457899976 689999999999999999998
No 281
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84 E-value=0.00054 Score=49.70 Aligned_cols=29 Identities=14% Similarity=-0.059 Sum_probs=26.7
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++..+|||.|||.++||++|.++|+++|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 41 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYG 41 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999987
No 282
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.84 E-value=0.00082 Score=48.68 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=26.3
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..|+.+|||.|||.++||++|.++|+++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g 40 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS 40 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45678999999999999999999999875
No 283
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.84 E-value=0.00097 Score=49.26 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=26.6
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++||++|.++|+++|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G 54 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFG 54 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcC
Confidence 45678999999999999999999999987
No 284
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.83 E-value=0.00082 Score=49.89 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=26.7
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++||++|.++|+++|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 56 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFG 56 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999987
No 285
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.83 E-value=0.00063 Score=52.25 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=27.6
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...|+.+|||.|||.++|+++|.++|+++|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 70 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYV 70 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 356889999999999999999999999987
No 286
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.82 E-value=0.00056 Score=48.72 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=26.1
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+|+.+|||.|||.++||++|.++|+++|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g 41 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDAL 41 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCC
Confidence 35678999999999999999999999875
No 287
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.79 E-value=0.00069 Score=51.58 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=26.1
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++++|||.|||.++||++|+++|+++|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G 48 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYA 48 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 5678999999999999999999999987
No 288
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.78 E-value=0.0011 Score=51.64 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=28.1
Q ss_pred CCCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 181 RIQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 181 ~i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...+|+.+|||.|||.++||++|.++|+++|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 64 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSG 64 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4556789999999999999999999999987
No 289
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.78 E-value=0.00091 Score=49.53 Aligned_cols=30 Identities=20% Similarity=-0.015 Sum_probs=27.3
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+++.+|||.|||.++||++|.++|+++|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 51 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFG 51 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 346778999999999999999999999987
No 290
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.75 E-value=0.00064 Score=52.19 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+|+.+|+|.|||.++||++|.++|+++|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 71 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYG 71 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 346789999999999999999999999987
No 291
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.73 E-value=0.00077 Score=49.42 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=26.4
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++|+++|.++|+++|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 50 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFG 50 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999999999887
No 292
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.73 E-value=0.0011 Score=48.63 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=25.0
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+...|||.|||.++||++|.++|+++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G 40 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAG 40 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 457899999999999999999999987
No 293
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.71 E-value=0.0012 Score=48.52 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=26.2
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..++.+|||.|||.++||++|.++|+++|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 50 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFG 50 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 34567999999999999999999999987
No 294
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.71 E-value=0.0011 Score=49.91 Aligned_cols=30 Identities=7% Similarity=-0.022 Sum_probs=27.2
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-.+++.+|||.|||.++|+++|+++|+++|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 88 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFG 88 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGS
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 345788999999999999999999999987
No 295
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.70 E-value=0.001 Score=46.45 Aligned_cols=26 Identities=15% Similarity=-0.010 Sum_probs=24.3
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+.+|||.|||.++||++|.++|+++|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G 31 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCG 31 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 46899999999999999999999987
No 296
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.70 E-value=0.00091 Score=49.58 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=25.2
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
++.+|||.|||.++||++|.++|+++|
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G 36 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKG 36 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcC
Confidence 457899999999999999999999987
No 297
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.68 E-value=0.00084 Score=49.63 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=25.2
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..+|||.|||.++||++|.++|+++|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G 52 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWG 52 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 457999999999999999999999987
No 298
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.68 E-value=0.0011 Score=49.08 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=24.2
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++.+|||.|||.++||++|.++|+++|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G 50 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFG 50 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccC
Confidence 4567999999999999999999999987
No 299
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.65 E-value=0.0014 Score=48.63 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=26.2
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+..+|||.|||.++||++|.++|+++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g 40 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIP 40 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSC
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCC
Confidence 34578999999999999999999999986
No 300
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=96.65 E-value=0.00093 Score=48.18 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=25.1
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
++.+|||.|||.++||++|.++|+++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G 34 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYG 34 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 457999999999999999999999987
No 301
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.61 E-value=0.00076 Score=48.55 Aligned_cols=28 Identities=14% Similarity=-0.009 Sum_probs=25.2
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++.+|||.|||.++||++|.++|+++|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G 42 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELF 42 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 3567999999999999999999999875
No 302
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.61 E-value=0.0013 Score=49.21 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=26.6
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..++.+|||.|||.++||++|.++|+++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 60 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFG 60 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 35678999999999999999999999987
No 303
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.60 E-value=0.0015 Score=48.10 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=25.4
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+..+|||.|||.++||++|.++|+++|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G 40 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN 40 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 3457999999999999999999999886
No 304
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.00075 Score=48.06 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=24.9
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
++.+|||.|||.++||++|+++|+++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYG 40 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcC
Confidence 357899999999999999999999887
No 305
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.58 E-value=0.0015 Score=46.92 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=25.3
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRT 210 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~ 210 (211)
.+|+.+|||.|||.++||++|.++|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 39 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS 39 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC
Confidence 4578899999999999999999999865
No 306
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.53 E-value=0.0018 Score=50.97 Aligned_cols=29 Identities=21% Similarity=0.099 Sum_probs=25.4
Q ss_pred CCCcceEE--eecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLH--FFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh--~~NlP~~~tee~L~~lf~~~G 211 (211)
.+|+++|+ |.||+..+||++|.++|++||
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG 53 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFG 53 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSS
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcC
Confidence 45788887 999999999999999999998
No 307
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.52 E-value=0.0015 Score=48.04 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=24.6
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+.+|||.|||.++||++|.++|+++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G 50 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVG 50 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 57999999999999999999999987
No 308
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.51 E-value=0.0012 Score=45.96 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=24.3
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRT 210 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~ 210 (211)
++.+||+.|||.++||++|.++|+++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~ 30 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQ 30 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999987
No 309
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.50 E-value=0.00087 Score=48.59 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..++..+|||.|||.++||++|.++|+++|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 44 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN 44 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 345678999999999999999999999987
No 310
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.49 E-value=0.0023 Score=46.68 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=25.6
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+..+|++.|||.++||++|.++|+++|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G 40 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLE 40 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 3467999999999999999999999987
No 311
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.48 E-value=0.0017 Score=51.19 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.1
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..|+.+|||.|||.++|+++|.++|+++|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 97 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYG 97 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCC
Confidence 45678999999999999999999999987
No 312
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.46 E-value=0.0015 Score=49.67 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=26.2
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..++++|||.|||.++||++|.++|+++|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G 67 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYG 67 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 34578999999999999999999999876
No 313
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.45 E-value=0.0022 Score=48.41 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.6
Q ss_pred CCCcce-EEeecCCCCCCHHH----HHhhhccCC
Q psy17775 183 QPPSQL-LHFFNAPPDITEEQ----LTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~-Lh~~NlP~~~tee~----L~~lf~~~G 211 (211)
.||+.+ |||.|||.++++++ |.++|+++|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG 38 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG 38 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC
Confidence 478998 88999999999998 558999995
No 314
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.37 E-value=0.0012 Score=49.33 Aligned_cols=27 Identities=11% Similarity=-0.056 Sum_probs=25.1
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
++.+|||.|||.++||++|.++|+++|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G 61 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCG 61 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 357999999999999999999999987
No 315
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.33 E-value=0.0012 Score=50.71 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=26.5
Q ss_pred CCCcceEEe--ecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHF--FNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~--~NlP~~~tee~L~~lf~~~G 211 (211)
..|+++|+| .||+.++||++|+++|+++|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG 52 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCG 52 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcC
Confidence 468999999 66999999999999999987
No 316
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.32 E-value=0.003 Score=47.40 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=25.5
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+..+|||.|||.++||++|.++|+++|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G 50 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLD 50 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 3457999999999999999999999987
No 317
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.26 E-value=0.0023 Score=45.95 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=25.1
Q ss_pred CCcceEEeecCCCCCCHHHHH----hhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLT----DISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~----~lf~~~G 211 (211)
.+...|||.|||.++||++|+ ++|+++|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G 38 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHG 38 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccC
Confidence 345789999999999999999 9999876
No 318
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.24 E-value=0.0037 Score=46.91 Aligned_cols=27 Identities=7% Similarity=0.103 Sum_probs=24.8
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..+|||.|||.++||++|.++|+++|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G 42 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCT 42 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 457899999999999999999999886
No 319
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.22 E-value=0.0027 Score=51.34 Aligned_cols=30 Identities=7% Similarity=0.023 Sum_probs=27.2
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+++.+|||.|||.++||++|.++|+++|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 113 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFG 113 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 346688999999999999999999999987
No 320
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0089 Score=46.61 Aligned_cols=59 Identities=8% Similarity=-0.001 Sum_probs=50.2
Q ss_pred cCCCCCCCccccc------c-----ccceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeE
Q psy17775 67 YYGAPPAFEFERS------Y-----NSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLA 135 (211)
Q Consensus 67 v~nl~~~i~~d~L------F-----nnV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~ 135 (211)
+||||++|+..++ + +.+++|-..- --+-|+|+|.|...|-.|.=.|+|..+- |++|+
T Consensus 26 L~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-----------DH~GAivef~d~~~AgKasLaL~G~ef~-gr~Lr 93 (117)
T 2l9w_A 26 LFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-----------DFNGAIIIFRDSKFAAKMLMILNGSQFQ-GKVIR 93 (117)
T ss_dssp EECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-----------TTTEEEEECSCHHHHHHHHHHHSSEEET-TEEEE
T ss_pred EecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-----------CCCceEEEEccchhhHHHHhhcCCeeec-CeEEE
Confidence 8999999999986 2 1566665544 3688999999999999999999999999 99999
Q ss_pred Ee
Q psy17775 136 VA 137 (211)
Q Consensus 136 V~ 137 (211)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 321
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.12 E-value=0.0029 Score=48.90 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=25.8
Q ss_pred CCCcceEEeecCCCCCCHHHHH----hhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLT----DISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~----~lf~~~G 211 (211)
.+|+.+|||.|||.++++++|+ ++|+++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G 58 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQG 58 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCC
Confidence 4678999999999999999876 6899887
No 322
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.09 E-value=0.004 Score=47.90 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=25.4
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+..+|||.|||.++||++|+++|+++|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g 48 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHC 48 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 3457999999999999999999999886
No 323
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.07 E-value=0.0031 Score=47.71 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=24.6
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
....|+|.|||.++||++|+++|+++|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G 53 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENS 53 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhC
Confidence 346899999999999999999999887
No 324
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.04 E-value=0.0023 Score=47.72 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=23.8
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...|||.|||.++||++|.++|+++|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G 41 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAG 41 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 46899999999999999999999987
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.00 E-value=0.0049 Score=43.38 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=23.6
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRT 210 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~ 210 (211)
.+.+||+.|||.++||++|+++|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~ 29 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY 29 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC
Confidence 35789999999999999999999875
No 326
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.99 E-value=0.0024 Score=47.11 Aligned_cols=27 Identities=7% Similarity=0.246 Sum_probs=25.0
Q ss_pred CcceEEeecCCCCCCHHHHH---hhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLT---DISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~---~lf~~~G 211 (211)
+..+|||.|||.++||++|. ++|+++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G 43 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFG 43 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccC
Confidence 35789999999999999999 9999987
No 327
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.98 E-value=0.0041 Score=45.60 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=24.6
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...+||+.|||.++||++|.++|+++|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g 36 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCR 36 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 347899999999999999999999876
No 328
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.92 E-value=0.0066 Score=42.70 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=23.6
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRT 210 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~ 210 (211)
+..+|||.|||.++||++|.++|+++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC
Confidence 45789999999999999999999875
No 329
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.89 E-value=0.0048 Score=48.50 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=25.0
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+..+|+|.|||.++||++|+++|+++|
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G 71 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN 71 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 457899999999999999999999987
No 330
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.81 E-value=0.014 Score=45.49 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=53.9
Q ss_pred cCCCCCC-Cccccc---cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCC-HHHHHHHHHHh--CCceecCCceeEE
Q psy17775 67 YYGAPPA-FEFERS---YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGD-TLSAERAMGNL--SKTLLCNGKRLAV 136 (211)
Q Consensus 67 v~nl~~~-i~~d~L---Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D-~~~A~~Ai~~L--~g~~Lf~Gk~L~V 136 (211)
|.||+.. ++.+.| |+ .|.-|.+.+ . +.+|+|.|.| ...|..|+..| .|..|. |+.+++
T Consensus 23 v~~l~~~~~sredLke~F~~~G~V~~Vd~~~----------g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~-g~~~~~ 90 (121)
T 1owx_A 23 FSGDLDDQTCREDLHILFSNHGEIKWIDFVR----------G-AKEGIILFKEKAKEALGKAKDANNGNLQLR-NKEVTW 90 (121)
T ss_dssp EEESCCSSCCHHHHHHHTCSSCCEEEEECCT----------T-CSEEEEEESSCHHHHHHHHHHTTTSCBCTT-SSSEEE
T ss_pred EecCCCCcCCHHHHHHHHHhcCCEEEEEEec----------C-CCEEEEEECCChHHHHHHHHHhhcCCcEEe-CcEEEE
Confidence 6788877 777764 77 999999998 5 5689999999 89999999999 488888 888888
Q ss_pred eecCCccc
Q psy17775 137 AYSKQVFL 144 (211)
Q Consensus 137 ~~SK~~~i 144 (211)
........
T Consensus 91 evL~GeeE 98 (121)
T 1owx_A 91 EVLEGEVE 98 (121)
T ss_dssp EECCHHHH
T ss_pred EECCCHHH
Confidence 76655443
No 331
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=95.81 E-value=0.0053 Score=48.72 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=24.1
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
....|||.|||.++||++|.++|+++|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G 80 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIG 80 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHC
Confidence 457999999999999999999999987
No 332
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.77 E-value=0.0057 Score=44.64 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=24.7
Q ss_pred CcceEEeecCCCCC------CHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDI------TEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~------tee~L~~lf~~~G 211 (211)
++.+|+|.|||.++ |+++|.++|+++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G 46 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG 46 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC
Confidence 46799999999999 8899999999987
No 333
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.75 E-value=0.0078 Score=47.02 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=25.0
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
...+|+|.|||.++||++|+++|+++|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G 69 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCT 69 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 457899999999999999999999987
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=95.67 E-value=0.0057 Score=49.92 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=26.0
Q ss_pred CCCCcceE--EeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLL--HFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~L--h~~NlP~~~tee~L~~lf~~~G 211 (211)
..+|+++| +|.|||.++||++|.++|+++|
T Consensus 40 ~~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG 71 (164)
T 1sjr_A 40 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFG 71 (164)
T ss_dssp CCCCCCEEEEEECSCCSCCCHHHHHHHHHHHS
T ss_pred CCCCCceEEEEEeCcCCCCCHHHHHHHHHhcC
Confidence 35677775 5889999999999999999987
No 335
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=95.43 E-value=0.012 Score=45.58 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+..+|+|.|||.++||++|+++|++++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~ 67 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE 67 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999999863
No 336
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.24 E-value=0.015 Score=41.41 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=24.6
Q ss_pred CCCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
-..|+.+|||.|+ ++||++|.++|+++|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G 38 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFG 38 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCC
Confidence 3457789999995 999999999999987
No 337
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.16 E-value=0.01 Score=54.58 Aligned_cols=29 Identities=17% Similarity=-0.004 Sum_probs=26.6
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..|+.+|||.|||.++|+++|.++|+++|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G 127 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYG 127 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 35678999999999999999999999987
No 338
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.11 E-value=0.013 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.009 Sum_probs=23.8
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
..+|||.|||.++||++|+++|+++|
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G 93 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLG 93 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHC
Confidence 45799999999999999999999987
No 339
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.07 E-value=0.018 Score=44.81 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=27.2
Q ss_pred CCCcceEEeecCCCC-CCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPD-ITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~-~tee~L~~lf~~~G 211 (211)
.++..+|+|.|++.+ +|+++|+++|+++|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G 44 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHG 44 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcC
Confidence 567899999999999 99999999999987
No 340
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=94.95 E-value=0.011 Score=43.93 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=25.0
Q ss_pred CcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 185 PSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 185 Ps~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.|.-|++-||+..+||++|++||.+||
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G 32 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHG 32 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHS
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhC
Confidence 466799999999999999999999987
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=94.92 E-value=0.012 Score=47.93 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=24.6
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
+.+||+.|||.++|+++|.++|+++|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G 134 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKG 134 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCC
Confidence 46899999999999999999999997
No 342
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=94.39 E-value=0.035 Score=41.92 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=24.2
Q ss_pred CCCcceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.+|+.+|||.|+ ++||++|.++|+++|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G 62 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFG 62 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccC
Confidence 457889999995 799999999999987
No 343
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.05 E-value=0.035 Score=41.50 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=23.2
Q ss_pred cceEEeecCCCCCCHHHHHhhhccC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRT 210 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~ 210 (211)
..+|+|.|||.++||++|+++|+++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~ 40 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL 40 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC
Confidence 4689999999999999999999875
No 344
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.17 E-value=0.034 Score=47.78 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=26.4
Q ss_pred CCCcceEEeecCCCCC---------CHHHHHhhhccCC
Q psy17775 183 QPPSQLLHFFNAPPDI---------TEEQLTDISGRTD 211 (211)
Q Consensus 183 ~pPs~~Lh~~NlP~~~---------tee~L~~lf~~~G 211 (211)
.+++.+|||.|||.++ ||++|+++|+++|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG 168 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG 168 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccC
Confidence 4568899999999998 7999999999998
No 345
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.48 E-value=0.15 Score=38.98 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=46.5
Q ss_pred ccCCCCCCCccccc---cc--------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCcee
Q psy17775 66 DYYGAPPAFEFERS---YN--------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRL 134 (211)
Q Consensus 66 ~v~nl~~~i~~d~L---Fn--------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L 134 (211)
.|.|||+.++.|.| |. .|..|+.+. +.|+|.|.|...|++.+. -.-+.|+ |.+|
T Consensus 12 ~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------------~~AvItF~d~~va~rVL~-k~~H~L~-~~~L 76 (104)
T 2dhx_A 12 EVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------------CGGVLTFREPADAERVLA-QADHELH-GAQL 76 (104)
T ss_dssp EEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------------TEEEEEESSHHHHHHHHT-CSCCBSS-SSBC
T ss_pred EEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------------CcEEEEEcChHHHHHHhc-CCcceec-CeEE
Confidence 38999999998875 65 688888766 799999999999999885 2367788 8777
Q ss_pred EEe
Q psy17775 135 AVA 137 (211)
Q Consensus 135 ~V~ 137 (211)
.|.
T Consensus 77 sV~ 79 (104)
T 2dhx_A 77 SLR 79 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 346
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.72 E-value=0.18 Score=36.98 Aligned_cols=30 Identities=10% Similarity=-0.009 Sum_probs=24.2
Q ss_pred CCCCcceEEeecCCCCC-----------CHHHHHhhhccCC
Q psy17775 182 IQPPSQLLHFFNAPPDI-----------TEEQLTDISGRTD 211 (211)
Q Consensus 182 i~pPs~~Lh~~NlP~~~-----------tee~L~~lf~~~G 211 (211)
...|+++|.|.|+.... +|++|+++|+++|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G 51 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG 51 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC
Confidence 45689999999994433 2689999999987
No 347
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=88.26 E-value=0.22 Score=37.77 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.0
Q ss_pred CCcceEEeecCC--CCC---CHHHHHhhhccCC
Q psy17775 184 PPSQLLHFFNAP--PDI---TEEQLTDISGRTD 211 (211)
Q Consensus 184 pPs~~Lh~~NlP--~~~---tee~L~~lf~~~G 211 (211)
+||++|.+.|+- .++ .+++|++.|+++|
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G 50 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG 50 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccC
Confidence 589999999994 333 3689999999998
No 348
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.16 E-value=1.2 Score=33.81 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=47.0
Q ss_pred cccc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCccc
Q psy17775 78 RSYN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFL 144 (211)
Q Consensus 78 ~LFn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i 144 (211)
.||. .....-.|+ + =.-..|-|.++++|.+|-..|++..+. |++|+|-|.....+
T Consensus 29 ~Lf~~~~~~~tF~~lk----------S-FRRirv~F~~~~~A~~AR~~Lh~~~f~-g~~~r~YFgq~~~~ 86 (104)
T 1wey_A 29 SLFRTYDKDTTFQYFK----------S-FKRVRINFSNPLSAADARLRLHKTEFL-GKEMKLYFAQTLHI 86 (104)
T ss_dssp HHHHTTCSSCEEEEET----------T-TTEEEEECSSTTHHHHHHHTSTTSEET-TEECEEECCCCSSC
T ss_pred HHHHhhCcCcceeecC----------c-ceEEEEEeCChHHHHHHHHHhccceec-CceeEEEecCCCCC
Confidence 3566 677888888 5 458899999999999999999999999 99999999985443
No 349
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=80.19 E-value=4.3 Score=29.77 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=49.3
Q ss_pred ccCCCCCCCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecC
Q psy17775 66 DYYGAPPAFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCN 130 (211)
Q Consensus 66 ~v~nl~~~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~ 130 (211)
.|.+||+.++.+.++. .+....+.. +++|..++ ...-|-|.|.+.+.+..-.+.++|+.+.|
T Consensus 5 VIRrLPP~LteeeF~~~l~~~~~~d~~~fv~--G~~s~~~~-~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 5 VIRRLPPTLTKEQLQEHLQPMPEHDYFEFFS--NDTSLYPH-MYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp EEEEECTTCCHHHHHHHHCSCCCEEEEEEEE--SCCSSTTC-CCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred EEeCCCCCCCHHHHHHHhcCcccceEEEEeC--CccCCCCC-cceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 3678899999998766 455555544 66666554 47899999999999999999999999995
No 350
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=79.00 E-value=1.5 Score=33.11 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=23.5
Q ss_pred cceEEeecCCCCCCHHHHHhhhccCC
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISGRTD 211 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~~~G 211 (211)
.++||+ +.|+++.-.||.++|+.+|
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg 40 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG 40 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC
Confidence 479999 9999999999999999987
No 351
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.75 E-value=3.1 Score=30.40 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=14.9
Q ss_pred CCCCHHHHHhhhccCC
Q psy17775 196 PDITEEQLTDISGRTD 211 (211)
Q Consensus 196 ~~~tee~L~~lf~~~G 211 (211)
+++||++|+++|+++|
T Consensus 27 ~~~te~~L~~~F~~~G 42 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYG 42 (100)
T ss_dssp CSCCHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHhcC
Confidence 6799999999999998
No 352
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=60.26 E-value=7.9 Score=29.86 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=45.5
Q ss_pred cCCCCCCCccccc--cc---cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCC-ceeEEeecC
Q psy17775 67 YYGAPPAFEFERS--YN---SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNG-KRLAVAYSK 140 (211)
Q Consensus 67 v~nl~~~i~~d~L--Fn---nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~G-k~L~V~~SK 140 (211)
|||.++...-.-| |. +|+++..- ....-.-|+|.+..+|++|+. .||..|- | --+-|....
T Consensus 29 VFGFp~~~~~~VL~~F~~~G~Iv~~~~~-----------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~-g~~mIGV~p~~ 95 (119)
T 1wwh_A 29 VFGFPQASASYILLQFAQYGNILKHVMS-----------NTGNWMHIRYQSKLQARKALS-KDGRIFG-ESIMIGVKPCI 95 (119)
T ss_dssp EECCCGGGHHHHHHHHHTTSCEEEEEEC-----------SSSSEEEEEESSHHHHHHHHT-TTTCEET-TTEECEEEECC
T ss_pred EECCCHHHHHHHHHHHHhhCcEEEeccC-----------CCCCeEEEEeCCHHHHHHHHH-hCCeEec-CCEEEEEEECC
Confidence 7777765433322 44 88888862 235788999999999999996 5888877 5 445566555
Q ss_pred Ccccc
Q psy17775 141 QVFLS 145 (211)
Q Consensus 141 ~~~i~ 145 (211)
...+.
T Consensus 96 d~~vi 100 (119)
T 1wwh_A 96 DKNVM 100 (119)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 55554
No 353
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=57.69 E-value=18 Score=26.89 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=48.4
Q ss_pred ccCCCCCCCccccccc------cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecC
Q psy17775 66 DYYGAPPAFEFERSYN------SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCN 130 (211)
Q Consensus 66 ~v~nl~~~i~~d~LFn------nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~ 130 (211)
.|..||+.++.+.++. .+.. +-..+.+.|..++ ...-|-|.|.+.+....-.+..+|..+.|
T Consensus 13 VIRrLPP~Ltee~F~~~l~~~~~~d~--~~fv~G~~s~~~~-~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 13 VIRRLPPGLTKEQLEEQLRPLPAHDY--FEFFAADLSLYPH-LYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp EEECCCSCSCHHHHTTTTSCCSSEEE--CCCCCCCSSSCCS-CCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred EEeCCCCCCCHHHHHHHhCCcCccce--EEEeCCccCCCCC-cceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4788999999998776 3222 3334466666555 37889999999999999999999999985
No 354
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=53.15 E-value=2.4 Score=32.13 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=40.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccccCCCCccCCCCCCcccccccCcccccC
Q psy17775 103 EGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFM 172 (211)
Q Consensus 103 ~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~~~~~~~~l~dgs~~~kdfs~s~~nRf~ 172 (211)
.|+|||.|.+.....+||+.|=++ |..+|+|..--+-.+..+..| +|....|-.|-+-+.|.|+
T Consensus 46 dgqamirfqnsdeqrlaiqkllnh---nnnklqieirgqicdvistip---edeeknywnyikfkknefr 109 (129)
T 4eyt_A 46 DGQAMIRFQNSDEQRLAIQKLLNH---NNNKLQIEIRGQICDVISTIP---EDEEKNYWNYIKFKKNEFR 109 (129)
T ss_dssp SSCEEEEESSHHHHHHHHHHHEET---TTTEEEEEETTEEEEEECCCC---HHHHHHHHHHHHHHCC---
T ss_pred cCeeEEEecCChHHHHHHHHHHhc---CCCEEEEEEcceeeeeeecCC---chhhhchhhheeehhhHHH
Confidence 499999999999999999987553 377888887766655431111 2223335555555555443
No 355
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=57.88 E-value=2.9 Score=31.98 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecCCcccc
Q psy17775 102 PEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLS 145 (211)
Q Consensus 102 k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK~~~i~ 145 (211)
|.|+|||.|.+.....+||+.|=++ |..+|.|..--+-.+.
T Consensus 76 kegqamirfqnsdeqrlaiqkllnh---nnnklqieirgqicdv 116 (137)
T 2lsl_A 76 KEGQAMIRFQNSDEQRLAIQKLLNH---NNNKLQIEIRGQICDV 116 (137)
Confidence 3799999999999999999877553 3677777766665544
No 356
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=50.68 E-value=20 Score=24.13 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=33.6
Q ss_pred cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceecCCceeEEeecC
Q psy17775 82 SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSK 140 (211)
Q Consensus 82 nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf~Gk~L~V~~SK 140 (211)
+|=+|.+.. .+++|+..... |+.++..|++..+- |++++|..++
T Consensus 32 ~IG~I~i~d-------------~~s~v~v~~~~-~~~~~~~l~~~~i~-g~~~~v~~~~ 75 (76)
T 2g0c_A 32 DIGIITIMD-------------NASYVEILNGK-GPHVLKVMKNTTVK-GKQLKVNKAN 75 (76)
T ss_dssp GEEEEEECS-------------SCEEEEECTTC-HHHHHHHHTTCCC----CCCEEECC
T ss_pred hccEEEEeC-------------CcEEEEECHHH-HHHHHHHhccccCc-CceEEEEECC
Confidence 677777766 68999887654 77899999999999 9999998765
No 357
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=42.58 E-value=14 Score=27.49 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.6
Q ss_pred cceEEeecCCCCCCHHHHHhhhc
Q psy17775 186 SQLLHFFNAPPDITEEQLTDISG 208 (211)
Q Consensus 186 s~~Lh~~NlP~~~tee~L~~lf~ 208 (211)
|--|.|-.|||++|||++.+.++
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~ 31 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLR 31 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhC
Confidence 45689999999999999988765
No 358
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=36.25 E-value=16 Score=27.50 Aligned_cols=49 Identities=8% Similarity=0.165 Sum_probs=35.9
Q ss_pred CCCCCC---ccccccc--cceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceec
Q psy17775 69 GAPPAF---EFERSYN--SPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLC 129 (211)
Q Consensus 69 nl~~~i---~~d~LFn--nV~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf 129 (211)
+.|+.. +..+||. -=+.|+-+- ..+|||.|.++++|..|+..++....|
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv~I~Wid------------DTsAlvvf~~~~~a~~al~~i~k~~~y 75 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNIQISWID------------DTSAFVSLSQPEQVQIAVNTSKYAESY 75 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSCCCEEEE------------TTEEEEECSCHHHHHHHHHHHHHCCSS
T ss_pred eCChhhhhHHHHHHhhccCCEEEEEEc------------CCeEEEEecCHHHHHHHHHhcccCCce
Confidence 556543 3445677 345667777 589999999999999999998755555
No 359
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=31.90 E-value=22 Score=26.74 Aligned_cols=43 Identities=7% Similarity=0.134 Sum_probs=33.4
Q ss_pred cccccccc--ceEeeEecCCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhCCceec
Q psy17775 75 EFERSYNS--PVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLC 129 (211)
Q Consensus 75 ~~d~LFnn--V~rvK~l~~~~~~~~~~~~k~g~AlVqm~D~~~A~~Ai~~L~g~~Lf 129 (211)
+..+||.. =+.|+-+- ..+|||.|.++++|..|+..+.....|
T Consensus 21 Di~~lFs~fggv~I~Wid------------DTsAlvvf~~~~~a~~al~~i~~~~~y 65 (101)
T 3ctr_A 21 DLYQLFSAFGNIQISWID------------DTSAFVSLSQPEQVKIAVNTSKYAESY 65 (101)
T ss_dssp HHHHHTTTSEEEEEEEEE------------TTEEEEEEEEECHHHHHHHHHTTCSSC
T ss_pred HHHHHHhccCCEEEEEEc------------CCeEEEEecCHHHHHHHHHhcccCCce
Confidence 33456773 35566666 589999999999999999999876666
No 360
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.82 E-value=28 Score=26.87 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=21.9
Q ss_pred ceEEeecCCCCCCHHHHHhhhccC
Q psy17775 187 QLLHFFNAPPDITEEQLTDISGRT 210 (211)
Q Consensus 187 ~~Lh~~NlP~~~tee~L~~lf~~~ 210 (211)
++|-++|||..++.+.|+.+.+++
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~ 45 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEE 45 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHhhh
Confidence 689999999999999999988765
No 361
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=23.61 E-value=40 Score=24.79 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=22.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhCCce
Q psy17775 102 PEGCCMVQMGDTLSAERAMGNLSKTL 127 (211)
Q Consensus 102 k~g~AlVqm~D~~~A~~Ai~~L~g~~ 127 (211)
..+.|++.|.|+.+|-.|.++|-...
T Consensus 51 d~dr~ifmf~DGs~a~e~kdfL~~Q~ 76 (90)
T 3off_A 51 DDNRAIFLFKDGTQAWDAKDFLIEQE 76 (90)
T ss_dssp ETTEEEEEESSGGGHHHHHHHHTTST
T ss_pred cCCEEEEEEcChHHHHHHHHHHhcCc
Confidence 36899999999999999999997644
No 362
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.27 E-value=74 Score=22.10 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=10.7
Q ss_pred CCCeEEEEeCCHH
Q psy17775 102 PEGCCMVQMGDTL 114 (211)
Q Consensus 102 k~g~AlVqm~D~~ 114 (211)
..|+++|+|.|..
T Consensus 40 ~~gtC~V~F~D~s 52 (66)
T 2eqj_A 40 LKQSCFIIFEDSS 52 (66)
T ss_dssp TTTEEEEEETTTE
T ss_pred CCcEEEEEEccCC
Confidence 3599999999863
No 363
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus}
Probab=20.57 E-value=79 Score=23.18 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=22.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCce
Q psy17775 103 EGCCMVQMGDTLSAERAMGNLSKTL 127 (211)
Q Consensus 103 ~g~AlVqm~D~~~A~~Ai~~L~g~~ 127 (211)
-+.|+..|.|+.+|-.|.++|-...
T Consensus 51 ~dr~ifm~~DGs~awe~kdFL~~Q~ 75 (89)
T 3ofh_A 51 SDRAIFMLRDGSYAWEIKDFLVSQD 75 (89)
T ss_dssp TTEEEEEESCGGGHHHHHHHHHTST
T ss_pred CCEEEEEEcChHHHHHHHHHHHcCc
Confidence 5899999999999999999996543
Done!