Your job contains 1 sequence.
>psy17775
MSAPTKLNVYKNDSESWDYTQPTLGRTKDGPPSRPGPLLPEPPRRLPTPSGPPSMPNYRG
GYPDDDYYGAPPAFEFERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAM
GNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKN
RIQPPSQLLHFFNAPPDITEEQLTDISGRTD
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17775
(211 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003435 - symbol:sm "smooth" species:7227 "Drosoph... 304 1.9e-32 2
ZFIN|ZDB-GENE-040426-2707 - symbol:hnrnpl2 "heterogeneous... 236 2.1e-27 2
ZFIN|ZDB-GENE-040426-710 - symbol:hnrpl "heterogeneous nu... 229 9.6e-26 2
UNIPROTKB|E1BIB4 - symbol:HNRNPL "Uncharacterized protein... 225 5.0e-25 2
UNIPROTKB|E2R944 - symbol:HNRNPL "Uncharacterized protein... 225 5.0e-25 2
UNIPROTKB|P14866 - symbol:HNRNPL "Heterogeneous nuclear r... 225 5.1e-25 2
MGI|MGI:104816 - symbol:Hnrnpl "heterogeneous nuclear rib... 223 8.1e-25 2
UNIPROTKB|F2Z3R2 - symbol:Hnrnpl "Protein Hnrnpl" species... 223 8.1e-25 2
UNIPROTKB|F1LQ48 - symbol:Hnrnpl "Protein Hnrnpl" species... 223 8.6e-25 2
UNIPROTKB|F1LPP9 - symbol:Hnrnpl "Protein Hnrnpl" species... 223 1.0e-24 2
UNIPROTKB|I3L8B8 - symbol:HNRPLL "Uncharacterized protein... 209 2.9e-24 2
UNIPROTKB|I3LG16 - symbol:HNRPLL "Uncharacterized protein... 209 4.5e-24 2
UNIPROTKB|B7WPG3 - symbol:HNRPLL "Heterogeneous nuclear r... 208 4.5e-24 2
UNIPROTKB|F1N7G0 - symbol:HNRPLL "Uncharacterized protein... 208 5.9e-24 2
UNIPROTKB|D6W592 - symbol:HNRPLL "Heterogeneous nuclear r... 208 6.0e-24 2
UNIPROTKB|Q8WVV9 - symbol:HNRPLL "Heterogeneous nuclear r... 208 6.0e-24 2
UNIPROTKB|J9P3Y8 - symbol:HNRPLL "Uncharacterized protein... 208 6.1e-24 2
MGI|MGI:1919942 - symbol:Hnrpll "heterogeneous nuclear ri... 208 8.4e-24 2
RGD|1305861 - symbol:Hnrpll "heterogeneous nuclear ribonu... 208 8.4e-24 2
UNIPROTKB|F1P0T4 - symbol:HNRPLL "Uncharacterized protein... 203 1.2e-23 2
UNIPROTKB|Q5JB52 - symbol:HNRPLL "Stromal RNA regulating ... 208 8.1e-23 2
UNIPROTKB|I3LPU8 - symbol:HNRNPL "Uncharacterized protein... 225 1.1e-18 1
RGD|1359551 - symbol:Fblim1 "filamin binding LIM protein ... 223 1.7e-18 1
UNIPROTKB|F1LZ79 - symbol:F1LZ79 "Uncharacterized protein... 149 5.9e-16 2
UNIPROTKB|F1M040 - symbol:F1M040 "Uncharacterized protein... 149 6.0e-16 2
RGD|71059 - symbol:Hnrnpl "heterogeneous nuclear ribonucl... 179 7.9e-14 1
WB|WBGene00016624 - symbol:C44B7.2 species:6239 "Caenorha... 166 5.0e-13 2
UNIPROTKB|H7C464 - symbol:HNRPLL "Heterogeneous nuclear r... 169 9.1e-13 1
DICTYBASE|DDB_G0278105 - symbol:DDB_G0278105 "heterogeneo... 135 6.6e-11 2
ZFIN|ZDB-GENE-050522-492 - symbol:ptbp1a "polypyrimidine ... 126 2.3e-10 2
ZFIN|ZDB-GENE-091116-1 - symbol:ptbp3 "polypyrimidine tra... 130 1.8e-09 2
UNIPROTKB|F1S6R7 - symbol:PTBP1 "Polypyrimidine tract-bin... 122 1.8e-08 2
UNIPROTKB|Q29099 - symbol:PTBP1 "Polypyrimidine tract-bin... 122 1.8e-08 2
UNIPROTKB|P26599 - symbol:PTBP1 "Polypyrimidine tract-bin... 121 2.7e-08 2
ZFIN|ZDB-GENE-060810-49 - symbol:ptbp2b "polypyrimidine t... 123 3.0e-08 2
ZFIN|ZDB-GENE-030131-9796 - symbol:ptbp1b "polypyrimidine... 121 3.6e-08 2
UNIPROTKB|F1P5K0 - symbol:PTBP1 "Uncharacterized protein"... 120 5.6e-08 2
UNIPROTKB|E1BVR1 - symbol:PTBP1 "Uncharacterized protein"... 120 5.7e-08 2
ZFIN|ZDB-GENE-050320-141 - symbol:ptbp2a "polypyrimidine ... 121 8.1e-08 2
UNIPROTKB|F1LM18 - symbol:Ptbp1 "Polypyrimidine tract-bin... 119 1.0e-07 2
UNIPROTKB|Q6P736 - symbol:Ptbp1 "Polypyrimidine tract bin... 119 1.0e-07 2
UNIPROTKB|Q8WN55 - symbol:PTBP1 "Polypyrimidine tract-bin... 118 1.6e-07 2
UNIPROTKB|J9P5T5 - symbol:PTBP1 "Uncharacterized protein"... 118 1.9e-07 2
UNIPROTKB|F1PCJ7 - symbol:PTBP1 "Uncharacterized protein"... 118 1.9e-07 2
UNIPROTKB|F1S549 - symbol:LOC100515203 "Uncharacterized p... 118 2.3e-07 2
UNIPROTKB|I3LP39 - symbol:LOC100515203 "Uncharacterized p... 118 2.4e-07 2
UNIPROTKB|I3LDE4 - symbol:LOC100515203 "Uncharacterized p... 118 2.5e-07 2
RGD|62047 - symbol:Ptbp1 "polypyrimidine tract binding pr... 116 4.0e-07 2
MGI|MGI:1923334 - symbol:Ptbp3 "polypyrimidine tract bind... 122 4.2e-07 2
DICTYBASE|DDB_G0275365 - symbol:DDB_G0275365 "Heterogeneo... 126 5.2e-07 1
UNIPROTKB|Q9UKA9 - symbol:PTBP2 "Polypyrimidine tract-bin... 118 5.3e-07 2
MGI|MGI:1860489 - symbol:Ptbp2 "polypyrimidine tract bind... 118 5.3e-07 2
RGD|1359267 - symbol:Ptbp2 "polypyrimidine tract binding ... 118 5.3e-07 2
UNIPROTKB|F1NRD6 - symbol:PTBP2 "Uncharacterized protein"... 118 5.3e-07 2
UNIPROTKB|E2RSK4 - symbol:PTBP2 "Uncharacterized protein"... 118 5.3e-07 2
UNIPROTKB|B4DSS8 - symbol:PTBP2 "Polypyrimidine tract-bin... 118 5.8e-07 2
UNIPROTKB|F1PXP9 - symbol:PTBP3 "Uncharacterized protein"... 121 7.1e-07 2
UNIPROTKB|F1MPG6 - symbol:F1MPG6 "Uncharacterized protein... 121 7.2e-07 2
UNIPROTKB|Q06A95 - symbol:ROD1 "ROD1" species:9823 "Sus s... 121 7.2e-07 2
RGD|621671 - symbol:Ptbp3 "polypyrimidine tract binding p... 121 7.2e-07 2
UNIPROTKB|A6NLN1 - symbol:PTBP1 "Polypyrimidine tract-bin... 121 7.5e-07 1
UNIPROTKB|O95758 - symbol:PTBP3 "Polypyrimidine tract-bin... 121 8.4e-07 2
TAIR|locus:2018630 - symbol:PTB3 "polypyrimidine tract-bi... 115 4.4e-06 2
UNIPROTKB|F1S548 - symbol:LOC100739008 "Uncharacterized p... 118 7.9e-06 1
RGD|727953 - symbol:Smptb "polypyrimidine tract-binding p... 113 3.4e-05 2
UNIPROTKB|F1LY02 - symbol:F1LY02 "Uncharacterized protein... 99 0.00038 2
>FB|FBgn0003435 [details] [associations]
symbol:sm "smooth" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IMP] [GO:0008343 "adult
feeding behavior" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0007411
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0008343
KO:K13159 GeneTree:ENSGT00550000074508 UniGene:Dm.7773 GeneID:37254
KEGG:dme:Dmel_CG9218 CTD:37254 FlyBase:FBgn0003435 ChiTaRS:sm
GenomeRNAi:37254 NextBio:802755 EMBL:BT011352 RefSeq:NP_001027439.2
SMR:Q6NND8 STRING:Q6NND8 EnsemblMetazoa:FBtr0301609 Uniprot:Q6NND8
Length = 480
Score = 304 (112.1 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 56/104 (53%), Positives = 78/104 (75%)
Query: 103 EGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKD 162
EG MVQMGD ++ ER + +L+ + G ++ +A+SKQ FLS+V +P+ LPD S SFK+
Sbjct: 283 EGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKE 342
Query: 163 FTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+TGS+ NRF++P A KNRIQPPS++LHFFN PP +TE+QL I
Sbjct: 343 YTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTEDQLIGI 386
Score = 72 (30.4 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 4 PTKLNVYKNDSE-SWDYTQPT 23
P KLNVYKN+ + SWDYT T
Sbjct: 158 PEKLNVYKNEPDTSWDYTLST 178
>ZFIN|ZDB-GENE-040426-2707 [details] [associations]
symbol:hnrnpl2 "heterogeneous nuclear
ribonucleoprotein L2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2707 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG326285
HOVERGEN:HBG105786 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOGENOM:HOG000293298 EMBL:BX088654 EMBL:BC154328 IPI:IPI00617335
UniGene:Dr.32199 SMR:A8KC22 STRING:A8KC22
Ensembl:ENSDART00000142334 Uniprot:A8KC22
Length = 522
Score = 236 (88.1 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 50/101 (49%), Positives = 63/101 (62%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G MV+MGD + +RA+ +L+ L N K L + SKQ + YEL DG+ SFKD+
Sbjct: 350 GAAMVEMGDCYAVDRAISHLNNNFLFNQK-LNLCVSKQQAIMP-GQSYELDDGTNSFKDY 407
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLT 204
GSR NRF P+ A KNRIQ PS +LHFFNA P+ T E T
Sbjct: 408 HGSRNNRFATPEQAAKNRIQHPSNVLHFFNAVPEATPEMFT 448
Score = 101 (40.6 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTKD 29
PT+LNV+KND ++WDYT P+LG T+D
Sbjct: 210 PTRLNVFKNDQDTWDYTNPSLG-TQD 234
>ZFIN|ZDB-GENE-040426-710 [details] [associations]
symbol:hnrpl "heterogeneous nuclear
ribonucleoprotein L" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-710 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BX547938 HOVERGEN:HBG105786
KO:K13159 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOGENOM:HOG000293298 OMA:RPTSVKV OrthoDB:EOG4RFKSD EMBL:BC045336
IPI:IPI00502192 RefSeq:NP_957393.1 UniGene:Dr.76170 SMR:Q7ZW09
STRING:Q7ZW09 Ensembl:ENSDART00000051184 GeneID:394074
KEGG:dre:394074 CTD:394074 InParanoid:Q7ZW09 NextBio:20815031
Uniprot:Q7ZW09
Length = 536
Score = 229 (85.7 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
Identities = 49/103 (47%), Positives = 66/103 (64%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G MV+MGD + +RA+ +L+ T+L G++L V SKQ + Y+L DGS SFKDF
Sbjct: 367 GAAMVEMGDCYAVDRAVSHLNNTMLF-GQKLNVCVSKQQAIMP-GQSYQLEDGSCSFKDF 424
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
G R NRF + A KNRIQ PS +LHFFN+ PD + E ++I
Sbjct: 425 HGYRNNRFTTSEQAAKNRIQQPSNVLHFFNSQPDSSVEAFSEI 467
Score = 93 (37.8 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 4 PTKLNVYKNDSESWDYTQPTL-GRTKD 29
PT+LNV+KND ++WDYT P L G+ D
Sbjct: 209 PTRLNVFKNDQDTWDYTNPNLSGQDAD 235
>UNIPROTKB|E1BIB4 [details] [associations]
symbol:HNRNPL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045120 "pronucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0044212 GO:GO:0045120 KO:K13159 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:3191 OMA:RPTSVKV EMBL:DAAA02047038
IPI:IPI00697891 RefSeq:NP_001178959.1 UniGene:Bt.21801 PRIDE:E1BIB4
Ensembl:ENSBTAT00000032051 GeneID:504520 KEGG:bta:504520
NextBio:20866705 Uniprot:E1BIB4
Length = 588
Score = 225 (84.3 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
Identities = 54/130 (41%), Positives = 75/130 (57%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G++L V
Sbjct: 396 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKLNV 450
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 451 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 509
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 510 EVTEENFFEI 519
Score = 92 (37.4 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTKD 29
PT+LNV+KND ++WDYT P L D
Sbjct: 269 PTRLNVFKNDQDTWDYTNPNLSGQGD 294
>UNIPROTKB|E2R944 [details] [associations]
symbol:HNRNPL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045120 "pronucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0044212
GO:GO:0045120 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:RPTSVKV EMBL:AAEX03000969 Ensembl:ENSCAFT00000009103
Uniprot:E2R944
Length = 588
Score = 225 (84.3 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
Identities = 54/130 (41%), Positives = 75/130 (57%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G++L V
Sbjct: 396 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKLNV 450
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 451 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 509
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 510 EVTEENFFEI 519
Score = 92 (37.4 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTKD 29
PT+LNV+KND ++WDYT P L D
Sbjct: 269 PTRLNVFKNDQDTWDYTNPNLSGQGD 294
>UNIPROTKB|P14866 [details] [associations]
symbol:HNRNPL "Heterogeneous nuclear ribonucleoprotein L"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 EMBL:CH471126 GO:GO:0003723 GO:GO:0044212
GO:GO:0030529 GO:GO:0000398 GO:GO:0045120 eggNOG:NOG326285
HOVERGEN:HBG105786 KO:K13159 TIGRFAMs:TIGR01649
HOGENOM:HOG000293298 EMBL:AB044547 EMBL:AK292115 EMBL:AC008982
EMBL:X16135 IPI:IPI00027834 PIR:A33616 RefSeq:NP_001005335.1
RefSeq:NP_001524.2 UniGene:Hs.644906 PDB:3R27 PDB:3TO8 PDBsum:3R27
PDBsum:3TO8 ProteinModelPortal:P14866 SMR:P14866 IntAct:P14866
MINT:MINT-1422378 STRING:P14866 PhosphoSite:P14866 DMDM:215274006
REPRODUCTION-2DPAGE:IPI00027834 SWISS-2DPAGE:P14866 PaxDb:P14866
PRIDE:P14866 DNASU:3191 Ensembl:ENST00000221419
Ensembl:ENST00000388749 Ensembl:ENST00000388750 GeneID:3191
KEGG:hsa:3191 UCSC:uc021uuh.1 CTD:3191 GeneCards:GC19M039327
H-InvDB:HIX0174642 HGNC:HGNC:5045 HPA:CAB016326 MIM:164021
MIM:603083 neXtProt:NX_P14866 PharmGKB:PA162391389
InParanoid:P14866 OMA:RPTSVKV OrthoDB:EOG4RFKSD ChiTaRS:HNRNPL
GenomeRNAi:3191 NextBio:12694 ArrayExpress:P14866 Bgee:P14866
CleanEx:HS_HNRNPL Genevestigator:P14866 GermOnline:ENSG00000104824
Uniprot:P14866
Length = 589
Score = 225 (84.3 bits), Expect = 5.1e-25, Sum P(2) = 5.1e-25
Identities = 54/130 (41%), Positives = 75/130 (57%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G++L V
Sbjct: 397 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKLNV 451
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 452 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 510
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 511 EVTEENFFEI 520
Score = 92 (37.4 bits), Expect = 5.1e-25, Sum P(2) = 5.1e-25
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTKD 29
PT+LNV+KND ++WDYT P L D
Sbjct: 270 PTRLNVFKNDQDTWDYTNPNLSGQGD 295
>MGI|MGI:104816 [details] [associations]
symbol:Hnrnpl "heterogeneous nuclear ribonucleoprotein L"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0044212 "transcription regulatory region
DNA binding" evidence=ISO] [GO:0045120 "pronucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104816 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0044212 GO:GO:0030529 GO:GO:0045120
eggNOG:NOG326285 HOVERGEN:HBG105786 KO:K13159 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOGENOM:HOG000293298 CTD:3191
OrthoDB:EOG4RFKSD ChiTaRS:HNRNPL EMBL:BC027206 EMBL:BC030461
EMBL:BC099683 EMBL:AB009392 IPI:IPI00620362 RefSeq:NP_796275.3
UniGene:Mm.9043 PDB:3S01 PDB:3TYT PDBsum:3S01 PDBsum:3TYT
ProteinModelPortal:Q8R081 SMR:Q8R081 IntAct:Q8R081 STRING:Q8R081
PhosphoSite:Q8R081 REPRODUCTION-2DPAGE:Q8R081 PaxDb:Q8R081
PRIDE:Q8R081 Ensembl:ENSMUST00000038572 Ensembl:ENSMUST00000174548
GeneID:15388 KEGG:mmu:15388 UCSC:uc009fzz.2 NextBio:288066
Bgee:Q8R081 CleanEx:MM_HNRNPL Genevestigator:Q8R081
GermOnline:ENSMUSG00000015165 Uniprot:Q8R081
Length = 586
Score = 223 (83.6 bits), Expect = 8.1e-25, Sum P(2) = 8.1e-25
Identities = 53/130 (40%), Positives = 75/130 (57%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G+++ V
Sbjct: 394 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKMNV 448
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 449 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 507
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 508 EVTEENFFEI 517
Score = 92 (37.4 bits), Expect = 8.1e-25, Sum P(2) = 8.1e-25
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTKD 29
PT+LNV+KND ++WDYT P L D
Sbjct: 267 PTRLNVFKNDQDTWDYTNPNLSGQGD 292
>UNIPROTKB|F2Z3R2 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:3191
UniGene:Rn.33873 GeneID:80846 KEGG:rno:80846 NextBio:614884
IPI:IPI00364061 RefSeq:NP_116008.2 ProteinModelPortal:F2Z3R2
SMR:F2Z3R2 PRIDE:F2Z3R2 Ensembl:ENSRNOT00000027494 Uniprot:F2Z3R2
Length = 586
Score = 223 (83.6 bits), Expect = 8.1e-25, Sum P(2) = 8.1e-25
Identities = 53/130 (40%), Positives = 75/130 (57%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G+++ V
Sbjct: 394 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKMNV 448
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 449 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 507
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 508 EVTEENFFEI 517
Score = 92 (37.4 bits), Expect = 8.1e-25, Sum P(2) = 8.1e-25
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTKD 29
PT+LNV+KND ++WDYT P L D
Sbjct: 267 PTRLNVFKNDQDTWDYTNPNLSGQGD 292
>UNIPROTKB|F1LQ48 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:RPTSVKV IPI:IPI00201964
Ensembl:ENSRNOT00000027425 ArrayExpress:F1LQ48 Uniprot:F1LQ48
Length = 595
Score = 223 (83.6 bits), Expect = 8.6e-25, Sum P(2) = 8.6e-25
Identities = 53/130 (40%), Positives = 75/130 (57%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G+++ V
Sbjct: 403 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKMNV 457
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 458 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 516
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 517 EVTEENFFEI 526
Score = 92 (37.4 bits), Expect = 8.6e-25, Sum P(2) = 8.6e-25
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTKD 29
PT+LNV+KND ++WDYT P L D
Sbjct: 239 PTRLNVFKNDQDTWDYTNPNLSGQGD 264
>UNIPROTKB|F1LPP9 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:3191
IPI:IPI00765134 RefSeq:NP_001128232.1 UniGene:Rn.33873 PRIDE:F1LPP9
Ensembl:ENSRNOT00000057034 GeneID:80846 KEGG:rno:80846
NextBio:614884 ArrayExpress:F1LPP9 Uniprot:F1LPP9
Length = 623
Score = 223 (83.6 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 53/130 (40%), Positives = 75/130 (57%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G+++ V
Sbjct: 431 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKMNV 485
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 486 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 544
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 545 EVTEENFFEI 554
Score = 92 (37.4 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGRTKD 29
PT+LNV+KND ++WDYT P L D
Sbjct: 267 PTRLNVFKNDQDTWDYTNPNLSGQGD 292
>UNIPROTKB|I3L8B8 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
Ensembl:ENSSSCT00000030162 Uniprot:I3L8B8
Length = 488
Score = 209 (78.6 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 50/104 (48%), Positives = 66/104 (63%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDV-SHPYELPDGSESFKD 162
G +V+MGD + ERA+ +L+ L GKRL V SKQ LS V S +EL DG+ S+KD
Sbjct: 319 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVWCSKQ--LSVVPSQIFELEDGTSSYKD 375
Query: 163 FTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
F S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 376 FAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 419
Score = 98 (39.6 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 179 PTRLNVIRNDNDSWDYTKPYLGR 201
>UNIPROTKB|I3LG16 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0033120 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QIRIPNG Ensembl:ENSSSCT00000024049
Uniprot:I3LG16
Length = 537
Score = 209 (78.6 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 50/104 (48%), Positives = 66/104 (63%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDV-SHPYELPDGSESFKD 162
G +V+MGD + ERA+ +L+ L GKRL V SKQ LS V S +EL DG+ S+KD
Sbjct: 368 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVWCSKQ--LSVVPSQIFELEDGTSSYKD 424
Query: 163 FTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
F S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 425 FAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 468
Score = 98 (39.6 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 239 PTRLNVIRNDNDSWDYTKPYLGR 261
>UNIPROTKB|B7WPG3 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC011247 HGNC:HGNC:25127 HOVERGEN:HBG105786 TIGRFAMs:TIGR01649
HOGENOM:HOG000293298 IPI:IPI00745396 SMR:B7WPG3 STRING:B7WPG3
Ensembl:ENST00000378915 Uniprot:B7WPG3
Length = 508
Score = 208 (78.3 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G +V+MGD + ERA+ +L+ L GKRL V SKQ + S +EL DG+ S+KDF
Sbjct: 339 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDF 396
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 397 AMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 439
Score = 98 (39.6 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 210 PTRLNVIRNDNDSWDYTKPYLGR 232
>UNIPROTKB|F1N7G0 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0033120 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QIRIPNG EMBL:DAAA02030598
IPI:IPI00709568 Ensembl:ENSBTAT00000027405 Uniprot:F1N7G0
Length = 541
Score = 208 (78.3 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G +V+MGD + ERA+ +L+ L GKRL V SKQ + S +EL DG+ S+KDF
Sbjct: 372 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDF 429
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 430 AMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 472
Score = 98 (39.6 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 243 PTRLNVIRNDNDSWDYTKPYLGR 265
>UNIPROTKB|D6W592 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CH471053
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 EMBL:AC011247 IPI:IPI00103247 UniGene:Hs.445497
HGNC:HGNC:25127 TIGRFAMs:TIGR01649 OMA:QIRIPNG
ProteinModelPortal:D6W592 SMR:D6W592 PRIDE:D6W592
Ensembl:ENST00000449105 PhylomeDB:D6W592 ArrayExpress:D6W592
Bgee:D6W592 Uniprot:D6W592
Length = 542
Score = 208 (78.3 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G +V+MGD + ERA+ +L+ L GKRL V SKQ + S +EL DG+ S+KDF
Sbjct: 373 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDF 430
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 431 AMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 473
Score = 98 (39.6 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 244 PTRLNVIRNDNDSWDYTKPYLGR 266
>UNIPROTKB|Q8WVV9 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0033120 "positive
regulation of RNA splicing" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0033120 EMBL:AY236963 EMBL:AF461722 EMBL:AF461712
EMBL:AF461713 EMBL:AF461715 EMBL:AF461717 EMBL:AF461719
EMBL:AF461721 EMBL:AF461720 EMBL:AF461718 EMBL:AF461716
EMBL:AF461714 EMBL:AK291462 EMBL:AC011247 EMBL:BC008217
EMBL:BC017480 EMBL:AL512692 IPI:IPI00103247 IPI:IPI00470410
IPI:IPI00479814 IPI:IPI00554613 RefSeq:NP_001136122.1
RefSeq:NP_612403.2 UniGene:Hs.445497 ProteinModelPortal:Q8WVV9
SMR:Q8WVV9 IntAct:Q8WVV9 MINT:MINT-1033123 STRING:Q8WVV9
PhosphoSite:Q8WVV9 DMDM:62286941 PaxDb:Q8WVV9 PRIDE:Q8WVV9
Ensembl:ENST00000409636 Ensembl:ENST00000410076 GeneID:92906
KEGG:hsa:92906 UCSC:uc021vgb.1 UCSC:uc021vgc.1 CTD:92906
GeneCards:GC02M038789 HGNC:HGNC:25127 HPA:HPA046084 MIM:611208
neXtProt:NX_Q8WVV9 PharmGKB:PA134987080 eggNOG:NOG326285
HOVERGEN:HBG105786 InParanoid:Q8WVV9 KO:K13159 OrthoDB:EOG49S662
GenomeRNAi:92906 NextBio:77908 ArrayExpress:Q8WVV9 Bgee:Q8WVV9
CleanEx:HS_HNRPLL Genevestigator:Q8WVV9 GermOnline:ENSG00000143889
TIGRFAMs:TIGR01649 Uniprot:Q8WVV9
Length = 542
Score = 208 (78.3 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G +V+MGD + ERA+ +L+ L GKRL V SKQ + S +EL DG+ S+KDF
Sbjct: 373 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDF 430
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 431 AMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 473
Score = 98 (39.6 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 244 PTRLNVIRNDNDSWDYTKPYLGR 266
>UNIPROTKB|J9P3Y8 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QIRIPNG EMBL:AAEX03010867
Ensembl:ENSCAFT00000049490 Uniprot:J9P3Y8
Length = 545
Score = 208 (78.3 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G +V+MGD + ERA+ +L+ L GKRL V SKQ + S +EL DG+ S+KDF
Sbjct: 376 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDF 433
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 434 AMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 476
Score = 98 (39.6 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 247 PTRLNVIRNDNDSWDYTKPYLGR 269
>MGI|MGI:1919942 [details] [associations]
symbol:Hnrpll "heterogeneous nuclear ribonucleoprotein
L-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919942 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0033120
CTD:92906 eggNOG:NOG326285 HOVERGEN:HBG105786 KO:K13159
OrthoDB:EOG49S662 TIGRFAMs:TIGR01649 EMBL:AK034860 EMBL:AK146879
EMBL:BC004763 EMBL:BC012849 EMBL:BC071184 IPI:IPI00121760
IPI:IPI00463538 IPI:IPI00555009 RefSeq:NP_659051.3 UniGene:Mm.64579
PDB:1WEX PDB:2E5I PDBsum:1WEX PDBsum:2E5I ProteinModelPortal:Q921F4
SMR:Q921F4 STRING:Q921F4 PhosphoSite:Q921F4 PaxDb:Q921F4
PRIDE:Q921F4 Ensembl:ENSMUST00000061331 GeneID:72692 KEGG:mmu:72692
UCSC:uc008dqk.1 GeneTree:ENSGT00550000074508 HOGENOM:HOG000293298
InParanoid:Q921F4 OMA:QIRIPNG EvolutionaryTrace:Q921F4
NextBio:336749 Bgee:Q921F4 CleanEx:MM_HNRPLL Genevestigator:Q921F4
GermOnline:ENSMUSG00000024095 Uniprot:Q921F4
Length = 591
Score = 208 (78.3 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G +V+MGD + ERA+ +L+ L GKRL V SKQ + S +EL DG+ S+KDF
Sbjct: 422 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDF 479
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 480 AMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 522
Score = 98 (39.6 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 293 PTRLNVIRNDNDSWDYTKPYLGR 315
>RGD|1305861 [details] [associations]
symbol:Hnrpll "heterogeneous nuclear ribonucleoprotein L-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1305861
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0033120 CTD:92906 KO:K13159
OrthoDB:EOG49S662 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
IPI:IPI00360055 RefSeq:XP_001063027.2 RefSeq:XP_233805.5
PRIDE:D4A3E1 Ensembl:ENSRNOT00000009175 GeneID:313842
KEGG:rno:313842 UCSC:RGD:1305861 NextBio:666896 Uniprot:D4A3E1
Length = 591
Score = 208 (78.3 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G +V+MGD + ERA+ +L+ L GKRL V SKQ + S +EL DG+ S+KDF
Sbjct: 422 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDF 479
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 480 AMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 522
Score = 98 (39.6 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 293 PTRLNVIRNDNDSWDYTKPYLGR 315
>UNIPROTKB|F1P0T4 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033120
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 OMA:QIRIPNG
EMBL:AADN02041246 EMBL:AADN02041247 EMBL:AADN02041248
IPI:IPI00579162 Ensembl:ENSGALT00000013852 Uniprot:F1P0T4
Length = 473
Score = 203 (76.5 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 46/98 (46%), Positives = 62/98 (63%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G +V+MGD + ERA+ +L+ L GKRL V SKQ + S +EL DG+ S+KDF
Sbjct: 304 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDF 361
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEE 201
S+ NRF + A KN IQPPS +LH++N P +TEE
Sbjct: 362 AMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEE 399
Score = 98 (39.6 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV +ND++SWDYT+P LGR
Sbjct: 175 PTRLNVIRNDNDSWDYTKPYLGR 197
>UNIPROTKB|Q5JB52 [details] [associations]
symbol:HNRPLL "Stromal RNA regulating factor" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC011247
UniGene:Hs.445497 HGNC:HGNC:25127 HOVERGEN:HBG105786
TIGRFAMs:TIGR01649 HOGENOM:HOG000293298 IPI:IPI00745396
EMBL:AY236962 SMR:Q5JB52 STRING:Q5JB52 Ensembl:ENST00000409328
Uniprot:Q5JB52
Length = 508
Score = 208 (78.3 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 104 GCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDF 163
G +V+MGD + ERA+ +L+ L GKRL V SKQ + S +EL DG+ S+KDF
Sbjct: 339 GTALVEMGDEYAVERAVTHLNNVKLF-GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDF 396
Query: 164 TGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
S+ NRF + A KN IQPPS +LH++N P +TEE T +
Sbjct: 397 AMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKL 439
Score = 86 (35.3 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 6 KLNVYKNDSESWDYTQPTLGR 26
+LNV +ND++SWDYT+P LGR
Sbjct: 212 RLNVIRNDNDSWDYTKPYLGR 232
>UNIPROTKB|I3LPU8 [details] [associations]
symbol:HNRNPL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045120 "pronucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0044212 GO:GO:0045120 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP565352
Ensembl:ENSSSCT00000031006 OMA:PNLSGQX Uniprot:I3LPU8
Length = 205
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 54/130 (41%), Positives = 75/130 (57%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G++L V
Sbjct: 13 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKLNV 67
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 68 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 126
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 127 EVTEENFFEI 136
>RGD|1359551 [details] [associations]
symbol:Fblim1 "filamin binding LIM protein 1" species:10116
"Rattus norvegicus" [GO:0001725 "stress fiber" evidence=ISO]
[GO:0016337 "cell-cell adhesion" evidence=ISO] [GO:0030054 "cell
junction" evidence=ISO] [GO:0031005 "filamin binding" evidence=ISO]
[GO:0033623 "regulation of integrin activation" evidence=ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1359551
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 TIGRFAMs:TIGR01649 HOGENOM:HOG000293298
OrthoDB:EOG4RFKSD UniGene:Rn.33873 IPI:IPI00364061 EMBL:BC086392
EMBL:AB260892 STRING:Q5U1Y5 UCSC:RGD:1359551 HOVERGEN:HBG058843
InParanoid:Q5U1Y5 Genevestigator:Q5U1Y5 Uniprot:Q5U1Y5
Length = 245
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 53/130 (40%), Positives = 75/130 (57%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G+++ V
Sbjct: 53 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKMNV 107
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 108 CVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPL 166
Query: 197 DITEEQLTDI 206
++TEE +I
Sbjct: 167 EVTEENFFEI 176
>UNIPROTKB|F1LZ79 [details] [associations]
symbol:F1LZ79 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
IPI:IPI00561021 Ensembl:ENSRNOT00000006719 ArrayExpress:F1LZ79
Uniprot:F1LZ79
Length = 485
Score = 149 (57.5 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 41/120 (34%), Positives = 64/120 (53%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G+++ V
Sbjct: 294 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKMNV 348
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L + S S+K F+ SR +R P+ A KN IQ PS +LHFF++ P
Sbjct: 349 CVSKQPAIMP-GQSYGL-ERSCSYKHFSESRNSRLSTPEQAAKNHIQHPSNVLHFFSSHP 406
Score = 81 (33.6 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV KN+ ++WDYT P G+
Sbjct: 178 PTRLNVSKNNQDTWDYTNPLSGQ 200
>UNIPROTKB|F1M040 [details] [associations]
symbol:F1M040 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00952207
Ensembl:ENSRNOT00000006710 ArrayExpress:F1M040 Uniprot:F1M040
Length = 488
Score = 149 (57.5 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 41/120 (34%), Positives = 64/120 (53%)
Query: 77 ERSYNSPVLDKFIGKPRGMSGPPSGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAV 136
+R +N L + K + M P G MV+M D + +RA+ +L+ + G+++ V
Sbjct: 298 DRVFNVFCLYGNVEKVKFMKSKP----GAAMVEMADGYAVDRAITHLNNNFMF-GQKMNV 352
Query: 137 AYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPP 196
SKQ + Y L + S S+K F+ SR +R P+ A KN IQ PS +LHFF++ P
Sbjct: 353 CVSKQPAIMP-GQSYGL-ERSCSYKHFSESRNSRLSTPEQAAKNHIQHPSNVLHFFSSHP 410
Score = 81 (33.6 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 4 PTKLNVYKNDSESWDYTQPTLGR 26
PT+LNV KN+ ++WDYT P G+
Sbjct: 178 PTRLNVSKNNQDTWDYTNPLSGQ 200
>RGD|71059 [details] [associations]
symbol:Hnrnpl "heterogeneous nuclear ribonucleoprotein L"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO]
InterPro:IPR012677 RGD:71059 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 UniGene:Rn.33873 IPI:IPI00364061
HOVERGEN:HBG058843 EMBL:AF260436 IntAct:Q9ET33 STRING:Q9ET33
PRIDE:Q9ET33 UCSC:RGD:71059 InParanoid:Q9ET33 ArrayExpress:Q9ET33
Genevestigator:Q9ET33 Uniprot:Q9ET33
Length = 140
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 38/71 (53%), Positives = 46/71 (64%)
Query: 136 VAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAP 195
V SKQ + Y L DGS S+KDF+ SR NRF P+ A KNRIQ PS +LHFFNAP
Sbjct: 2 VCVSKQPAIMP-GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAP 60
Query: 196 PDITEEQLTDI 206
++TEE +I
Sbjct: 61 LEVTEENFFEI 71
>WB|WBGene00016624 [details] [associations]
symbol:C44B7.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:FO080141 eggNOG:NOG326285 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOGENOM:HOG000293298 OMA:RPTSVKV RefSeq:NP_495411.2
ProteinModelPortal:Q95QR5 SMR:Q95QR5 STRING:Q95QR5 PaxDb:Q95QR5
PRIDE:Q95QR5 EnsemblMetazoa:C44B7.2a.1 EnsemblMetazoa:C44B7.2a.2
EnsemblMetazoa:C44B7.2a.3 GeneID:3565706 KEGG:cel:CELE_C44B7.2
UCSC:C44B7.2a.1 CTD:3565706 WormBase:C44B7.2a InParanoid:Q95QR5
NextBio:957535 ArrayExpress:Q95QR5 Uniprot:Q95QR5
Length = 597
Score = 166 (63.5 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 37/100 (37%), Positives = 56/100 (56%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++++G + + L + L G L S Q + + P+ LPDGS SFKD++ S
Sbjct: 349 IIELGTPEERQNVLDFLQGSALF-GLTLEFKPSHQECVHHLRDPFLLPDGSPSFKDYSSS 407
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
R RF P++A KNRI P+ LH+FNAP + E+ L D+
Sbjct: 408 RNQRFSTPELAAKNRIIFPTNTLHWFNAPGTMDEQALLDL 447
Score = 38 (18.4 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 4 PTKLNVYKNDSESWDYTQP 22
P ++ V + D + D+T P
Sbjct: 199 PDRVRVQRQDKDQRDFTLP 217
Score = 36 (17.7 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 10 YKNDSESWDYTQPTLG 25
Y++D E Y QP G
Sbjct: 289 YRDDYEDRGYAQPAGG 304
>UNIPROTKB|H7C464 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR012677 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC011247 HGNC:HGNC:25127
ProteinModelPortal:H7C464 Ensembl:ENST00000441689 Uniprot:H7C464
Length = 133
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 131 GKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGSRKNRFMNPKMAMKNRIQPPSQLLH 190
GKRL V SKQ + S +EL DG+ S+KDF S+ NRF + A KN IQPPS +LH
Sbjct: 6 GKRLNVCVSKQHSVVP-SQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLH 64
Query: 191 FFNAPPDITEEQLTDI 206
++N P +TEE T +
Sbjct: 65 YYNVPLCVTEETFTKL 80
>DICTYBASE|DDB_G0278105 [details] [associations]
symbol:DDB_G0278105 "heterogeneous nuclear
ribonucleoprotein L-like protein" species:44689 "Dictyostelium
discoideum" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0278105
GO:GO:0005634 GO:GO:0000166 EMBL:AAFI02000023 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG326285 KO:K13159
TIGRFAMs:TIGR01649 RefSeq:XP_642125.1 ProteinModelPortal:Q54YS7
EnsemblProtists:DDB0233648 GeneID:8621334 KEGG:ddi:DDB_G0278105
InParanoid:Q54YS7 OMA:VIRIVIF ProtClustDB:CLSZ2846835
Uniprot:Q54YS7
Length = 530
Score = 135 (52.6 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 103 EGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKD 162
+G MVQMGD++ AE A+ L+++ + G+++ V ++K ++ + SE +D
Sbjct: 358 KGSAMVQMGDSVQAEIAIQCLNQSSVY-GQKIGVFHTKYQYIVE----------SEKTRD 406
Query: 163 FTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTD 205
++ S NRF+N + KN +P S LHF N P + TE+QL D
Sbjct: 407 YSKSTLNRFLNNQPYGKNAYKP-SPTLHFLNVPLNFTEKQLID 448
Score = 48 (22.0 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 5 TKLNVYKNDSESWDYT 20
+KLNV +ND ++ DYT
Sbjct: 214 SKLNVKQNDDKTADYT 229
>ZFIN|ZDB-GENE-050522-492 [details] [associations]
symbol:ptbp1a "polypyrimidine tract binding protein
1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0060472 "positive regulation of cortical granule exocytosis by
elevation of cytosolic calcium ion concentration" evidence=IMP]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IMP]
[GO:0045746 "negative regulation of Notch signaling pathway"
evidence=IMP] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=IMP] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-492 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009953 GO:GO:0045746
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548
KO:K13218 OMA:SEECAQT eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ GO:GO:0060729 EMBL:CR788230 EMBL:BC095372
IPI:IPI00607308 RefSeq:NP_001018313.1 UniGene:Dr.45492 SMR:Q503D3
Ensembl:ENSDART00000017668 GeneID:323490 KEGG:dre:323490 CTD:323490
InParanoid:Q503D3 NextBio:20808275 GO:GO:0060472 Uniprot:Q503D3
Length = 574
Score = 126 (49.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 35/97 (36%), Positives = 47/97 (48%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L GK L SK + V P E + KD++ S
Sbjct: 421 LVQMSDGTQAQLAMSHLNGQKLY-GKALRATLSKH---TTVQLPREGHEDQGLTKDYSNS 476
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P + I PPS LH N PP +TE+ L
Sbjct: 477 PLHRFKKPGSKNYSNIFPPSSTLHLSNIPPSVTEDDL 513
Score = 53 (23.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 271 TSLNVKYNNDKSRDYTRPDL 290
>ZFIN|ZDB-GENE-091116-1 [details] [associations]
symbol:ptbp3 "polypyrimidine tract binding protein 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-091116-1 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:9991
OMA:PPSVTMD EMBL:BX510369 EMBL:CR931761 IPI:IPI00493597
RefSeq:XP_001335967.1 UniGene:Dr.40305 Ensembl:ENSDART00000040308
Ensembl:ENSDART00000146727 GeneID:798982 KEGG:dre:798982
NextBio:20933630 Uniprot:E7FB37
Length = 522
Score = 130 (50.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 36/100 (36%), Positives = 48/100 (48%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D A+ AM +L+ L GK + V SK V P E + KDF+GS
Sbjct: 369 LIQMADATQAQLAMSHLNGQRLY-GKVIRVTISKH---QTVQLPREGQEDQGLTKDFSGS 424
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP T++ L D+
Sbjct: 425 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSTTDDFLKDL 464
Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 TKLNVYKNDSESWDYTQ 21
T LNV N+ +S D+T+
Sbjct: 230 TSLNVKYNNDKSRDFTR 246
>UNIPROTKB|F1S6R7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:FP015903 Ensembl:ENSSSCT00000014665
Uniprot:F1S6R7
Length = 557
Score = 122 (48.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 35/97 (36%), Positives = 47/97 (48%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+ S
Sbjct: 404 LVQMADGSQAQLAMSHLNGHKL-HGKPVRITLSKH---QNVQLPREGQEDQGLTKDYGNS 459
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N PP I+EE L
Sbjct: 460 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDL 496
Score = 53 (23.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 261 TSLNVKYNNDKSRDYTRPDL 280
>UNIPROTKB|Q29099 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISS] [GO:0000381 "regulation
of alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X93009 PIR:S68857
RefSeq:NP_999396.1 UniGene:Ssc.16210 ProteinModelPortal:Q29099
SMR:Q29099 STRING:Q29099 PRIDE:Q29099 GeneID:397461 KEGG:ssc:397461
OrthoDB:EOG4GMTXQ Uniprot:Q29099
Length = 557
Score = 122 (48.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 35/97 (36%), Positives = 47/97 (48%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+ S
Sbjct: 404 LVQMADGSQAQLAMSHLNGHKL-HGKPVRITLSKH---QNVQLPREGQEDQGLTKDYGNS 459
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N PP I+EE L
Sbjct: 460 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDL 496
Score = 53 (23.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 261 TSLNVKYNNDKSRDYTRPDL 280
>UNIPROTKB|P26599 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005730 "nucleolus" evidence=TAS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CH471242
GO:GO:0048025 GO:GO:0000381 GO:GO:0008187 GO:GO:0036002
TIGRFAMs:TIGR01649 CTD:5725 HOVERGEN:HBG069548 KO:K13218
OMA:SEECAQT GO:GO:0051148 EMBL:X62006 EMBL:X65371 EMBL:X65372
EMBL:X60648 EMBL:X66975 EMBL:BT006819 EMBL:AC006273 EMBL:BC002397
EMBL:BC004383 EMBL:BC013694 IPI:IPI00179964 IPI:IPI00183626
IPI:IPI00334175 PIR:S23016 RefSeq:NP_002810.1 RefSeq:NP_114367.1
RefSeq:NP_114368.1 UniGene:Hs.172550 PDB:1QM9 PDB:1SJQ PDB:1SJR
PDB:2AD9 PDB:2ADB PDB:2ADC PDB:2EVZ PDB:3ZZY PDB:3ZZZ PDBsum:1QM9
PDBsum:1SJQ PDBsum:1SJR PDBsum:2AD9 PDBsum:2ADB PDBsum:2ADC
PDBsum:2EVZ PDBsum:3ZZY PDBsum:3ZZZ ProteinModelPortal:P26599
SMR:P26599 IntAct:P26599 MINT:MINT-1348690 STRING:P26599
PhosphoSite:P26599 DMDM:131528 SWISS-2DPAGE:P26599 PaxDb:P26599
PRIDE:P26599 DNASU:5725 Ensembl:ENST00000349038
Ensembl:ENST00000356948 Ensembl:ENST00000394601 GeneID:5725
KEGG:hsa:5725 UCSC:uc002lpq.2 UCSC:uc002lpr.2 GeneCards:GC19P000797
H-InvDB:HIX0137476 HGNC:HGNC:9583 HPA:CAB013507 MIM:600693
neXtProt:NX_P26599 PharmGKB:PA33934 eggNOG:NOG263741
HOGENOM:HOG000231699 ChEMBL:CHEMBL1293230 EvolutionaryTrace:P26599
GenomeRNAi:5725 NextBio:22252 PMAP-CutDB:P26599 ArrayExpress:P26599
Bgee:P26599 CleanEx:HS_PTBP1 Genevestigator:P26599
GermOnline:ENSG00000011304 Uniprot:P26599
Length = 531
Score = 121 (47.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 34/97 (35%), Positives = 47/97 (48%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+ S
Sbjct: 378 LVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSKH---QNVQLPREGQEDQGLTKDYGNS 433
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N PP ++EE L
Sbjct: 434 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 470
Score = 53 (23.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 261 TSLNVKYNNDKSRDYTRPDL 280
>ZFIN|ZDB-GENE-060810-49 [details] [associations]
symbol:ptbp2b "polypyrimidine tract binding protein
2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060810-49 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:BX005269 IPI:IPI00855280
RefSeq:NP_001093477.1 UniGene:Dr.75530 SMR:A5PM68
Ensembl:ENSDART00000038648 GeneID:562434 KEGG:dre:562434 CTD:562434
OMA:YTAVTPQ NextBio:20884409 Uniprot:A5PM68
Length = 538
Score = 123 (48.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 36/97 (37%), Positives = 46/97 (47%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D A+ AM +L+ + GK + V SK V P E D KDFT S
Sbjct: 386 LIQMSDGNQAQLAMSHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFTSS 441
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N P ++TEE L
Sbjct: 442 PLHRFKKPGSKNFQNIFPPSATLHLSNIPDNVTEEDL 478
Score = 48 (22.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 254 LNVKYNNDKSRDYTRPEL 271
>ZFIN|ZDB-GENE-030131-9796 [details] [associations]
symbol:ptbp1b "polypyrimidine tract binding
protein 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-9796
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:BC091854 IPI:IPI00613822
UniGene:Dr.75263 ProteinModelPortal:Q58EL3 STRING:Q58EL3
InParanoid:Q58EL3 ArrayExpress:Q58EL3 Bgee:Q58EL3 Uniprot:Q58EL3
Length = 586
Score = 121 (47.7 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 33/102 (32%), Positives = 49/102 (48%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D A+ AM +L+ L G+ L + SK + V P E + KD++ S
Sbjct: 433 LIQMSDGTQAQLAMSHLNGQKLY-GRPLRITLSKH---TTVQMPREGHEDQGLTKDYSNS 488
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISG 208
+RF P + I PPS LH N PP + E+ L + G
Sbjct: 489 PLHRFKKPGSKNYSNIFPPSSTLHLSNIPPSVVEDDLKLLFG 530
Score = 53 (23.7 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 290 TSLNVKYNNDKSRDYTRPDL 309
>UNIPROTKB|F1P5K0 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00571435 Ensembl:ENSGALT00000003039
ArrayExpress:F1P5K0 Uniprot:F1P5K0
Length = 527
Score = 120 (47.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 35/97 (36%), Positives = 45/97 (46%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK V P E + KD+ S
Sbjct: 374 LVQMADGNQAQLAMSHLNGQKL-HGKPIRITLSKH---QTVQLPREGQEDQGLTKDYGNS 429
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N PP I EE L
Sbjct: 430 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSIAEEDL 466
Score = 53 (23.7 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 232 TSLNVKYNNDKSRDYTRPDL 251
>UNIPROTKB|E1BVR1 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:SEECAQT GO:GO:0051148
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00684956 ProteinModelPortal:E1BVR1
Ensembl:ENSGALT00000003042 ArrayExpress:E1BVR1 Uniprot:E1BVR1
Length = 532
Score = 120 (47.3 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 35/97 (36%), Positives = 45/97 (46%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK V P E + KD+ S
Sbjct: 379 LVQMADGNQAQLAMSHLNGQKL-HGKPIRITLSKH---QTVQLPREGQEDQGLTKDYGNS 434
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N PP I EE L
Sbjct: 435 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSIAEEDL 471
Score = 53 (23.7 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 237 TSLNVKYNNDKSRDYTRPDL 256
>ZFIN|ZDB-GENE-050320-141 [details] [associations]
symbol:ptbp2a "polypyrimidine tract binding protein
2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050320-141
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:CU896585 IPI:IPI00996240 Ensembl:ENSDART00000123275
Bgee:F1QG05 Uniprot:F1QG05
Length = 512
Score = 121 (47.7 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 35/97 (36%), Positives = 46/97 (47%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D A+ AM +L+ + + K + V SK V P + D KDFT S
Sbjct: 360 LIQMADMNQAQLAMSHLNGQKMFS-KIIRVTMSKH---QTVQLPRDGLDDQGLTKDFTNS 415
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N P D+TEE L
Sbjct: 416 PLHRFKKPGSKNFQNIFPPSATLHLSNIPQDVTEEDL 452
Score = 48 (22.0 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 246 LNVKYNNDKSRDYTRPEL 263
>UNIPROTKB|F1LM18 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00562850
Ensembl:ENSRNOT00000044865 ArrayExpress:F1LM18 Uniprot:F1LM18
Length = 554
Score = 119 (46.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 33/100 (33%), Positives = 47/100 (47%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK V P E + KD+ S
Sbjct: 401 LVQMADGSQAQLAMSHLNGHKL-HGKSVRITLSKH---QSVQLPREGQEDQGLTKDYGSS 456
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP ++E+ L +
Sbjct: 457 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSL 496
Score = 53 (23.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 260 TSLNVKYNNDKSRDYTRPDL 279
>UNIPROTKB|Q6P736 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract binding protein 1,
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:62047 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474029 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ IPI:IPI00390239 UniGene:Rn.64440 EMBL:BC061858
RefSeq:NP_001257986.1 RefSeq:NP_071961.2 SMR:Q6P736 STRING:Q6P736
Ensembl:ENSRNOT00000030357 GeneID:29497 KEGG:rno:29497
InParanoid:Q6P736 Genevestigator:Q6P736 Uniprot:Q6P736
Length = 556
Score = 119 (46.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 33/100 (33%), Positives = 47/100 (47%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK V P E + KD+ S
Sbjct: 403 LVQMADGSQAQLAMSHLNGHKL-HGKSVRITLSKH---QSVQLPREGQEDQGLTKDYGSS 458
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP ++E+ L +
Sbjct: 459 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSL 498
Score = 53 (23.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 260 TSLNVKYNNDKSRDYTRPDL 279
>UNIPROTKB|Q8WN55 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0051148 "negative regulation of muscle cell differentiation"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AF445640 IPI:IPI00712263
RefSeq:NP_776867.1 UniGene:Bt.9031 ProteinModelPortal:Q8WN55
SMR:Q8WN55 PRIDE:Q8WN55 Ensembl:ENSBTAT00000066209 GeneID:282018
KEGG:bta:282018 CTD:5725 HOVERGEN:HBG069548 KO:K13218 OMA:SEECAQT
NextBio:20805882 ArrayExpress:Q8WN55 GO:GO:0051148 Uniprot:Q8WN55
Length = 531
Score = 118 (46.6 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 34/97 (35%), Positives = 46/97 (47%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK V P E + KD+ S
Sbjct: 378 LVQMADGSQAQLAMSHLNGHKL-HGKPVRITLSKH---QSVQLPREGQEDQGLTKDYGNS 433
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N PP I+E+ L
Sbjct: 434 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDL 470
Score = 53 (23.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 261 TSLNVKYNNDKSRDYTRPDL 280
>UNIPROTKB|J9P5T5 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:5725 KO:K13218 EMBL:AAEX03012673
RefSeq:XP_542215.2 ProteinModelPortal:J9P5T5
Ensembl:ENSCAFT00000049054 GeneID:485097 KEGG:cfa:485097
Uniprot:J9P5T5
Length = 557
Score = 118 (46.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 33/97 (34%), Positives = 47/97 (48%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+ S
Sbjct: 404 LVQMADGSQAQLAMSHLNGHKL-HGKPVRITLSKH---QNVQLPREGQEDQGLTKDYGNS 459
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N PP ++E+ L
Sbjct: 460 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDL 496
Score = 53 (23.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 261 TSLNVKYNNDKSRDYTRPDL 280
>UNIPROTKB|F1PCJ7 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051148 "negative regulation of muscle cell
differentiation" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:AAEX03012673
Ensembl:ENSCAFT00000031317 Uniprot:F1PCJ7
Length = 558
Score = 118 (46.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 33/97 (34%), Positives = 47/97 (48%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+ S
Sbjct: 405 LVQMADGSQAQLAMSHLNGHKL-HGKPVRITLSKH---QNVQLPREGQEDQGLTKDYGNS 460
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N PP ++E+ L
Sbjct: 461 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDL 497
Score = 53 (23.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 262 TSLNVKYNNDKSRDYTRPDL 281
>UNIPROTKB|F1S549 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 EMBL:CU137694
Ensembl:ENSSSCT00000007533 Uniprot:F1S549
Length = 401
Score = 118 (46.6 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 248 LIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 303
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 304 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 347
Score = 48 (22.0 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 116 LNVKYNNDKSRDYTRPDL 133
>UNIPROTKB|I3LP39 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 EMBL:CU137694
Ensembl:ENSSSCT00000024275 Uniprot:I3LP39
Length = 405
Score = 118 (46.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 252 LIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 307
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 308 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 351
Score = 48 (22.0 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 116 LNVKYNNDKSRDYTRPDL 133
>UNIPROTKB|I3LDE4 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:FP085536 EMBL:CU137694 Ensembl:ENSSSCT00000022271
Uniprot:I3LDE4
Length = 411
Score = 118 (46.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 258 LIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 313
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 314 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 357
Score = 48 (22.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 117 LNVKYNNDKSRDYTRPDL 134
>RGD|62047 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0003697 "single-stranded DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;TAS]
[GO:0004519 "endonuclease activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0033119
"negative regulation of RNA splicing" evidence=ISO] [GO:0036002
"pre-mRNA binding" evidence=ISO] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=ISO;ISS] [GO:0051148
"negative regulation of muscle cell differentiation"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:62047
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0004519
GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
GO:GO:0051148 eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X60789
EMBL:X60790 EMBL:X74565 IPI:IPI00231555 IPI:IPI00390239 PIR:S15552
PIR:S36629 UniGene:Rn.64440 ProteinModelPortal:Q00438 SMR:Q00438
STRING:Q00438 PhosphoSite:Q00438 PRIDE:Q00438 UCSC:RGD:62047
InParanoid:Q00438 ChEMBL:CHEMBL2786 NextBio:609388
ArrayExpress:Q00438 Genevestigator:Q00438
GermOnline:ENSRNOG00000010448 Uniprot:Q00438
Length = 555
Score = 116 (45.9 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+V+M D A+ AM +L+ L +GK + + SK V P E + KD+ S
Sbjct: 402 LVEMADGSQAQLAMSHLNGHKL-HGKSVRITLSKH---QSVQLPREGQEDQGLTKDYGSS 457
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP ++E+ L +
Sbjct: 458 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSL 497
Score = 53 (23.7 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 TKLNVYKNDSESWDYTQPTL 24
T LNV N+ +S DYT+P L
Sbjct: 260 TSLNVKYNNDKSRDYTRPDL 279
>MGI|MGI:1923334 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=ISO] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0045595 "regulation of cell differentiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923334
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043249 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ CTD:9991 EMBL:AK033732
EMBL:AK088560 EMBL:AL824704 EMBL:BC006638 EMBL:BC057641
IPI:IPI00221840 IPI:IPI00975110 RefSeq:NP_659153.2
RefSeq:NP_835458.1 UniGene:Mm.331640 ProteinModelPortal:Q8BHD7
SMR:Q8BHD7 STRING:Q8BHD7 PhosphoSite:Q8BHD7 PaxDb:Q8BHD7
PRIDE:Q8BHD7 Ensembl:ENSMUST00000030076 Ensembl:ENSMUST00000148331
Ensembl:ENSMUST00000172768 GeneID:230257 KEGG:mmu:230257
UCSC:uc008szw.2 UCSC:uc008szx.2 InParanoid:A2ANH0 ChiTaRS:PTBP3
NextBio:379861 Bgee:Q8BHD7 CleanEx:MM_ROD1 Genevestigator:Q8BHD7
GermOnline:ENSMUSG00000028382 Uniprot:Q8BHD7
Length = 523
Score = 122 (48.0 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 36/100 (36%), Positives = 46/100 (46%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +LS L GK L SK V P E + KDF+ S
Sbjct: 370 LVQMADASQAQLAMNHLSGQRLY-GKVLRATLSKH---QAVQLPREGQEDQGLTKDFSNS 425
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP +T + L ++
Sbjct: 426 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465
Score = 39 (18.8 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 TKLNVYKNDSESWDYTQ 21
T LNV N+ +S D+T+
Sbjct: 230 TSLNVKYNNDKSRDFTR 246
>DICTYBASE|DDB_G0275365 [details] [associations]
symbol:DDB_G0275365 "Heterogeneous nuclear
ribonucleoprotein L" species:44689 "Dictyostelium discoideum"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275365 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AAFI02000013 eggNOG:NOG326285
TIGRFAMs:TIGR01649 RefSeq:XP_643683.1 ProteinModelPortal:Q553T2
EnsemblProtists:DDB0202577 GeneID:8619950 KEGG:ddi:DDB_G0275365
InParanoid:Q553T2 OMA:SITDSHN Uniprot:Q553T2
Length = 695
Score = 126 (49.4 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 38/107 (35%), Positives = 51/107 (47%)
Query: 100 SGPEGCCMVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSES 159
S +G +VQM D AE + + L L + YSK + ++D SH E P S
Sbjct: 406 SSKKGAALVQMEDVQQAEAVIRFYHQMPLFKDT-LQINYSKHLSITD-SHNPESPTLS-- 461
Query: 160 FKDFTGSRKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
KDF S NRF +P K+ + PSQ L+F N P D TE +
Sbjct: 462 -KDFAQSNLNRFTHPINTYKH-LYKPSQTLYFSNVPKDFTETNFNQL 506
>UNIPROTKB|Q9UKA9 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:2000177 "regulation of neural
precursor cell proliferation" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 EMBL:AF176085 EMBL:AB051232
EMBL:AB051233 EMBL:AF530580 EMBL:AF530581 EMBL:AF530582
EMBL:AF530583 EMBL:BK000526 EMBL:AL357150 EMBL:BC016582
IPI:IPI00254162 IPI:IPI00514064 IPI:IPI00641664 IPI:IPI00647067
IPI:IPI00743676 IPI:IPI00748295 RefSeq:NP_067013.1
UniGene:Hs.269895 UniGene:Hs.596061 PDB:2CQ1 PDBsum:2CQ1
ProteinModelPortal:Q9UKA9 SMR:Q9UKA9 IntAct:Q9UKA9
MINT:MINT-1483252 STRING:Q9UKA9 PhosphoSite:Q9UKA9 DMDM:74761983
REPRODUCTION-2DPAGE:IPI00647067 PaxDb:Q9UKA9 PRIDE:Q9UKA9
DNASU:58155 Ensembl:ENST00000236228 Ensembl:ENST00000370197
Ensembl:ENST00000370198 Ensembl:ENST00000426398 GeneID:58155
KEGG:hsa:58155 UCSC:uc001drn.2 UCSC:uc001dro.2 UCSC:uc001drq.3
UCSC:uc001drr.3 CTD:58155 GeneCards:GC01P097187 HGNC:HGNC:17662
HPA:HPA047420 MIM:608449 neXtProt:NX_Q9UKA9 PharmGKB:PA33935
OrthoDB:EOG473PSG ChiTaRS:PTBP2 EvolutionaryTrace:Q9UKA9
GenomeRNAi:58155 NextBio:64859 ArrayExpress:Q9UKA9 Bgee:Q9UKA9
CleanEx:HS_PTBP2 Genevestigator:Q9UKA9 GermOnline:ENSG00000117569
Uniprot:Q9UKA9
Length = 531
Score = 118 (46.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 379 LIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 434
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 435 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478
Score = 48 (22.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 260 LNVKYNNDKSRDYTRPDL 277
>MGI|MGI:1860489 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=ISO] [GO:2000177 "regulation
of neural precursor cell proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1860489 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
GO:GO:2000177 KO:K14948 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG ChiTaRS:PTBP2
EMBL:AF095718 EMBL:AK013734 EMBL:AK137348 EMBL:BC010255
EMBL:AY333752 EMBL:BK000527 IPI:IPI00136002 IPI:IPI00751759
RefSeq:NP_062423.1 UniGene:Mm.29966 ProteinModelPortal:Q91Z31
SMR:Q91Z31 IntAct:Q91Z31 STRING:Q91Z31 PhosphoSite:Q91Z31
PaxDb:Q91Z31 PRIDE:Q91Z31 Ensembl:ENSMUST00000029780 GeneID:56195
KEGG:mmu:56195 UCSC:uc008rdi.1 UCSC:uc008rdk.2 InParanoid:Q91Z31
OMA:QSQLAMS NextBio:312010 Bgee:Q91Z31 CleanEx:MM_PTBP2
Genevestigator:Q91Z31 GermOnline:ENSMUSG00000028134 Uniprot:Q91Z31
Length = 531
Score = 118 (46.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 379 LIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 434
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 435 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478
Score = 48 (22.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 260 LNVKYNNDKSRDYTRPDL 277
>RGD|1359267 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISO] [GO:0006376
"mRNA splice site selection" evidence=IEA;ISO] [GO:0033119
"negative regulation of RNA splicing" evidence=IEA;ISO] [GO:2000177
"regulation of neural precursor cell proliferation"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1359267
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 KO:K14948 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG
EMBL:AJ010585 EMBL:BC082076 EMBL:AY333750 IPI:IPI00471764
IPI:IPI00758469 RefSeq:NP_001005555.1 UniGene:Rn.64916
ProteinModelPortal:Q66H20 SMR:Q66H20 STRING:Q66H20 PRIDE:Q66H20
Ensembl:ENSRNOT00000015036 GeneID:310820 KEGG:rno:310820
UCSC:RGD:1359267 InParanoid:Q66H20 NextBio:662705
Genevestigator:Q66H20 GermOnline:ENSRNOG00000010827 Uniprot:Q66H20
Length = 531
Score = 118 (46.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 379 LIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 434
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 435 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478
Score = 48 (22.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 260 LNVKYNNDKSRDYTRPDL 277
>UNIPROTKB|F1NRD6 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:AADN02012892 IPI:IPI00602746
Ensembl:ENSGALT00000008906 ArrayExpress:F1NRD6 Uniprot:F1NRD6
Length = 532
Score = 118 (46.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 379 LIQMADGNQSQLAMSHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 434
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 435 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478
Score = 48 (22.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 260 LNVKYNNDKSRDYTRPDL 277
>UNIPROTKB|E2RSK4 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QSQLAMS EMBL:AAEX03004787
EMBL:AAEX03004788 EMBL:AAEX03004789 EMBL:AAEX03004790
ProteinModelPortal:E2RSK4 PRIDE:E2RSK4 Ensembl:ENSCAFT00000031985
Uniprot:E2RSK4
Length = 532
Score = 118 (46.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 379 LIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 434
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 435 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478
Score = 48 (22.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 260 LNVKYNNDKSRDYTRPDL 277
>UNIPROTKB|B4DSS8 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 HOGENOM:HOG000231699 EMBL:AL357150
IPI:IPI00254162 UniGene:Hs.269895 UniGene:Hs.596061 HGNC:HGNC:17662
ChiTaRS:PTBP2 OMA:QSQLAMS EMBL:AK299897 SMR:B4DSS8 STRING:B4DSS8
Ensembl:ENST00000394184 UCSC:uc010otz.1 Uniprot:B4DSS8
Length = 548
Score = 118 (46.6 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 395 LIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 450
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 451 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 494
Score = 48 (22.0 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 7 LNVYKNDSESWDYTQPTL 24
LNV N+ +S DYT+P L
Sbjct: 271 LNVKYNNDKSRDYTRPDL 288
>UNIPROTKB|F1PXP9 [details] [associations]
symbol:PTBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 OMA:PPSVTMD
EMBL:AAEX03008069 EMBL:AAEX03008070 Ensembl:ENSCAFT00000004839
Uniprot:F1PXP9
Length = 521
Score = 121 (47.7 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 36/100 (36%), Positives = 46/100 (46%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +LS L GK L SK V P E + KDF+ S
Sbjct: 368 LVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKH---QAVQLPREGQEDQGLTKDFSNS 423
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP +T + L ++
Sbjct: 424 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 463
Score = 39 (18.8 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 TKLNVYKNDSESWDYTQ 21
T LNV N+ +S D+T+
Sbjct: 228 TSLNVKYNNDKSRDFTR 244
>UNIPROTKB|F1MPG6 [details] [associations]
symbol:F1MPG6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0033119 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:PPSVTMD EMBL:DAAA02024547 IPI:IPI00700660
Ensembl:ENSBTAT00000022272 Uniprot:F1MPG6
Length = 523
Score = 121 (47.7 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 36/100 (36%), Positives = 46/100 (46%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +LS L GK L SK V P E + KDF+ S
Sbjct: 370 LVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKH---QAVQLPREGQEDQGLTKDFSNS 425
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP +T + L ++
Sbjct: 426 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 465
Score = 39 (18.8 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 TKLNVYKNDSESWDYTQ 21
T LNV N+ +S D+T+
Sbjct: 228 TSLNVKYNNDKSRDFTR 244
>UNIPROTKB|Q06A95 [details] [associations]
symbol:ROD1 "ROD1" species:9823 "Sus scrofa" [GO:0033119
"negative regulation of RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0033119 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ OMA:PPSVTMD EMBL:CU234201
EMBL:DQ972969 RefSeq:NP_001070683.1 UniGene:Ssc.16910 SMR:Q06A95
Ensembl:ENSSSCT00000006012 GeneID:768100 KEGG:ssc:768100
CTD:100701891 Uniprot:Q06A95
Length = 523
Score = 121 (47.7 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 36/100 (36%), Positives = 46/100 (46%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +LS L GK L SK V P E + KDF+ S
Sbjct: 370 LVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKH---QAVQLPREGQEDQGLTKDFSNS 425
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP +T + L ++
Sbjct: 426 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 465
Score = 39 (18.8 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 TKLNVYKNDSESWDYTQ 21
T LNV N+ +S D+T+
Sbjct: 228 TSLNVKYNNDKSRDFTR 244
>RGD|621671 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IEA;ISO] [GO:0043249
"erythrocyte maturation" evidence=IEA] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:621671 GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0033119
GO:GO:0043249 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ CTD:9991 OMA:PPSVTMD EMBL:AB023966
IPI:IPI00326775 RefSeq:NP_112636.1 UniGene:Rn.162818
ProteinModelPortal:Q9Z118 SMR:Q9Z118 STRING:Q9Z118 PRIDE:Q9Z118
Ensembl:ENSRNOT00000022107 GeneID:83515 KEGG:rno:83515
UCSC:RGD:621671 InParanoid:Q9Z118 NextBio:615974
Genevestigator:Q9Z118 GermOnline:ENSRNOG00000016334 Uniprot:Q9Z118
Length = 523
Score = 121 (47.7 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 36/100 (36%), Positives = 46/100 (46%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +LS L GK L SK V P E + KDF+ S
Sbjct: 370 LVQMADASQAQIAMNHLSGQRLY-GKVLRATLSKH---QAVQLPREGQEDQGLTKDFSNS 425
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP +T + L ++
Sbjct: 426 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNL 465
Score = 39 (18.8 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 TKLNVYKNDSESWDYTQ 21
T LNV N+ +S D+T+
Sbjct: 230 TSLNVKYNNDKSRDFTR 246
>UNIPROTKB|A6NLN1 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471242
TIGRFAMs:TIGR01649 EMBL:AC006273 UniGene:Hs.172550 DNASU:5725
HGNC:HGNC:9583 PharmGKB:PA33934 GenomeRNAi:5725 NextBio:22252
IPI:IPI00413691 SMR:A6NLN1 STRING:A6NLN1 Ensembl:ENST00000350092
UCSC:uc002lps.2 HOGENOM:HOG000045782 HOVERGEN:HBG055095
Uniprot:A6NLN1
Length = 197
Score = 121 (47.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 34/97 (35%), Positives = 47/97 (48%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +L+ L +GK + + SK +V P E + KD+ S
Sbjct: 44 LVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSKH---QNVQLPREGQEDQGLTKDYGNS 99
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQL 203
+RF P I PPS LH N PP ++EE L
Sbjct: 100 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 136
>UNIPROTKB|O95758 [details] [associations]
symbol:PTBP3 "Polypyrimidine tract-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0045595 "regulation of cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IDA] [GO:0009653 "anatomical structure
morphogenesis" evidence=TAS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471105
GO:GO:0033119 GO:GO:0009653 GO:GO:0043249 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:AK001685 EMBL:AK302558 EMBL:CR749471
EMBL:AL158824 EMBL:AL359073 EMBL:BC039896 EMBL:BC044585
EMBL:BI463123 EMBL:AB023967 IPI:IPI00159072 IPI:IPI00384710
IPI:IPI00470879 IPI:IPI00640632 IPI:IPI00915287 IPI:IPI00915299
IPI:IPI00915400 RefSeq:NP_001157260.1 RefSeq:NP_001157262.1
RefSeq:NP_001231826.1 RefSeq:NP_001231827.1 RefSeq:NP_005147.3
UniGene:Hs.269988 ProteinModelPortal:O95758 SMR:O95758
IntAct:O95758 STRING:O95758 PhosphoSite:O95758 PaxDb:O95758
PRIDE:O95758 Ensembl:ENST00000210227 Ensembl:ENST00000334318
Ensembl:ENST00000343327 Ensembl:ENST00000374255
Ensembl:ENST00000374257 Ensembl:ENST00000458258 GeneID:9991
KEGG:hsa:9991 UCSC:uc004bfv.3 UCSC:uc004bfw.3 UCSC:uc004bfx.3
UCSC:uc004bfz.3 CTD:9991 GeneCards:GC09M114981 H-InvDB:HIX0008290
HGNC:HGNC:10253 MIM:607527 neXtProt:NX_O95758 PharmGKB:PA34625
OMA:PPSVTMD GenomeRNAi:9991 NextBio:37743 ArrayExpress:O95758
Bgee:O95758 CleanEx:HS_ROD1 Genevestigator:O95758
GermOnline:ENSG00000119314 Uniprot:O95758
Length = 552
Score = 121 (47.7 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 36/100 (36%), Positives = 46/100 (46%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D A+ AM +LS L GK L SK V P E + KDF+ S
Sbjct: 399 LVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKH---QAVQLPREGQEDQGLTKDFSNS 454
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N PP +T + L ++
Sbjct: 455 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNL 494
Score = 39 (18.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 5 TKLNVYKNDSESWDYTQ 21
T LNV N+ +S D+T+
Sbjct: 259 TSLNVKYNNDKSRDFTR 275
>TAIR|locus:2018630 [details] [associations]
symbol:PTB3 "polypyrimidine tract-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006417 "regulation of translation" evidence=IEP] [GO:0043484
"regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 EMBL:AC005687 KO:K14948
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:BT014899 EMBL:BT015028
IPI:IPI00544143 RefSeq:NP_001077672.1 RefSeq:NP_175010.2
UniGene:At.22472 ProteinModelPortal:Q6ICX4 SMR:Q6ICX4 STRING:Q6ICX4
PaxDb:Q6ICX4 PRIDE:Q6ICX4 EnsemblPlants:AT1G43190.1
EnsemblPlants:AT1G43190.2 GeneID:840918 KEGG:ath:AT1G43190
GeneFarm:5076 TAIR:At1g43190 InParanoid:Q6ICX4 OMA:IKMHNHK
PhylomeDB:Q6ICX4 ProtClustDB:CLSN2690441 Genevestigator:Q6ICX4
GermOnline:AT1G43190 Uniprot:Q6ICX4
Length = 432
Score = 115 (45.5 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 37/98 (37%), Positives = 51/98 (52%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQMGD AE A+ L +L GKRL V +SK HP P G++S D+ S
Sbjct: 286 LVQMGDGFQAELAVHFLKGAMLF-GKRLEVNFSK--------HPNITP-GTDSH-DYVNS 334
Query: 167 RKNRFMNPKMAMKNRIQ-PPSQLLHFFNAPPDITEEQL 203
NRF N A R P++++H P D+TEE++
Sbjct: 335 NLNRF-NRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEV 371
Score = 42 (19.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 6 KLNVYKNDSESWDYTQPTL 24
+L V N+ S DYT P L
Sbjct: 179 ELQVNYNNDRSRDYTNPNL 197
>UNIPROTKB|F1S548 [details] [associations]
symbol:LOC100739008 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 RefSeq:XP_003481556.1
Ensembl:ENSSSCT00000007534 GeneID:100739008 KEGG:ssc:100739008
OMA:IQMSTIE Uniprot:F1S548
Length = 255
Score = 118 (46.6 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
++QM D ++ AM +L+ + GK + V SK V P E D KDF S
Sbjct: 102 LIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLSKH---QTVQLPREGLDDQGLTKDFGNS 157
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDISGRT 210
+RF P I PPS LH N PP + EE L + T
Sbjct: 158 PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 201
>RGD|727953 [details] [associations]
symbol:Smptb "polypyrimidine tract-binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:727953
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000380 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ HSSP:P26599 EMBL:CH474078 EMBL:AY223520
IPI:IPI00331913 RefSeq:NP_877970.1 UniGene:Rn.97598 SMR:Q80XZ1
Ensembl:ENSRNOT00000014611 GeneID:302879 KEGG:rno:302879
UCSC:RGD:727953 CTD:302879 NextBio:650282 Genevestigator:Q80XZ1
Uniprot:Q80XZ1
Length = 588
Score = 113 (44.8 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 34/100 (34%), Positives = 47/100 (47%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQM D AE A+ +L+ L GK L + SK V P E + KD+ S
Sbjct: 435 LVQMADGSQAELALRHLNGHKLY-GKALCILLSKH---QSVKLPREGKEDQGLTKDYANS 490
Query: 167 RKNRFMNPKMAMKNRIQPPSQLLHFFNAPPDITEEQLTDI 206
+RF P I PPS LH N P ++EE+L ++
Sbjct: 491 PLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNL 530
Score = 40 (19.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 2 SAPTKLNVYKNDSESWDYTQPTL 24
S T L V N+ +S DY +P L
Sbjct: 264 SGLTNLMVKYNNDKSRDYMRPDL 286
>UNIPROTKB|F1LY02 [details] [associations]
symbol:F1LY02 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074508
IPI:IPI00778797 Ensembl:ENSRNOT00000036047 Uniprot:F1LY02
Length = 494
Score = 99 (39.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 107 MVQMGDTLSAERAMGNLSKTLLCNGKRLAVAYSKQVFLSDVSHPYELPDGSESFKDFTGS 166
+VQ D A+ A+ +L++ L +G + + SK + V P+E KD++ S
Sbjct: 350 LVQSTDGSQAQLAISHLNRHKL-HGTSVHITPSKH---NSVQLPHEGQKDQRQTKDYSSS 405
Query: 167 RKNRFMNPKMAMKN--RIQPPSQLLHFFNAPPDITEEQLTDI 206
+ F P KN I PPS LH N PP ++E+ +
Sbjct: 406 PLHHFKKP--GSKNFWNIFPPSATLHLSNIPPSVSEDDFKSL 445
Score = 48 (22.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 5 TKLNVYKNDSESWDYTQPTLG 25
T+LNV N+ +S YT P +G
Sbjct: 249 TRLNVQYNNDKSRGYTIPDVG 269
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 211 172 0.00093 108 3 11 22 0.44 32
31 0.48 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 66
No. of states in DFA: 595 (63 KB)
Total size of DFA: 157 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.27u 0.10s 16.37t Elapsed: 00:00:10
Total cpu time: 16.28u 0.10s 16.38t Elapsed: 00:00:10
Start: Thu Aug 15 12:52:16 2013 End: Thu Aug 15 12:52:26 2013